Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034042.t1 | XP_013454687.1 | 97.5 | 282 | 5 | 1 | 1 | 282 | 1 | 280 | 4.90E-158 | 567 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034042.t1 | P0CL95 | 30.6 | 245 | 132 | 8 | 30 | 253 | 10 | 237 | 6.5e-26 | 119.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034042.t1 | A0A072UHW3 | 97.5 | 282 | 5 | 1 | 1 | 282 | 1 | 280 | 3.5e-158 | 567.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene034042 | MS.gene067344 | PPI |
| MS.gene034042 | MS.gene034041 | PPI |
| MS.gene034042 | MS.gene37311 | PPI |
| MS.gene067343 | MS.gene034042 | PPI |
| MS.gene79485 | MS.gene034042 | PPI |
| MS.gene034042 | MS.gene86352 | PPI |
| MS.gene038854 | MS.gene034042 | PPI |
| MS.gene36243 | MS.gene034042 | PPI |
| MS.gene83338 | MS.gene034042 | PPI |
| MS.gene034042 | MS.gene89061 | PPI |
| MS.gene026794 | MS.gene034042 | PPI |
| MS.gene034040 | MS.gene034042 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034042.t1 | MTR_4g011320 | 97.518 | 282 | 5 | 1 | 1 | 282 | 1 | 280 | 0.0 | 565 |
| MS.gene034042.t1 | MTR_2g103140 | 83.077 | 260 | 41 | 2 | 1 | 260 | 1 | 257 | 2.77e-146 | 410 |
| MS.gene034042.t1 | MTR_2g054780 | 65.844 | 243 | 83 | 0 | 15 | 257 | 10 | 252 | 9.62e-119 | 341 |
| MS.gene034042.t1 | MTR_3g107630 | 67.797 | 236 | 76 | 0 | 22 | 257 | 19 | 254 | 1.30e-116 | 335 |
| MS.gene034042.t1 | MTR_2g054780 | 63.786 | 243 | 81 | 1 | 15 | 257 | 10 | 245 | 5.95e-112 | 323 |
| MS.gene034042.t1 | MTR_4g132890 | 30.088 | 226 | 131 | 8 | 37 | 253 | 4 | 211 | 1.83e-19 | 84.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034042.t1 | AT1G52700 | 73.684 | 247 | 63 | 1 | 11 | 257 | 9 | 253 | 2.64e-130 | 370 |
| MS.gene034042.t1 | AT1G52700 | 73.684 | 247 | 63 | 1 | 11 | 257 | 9 | 253 | 2.64e-130 | 370 |
| MS.gene034042.t1 | AT1G52700 | 73.469 | 245 | 63 | 1 | 13 | 257 | 2 | 244 | 6.60e-129 | 366 |
| MS.gene034042.t1 | AT3G15650 | 66.667 | 276 | 69 | 2 | 1 | 257 | 1 | 272 | 2.48e-126 | 361 |
| MS.gene034042.t1 | AT3G15650 | 71.595 | 257 | 69 | 1 | 1 | 257 | 1 | 253 | 8.82e-123 | 351 |
| MS.gene034042.t1 | AT3G15650 | 69.962 | 263 | 73 | 1 | 1 | 257 | 1 | 263 | 1.45e-121 | 348 |
| MS.gene034042.t1 | AT5G20060 | 64.257 | 249 | 88 | 1 | 9 | 257 | 5 | 252 | 2.80e-120 | 345 |
| MS.gene034042.t1 | AT5G20060 | 64.257 | 249 | 88 | 1 | 9 | 257 | 5 | 252 | 2.80e-120 | 345 |
| MS.gene034042.t1 | AT5G20060 | 64.257 | 249 | 88 | 1 | 9 | 257 | 5 | 252 | 2.80e-120 | 345 |
| MS.gene034042.t1 | AT5G20060 | 64.257 | 249 | 88 | 1 | 9 | 257 | 5 | 252 | 2.80e-120 | 345 |
| MS.gene034042.t1 | AT1G52700 | 73.134 | 201 | 54 | 0 | 57 | 257 | 1 | 201 | 3.19e-105 | 305 |
| MS.gene034042.t1 | AT1G52700 | 75.661 | 189 | 44 | 1 | 11 | 199 | 9 | 195 | 1.51e-100 | 293 |
| MS.gene034042.t1 | AT1G52700 | 75.661 | 189 | 44 | 1 | 11 | 199 | 9 | 195 | 1.51e-100 | 293 |
| MS.gene034042.t1 | AT1G51300 | 39.924 | 263 | 141 | 3 | 6 | 257 | 8 | 264 | 6.44e-59 | 189 |
| MS.gene034042.t1 | AT1G51300 | 41.667 | 216 | 118 | 2 | 16 | 229 | 27 | 236 | 6.67e-54 | 176 |
| MS.gene034042.t1 | AT1G52695 | 42.857 | 210 | 113 | 2 | 14 | 222 | 3 | 206 | 4.01e-52 | 170 |
| MS.gene034042.t1 | AT1G51300 | 43.312 | 157 | 81 | 2 | 16 | 170 | 16 | 166 | 7.54e-41 | 140 |
| MS.gene034042.t1 | AT1G47786 | 46.296 | 162 | 75 | 4 | 16 | 173 | 33 | 186 | 2.56e-37 | 130 |
| MS.gene034042.t1 | AT1G52470 | 37.383 | 214 | 116 | 5 | 22 | 235 | 13 | 208 | 7.58e-37 | 131 |
| MS.gene034042.t1 | AT1G52460 | 38.095 | 231 | 116 | 7 | 29 | 255 | 13 | 220 | 1.34e-35 | 127 |
| MS.gene034042.t1 | AT1G52470 | 39.326 | 178 | 90 | 5 | 22 | 199 | 13 | 172 | 2.99e-32 | 117 |
| MS.gene034042.t1 | AT1G52470 | 39.326 | 178 | 90 | 5 | 22 | 199 | 13 | 172 | 3.17e-32 | 117 |
| MS.gene034042.t1 | AT1G52440 | 34.135 | 208 | 84 | 4 | 29 | 234 | 17 | 173 | 9.26e-27 | 103 |
| MS.gene034042.t1 | AT1G47780 | 52.727 | 110 | 49 | 1 | 64 | 173 | 23 | 129 | 5.37e-26 | 99.8 |
| MS.gene034042.t1 | AT4G22300 | 31.050 | 219 | 124 | 7 | 40 | 249 | 51 | 251 | 9.71e-22 | 92.0 |
| MS.gene034042.t1 | AT4G22305 | 31.507 | 219 | 123 | 8 | 40 | 249 | 6 | 206 | 1.00e-20 | 88.6 |
Find 79 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGCTCATGCCTGGGGCTT+GGG | 0.096496 | 4.4:-88152034 | MS.gene034042:CDS |
| TGGCTCATGCCTGGGGCTTG+GGG | 0.138001 | 4.4:-88152033 | MS.gene034042:CDS |
| CTTGGCTCATGCCTGGGGCT+TGG | 0.151372 | 4.4:-88152035 | MS.gene034042:CDS |
| CAATTGGCTTGGCTCATGCC+TGG | 0.224859 | 4.4:-88152042 | MS.gene034042:CDS |
| CTCAACTTAAGAGCAGTTAT+TGG | 0.234690 | 4.4:-88153068 | MS.gene034042:CDS |
| AGAAGAACTAATTTGGAGTT+TGG | 0.266947 | 4.4:-88154597 | MS.gene034042:CDS |
| GTTATATGATGCAGATAAAA+TGG | 0.282666 | 4.4:-88153697 | MS.gene034042:intron |
| GGACTAAGTGGCTGGCTTCC+AGG | 0.288410 | 4.4:-88153047 | MS.gene034042:CDS |
| TATCAAATGGGGTCTGGTTC+TGG | 0.310234 | 4.4:-88154936 | MS.gene034042:intron |
| AATTGGCTTGGCTCATGCCT+GGG | 0.311627 | 4.4:-88152041 | MS.gene034042:CDS |
| ACAATAATCAGGGTTTGATA+TGG | 0.314213 | 4.4:-88153497 | MS.gene034042:intron |
| AACTGCTAGAAGAACTAATT+TGG | 0.328772 | 4.4:-88154604 | MS.gene034042:CDS |
| CTGCATGGTCTTGGAGATAA+TGG | 0.359696 | 4.4:-88154522 | MS.gene034042:CDS |
| GAACCATGCATGTTATCAAA+TGG | 0.366787 | 4.4:-88154949 | MS.gene034042:CDS |
| TGGGATTGGAGGCTTCAGTA+TGG | 0.372915 | 4.4:-88153162 | MS.gene034042:CDS |
| GATGTAGTCCTCTACAAATA+TGG | 0.381501 | 4.4:-88152499 | MS.gene034042:CDS |
| CAGGCATGAGCCAAGCCAAT+TGG | 0.382122 | 4.4:+88152043 | None:intergenic |
| ATAGTCTGGCTGCATGGTCT+TGG | 0.385531 | 4.4:-88154531 | MS.gene034042:CDS |
| CAGATGATGGTCCAGATGAT+TGG | 0.393245 | 4.4:-88153465 | MS.gene034042:CDS |
| AACCATGCATGTTATCAAAT+GGG | 0.399917 | 4.4:-88154948 | MS.gene034042:CDS |
| TATTGTGGTATAGTGAAAGT+TGG | 0.404396 | 4.4:-88153182 | MS.gene034042:intron |
| GGCTCATGCCTGGGGCTTGG+GGG | 0.436395 | 4.4:-88152032 | MS.gene034042:CDS |
| GCTCAAACCTTGTGTTCAGC+AGG | 0.437434 | 4.4:-88152466 | MS.gene034042:CDS |
| ATTGTGGTATAGTGAAAGTT+GGG | 0.439268 | 4.4:-88153181 | MS.gene034042:intron |
| CAATAATCAGGGTTTGATAT+GGG | 0.441882 | 4.4:-88153496 | MS.gene034042:intron |
| ACTTGATGCCATATTATTTG+AGG | 0.443726 | 4.4:+88152007 | None:intergenic |
| CTTGATGCCATATTATTTGA+GGG | 0.445143 | 4.4:+88152008 | None:intergenic |
| TCTAAACCCTCCCAATCATC+TGG | 0.452958 | 4.4:+88153454 | None:intergenic |
| ACAGGTCGGGTAGGAGCAGT+TGG | 0.454599 | 4.4:+88153668 | None:intergenic |
| TATAACATTCAAATCCTATG+AGG | 0.464278 | 4.4:-88152434 | MS.gene034042:CDS |
| AGATGATGGTCCAGATGATT+GGG | 0.466419 | 4.4:-88153464 | MS.gene034042:CDS |
| AACATCAAGCAACTATAGTC+TGG | 0.471029 | 4.4:-88154545 | MS.gene034042:CDS |
| GCCATGGGAAGGTATGGAAA+TGG | 0.473050 | 4.4:-88153104 | MS.gene034042:CDS |
| TGCTCTTAAGTTGAGACTGC+AGG | 0.479567 | 4.4:+88153076 | None:intergenic |
| GGGATTGGAGGCTTCAGTAT+GGG | 0.484847 | 4.4:-88153161 | MS.gene034042:CDS |
| ATTGTTGTATACCTTGATCC+TGG | 0.487269 | 4.4:+88153029 | None:intergenic |
| TTGGAAGTGGAAGTGATTCA+AGG | 0.493512 | 4.4:+88153949 | None:intergenic |
| GCATGTTATCAAATGGGGTC+TGG | 0.494637 | 4.4:-88154942 | MS.gene034042:CDS |
| GCTGAAGTCTCCAATTGGCT+TGG | 0.496475 | 4.4:-88152053 | MS.gene034042:CDS |
| ATAGTGAAAGTTGGGATTGG+AGG | 0.499249 | 4.4:-88153173 | MS.gene034042:intron |
| TACAAACTTACATTTGGAAG+TGG | 0.499274 | 4.4:+88153936 | None:intergenic |
| ATTGGCTTGGCTCATGCCTG+GGG | 0.502183 | 4.4:-88152040 | MS.gene034042:CDS |
| AGATGGCTGAAGTCTCCAAT+TGG | 0.504814 | 4.4:-88152058 | MS.gene034042:CDS |
| GGTATAGTGAAAGTTGGGAT+TGG | 0.506683 | 4.4:-88153176 | MS.gene034042:intron |
| GCCTTGAAAGTACCATCAGC+TGG | 0.508974 | 4.4:+88153391 | None:intergenic |
| CAGTTATTGGACTAAGTGGC+TGG | 0.511811 | 4.4:-88153055 | MS.gene034042:CDS |
| ACCCGACCTGTAGCTATACT+TGG | 0.523563 | 4.4:-88153656 | MS.gene034042:CDS |
| GAGACTTCAGCCATCTCTCT+AGG | 0.530300 | 4.4:+88152065 | None:intergenic |
| ACACATGTAGTGAGACCTAA+AGG | 0.532303 | 4.4:-88154570 | MS.gene034042:CDS |
| ACCAAGTATAGCTACAGGTC+GGG | 0.532936 | 4.4:+88153655 | None:intergenic |
| CTCAAACCTTGTGTTCAGCA+GGG | 0.534728 | 4.4:-88152465 | MS.gene034042:CDS |
| GTGGCTGGCTTCCAGGATCA+AGG | 0.539805 | 4.4:-88153040 | MS.gene034042:intron |
| GTCTTGGAGATAATGGTTTG+AGG | 0.543260 | 4.4:-88154515 | MS.gene034042:intron |
| AGAGCAGTTATTGGACTAAG+TGG | 0.552676 | 4.4:-88153059 | MS.gene034042:CDS |
| ATAACATTCAAATCCTATGA+GGG | 0.562724 | 4.4:-88152433 | MS.gene034042:CDS |
| AAGCCACCAAGTATAGCTAC+AGG | 0.562898 | 4.4:+88153650 | None:intergenic |
| CAGGTCGGGTAGGAGCAGTT+GGG | 0.563753 | 4.4:+88153669 | None:intergenic |
| GCTCTTAAGTTGAGACTGCA+GGG | 0.570121 | 4.4:+88153077 | None:intergenic |
| CGACCTGTAGCTATACTTGG+TGG | 0.573380 | 4.4:-88153653 | MS.gene034042:CDS |
| GCCATTTCCATACCTTCCCA+TGG | 0.577058 | 4.4:+88153103 | None:intergenic |
| ATGGGAGAACTATCAGATGA+TGG | 0.578285 | 4.4:-88153478 | MS.gene034042:CDS |
| TTGAAACCCTGCTGAACACA+AGG | 0.578854 | 4.4:+88152459 | None:intergenic |
| GCAACTATAGTCTGGCTGCA+TGG | 0.583738 | 4.4:-88154537 | MS.gene034042:CDS |
| ACCCCATTTGATAACATGCA+TGG | 0.589572 | 4.4:+88154946 | None:intergenic |
| ACTTCTCTCCATATTTGTAG+AGG | 0.592373 | 4.4:+88152491 | None:intergenic |
| AATTGTCACATGAAGCAAGA+AGG | 0.595405 | 4.4:-88152838 | MS.gene034042:CDS |
| TTATACAGTTCCTAGAGAGA+TGG | 0.595540 | 4.4:-88152075 | MS.gene034042:CDS |
| ATAGTGACATACTAATTCCA+TGG | 0.603581 | 4.4:+88152786 | None:intergenic |
| CACCAAGTATAGCTACAGGT+CGG | 0.615230 | 4.4:+88153654 | None:intergenic |
| TTAAGTTGAGACTGCAGGGG+AGG | 0.616117 | 4.4:+88153081 | None:intergenic |
| TTGTCAACTGAGCCAGCTGA+TGG | 0.618407 | 4.4:-88153403 | MS.gene034042:intron |
| AGTATAGCTACAGGTCGGGT+AGG | 0.625069 | 4.4:+88153659 | None:intergenic |
| TGATGGTCCAGATGATTGGG+AGG | 0.628482 | 4.4:-88153461 | MS.gene034042:CDS |
| ACCATGCATGTTATCAAATG+GGG | 0.644999 | 4.4:-88154947 | MS.gene034042:CDS |
| GATGGTCCAGATGATTGGGA+GGG | 0.653067 | 4.4:-88153460 | MS.gene034042:CDS |
| ATTTGCAATATGTGCTGCTG+AGG | 0.655308 | 4.4:+88153429 | None:intergenic |
| GTCATGTTGTAGAAGACATG+CGG | 0.655778 | 4.4:-88151986 | MS.gene034042:CDS |
| TAACATTCAAATCCTATGAG+GGG | 0.669236 | 4.4:-88152432 | MS.gene034042:intron |
| CTCTTAAGTTGAGACTGCAG+GGG | 0.679564 | 4.4:+88153078 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATAATTTTTTTAAAAAA+AGG | + | chr4.4:88154502-88154521 | None:intergenic | 0.0% |
| !!! | AAAAGTTGTTATTTTTTTAT+AGG | - | chr4.4:88152600-88152619 | MS.gene034042:intron | 10.0% |
| !!! | AAATCTTTATATTTTTTATG+AGG | + | chr4.4:88153559-88153578 | None:intergenic | 10.0% |
| !!! | AATCTTTATATTTTTTATGA+GGG | + | chr4.4:88153558-88153577 | None:intergenic | 10.0% |
| !! | CATAATAAAAAATTTAAGCT+TGG | - | chr4.4:88152909-88152928 | MS.gene034042:intron | 15.0% |
| !! | GTATACAACAATATTATTTA+GGG | - | chr4.4:88153886-88153905 | MS.gene034042:intron | 15.0% |
| !! | TAAAAAAGTAGTAGTTAATT+TGG | + | chr4.4:88152514-88152533 | None:intergenic | 15.0% |
| !! | TTGTTAAATAGCAAAATATA+AGG | + | chr4.4:88153391-88153410 | None:intergenic | 15.0% |
| !!! | AAAAAATGAATTTTCAAGAA+AGG | + | chr4.4:88152029-88152048 | None:intergenic | 15.0% |
| !!! | ATTTGGTTTTTTATTTAAGT+AGG | - | chr4.4:88154158-88154177 | MS.gene034042:intron | 15.0% |
| !! | AAAATCTTATAGAAAACTAG+AGG | + | chr4.4:88153307-88153326 | None:intergenic | 20.0% |
| !! | AAATCTTATAGAAAACTAGA+GGG | + | chr4.4:88153306-88153325 | None:intergenic | 20.0% |
| !! | AGATAGTAAATTATATCACA+AGG | - | chr4.4:88152486-88152505 | MS.gene034042:CDS | 20.0% |
| !! | AGTACACATTATTAAATCTT+TGG | - | chr4.4:88153954-88153973 | MS.gene034042:CDS | 20.0% |
| !! | ATCTAATTGTATTGAAAAGA+TGG | + | chr4.4:88152423-88152442 | None:intergenic | 20.0% |
| !! | CAACAAAAAAAAATTATGCA+TGG | + | chr4.4:88152057-88152076 | None:intergenic | 20.0% |
| !! | GATAGTAAATTATATCACAA+GGG | - | chr4.4:88152487-88152506 | MS.gene034042:CDS | 20.0% |
| !! | GGTATACAACAATATTATTT+AGG | - | chr4.4:88153885-88153904 | MS.gene034042:intron | 20.0% |
| !! | TCAACTATGAAATAATAAAG+CGG | - | chr4.4:88154539-88154558 | MS.gene034042:CDS | 20.0% |
| !!! | ACTTGACATGAATTTTTTTT+TGG | - | chr4.4:88152705-88152724 | MS.gene034042:intron | 20.0% |
| !!! | AGTTGTTATTTTTTTATAGG+TGG | - | chr4.4:88152603-88152622 | MS.gene034042:intron | 20.0% |
| !!! | ATAGTTGATATTATAAACCA+TGG | + | chr4.4:88152247-88152266 | None:intergenic | 20.0% |
| !!! | ATATCTAAAATTCATTTGTC+AGG | - | chr4.4:88154378-88154397 | MS.gene034042:intron | 20.0% |
| !!! | CTAAAACATCATTTTTATTG+TGG | - | chr4.4:88153707-88153726 | MS.gene034042:intron | 20.0% |
| !!! | TTGCTATTTAACAATAATCA+GGG | - | chr4.4:88153397-88153416 | MS.gene034042:intron | 20.0% |
| !!! | TTTGCTATTTAACAATAATC+AGG | - | chr4.4:88153396-88153415 | MS.gene034042:intron | 20.0% |
| !!! | TTTTTATTTAAGTAGGATGT+TGG | - | chr4.4:88154165-88154184 | MS.gene034042:intron | 20.0% |
| ! | AAAGAAAGGTAATGTAATCA+AGG | + | chr4.4:88152223-88152242 | None:intergenic | 25.0% |
| ! | AAATACTATAGAGCTATGTA+CGG | + | chr4.4:88153148-88153167 | None:intergenic | 25.0% |
| ! | AAGTAGAAACTTAAAGCAAT+CGG | - | chr4.4:88154666-88154685 | MS.gene034042:intron | 25.0% |
| ! | ACATCTTAATATGTGACATT+TGG | - | chr4.4:88154141-88154160 | MS.gene034042:intron | 25.0% |
| ! | AGAAAAACAAAGTTATCATG+TGG | + | chr4.4:88152672-88152691 | None:intergenic | 25.0% |
| ! | ATAACATTCAAATCCTATGA+GGG | - | chr4.4:88154471-88154490 | MS.gene034042:intron | 25.0% |
| ! | CATTTGTATCAATGTTATGT+CGG | + | chr4.4:88154265-88154284 | None:intergenic | 25.0% |
| ! | GTTATATGATGCAGATAAAA+TGG | - | chr4.4:88153207-88153226 | MS.gene034042:intron | 25.0% |
| ! | TACACAATTCTGATTTAGTA+AGG | + | chr4.4:88153333-88153352 | None:intergenic | 25.0% |
| ! | TATAACATTCAAATCCTATG+AGG | - | chr4.4:88154470-88154489 | MS.gene034042:intron | 25.0% |
| ! | TCAAATAGAATCTCAATAGA+AGG | + | chr4.4:88152564-88152583 | None:intergenic | 25.0% |
| ! | TGAGAATACAAACTTACATT+TGG | + | chr4.4:88152977-88152996 | None:intergenic | 25.0% |
| ! | TTATAAACCATGGTAAAGAA+AGG | + | chr4.4:88152237-88152256 | None:intergenic | 25.0% |
| ! | TTTGCAATTGATGTTAATGT+AGG | - | chr4.4:88154024-88154043 | MS.gene034042:intron | 25.0% |
| !! | CTATTTGAGATAAATTCTGT+TGG | - | chr4.4:88152576-88152595 | MS.gene034042:intron | 25.0% |
| !! | TTTATCATCTAGTTTAATCG+TGG | + | chr4.4:88154630-88154649 | None:intergenic | 25.0% |
| !! | TTTTACAACTATATACTCGA+AGG | + | chr4.4:88153926-88153945 | None:intergenic | 25.0% |
| !!! | AGCAATTGTTTTTCACTTTT+TGG | - | chr4.4:88154780-88154799 | MS.gene034042:intron | 25.0% |
| !!! | TATGCTGTATGTTTTTAGTA+TGG | - | chr4.4:88152532-88152551 | MS.gene034042:intron | 25.0% |
| AAAGGAAAATTTCTTGCAAG+GGG | + | chr4.4:88152011-88152030 | None:intergenic | 30.0% | |
| AACCATGCATGTTATCAAAT+GGG | - | chr4.4:88151956-88151975 | MS.gene034042:CDS | 30.0% | |
| AACTGCTAGAAGAACTAATT+TGG | - | chr4.4:88152300-88152319 | MS.gene034042:intron | 30.0% | |
| AATCTTTGGTTGTTTACATG+TGG | - | chr4.4:88153968-88153987 | MS.gene034042:intron | 30.0% | |
| ACAAAAATTACCATTGAGTC+AGG | - | chr4.4:88152797-88152816 | MS.gene034042:intron | 30.0% | |
| ACAATAATCAGGGTTTGATA+TGG | - | chr4.4:88153407-88153426 | MS.gene034042:CDS | 30.0% | |
| ACAGACAAACACATAGATAT+TGG | + | chr4.4:88153123-88153142 | None:intergenic | 30.0% | |
| ACTTGATGCCATATTATTTG+AGG | + | chr4.4:88154900-88154919 | None:intergenic | 30.0% | |
| AGAAAGGAAAATTTCTTGCA+AGG | + | chr4.4:88152013-88152032 | None:intergenic | 30.0% | |
| ATACTTTATATGCCCTTTGA+AGG | - | chr4.4:88152271-88152290 | MS.gene034042:intron | 30.0% | |
| ATAGTGACATACTAATTCCA+TGG | + | chr4.4:88154121-88154140 | None:intergenic | 30.0% | |
| ATTAAAATGACCTGACTCAA+TGG | + | chr4.4:88152810-88152829 | None:intergenic | 30.0% | |
| ATTGTGGTATAGTGAAAGTT+GGG | - | chr4.4:88153723-88153742 | MS.gene034042:intron | 30.0% | |
| CAATAATCAGGGTTTGATAT+GGG | - | chr4.4:88153408-88153427 | MS.gene034042:CDS | 30.0% | |
| CTTGATGCCATATTATTTGA+GGG | + | chr4.4:88154899-88154918 | None:intergenic | 30.0% | |
| GAAAGGAAAATTTCTTGCAA+GGG | + | chr4.4:88152012-88152031 | None:intergenic | 30.0% | |
| GAAGATAACAAACATCCATT+AGG | + | chr4.4:88152865-88152884 | None:intergenic | 30.0% | |
| GATCAAATCAGTGAAATCTT+TGG | - | chr4.4:88154583-88154602 | MS.gene034042:CDS | 30.0% | |
| TAACATTCAAATCCTATGAG+GGG | - | chr4.4:88154472-88154491 | MS.gene034042:intron | 30.0% | |
| TACAAACTTACATTTGGAAG+TGG | + | chr4.4:88152971-88152990 | None:intergenic | 30.0% | |
| TACATTACCTTTCTTTACCA+TGG | - | chr4.4:88152227-88152246 | MS.gene034042:intron | 30.0% | |
| TACTTTATATGCCCTTTGAA+GGG | - | chr4.4:88152272-88152291 | MS.gene034042:intron | 30.0% | |
| TATAGGTGGAAAGCTTAATT+TGG | - | chr4.4:88152617-88152636 | MS.gene034042:intron | 30.0% | |
| TATTGTGGTATAGTGAAAGT+TGG | - | chr4.4:88153722-88153741 | MS.gene034042:intron | 30.0% | |
| TGACAAATTGATCTGATCAT+CGG | - | chr4.4:88154728-88154747 | MS.gene034042:intron | 30.0% | |
| TTACTAAGATTCTGGACTAA+GGG | - | chr4.4:88152645-88152664 | MS.gene034042:intron | 30.0% | |
| ! | AGAAGAACTAATTTGGAGTT+TGG | - | chr4.4:88152307-88152326 | MS.gene034042:intron | 30.0% |
| ! | GCAAATATGTGTTTTCCTAA+TGG | - | chr4.4:88152847-88152866 | MS.gene034042:CDS | 30.0% |
| !! | AGTCAGGTCATTTTAATCTA+TGG | - | chr4.4:88152813-88152832 | MS.gene034042:CDS | 30.0% |
| !!! | TTTGGCTTGTTATTTTGTGT+AGG | - | chr4.4:88154798-88154817 | MS.gene034042:intron | 30.0% |
| AAAAACAAGGAAGGTAGAGA+AGG | - | chr4.4:88154944-88154963 | MS.gene034042:CDS | 35.0% | |
| AACATCAAGCAACTATAGTC+TGG | - | chr4.4:88152359-88152378 | MS.gene034042:intron | 35.0% | |
| AATTGTCACATGAAGCAAGA+AGG | - | chr4.4:88154066-88154085 | MS.gene034042:intron | 35.0% | |
| ACCATGCATGTTATCAAATG+GGG | - | chr4.4:88151957-88151976 | MS.gene034042:CDS | 35.0% | |
| ACTTCTCTCCATATTTGTAG+AGG | + | chr4.4:88154416-88154435 | None:intergenic | 35.0% | |
| ATTGTTGTATACCTTGATCC+TGG | + | chr4.4:88153878-88153897 | None:intergenic | 35.0% | |
| CAAAGATTGTGACTATAGCT+TGG | + | chr4.4:88152102-88152121 | None:intergenic | 35.0% | |
| CATTTGAGCATTCAATGCAA+CGG | + | chr4.4:88154307-88154326 | None:intergenic | 35.0% | |
| CTCAACTTAAGAGCAGTTAT+TGG | - | chr4.4:88153836-88153855 | MS.gene034042:intron | 35.0% | |
| GAACCATGCATGTTATCAAA+TGG | - | chr4.4:88151955-88151974 | MS.gene034042:CDS | 35.0% | |
| GATCAGATCAATTTGTCAGT+TGG | + | chr4.4:88154726-88154745 | None:intergenic | 35.0% | |
| GATGTAGTCCTCTACAAATA+TGG | - | chr4.4:88154405-88154424 | MS.gene034042:intron | 35.0% | |
| GTTACTAAGATTCTGGACTA+AGG | - | chr4.4:88152644-88152663 | MS.gene034042:intron | 35.0% | |
| TCAGTGAAATCTTTGGATCA+TGG | - | chr4.4:88154590-88154609 | MS.gene034042:CDS | 35.0% | |
| TCTCAAGTATGGATGGTAAA+AGG | + | chr4.4:88153000-88153019 | None:intergenic | 35.0% | |
| TCTTTGGATCATGGTTCAAT+TGG | - | chr4.4:88154599-88154618 | MS.gene034042:CDS | 35.0% | |
| TGGAAGAGTTACTAAGATTC+TGG | - | chr4.4:88152637-88152656 | MS.gene034042:intron | 35.0% | |
| TTATACAGTTCCTAGAGAGA+TGG | - | chr4.4:88154829-88154848 | MS.gene034042:intron | 35.0% | |
| ! | AATTGATCTGATCATCGGTT+TGG | - | chr4.4:88154733-88154752 | MS.gene034042:intron | 35.0% |
| ! | GTTGCTTGATGTTTTCCTTT+AGG | + | chr4.4:88152352-88152371 | None:intergenic | 35.0% |
| !!! | CTTGTTATTTTGTGTAGGCT+TGG | - | chr4.4:88154803-88154822 | MS.gene034042:intron | 35.0% |
| AAGGTTTGTGACTGTGATTG+TGG | + | chr4.4:88152204-88152223 | None:intergenic | 40.0% | |
| ACACATGTAGTGAGACCTAA+AGG | - | chr4.4:88152334-88152353 | MS.gene034042:intron | 40.0% | |
| AGACATGCGGAACAAAAACA+AGG | - | chr4.4:88154931-88154950 | MS.gene034042:intron | 40.0% | |
| AGAGCAGTTATTGGACTAAG+TGG | - | chr4.4:88153845-88153864 | MS.gene034042:intron | 40.0% | |
| ATAGTGAAAGTTGGGATTGG+AGG | - | chr4.4:88153731-88153750 | MS.gene034042:intron | 40.0% | |
| ATGCGGAACAAAAACAAGGA+AGG | - | chr4.4:88154935-88154954 | MS.gene034042:intron | 40.0% | |
| ATGGGAGAACTATCAGATGA+TGG | - | chr4.4:88153426-88153445 | MS.gene034042:CDS | 40.0% | |
| ATTCCATGGCTCAGAAAAAC+TGG | + | chr4.4:88154107-88154126 | None:intergenic | 40.0% | |
| CAATTGATGTAGCCGAAATG+TGG | - | chr4.4:88152148-88152167 | MS.gene034042:intron | 40.0% | |
| CCATCCATACTTGAGATTGA+AGG | - | chr4.4:88153004-88153023 | MS.gene034042:intron | 40.0% | |
| CCTTCAATCTCAAGTATGGA+TGG | + | chr4.4:88153007-88153026 | None:intergenic | 40.0% | |
| CTGATCAGAATGATGACATC+CGG | - | chr4.4:88153630-88153649 | MS.gene034042:intron | 40.0% | |
| GGTATAGTGAAAGTTGGGAT+TGG | - | chr4.4:88153728-88153747 | MS.gene034042:intron | 40.0% | |
| GTCATGTTGTAGAAGACATG+CGG | - | chr4.4:88154918-88154937 | MS.gene034042:intron | 40.0% | |
| TAACGTCTGTGACCACATTT+CGG | + | chr4.4:88152163-88152182 | None:intergenic | 40.0% | |
| TTGGAAGTGGAAGTGATTCA+AGG | + | chr4.4:88152958-88152977 | None:intergenic | 40.0% | |
| TTGTGACTATAGCTTGGCTA+AGG | + | chr4.4:88152096-88152115 | None:intergenic | 40.0% | |
| ! | ACCCCATTTGATAACATGCA+TGG | + | chr4.4:88151961-88151980 | None:intergenic | 40.0% |
| ! | AGATGATGGTCCAGATGATT+GGG | - | chr4.4:88153440-88153459 | MS.gene034042:CDS | 40.0% |
| ! | ATTTGCAATATGTGCTGCTG+AGG | + | chr4.4:88153478-88153497 | None:intergenic | 40.0% |
| ! | GGAGATAATGGTTTGAGGTA+TGG | - | chr4.4:88152394-88152413 | MS.gene034042:intron | 40.0% |
| ! | GTCAGTTGGTTCAAGTCTAA+TGG | + | chr4.4:88154712-88154731 | None:intergenic | 40.0% |
| ! | GTCTTGGAGATAATGGTTTG+AGG | - | chr4.4:88152389-88152408 | MS.gene034042:intron | 40.0% |
| ! | TGTGTATTCAGAAAGCGTAG+TGG | - | chr4.4:88154337-88154356 | MS.gene034042:intron | 40.0% |
| ! | TTACCAGTTTTTCTGAGCCA+TGG | - | chr4.4:88154101-88154120 | MS.gene034042:intron | 40.0% |
| !!! | TCTGCAACTTGTTTTGCCAT+GGG | - | chr4.4:88153785-88153804 | MS.gene034042:intron | 40.0% |
| !!! | TTCTGCAACTTGTTTTGCCA+TGG | - | chr4.4:88153784-88153803 | MS.gene034042:intron | 40.0% |
| AAAAAAGGCTCACCCCTCAT+AGG | + | chr4.4:88154487-88154506 | None:intergenic | 45.0% | |
| AAGCCACCAAGTATAGCTAC+AGG | + | chr4.4:88153257-88153276 | None:intergenic | 45.0% | |
| AATCACGAGAACAATCGCAC+CGG | + | chr4.4:88153652-88153671 | None:intergenic | 45.0% | |
| ACCAAGTATAGCTACAGGTC+GGG | + | chr4.4:88153252-88153271 | None:intergenic | 45.0% | |
| AGATGGCTGAAGTCTCCAAT+TGG | - | chr4.4:88154846-88154865 | MS.gene034042:intron | 45.0% | |
| CACCAAGTATAGCTACAGGT+CGG | + | chr4.4:88153253-88153272 | None:intergenic | 45.0% | |
| CACGCCTTCAATCTCAAGTA+TGG | + | chr4.4:88153011-88153030 | None:intergenic | 45.0% | |
| CAGTTATTGGACTAAGTGGC+TGG | - | chr4.4:88153849-88153868 | MS.gene034042:intron | 45.0% | |
| CGGATGTCATCATTCTGATC+AGG | + | chr4.4:88153632-88153651 | None:intergenic | 45.0% | |
| CTCAAACCTTGTGTTCAGCA+GGG | - | chr4.4:88154439-88154458 | MS.gene034042:intron | 45.0% | |
| GCATGTTATCAAATGGGGTC+TGG | - | chr4.4:88151962-88151981 | MS.gene034042:CDS | 45.0% | |
| TCTAAACCCTCCCAATCATC+TGG | + | chr4.4:88153453-88153472 | None:intergenic | 45.0% | |
| TGGGGGACCCTCAAATAATA+TGG | - | chr4.4:88154889-88154908 | MS.gene034042:intron | 45.0% | |
| TTGAAACCCTGCTGAACACA+AGG | + | chr4.4:88154448-88154467 | None:intergenic | 45.0% | |
| ! | CAGATGATGGTCCAGATGAT+TGG | - | chr4.4:88153439-88153458 | MS.gene034042:CDS | 45.0% |
| ! | CTGCATGGTCTTGGAGATAA+TGG | - | chr4.4:88152382-88152401 | MS.gene034042:intron | 45.0% |
| ! | TATATGCCCTTTGAAGGGAG+TGG | - | chr4.4:88152277-88152296 | MS.gene034042:intron | 45.0% |
| ! | TATCAAATGGGGTCTGGTTC+TGG | - | chr4.4:88151968-88151987 | MS.gene034042:CDS | 45.0% |
| ! | TGTTTTGCCATGGGAAGGTA+TGG | - | chr4.4:88153794-88153813 | MS.gene034042:intron | 45.0% |
| !! | CTCTTAAGTTGAGACTGCAG+GGG | + | chr4.4:88153829-88153848 | None:intergenic | 45.0% |
| !! | GCTCTTAAGTTGAGACTGCA+GGG | + | chr4.4:88153830-88153849 | None:intergenic | 45.0% |
| !! | GTTTGTTGTCCGACATGTGT+GGG | - | chr4.4:88154236-88154255 | MS.gene034042:intron | 45.0% |
| !! | TGCTCTTAAGTTGAGACTGC+AGG | + | chr4.4:88153831-88153850 | None:intergenic | 45.0% |
| !! | TGTTTGTTGTCCGACATGTG+TGG | - | chr4.4:88154235-88154254 | MS.gene034042:intron | 45.0% |
| !!! | CAACTTGTTTTGCCATGGGA+AGG | - | chr4.4:88153789-88153808 | MS.gene034042:intron | 45.0% |
| ACCCGACCTGTAGCTATACT+TGG | - | chr4.4:88153248-88153267 | MS.gene034042:intron | 50.0% | |
| AGCAGTTCCACTCCCTTCAA+AGG | + | chr4.4:88152287-88152306 | None:intergenic | 50.0% | |
| AGTATAGCTACAGGTCGGGT+AGG | + | chr4.4:88153248-88153267 | None:intergenic | 50.0% | |
| ATAGTCTGGCTGCATGGTCT+TGG | - | chr4.4:88152373-88152392 | MS.gene034042:intron | 50.0% | |
| CGACCTGTAGCTATACTTGG+TGG | - | chr4.4:88153251-88153270 | MS.gene034042:intron | 50.0% | |
| GAGACTTCAGCCATCTCTCT+AGG | + | chr4.4:88154842-88154861 | None:intergenic | 50.0% | |
| GATGGTCCAGATGATTGGGA+GGG | - | chr4.4:88153444-88153463 | MS.gene034042:CDS | 50.0% | |
| GCAACTATAGTCTGGCTGCA+TGG | - | chr4.4:88152367-88152386 | MS.gene034042:intron | 50.0% | |
| GCAGTTCCACTCCCTTCAAA+GGG | + | chr4.4:88152286-88152305 | None:intergenic | 50.0% | |
| GCCAGCTGATGGTACTTTCA+AGG | - | chr4.4:88153512-88153531 | MS.gene034042:intron | 50.0% | |
| GCCATTTCCATACCTTCCCA+TGG | + | chr4.4:88153804-88153823 | None:intergenic | 50.0% | |
| GCTCAAACCTTGTGTTCAGC+AGG | - | chr4.4:88154438-88154457 | MS.gene034042:intron | 50.0% | |
| GCTGAAGTCTCCAATTGGCT+TGG | - | chr4.4:88154851-88154870 | MS.gene034042:intron | 50.0% | |
| GGGATTGGAGGCTTCAGTAT+GGG | - | chr4.4:88153743-88153762 | MS.gene034042:intron | 50.0% | |
| TGATGGTCCAGATGATTGGG+AGG | - | chr4.4:88153443-88153462 | MS.gene034042:CDS | 50.0% | |
| TGGGATTGGAGGCTTCAGTA+TGG | - | chr4.4:88153742-88153761 | MS.gene034042:intron | 50.0% | |
| TGTGACTGTGATTGTGGTCG+CGG | + | chr4.4:88152198-88152217 | None:intergenic | 50.0% | |
| TTGTCAACTGAGCCAGCTGA+TGG | - | chr4.4:88153501-88153520 | MS.gene034042:intron | 50.0% | |
| ! | GCCATGGGAAGGTATGGAAA+TGG | - | chr4.4:88153800-88153819 | MS.gene034042:intron | 50.0% |
| !! | AATTGGCTTGGCTCATGCCT+GGG | - | chr4.4:88154863-88154882 | MS.gene034042:intron | 50.0% |
| !! | GCCTTGAAAGTACCATCAGC+TGG | + | chr4.4:88153516-88153535 | None:intergenic | 50.0% |
| !! | TTAAGTTGAGACTGCAGGGG+AGG | + | chr4.4:88153826-88153845 | None:intergenic | 50.0% |
| CAGGCATGAGCCAAGCCAAT+TGG | + | chr4.4:88154864-88154883 | None:intergenic | 55.0% | |
| ! | TGTCGGTGTCCCACACATGT+CGG | + | chr4.4:88154248-88154267 | None:intergenic | 55.0% |
| !! | ATTGGCTTGGCTCATGCCTG+GGG | - | chr4.4:88154864-88154883 | MS.gene034042:intron | 55.0% |
| !! | CAATTGGCTTGGCTCATGCC+TGG | - | chr4.4:88154862-88154881 | MS.gene034042:intron | 55.0% |
| ACAGGTCGGGTAGGAGCAGT+TGG | + | chr4.4:88153239-88153258 | None:intergenic | 60.0% | |
| CAGGTCGGGTAGGAGCAGTT+GGG | + | chr4.4:88153238-88153257 | None:intergenic | 60.0% | |
| TTGGCTCATGCCTGGGGCTT+GGG | - | chr4.4:88154870-88154889 | MS.gene034042:intron | 60.0% | |
| !! | GGACTAAGTGGCTGGCTTCC+AGG | - | chr4.4:88153857-88153876 | MS.gene034042:intron | 60.0% |
| !! | GTGGCTGGCTTCCAGGATCA+AGG | - | chr4.4:88153864-88153883 | MS.gene034042:intron | 60.0% |
| CTTGGCTCATGCCTGGGGCT+TGG | - | chr4.4:88154869-88154888 | MS.gene034042:intron | 65.0% | |
| TGGCTCATGCCTGGGGCTTG+GGG | - | chr4.4:88154871-88154890 | MS.gene034042:intron | 65.0% | |
| GGCTCATGCCTGGGGCTTGG+GGG | - | chr4.4:88154872-88154891 | MS.gene034042:intron | 70.0% | |
| TTGAGGGTCCCCCAAGCCCC+AGG | + | chr4.4:88154883-88154902 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 88151953 | 88154973 | 88151953 | ID=MS.gene034042 |
| chr4.4 | mRNA | 88151953 | 88154973 | 88151953 | ID=MS.gene034042.t1;Parent=MS.gene034042 |
| chr4.4 | exon | 88154937 | 88154973 | 88154937 | ID=MS.gene034042.t1.exon1;Parent=MS.gene034042.t1 |
| chr4.4 | CDS | 88154937 | 88154973 | 88154937 | ID=cds.MS.gene034042.t1;Parent=MS.gene034042.t1 |
| chr4.4 | exon | 88154516 | 88154633 | 88154516 | ID=MS.gene034042.t1.exon2;Parent=MS.gene034042.t1 |
| chr4.4 | CDS | 88154516 | 88154633 | 88154516 | ID=cds.MS.gene034042.t1;Parent=MS.gene034042.t1 |
| chr4.4 | exon | 88153947 | 88153983 | 88153947 | ID=MS.gene034042.t1.exon3;Parent=MS.gene034042.t1 |
| chr4.4 | CDS | 88153947 | 88153983 | 88153947 | ID=cds.MS.gene034042.t1;Parent=MS.gene034042.t1 |
| chr4.4 | exon | 88153636 | 88153705 | 88153636 | ID=MS.gene034042.t1.exon4;Parent=MS.gene034042.t1 |
| chr4.4 | CDS | 88153636 | 88153705 | 88153636 | ID=cds.MS.gene034042.t1;Parent=MS.gene034042.t1 |
| chr4.4 | exon | 88153404 | 88153508 | 88153404 | ID=MS.gene034042.t1.exon5;Parent=MS.gene034042.t1 |
| chr4.4 | CDS | 88153404 | 88153508 | 88153404 | ID=cds.MS.gene034042.t1;Parent=MS.gene034042.t1 |
| chr4.4 | exon | 88153041 | 88153191 | 88153041 | ID=MS.gene034042.t1.exon6;Parent=MS.gene034042.t1 |
| chr4.4 | CDS | 88153041 | 88153191 | 88153041 | ID=cds.MS.gene034042.t1;Parent=MS.gene034042.t1 |
| chr4.4 | exon | 88152798 | 88152880 | 88152798 | ID=MS.gene034042.t1.exon7;Parent=MS.gene034042.t1 |
| chr4.4 | CDS | 88152798 | 88152880 | 88152798 | ID=cds.MS.gene034042.t1;Parent=MS.gene034042.t1 |
| chr4.4 | exon | 88152433 | 88152526 | 88152433 | ID=MS.gene034042.t1.exon8;Parent=MS.gene034042.t1 |
| chr4.4 | CDS | 88152433 | 88152526 | 88152433 | ID=cds.MS.gene034042.t1;Parent=MS.gene034042.t1 |
| chr4.4 | exon | 88151953 | 88152106 | 88151953 | ID=MS.gene034042.t1.exon9;Parent=MS.gene034042.t1 |
| chr4.4 | CDS | 88151953 | 88152106 | 88151953 | ID=cds.MS.gene034042.t1;Parent=MS.gene034042.t1 |
| Gene Sequence |
| Protein sequence |
