Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene36243.t1 | XP_024631716.1 | 99.2 | 257 | 2 | 0 | 1 | 257 | 1 | 257 | 6.00E-147 | 530 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene36243.t1 | O95372 | 37.2 | 226 | 116 | 7 | 32 | 250 | 22 | 228 | 2.3e-30 | 134.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene36243.t1 | G7IMH6 | 99.2 | 257 | 2 | 0 | 1 | 257 | 1 | 257 | 4.3e-147 | 530.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene36243 | MS.gene86352 | PPI |
MS.gene36243 | MS.gene89061 | PPI |
MS.gene36243 | MS.gene79485 | PPI |
MS.gene36243 | MS.gene026794 | PPI |
MS.gene36243 | MS.gene067344 | PPI |
MS.gene36243 | MS.gene034042 | PPI |
MS.gene36243 | MS.gene034041 | PPI |
MS.gene36243 | MS.gene038854 | PPI |
MS.gene36243 | MS.gene37311 | PPI |
MS.gene36243 | MS.gene034040 | PPI |
MS.gene36243 | MS.gene83338 | PPI |
MS.gene36243 | MS.gene067343 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene36243.t1 | MTR_2g103140 | 99.222 | 257 | 2 | 0 | 1 | 257 | 1 | 257 | 0.0 | 522 |
MS.gene36243.t1 | MTR_4g011320 | 84.496 | 258 | 39 | 1 | 1 | 257 | 1 | 258 | 1.70e-158 | 441 |
MS.gene36243.t1 | MTR_2g054780 | 68.110 | 254 | 79 | 1 | 1 | 254 | 1 | 252 | 9.04e-131 | 370 |
MS.gene36243.t1 | MTR_3g107630 | 70.293 | 239 | 71 | 0 | 17 | 255 | 17 | 255 | 3.00e-123 | 351 |
MS.gene36243.t1 | MTR_2g054780 | 65.748 | 254 | 78 | 2 | 1 | 254 | 1 | 245 | 5.67e-123 | 350 |
MS.gene36243.t1 | MTR_4g132890 | 30.045 | 223 | 129 | 7 | 37 | 250 | 7 | 211 | 4.21e-21 | 88.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene36243.t1 | AT1G52700 | 76.772 | 254 | 58 | 1 | 1 | 254 | 1 | 253 | 2.54e-141 | 397 |
MS.gene36243.t1 | AT1G52700 | 76.772 | 254 | 58 | 1 | 1 | 254 | 1 | 253 | 2.54e-141 | 397 |
MS.gene36243.t1 | AT3G15650 | 72.527 | 273 | 55 | 2 | 1 | 254 | 1 | 272 | 4.75e-138 | 389 |
MS.gene36243.t1 | AT1G52700 | 77.869 | 244 | 53 | 1 | 11 | 254 | 2 | 244 | 6.68e-137 | 385 |
MS.gene36243.t1 | AT3G15650 | 77.953 | 254 | 55 | 1 | 1 | 254 | 1 | 253 | 1.90e-133 | 377 |
MS.gene36243.t1 | AT3G15650 | 78.947 | 247 | 51 | 1 | 8 | 254 | 18 | 263 | 2.30e-130 | 369 |
MS.gene36243.t1 | AT5G20060 | 66.929 | 254 | 82 | 2 | 1 | 254 | 1 | 252 | 7.29e-130 | 368 |
MS.gene36243.t1 | AT5G20060 | 66.929 | 254 | 82 | 2 | 1 | 254 | 1 | 252 | 7.29e-130 | 368 |
MS.gene36243.t1 | AT5G20060 | 66.929 | 254 | 82 | 2 | 1 | 254 | 1 | 252 | 7.29e-130 | 368 |
MS.gene36243.t1 | AT5G20060 | 66.929 | 254 | 82 | 2 | 1 | 254 | 1 | 252 | 7.29e-130 | 368 |
MS.gene36243.t1 | AT1G52700 | 77.612 | 201 | 45 | 0 | 54 | 254 | 1 | 201 | 3.07e-111 | 319 |
MS.gene36243.t1 | AT1G52700 | 78.061 | 196 | 42 | 1 | 1 | 196 | 1 | 195 | 7.66e-109 | 313 |
MS.gene36243.t1 | AT1G52700 | 78.061 | 196 | 42 | 1 | 1 | 196 | 1 | 195 | 7.66e-109 | 313 |
MS.gene36243.t1 | AT1G51300 | 45.228 | 241 | 124 | 2 | 16 | 254 | 30 | 264 | 6.91e-69 | 214 |
MS.gene36243.t1 | AT1G51300 | 46.009 | 213 | 107 | 2 | 16 | 226 | 30 | 236 | 6.72e-62 | 196 |
MS.gene36243.t1 | AT1G52695 | 43.830 | 235 | 117 | 5 | 19 | 252 | 11 | 231 | 2.45e-56 | 180 |
MS.gene36243.t1 | AT1G51300 | 46.429 | 168 | 82 | 2 | 16 | 181 | 19 | 180 | 5.65e-46 | 152 |
MS.gene36243.t1 | AT1G52470 | 37.946 | 224 | 121 | 5 | 9 | 232 | 3 | 208 | 2.70e-38 | 134 |
MS.gene36243.t1 | AT1G52460 | 39.574 | 235 | 109 | 7 | 26 | 253 | 13 | 221 | 1.43e-37 | 132 |
MS.gene36243.t1 | AT1G47786 | 46.296 | 162 | 74 | 4 | 14 | 170 | 33 | 186 | 3.62e-37 | 129 |
MS.gene36243.t1 | AT1G52470 | 37.436 | 195 | 104 | 4 | 9 | 203 | 3 | 179 | 1.57e-32 | 117 |
MS.gene36243.t1 | AT1G52470 | 38.298 | 188 | 98 | 4 | 9 | 196 | 3 | 172 | 1.72e-32 | 117 |
MS.gene36243.t1 | AT1G52440 | 35.622 | 233 | 92 | 6 | 26 | 253 | 17 | 196 | 1.21e-30 | 113 |
MS.gene36243.t1 | AT1G47780 | 52.727 | 110 | 49 | 1 | 61 | 170 | 23 | 129 | 3.00e-26 | 99.8 |
MS.gene36243.t1 | AT4G22300 | 31.839 | 223 | 125 | 7 | 37 | 250 | 51 | 255 | 7.17e-24 | 97.1 |
MS.gene36243.t1 | AT4G22305 | 31.390 | 223 | 126 | 7 | 37 | 250 | 6 | 210 | 1.64e-21 | 90.1 |
Find 80 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCTCTTAAATTTACAGGATA+TGG | 0.124916 | 2.1:+2526688 | None:intergenic |
GGACTCAGTGGTTGGCTTCC+AGG | 0.228261 | 2.1:-2526658 | MS.gene36243:CDS |
ACAACTGCTCTTAAATTTAC+AGG | 0.241676 | 2.1:+2526682 | None:intergenic |
ATGATATGATACAGATAAAA+TGG | 0.253421 | 2.1:-2527242 | MS.gene36243:intron |
ATTCCGTGACACTGTAAAAT+TGG | 0.284885 | 2.1:+2526439 | None:intergenic |
CTGCAGCTCATCTCAGTTGT+TGG | 0.306667 | 2.1:-2527420 | MS.gene36243:intron |
GATTTCATCTTACCCTTCAT+AGG | 0.341429 | 2.1:+2525981 | None:intergenic |
CAGAAGATGGTCCAGATGAT+TGG | 0.348652 | 2.1:-2527047 | MS.gene36243:CDS |
AACATCAAGCTACTATAGTT+TGG | 0.349013 | 2.1:-2528120 | MS.gene36243:CDS |
ACTCGACGAACTTTCGAATT+CGG | 0.359043 | 2.1:-2528172 | MS.gene36243:CDS |
CTCGACGAACTTTCGAATTC+GGG | 0.362164 | 2.1:-2528171 | MS.gene36243:CDS |
TCCAGATGATTGGGAGGGTT+TGG | 0.362266 | 2.1:-2527037 | MS.gene36243:CDS |
ACCCGTCCCGTGGCGATACT+TGG | 0.362645 | 2.1:-2527201 | MS.gene36243:CDS |
ACCTGGCTTAGTTCAAGGTT+GGG | 0.374896 | 2.1:-2525843 | MS.gene36243:CDS |
TCGAAACCCTGCTGAACTTA+AGG | 0.379498 | 2.1:+2526020 | None:intergenic |
AGATTTCTCTCCATACTTGC+AGG | 0.384767 | 2.1:+2526050 | None:intergenic |
CTGCTATCGTGTAGGAGCTT+AGG | 0.385731 | 2.1:-2526511 | MS.gene36243:intron |
TTGCATGGACTTGGTGATAA+TGG | 0.386499 | 2.1:-2528097 | MS.gene36243:CDS |
CTCTTAAATTTACAGGATAT+GGG | 0.394710 | 2.1:+2526689 | None:intergenic |
TGCTATCGTGTAGGAGCTTA+GGG | 0.407200 | 2.1:-2526510 | MS.gene36243:intron |
TTTCCACCTGGCTTAGTTCA+AGG | 0.409660 | 2.1:-2525848 | MS.gene36243:CDS |
CACCTGGCTTAGTTCAAGGT+TGG | 0.410510 | 2.1:-2525844 | MS.gene36243:CDS |
GGCATTGGAGGGTTCAGCAT+GGG | 0.423064 | 2.1:-2526772 | MS.gene36243:CDS |
TCCAAACCCTCCCAATCATC+TGG | 0.433424 | 2.1:+2527036 | None:intergenic |
AGAAGATGGTCCAGATGATT+GGG | 0.441840 | 2.1:-2527046 | MS.gene36243:CDS |
GCTCAATCCTTAAGTTCAGC+AGG | 0.445139 | 2.1:-2526027 | MS.gene36243:CDS |
GTAAATTTAAGAGCAGTTGT+TGG | 0.448866 | 2.1:-2526679 | MS.gene36243:CDS |
GATGTAGTACCCTGCAAGTA+TGG | 0.451238 | 2.1:-2526060 | MS.gene36243:CDS |
GAAACTTCACCCATCTCTCT+TGG | 0.455198 | 2.1:+2525867 | None:intergenic |
TGCTATGCCATGGGAAGGTA+TGG | 0.455698 | 2.1:-2526721 | MS.gene36243:CDS |
AGTTCAAGGTTGGGACTTGA+AGG | 0.458085 | 2.1:-2525834 | MS.gene36243:CDS |
AGTCACGCGCATTCTCATAT+CGG | 0.472684 | 2.1:-2528668 | MS.gene36243:CDS |
ACGGGACGGGTAGGAGCAGT+AGG | 0.474505 | 2.1:+2527213 | None:intergenic |
GTTGCATTCAAATCCTATGA+AGG | 0.479609 | 2.1:-2525994 | MS.gene36243:CDS |
ATAGTTTGGTTGCATGGACT+TGG | 0.482576 | 2.1:-2528106 | MS.gene36243:CDS |
AATATAGGATACCTTGATCC+TGG | 0.497671 | 2.1:+2526640 | None:intergenic |
GCCATGGGAAGGTATGGAAA+TGG | 0.499012 | 2.1:-2526715 | MS.gene36243:CDS |
TGGCATTGGAGGGTTCAGCA+TGG | 0.500431 | 2.1:-2526773 | MS.gene36243:CDS |
GCTACTATAGTTTGGTTGCA+TGG | 0.500682 | 2.1:-2528112 | MS.gene36243:CDS |
GCGCATTCTCATATCGGCTC+TGG | 0.502067 | 2.1:-2528662 | MS.gene36243:intron |
AATATTCTTACATTTGGAAG+TGG | 0.504794 | 2.1:+2527389 | None:intergenic |
ACCAAGTATCGCCACGGGAC+GGG | 0.505652 | 2.1:+2527200 | None:intergenic |
ACAGTGAAGGTTGGCATTGG+AGG | 0.514761 | 2.1:-2526784 | MS.gene36243:intron |
GTGGTTGGCTTCCAGGATCA+AGG | 0.515697 | 2.1:-2526651 | MS.gene36243:intron |
CAGTTGTTGGACTCAGTGGT+TGG | 0.515891 | 2.1:-2526666 | MS.gene36243:CDS |
GAAAAGTACCAACCATCTGC+TGG | 0.518011 | 2.1:+2526973 | None:intergenic |
CTCTGCAACATGCTATGCCA+TGG | 0.520478 | 2.1:-2526731 | MS.gene36243:CDS |
ACACATGTAGTGAGGCCTAA+AGG | 0.529217 | 2.1:-2528145 | MS.gene36243:CDS |
TCCCAACCTTGAACTAAGCC+AGG | 0.530276 | 2.1:+2525842 | None:intergenic |
CGTCCCGTGGCGATACTTGG+TGG | 0.534524 | 2.1:-2527198 | MS.gene36243:CDS |
ATCTGCAGGGTTTGATGTGG+GGG | 0.542921 | 2.1:-2527076 | MS.gene36243:intron |
TAATCTGCAGGGTTTGATGT+GGG | 0.550311 | 2.1:-2527078 | MS.gene36243:intron |
CAGTGAAGGTTGGCATTGGA+GGG | 0.550934 | 2.1:-2526783 | MS.gene36243:CDS |
CTCAATCCTTAAGTTCAGCA+GGG | 0.560404 | 2.1:-2526026 | MS.gene36243:CDS |
TACACAGTTCCAAGAGAGAT+GGG | 0.566504 | 2.1:-2525876 | MS.gene36243:CDS |
GCCATTTCCATACCTTCCCA+TGG | 0.566957 | 2.1:+2526714 | None:intergenic |
CACCAAGTATCGCCACGGGA+CGG | 0.567381 | 2.1:+2527199 | None:intergenic |
TTGCATTCAAATCCTATGAA+GGG | 0.567894 | 2.1:-2525993 | MS.gene36243:intron |
GTGACAGTGAAGGTTGGCAT+TGG | 0.569578 | 2.1:-2526787 | MS.gene36243:intron |
AGAGCAGTTGTTGGACTCAG+TGG | 0.571266 | 2.1:-2526670 | MS.gene36243:CDS |
TTGTCAACAGAGCCAGCAGA+TGG | 0.578833 | 2.1:-2526985 | MS.gene36243:intron |
GACTTGGTGATAATGGTTTG+AGG | 0.581699 | 2.1:-2528090 | MS.gene36243:intron |
ATAATCTGCAGGGTTTGATG+TGG | 0.583692 | 2.1:-2527079 | MS.gene36243:intron |
TTACACAGTTCCAAGAGAGA+TGG | 0.585012 | 2.1:-2525877 | MS.gene36243:CDS |
AATCTGCAGGGTTTGATGTG+GGG | 0.587059 | 2.1:-2527077 | MS.gene36243:intron |
CGGGACGGGTAGGAGCAGTA+GGG | 0.588956 | 2.1:+2527214 | None:intergenic |
GATTTCTCTCCATACTTGCA+GGG | 0.589604 | 2.1:+2526051 | None:intergenic |
TACTGCTCCTACCCGTCCCG+TGG | 0.594923 | 2.1:-2527211 | MS.gene36243:CDS |
AAGTGTCACATGAAGCGAGA+AGG | 0.615847 | 2.1:-2526477 | MS.gene36243:CDS |
TCTGCAACATGCTATGCCAT+GGG | 0.616412 | 2.1:-2526730 | MS.gene36243:CDS |
AGTATCGCCACGGGACGGGT+AGG | 0.617013 | 2.1:+2527204 | None:intergenic |
CAACATGCTATGCCATGGGA+AGG | 0.620791 | 2.1:-2526726 | MS.gene36243:CDS |
AGATGGTCCAGATGATTGGG+AGG | 0.628482 | 2.1:-2527043 | MS.gene36243:CDS |
TATTATGTGACAGTGAAGGT+TGG | 0.630244 | 2.1:-2526793 | MS.gene36243:intron |
AGATGGGTGAAGTTTCCACC+TGG | 0.640732 | 2.1:-2525860 | MS.gene36243:CDS |
AAAACCACCAAGTATCGCCA+CGG | 0.640799 | 2.1:+2527194 | None:intergenic |
GATGGTCCAGATGATTGGGA+GGG | 0.647020 | 2.1:-2527042 | MS.gene36243:CDS |
AAACCACCAAGTATCGCCAC+GGG | 0.651184 | 2.1:+2527195 | None:intergenic |
TCGGGAAGACACATGTAGTG+AGG | 0.680314 | 2.1:-2528153 | MS.gene36243:CDS |
CAACCTTGAACTAAGCCAGG+TGG | 0.690014 | 2.1:+2525845 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAAATAAATATTCTTACATT+TGG | + | chr2.1:2527112-2527131 | None:intergenic | 10.0% |
!!! | TCAAAATATTATTTTAGTTA+TGG | + | chr2.1:2527191-2527210 | None:intergenic | 10.0% |
!! | AAAGAATATGAACTATATTA+GGG | - | chr2.1:2526681-2526700 | MS.gene36243:CDS | 15.0% |
!! | AAATAGTAGTGTTATAATAT+AGG | + | chr2.1:2527870-2527889 | None:intergenic | 15.0% |
!! | CAAAAAATTTATAGCATATT+TGG | - | chr2.1:2528329-2528348 | MS.gene36243:intron | 15.0% |
!! | GATAAGAGAAAATAATAAAA+TGG | + | chr2.1:2525871-2525890 | None:intergenic | 15.0% |
!! | TATATAATATGAATAGAAAC+TGG | - | chr2.1:2526863-2526882 | MS.gene36243:intron | 15.0% |
!!! | ATAACACATTAACATTTTTT+TGG | - | chr2.1:2527637-2527656 | MS.gene36243:intron | 15.0% |
!! | AAAGTTGTGATTATAATTGT+TGG | - | chr2.1:2526780-2526799 | MS.gene36243:CDS | 20.0% |
!! | AAGAATATGAACTATATTAG+GGG | - | chr2.1:2526682-2526701 | MS.gene36243:CDS | 20.0% |
!! | AATTTATAGCATATTTGGAA+TGG | - | chr2.1:2528334-2528353 | MS.gene36243:intron | 20.0% |
!! | ACAAAGAAAAACAGAAATAT+TGG | + | chr2.1:2526593-2526612 | None:intergenic | 20.0% |
!! | ATAGTAATAATAGTAGCAAA+AGG | + | chr2.1:2528362-2528381 | None:intergenic | 20.0% |
!! | ATGAAAGATAAAACCATTAT+GGG | - | chr2.1:2526658-2526677 | MS.gene36243:CDS | 20.0% |
!! | ATGATATGATACAGATAAAA+TGG | - | chr2.1:2527250-2527269 | MS.gene36243:intron | 20.0% |
!! | GAAAGAATATGAACTATATT+AGG | - | chr2.1:2526680-2526699 | MS.gene36243:CDS | 20.0% |
!! | TACTTAAAACATTCAACATA+AGG | + | chr2.1:2526712-2526731 | None:intergenic | 20.0% |
!! | TATGAAAGATAAAACCATTA+TGG | - | chr2.1:2526657-2526676 | MS.gene36243:CDS | 20.0% |
!! | TCTTATATACTGATATAACT+AGG | - | chr2.1:2528093-2528112 | MS.gene36243:CDS | 20.0% |
!! | TTAATTGATGTCAGATTTAA+TGG | - | chr2.1:2527010-2527029 | MS.gene36243:CDS | 20.0% |
!!! | ATGGTTTTATCTTTCATATA+CGG | + | chr2.1:2526655-2526674 | None:intergenic | 20.0% |
!!! | ATGTTAGACAATTTTTATCT+GGG | - | chr2.1:2526976-2526995 | MS.gene36243:intron | 20.0% |
!!! | ATTTTTTTGGACCTTAATTA+AGG | - | chr2.1:2527650-2527669 | MS.gene36243:intron | 20.0% |
!!! | TATGTTAGACAATTTTTATC+TGG | - | chr2.1:2526975-2526994 | MS.gene36243:intron | 20.0% |
!!! | TCAATTACATGATCTTTTTT+TGG | - | chr2.1:2526078-2526097 | MS.gene36243:intron | 20.0% |
! | AAAAGATCATGTAATTGACT+TGG | + | chr2.1:2526076-2526095 | None:intergenic | 25.0% |
! | AATATTCTTACATTTGGAAG+TGG | + | chr2.1:2527106-2527125 | None:intergenic | 25.0% |
! | ATTATCTTAAATGCTTCTCT+AGG | - | chr2.1:2527151-2527170 | MS.gene36243:intron | 25.0% |
! | ATTGATTACAATCCTTCAAA+CGG | + | chr2.1:2526200-2526219 | None:intergenic | 25.0% |
! | CTAAACAAGTCTAATTAACT+TGG | - | chr2.1:2527380-2527399 | MS.gene36243:intron | 25.0% |
! | CTCTTAAATTTACAGGATAT+GGG | + | chr2.1:2527806-2527825 | None:intergenic | 25.0% |
! | TCAGTTTCACAATAATCATT+TGG | - | chr2.1:2527943-2527962 | MS.gene36243:intron | 25.0% |
!! | AAACATGCTTATCTGATTTT+TGG | - | chr2.1:2527037-2527056 | MS.gene36243:CDS | 25.0% |
!! | TCTTTCTTGTTTACAATTAC+AGG | - | chr2.1:2526287-2526306 | MS.gene36243:intron | 25.0% |
!! | TCTTTTGTCAATACTCATAT+AGG | + | chr2.1:2526842-2526861 | None:intergenic | 25.0% |
!!! | ATTCTTTGTTGTTTTTAGTG+TGG | - | chr2.1:2526900-2526919 | MS.gene36243:intron | 25.0% |
!!! | TTAAGTATTGAAGTTCTTTC+TGG | - | chr2.1:2526725-2526744 | MS.gene36243:CDS | 25.0% |
AAAGAGAAAAGGAAAAAGAG+AGG | + | chr2.1:2526557-2526576 | None:intergenic | 30.0% | |
AAATCAGATAAGCATGTTTC+TGG | + | chr2.1:2527036-2527055 | None:intergenic | 30.0% | |
AACATCAAGCTACTATAGTT+TGG | - | chr2.1:2526372-2526391 | MS.gene36243:intron | 30.0% | |
AAGTACAAAACAGAACAAGT+AGG | + | chr2.1:2526517-2526536 | None:intergenic | 30.0% | |
ACAACTGCTCTTAAATTTAC+AGG | + | chr2.1:2527813-2527832 | None:intergenic | 30.0% | |
ACATATAGCAGTGTTAGAAA+GGG | + | chr2.1:2526440-2526459 | None:intergenic | 30.0% | |
ACCGTACAATCTCATATTAA+CGG | - | chr2.1:2528199-2528218 | MS.gene36243:intron | 30.0% | |
ACCGTTAATATGAGATTGTA+CGG | + | chr2.1:2528203-2528222 | None:intergenic | 30.0% | |
AGAGAAGAGTAAAAGAGAAA+AGG | + | chr2.1:2526568-2526587 | None:intergenic | 30.0% | |
AGTTTGAGCATTTCAATGTA+TGG | - | chr2.1:2526941-2526960 | MS.gene36243:intron | 30.0% | |
ATAAAAATTACATGCAGTGC+AGG | + | chr2.1:2527325-2527344 | None:intergenic | 30.0% | |
GATTATAATTGTTGGAAGCT+TGG | - | chr2.1:2526788-2526807 | MS.gene36243:intron | 30.0% | |
GCTCTTAAATTTACAGGATA+TGG | + | chr2.1:2527807-2527826 | None:intergenic | 30.0% | |
GTAAATTTAAGAGCAGTTGT+TGG | - | chr2.1:2527813-2527832 | MS.gene36243:intron | 30.0% | |
GTTCATATTCTTTCCCATAA+TGG | + | chr2.1:2526674-2526693 | None:intergenic | 30.0% | |
TAAAAATTACATGCAGTGCA+GGG | + | chr2.1:2527324-2527343 | None:intergenic | 30.0% | |
TAATCATTTGGCTAATGTGT+TGG | - | chr2.1:2527955-2527974 | MS.gene36243:intron | 30.0% | |
TCATCATAAGACATAACCAT+TGG | - | chr2.1:2526480-2526499 | MS.gene36243:CDS | 30.0% | |
TGATTATTATGTGACAGTGA+AGG | - | chr2.1:2527695-2527714 | MS.gene36243:intron | 30.0% | |
TGATTGAACAATAATCTGCA+GGG | - | chr2.1:2527403-2527422 | MS.gene36243:CDS | 30.0% | |
TTGCATTCAAATCCTATGAA+GGG | - | chr2.1:2528499-2528518 | MS.gene36243:intron | 30.0% | |
! | AACTTCAATGCAAATTTGCT+AGG | - | chr2.1:2526173-2526192 | MS.gene36243:intron | 30.0% |
! | TGTGATTTTTGCATAAGCTA+CGG | + | chr2.1:2526006-2526025 | None:intergenic | 30.0% |
! | TTACCAATTTTACAGTGTCA+CGG | - | chr2.1:2528050-2528069 | MS.gene36243:intron | 30.0% |
! | TTTTGGACCTTAATTAAGGT+TGG | - | chr2.1:2527654-2527673 | MS.gene36243:intron | 30.0% |
!! | ATAAAAGGGTGCTTAGATAT+AGG | - | chr2.1:2527601-2527620 | MS.gene36243:intron | 30.0% |
!! | GATCAAAGCATTCATTTTGT+AGG | - | chr2.1:2528405-2528424 | MS.gene36243:intron | 30.0% |
!! | TAAAAGGGTGCTTAGATATA+GGG | - | chr2.1:2527602-2527621 | MS.gene36243:intron | 30.0% |
!! | TAATTGACTTGGTGCATATT+TGG | + | chr2.1:2526065-2526084 | None:intergenic | 30.0% |
AAAACAGAACAAGTAGGAGA+AGG | + | chr2.1:2526511-2526530 | None:intergenic | 35.0% | |
AAAAGGAAAAAGAGAGGTTG+TGG | + | chr2.1:2526551-2526570 | None:intergenic | 35.0% | |
AATATAGGATACCTTGATCC+TGG | + | chr2.1:2527855-2527874 | None:intergenic | 35.0% | |
ACCGTTTGCCTCTAATAAAA+GGG | - | chr2.1:2527587-2527606 | MS.gene36243:intron | 35.0% | |
ATTCATGCAAGTTGCAAAGA+AGG | + | chr2.1:2525893-2525912 | None:intergenic | 35.0% | |
ATTCCGTGACACTGTAAAAT+TGG | + | chr2.1:2528056-2528075 | None:intergenic | 35.0% | |
CAAGCTACCAACCTTAATTA+AGG | + | chr2.1:2527664-2527683 | None:intergenic | 35.0% | |
CTGATAGATGTCAAAACATG+AGG | + | chr2.1:2526230-2526249 | None:intergenic | 35.0% | |
GAACAGTTATCTCAGTTTGT+TGG | - | chr2.1:2528567-2528586 | MS.gene36243:intron | 35.0% | |
GACATATAGCAGTGTTAGAA+AGG | + | chr2.1:2526441-2526460 | None:intergenic | 35.0% | |
GATTGCTATAAGTGCATGTT+TGG | - | chr2.1:2525924-2525943 | MS.gene36243:intron | 35.0% | |
GATTTCATCTTACCCTTCAT+AGG | + | chr2.1:2528514-2528533 | None:intergenic | 35.0% | |
GTGATTGAACAATAATCTGC+AGG | - | chr2.1:2527402-2527421 | MS.gene36243:CDS | 35.0% | |
GTTGCATTCAAATCCTATGA+AGG | - | chr2.1:2528498-2528517 | MS.gene36243:intron | 35.0% | |
TATTATGTGACAGTGAAGGT+TGG | - | chr2.1:2527699-2527718 | MS.gene36243:intron | 35.0% | |
TCAGCAGAATATATTCCATG+TGG | + | chr2.1:2526758-2526777 | None:intergenic | 35.0% | |
! | ACCCTTTTATTAGAGGCAAA+CGG | + | chr2.1:2527591-2527610 | None:intergenic | 35.0% |
! | GTAGCTTGATGTTTTCCTTT+AGG | + | chr2.1:2526365-2526384 | None:intergenic | 35.0% |
! | TCTAAGCACCCTTTTATTAG+AGG | + | chr2.1:2527598-2527617 | None:intergenic | 35.0% |
! | TTTTACCACTGCATGAAATC+TGG | - | chr2.1:2528253-2528272 | MS.gene36243:intron | 35.0% |
AAGAGAGGTTGTGGAAAGAA+AGG | + | chr2.1:2526542-2526561 | None:intergenic | 40.0% | |
ACTCGACGAACTTTCGAATT+CGG | - | chr2.1:2526320-2526339 | MS.gene36243:intron | 40.0% | |
AGAAGATGGTCCAGATGATT+GGG | - | chr2.1:2527446-2527465 | MS.gene36243:intron | 40.0% | |
AGAATCCAGATTTCATGCAG+TGG | + | chr2.1:2528261-2528280 | None:intergenic | 40.0% | |
AGATTTCTCTCCATACTTGC+AGG | + | chr2.1:2528445-2528464 | None:intergenic | 40.0% | |
ATAATCTGCAGGGTTTGATG+TGG | - | chr2.1:2527413-2527432 | MS.gene36243:CDS | 40.0% | |
ATAGTTTGGTTGCATGGACT+TGG | - | chr2.1:2526386-2526405 | MS.gene36243:intron | 40.0% | |
CACCGTTTGCCTCTAATAAA+AGG | - | chr2.1:2527586-2527605 | MS.gene36243:intron | 40.0% | |
CTCAATCCTTAAGTTCAGCA+GGG | - | chr2.1:2528466-2528485 | MS.gene36243:intron | 40.0% | |
GATTTCTCTCCATACTTGCA+GGG | + | chr2.1:2528444-2528463 | None:intergenic | 40.0% | |
GCAAACGGTGCTTACATATA+GGG | + | chr2.1:2527576-2527595 | None:intergenic | 40.0% | |
GCTACTATAGTTTGGTTGCA+TGG | - | chr2.1:2526380-2526399 | MS.gene36243:intron | 40.0% | |
GTAGGAGAAGGAATAACCAA+TGG | + | chr2.1:2526499-2526518 | None:intergenic | 40.0% | |
TAATCTGCAGGGTTTGATGT+GGG | - | chr2.1:2527414-2527433 | MS.gene36243:CDS | 40.0% | |
TACACAGTTCCAAGAGAGAT+GGG | - | chr2.1:2528616-2528635 | MS.gene36243:intron | 40.0% | |
TGCTTAGATATAGGGACAGA+GGG | - | chr2.1:2527610-2527629 | MS.gene36243:intron | 40.0% | |
TTACACAGTTCCAAGAGAGA+TGG | - | chr2.1:2528615-2528634 | MS.gene36243:intron | 40.0% | |
!! | AATTTGCTAGGTCCGTTTGA+AGG | - | chr2.1:2526185-2526204 | MS.gene36243:intron | 40.0% |
!! | CAGATGGTTGGTACTTTTCA+AGG | - | chr2.1:2527523-2527542 | MS.gene36243:intron | 40.0% |
!! | CTTTCTGGTTAGATTCCACA+TGG | - | chr2.1:2526740-2526759 | MS.gene36243:CDS | 40.0% |
!! | GACTTGGTGATAATGGTTTG+AGG | - | chr2.1:2526402-2526421 | MS.gene36243:intron | 40.0% |
!! | TTGCATGGACTTGGTGATAA+TGG | - | chr2.1:2526395-2526414 | MS.gene36243:intron | 40.0% |
AAGTGTCACATGAAGCGAGA+AGG | - | chr2.1:2528015-2528034 | MS.gene36243:intron | 45.0% | |
AATCTGCAGGGTTTGATGTG+GGG | - | chr2.1:2527415-2527434 | MS.gene36243:CDS | 45.0% | |
ACACATGTAGTGAGGCCTAA+AGG | - | chr2.1:2526347-2526366 | MS.gene36243:intron | 45.0% | |
ACCTGGCTTAGTTCAAGGTT+GGG | - | chr2.1:2528649-2528668 | MS.gene36243:intron | 45.0% | |
ACGGTGCTTACATATAGGGA+CGG | + | chr2.1:2527572-2527591 | None:intergenic | 45.0% | |
AGTCACGCGCATTCTCATAT+CGG | - | chr2.1:2525824-2525843 | MS.gene36243:CDS | 45.0% | |
AGTTCAAGGTTGGGACTTGA+AGG | - | chr2.1:2528658-2528677 | MS.gene36243:intron | 45.0% | |
CAGAAGATGGTCCAGATGAT+TGG | - | chr2.1:2527445-2527464 | MS.gene36243:intron | 45.0% | |
CTCGACGAACTTTCGAATTC+GGG | - | chr2.1:2526321-2526340 | MS.gene36243:intron | 45.0% | |
GAAACTTCACCCATCTCTCT+TGG | + | chr2.1:2528628-2528647 | None:intergenic | 45.0% | |
GATGTAGTACCCTGCAAGTA+TGG | - | chr2.1:2528432-2528451 | MS.gene36243:intron | 45.0% | |
GCTCAATCCTTAAGTTCAGC+AGG | - | chr2.1:2528465-2528484 | MS.gene36243:intron | 45.0% | |
GGCAAACGGTGCTTACATAT+AGG | + | chr2.1:2527577-2527596 | None:intergenic | 45.0% | |
GTGCTTAGATATAGGGACAG+AGG | - | chr2.1:2527609-2527628 | MS.gene36243:intron | 45.0% | |
GTTGGAATCTGCTATCGTGT+AGG | - | chr2.1:2527973-2527992 | MS.gene36243:intron | 45.0% | |
TCAGCAATGCAACATGCTAG+AGG | + | chr2.1:2526154-2526173 | None:intergenic | 45.0% | |
TCGAAACCCTGCTGAACTTA+AGG | + | chr2.1:2528475-2528494 | None:intergenic | 45.0% | |
TCTGCAACATGCTATGCCAT+GGG | - | chr2.1:2527762-2527781 | MS.gene36243:intron | 45.0% | |
TGCTATCGTGTAGGAGCTTA+GGG | - | chr2.1:2527982-2528001 | MS.gene36243:intron | 45.0% | |
TGCTTACATATAGGGACGGA+GGG | + | chr2.1:2527568-2527587 | None:intergenic | 45.0% | |
TTTCCACCTGGCTTAGTTCA+AGG | - | chr2.1:2528644-2528663 | MS.gene36243:intron | 45.0% | |
! | AAAACCACCAAGTATCGCCA+CGG | + | chr2.1:2527301-2527320 | None:intergenic | 45.0% |
! | GTGCATGTTTGGAGTCACAA+CGG | - | chr2.1:2525935-2525954 | MS.gene36243:intron | 45.0% |
!! | GAAAAGTACCAACCATCTGC+TGG | + | chr2.1:2527522-2527541 | None:intergenic | 45.0% |
!! | TGTTGGTTTCTGATGCATGC+AGG | - | chr2.1:2528584-2528603 | MS.gene36243:intron | 45.0% |
!! | TAAATAAATTAACAAAAATT+AGG | + | chr2.1:2527355-2527374 | None:intergenic | 5.0% |
!!! | AATTTTTGTTAATTTATTTA+GGG | - | chr2.1:2527355-2527374 | MS.gene36243:intron | 5.0% |
!!! | TAATTTTTGTTAATTTATTT+AGG | - | chr2.1:2527354-2527373 | MS.gene36243:intron | 5.0% |
AGAGCAGTTGTTGGACTCAG+TGG | - | chr2.1:2527822-2527841 | MS.gene36243:intron | 50.0% | |
AGATGGGTGAAGTTTCCACC+TGG | - | chr2.1:2528632-2528651 | MS.gene36243:intron | 50.0% | |
AGATGGTCCAGATGATTGGG+AGG | - | chr2.1:2527449-2527468 | MS.gene36243:intron | 50.0% | |
ATCTGCAGGGTTTGATGTGG+GGG | - | chr2.1:2527416-2527435 | MS.gene36243:CDS | 50.0% | |
CAACATGCTATGCCATGGGA+AGG | - | chr2.1:2527766-2527785 | MS.gene36243:intron | 50.0% | |
CAACCTTGAACTAAGCCAGG+TGG | + | chr2.1:2528650-2528669 | None:intergenic | 50.0% | |
CACCTGGCTTAGTTCAAGGT+TGG | - | chr2.1:2528648-2528667 | MS.gene36243:intron | 50.0% | |
CAGTTGTTGGACTCAGTGGT+TGG | - | chr2.1:2527826-2527845 | MS.gene36243:intron | 50.0% | |
CTCTGCAACATGCTATGCCA+TGG | - | chr2.1:2527761-2527780 | MS.gene36243:intron | 50.0% | |
CTGCAGCTCATCTCAGTTGT+TGG | - | chr2.1:2527072-2527091 | MS.gene36243:intron | 50.0% | |
CTGCTATCGTGTAGGAGCTT+AGG | - | chr2.1:2527981-2528000 | MS.gene36243:intron | 50.0% | |
GATGGTCCAGATGATTGGGA+GGG | - | chr2.1:2527450-2527469 | MS.gene36243:intron | 50.0% | |
GCCATTTCCATACCTTCCCA+TGG | + | chr2.1:2527781-2527800 | None:intergenic | 50.0% | |
GTGACAGTGAAGGTTGGCAT+TGG | - | chr2.1:2527705-2527724 | MS.gene36243:intron | 50.0% | |
GTGCTTACATATAGGGACGG+AGG | + | chr2.1:2527569-2527588 | None:intergenic | 50.0% | |
GTTTCTGATGCATGCAGGCT+TGG | - | chr2.1:2528589-2528608 | MS.gene36243:intron | 50.0% | |
TCCAAACCCTCCCAATCATC+TGG | + | chr2.1:2527459-2527478 | None:intergenic | 50.0% | |
TCCAGATGATTGGGAGGGTT+TGG | - | chr2.1:2527455-2527474 | MS.gene36243:intron | 50.0% | |
TCCCAACCTTGAACTAAGCC+AGG | + | chr2.1:2528653-2528672 | None:intergenic | 50.0% | |
TCGGGAAGACACATGTAGTG+AGG | - | chr2.1:2526339-2526358 | MS.gene36243:intron | 50.0% | |
TGCTATGCCATGGGAAGGTA+TGG | - | chr2.1:2527771-2527790 | MS.gene36243:intron | 50.0% | |
TTGTCAACAGAGCCAGCAGA+TGG | - | chr2.1:2527507-2527526 | MS.gene36243:intron | 50.0% | |
! | AAACCACCAAGTATCGCCAC+GGG | + | chr2.1:2527300-2527319 | None:intergenic | 50.0% |
! | ACAGTGAAGGTTGGCATTGG+AGG | - | chr2.1:2527708-2527727 | MS.gene36243:intron | 50.0% |
! | CAGTGAAGGTTGGCATTGGA+GGG | - | chr2.1:2527709-2527728 | MS.gene36243:intron | 50.0% |
! | GCCATGGGAAGGTATGGAAA+TGG | - | chr2.1:2527777-2527796 | MS.gene36243:intron | 50.0% |
CAACAGAGCCAGCAGATGGT+TGG | - | chr2.1:2527511-2527530 | MS.gene36243:intron | 55.0% | |
GTGGGGGAGCTTTCAGAAGA+TGG | - | chr2.1:2527432-2527451 | MS.gene36243:intron | 55.0% | |
! | GGCATTGGAGGGTTCAGCAT+GGG | - | chr2.1:2527720-2527739 | MS.gene36243:intron | 55.0% |
! | TGGCATTGGAGGGTTCAGCA+TGG | - | chr2.1:2527719-2527738 | MS.gene36243:intron | 55.0% |
!! | GCGCATTCTCATATCGGCTC+TGG | - | chr2.1:2525830-2525849 | MS.gene36243:CDS | 55.0% |
!! | GTGGTTGGCTTCCAGGATCA+AGG | - | chr2.1:2527841-2527860 | MS.gene36243:intron | 55.0% |
! | ACCAAGTATCGCCACGGGAC+GGG | + | chr2.1:2527295-2527314 | None:intergenic | 60.0% |
! | CACCAAGTATCGCCACGGGA+CGG | + | chr2.1:2527296-2527315 | None:intergenic | 60.0% |
!! | GGACTCAGTGGTTGGCTTCC+AGG | - | chr2.1:2527834-2527853 | MS.gene36243:intron | 60.0% |
ACCCGTCCCGTGGCGATACT+TGG | - | chr2.1:2527291-2527310 | MS.gene36243:intron | 65.0% | |
ACGGGACGGGTAGGAGCAGT+AGG | + | chr2.1:2527282-2527301 | None:intergenic | 65.0% | |
AGTATCGCCACGGGACGGGT+AGG | + | chr2.1:2527291-2527310 | None:intergenic | 65.0% | |
CGGGACGGGTAGGAGCAGTA+GGG | + | chr2.1:2527281-2527300 | None:intergenic | 65.0% | |
CGTCCCGTGGCGATACTTGG+TGG | - | chr2.1:2527294-2527313 | MS.gene36243:intron | 65.0% | |
TACTGCTCCTACCCGTCCCG+TGG | - | chr2.1:2527281-2527300 | MS.gene36243:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.1 | gene | 2525821 | 2528693 | 2525821 | ID=MS.gene36243 |
chr2.1 | mRNA | 2525821 | 2528693 | 2525821 | ID=MS.gene36243.t1;Parent=MS.gene36243 |
chr2.1 | exon | 2528663 | 2528693 | 2528663 | ID=MS.gene36243.t1.exon1;Parent=MS.gene36243.t1 |
chr2.1 | CDS | 2528663 | 2528693 | 2528663 | ID=cds.MS.gene36243.t1;Parent=MS.gene36243.t1 |
chr2.1 | exon | 2528091 | 2528205 | 2528091 | ID=MS.gene36243.t1.exon2;Parent=MS.gene36243.t1 |
chr2.1 | CDS | 2528091 | 2528205 | 2528091 | ID=cds.MS.gene36243.t1;Parent=MS.gene36243.t1 |
chr2.1 | exon | 2527400 | 2527436 | 2527400 | ID=MS.gene36243.t1.exon3;Parent=MS.gene36243.t1 |
chr2.1 | CDS | 2527400 | 2527436 | 2527400 | ID=cds.MS.gene36243.t1;Parent=MS.gene36243.t1 |
chr2.1 | exon | 2527181 | 2527250 | 2527181 | ID=MS.gene36243.t1.exon4;Parent=MS.gene36243.t1 |
chr2.1 | CDS | 2527181 | 2527250 | 2527181 | ID=cds.MS.gene36243.t1;Parent=MS.gene36243.t1 |
chr2.1 | exon | 2526986 | 2527090 | 2526986 | ID=MS.gene36243.t1.exon5;Parent=MS.gene36243.t1 |
chr2.1 | CDS | 2526986 | 2527090 | 2526986 | ID=cds.MS.gene36243.t1;Parent=MS.gene36243.t1 |
chr2.1 | exon | 2526652 | 2526802 | 2526652 | ID=MS.gene36243.t1.exon6;Parent=MS.gene36243.t1 |
chr2.1 | CDS | 2526652 | 2526802 | 2526652 | ID=cds.MS.gene36243.t1;Parent=MS.gene36243.t1 |
chr2.1 | exon | 2526437 | 2526519 | 2526437 | ID=MS.gene36243.t1.exon7;Parent=MS.gene36243.t1 |
chr2.1 | CDS | 2526437 | 2526519 | 2526437 | ID=cds.MS.gene36243.t1;Parent=MS.gene36243.t1 |
chr2.1 | exon | 2525994 | 2526087 | 2525994 | ID=MS.gene36243.t1.exon8;Parent=MS.gene36243.t1 |
chr2.1 | CDS | 2525994 | 2526087 | 2525994 | ID=cds.MS.gene36243.t1;Parent=MS.gene36243.t1 |
chr2.1 | exon | 2525821 | 2525908 | 2525821 | ID=MS.gene36243.t1.exon9;Parent=MS.gene36243.t1 |
chr2.1 | CDS | 2525821 | 2525908 | 2525821 | ID=cds.MS.gene36243.t1;Parent=MS.gene36243.t1 |
Gene Sequence |
Protein sequence |