AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene36243

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene36243.t1 MTR_2g103140 99.222 257 2 0 1 257 1 257 0.0 522
MS.gene36243.t1 MTR_4g011320 84.496 258 39 1 1 257 1 258 1.70e-158 441
MS.gene36243.t1 MTR_2g054780 68.110 254 79 1 1 254 1 252 9.04e-131 370
MS.gene36243.t1 MTR_3g107630 70.293 239 71 0 17 255 17 255 3.00e-123 351
MS.gene36243.t1 MTR_2g054780 65.748 254 78 2 1 254 1 245 5.67e-123 350
MS.gene36243.t1 MTR_4g132890 30.045 223 129 7 37 250 7 211 4.21e-21 88.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene36243.t1 AT1G52700 76.772 254 58 1 1 254 1 253 2.54e-141 397
MS.gene36243.t1 AT1G52700 76.772 254 58 1 1 254 1 253 2.54e-141 397
MS.gene36243.t1 AT3G15650 72.527 273 55 2 1 254 1 272 4.75e-138 389
MS.gene36243.t1 AT1G52700 77.869 244 53 1 11 254 2 244 6.68e-137 385
MS.gene36243.t1 AT3G15650 77.953 254 55 1 1 254 1 253 1.90e-133 377
MS.gene36243.t1 AT3G15650 78.947 247 51 1 8 254 18 263 2.30e-130 369
MS.gene36243.t1 AT5G20060 66.929 254 82 2 1 254 1 252 7.29e-130 368
MS.gene36243.t1 AT5G20060 66.929 254 82 2 1 254 1 252 7.29e-130 368
MS.gene36243.t1 AT5G20060 66.929 254 82 2 1 254 1 252 7.29e-130 368
MS.gene36243.t1 AT5G20060 66.929 254 82 2 1 254 1 252 7.29e-130 368
MS.gene36243.t1 AT1G52700 77.612 201 45 0 54 254 1 201 3.07e-111 319
MS.gene36243.t1 AT1G52700 78.061 196 42 1 1 196 1 195 7.66e-109 313
MS.gene36243.t1 AT1G52700 78.061 196 42 1 1 196 1 195 7.66e-109 313
MS.gene36243.t1 AT1G51300 45.228 241 124 2 16 254 30 264 6.91e-69 214
MS.gene36243.t1 AT1G51300 46.009 213 107 2 16 226 30 236 6.72e-62 196
MS.gene36243.t1 AT1G52695 43.830 235 117 5 19 252 11 231 2.45e-56 180
MS.gene36243.t1 AT1G51300 46.429 168 82 2 16 181 19 180 5.65e-46 152
MS.gene36243.t1 AT1G52470 37.946 224 121 5 9 232 3 208 2.70e-38 134
MS.gene36243.t1 AT1G52460 39.574 235 109 7 26 253 13 221 1.43e-37 132
MS.gene36243.t1 AT1G47786 46.296 162 74 4 14 170 33 186 3.62e-37 129
MS.gene36243.t1 AT1G52470 37.436 195 104 4 9 203 3 179 1.57e-32 117
MS.gene36243.t1 AT1G52470 38.298 188 98 4 9 196 3 172 1.72e-32 117
MS.gene36243.t1 AT1G52440 35.622 233 92 6 26 253 17 196 1.21e-30 113
MS.gene36243.t1 AT1G47780 52.727 110 49 1 61 170 23 129 3.00e-26 99.8
MS.gene36243.t1 AT4G22300 31.839 223 125 7 37 250 51 255 7.17e-24 97.1
MS.gene36243.t1 AT4G22305 31.390 223 126 7 37 250 6 210 1.64e-21 90.1

Find 80 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTCTTAAATTTACAGGATA+TGG 0.124916 2.1:+2526688 None:intergenic
GGACTCAGTGGTTGGCTTCC+AGG 0.228261 2.1:-2526658 MS.gene36243:CDS
ACAACTGCTCTTAAATTTAC+AGG 0.241676 2.1:+2526682 None:intergenic
ATGATATGATACAGATAAAA+TGG 0.253421 2.1:-2527242 MS.gene36243:intron
ATTCCGTGACACTGTAAAAT+TGG 0.284885 2.1:+2526439 None:intergenic
CTGCAGCTCATCTCAGTTGT+TGG 0.306667 2.1:-2527420 MS.gene36243:intron
GATTTCATCTTACCCTTCAT+AGG 0.341429 2.1:+2525981 None:intergenic
CAGAAGATGGTCCAGATGAT+TGG 0.348652 2.1:-2527047 MS.gene36243:CDS
AACATCAAGCTACTATAGTT+TGG 0.349013 2.1:-2528120 MS.gene36243:CDS
ACTCGACGAACTTTCGAATT+CGG 0.359043 2.1:-2528172 MS.gene36243:CDS
CTCGACGAACTTTCGAATTC+GGG 0.362164 2.1:-2528171 MS.gene36243:CDS
TCCAGATGATTGGGAGGGTT+TGG 0.362266 2.1:-2527037 MS.gene36243:CDS
ACCCGTCCCGTGGCGATACT+TGG 0.362645 2.1:-2527201 MS.gene36243:CDS
ACCTGGCTTAGTTCAAGGTT+GGG 0.374896 2.1:-2525843 MS.gene36243:CDS
TCGAAACCCTGCTGAACTTA+AGG 0.379498 2.1:+2526020 None:intergenic
AGATTTCTCTCCATACTTGC+AGG 0.384767 2.1:+2526050 None:intergenic
CTGCTATCGTGTAGGAGCTT+AGG 0.385731 2.1:-2526511 MS.gene36243:intron
TTGCATGGACTTGGTGATAA+TGG 0.386499 2.1:-2528097 MS.gene36243:CDS
CTCTTAAATTTACAGGATAT+GGG 0.394710 2.1:+2526689 None:intergenic
TGCTATCGTGTAGGAGCTTA+GGG 0.407200 2.1:-2526510 MS.gene36243:intron
TTTCCACCTGGCTTAGTTCA+AGG 0.409660 2.1:-2525848 MS.gene36243:CDS
CACCTGGCTTAGTTCAAGGT+TGG 0.410510 2.1:-2525844 MS.gene36243:CDS
GGCATTGGAGGGTTCAGCAT+GGG 0.423064 2.1:-2526772 MS.gene36243:CDS
TCCAAACCCTCCCAATCATC+TGG 0.433424 2.1:+2527036 None:intergenic
AGAAGATGGTCCAGATGATT+GGG 0.441840 2.1:-2527046 MS.gene36243:CDS
GCTCAATCCTTAAGTTCAGC+AGG 0.445139 2.1:-2526027 MS.gene36243:CDS
GTAAATTTAAGAGCAGTTGT+TGG 0.448866 2.1:-2526679 MS.gene36243:CDS
GATGTAGTACCCTGCAAGTA+TGG 0.451238 2.1:-2526060 MS.gene36243:CDS
GAAACTTCACCCATCTCTCT+TGG 0.455198 2.1:+2525867 None:intergenic
TGCTATGCCATGGGAAGGTA+TGG 0.455698 2.1:-2526721 MS.gene36243:CDS
AGTTCAAGGTTGGGACTTGA+AGG 0.458085 2.1:-2525834 MS.gene36243:CDS
AGTCACGCGCATTCTCATAT+CGG 0.472684 2.1:-2528668 MS.gene36243:CDS
ACGGGACGGGTAGGAGCAGT+AGG 0.474505 2.1:+2527213 None:intergenic
GTTGCATTCAAATCCTATGA+AGG 0.479609 2.1:-2525994 MS.gene36243:CDS
ATAGTTTGGTTGCATGGACT+TGG 0.482576 2.1:-2528106 MS.gene36243:CDS
AATATAGGATACCTTGATCC+TGG 0.497671 2.1:+2526640 None:intergenic
GCCATGGGAAGGTATGGAAA+TGG 0.499012 2.1:-2526715 MS.gene36243:CDS
TGGCATTGGAGGGTTCAGCA+TGG 0.500431 2.1:-2526773 MS.gene36243:CDS
GCTACTATAGTTTGGTTGCA+TGG 0.500682 2.1:-2528112 MS.gene36243:CDS
GCGCATTCTCATATCGGCTC+TGG 0.502067 2.1:-2528662 MS.gene36243:intron
AATATTCTTACATTTGGAAG+TGG 0.504794 2.1:+2527389 None:intergenic
ACCAAGTATCGCCACGGGAC+GGG 0.505652 2.1:+2527200 None:intergenic
ACAGTGAAGGTTGGCATTGG+AGG 0.514761 2.1:-2526784 MS.gene36243:intron
GTGGTTGGCTTCCAGGATCA+AGG 0.515697 2.1:-2526651 MS.gene36243:intron
CAGTTGTTGGACTCAGTGGT+TGG 0.515891 2.1:-2526666 MS.gene36243:CDS
GAAAAGTACCAACCATCTGC+TGG 0.518011 2.1:+2526973 None:intergenic
CTCTGCAACATGCTATGCCA+TGG 0.520478 2.1:-2526731 MS.gene36243:CDS
ACACATGTAGTGAGGCCTAA+AGG 0.529217 2.1:-2528145 MS.gene36243:CDS
TCCCAACCTTGAACTAAGCC+AGG 0.530276 2.1:+2525842 None:intergenic
CGTCCCGTGGCGATACTTGG+TGG 0.534524 2.1:-2527198 MS.gene36243:CDS
ATCTGCAGGGTTTGATGTGG+GGG 0.542921 2.1:-2527076 MS.gene36243:intron
TAATCTGCAGGGTTTGATGT+GGG 0.550311 2.1:-2527078 MS.gene36243:intron
CAGTGAAGGTTGGCATTGGA+GGG 0.550934 2.1:-2526783 MS.gene36243:CDS
CTCAATCCTTAAGTTCAGCA+GGG 0.560404 2.1:-2526026 MS.gene36243:CDS
TACACAGTTCCAAGAGAGAT+GGG 0.566504 2.1:-2525876 MS.gene36243:CDS
GCCATTTCCATACCTTCCCA+TGG 0.566957 2.1:+2526714 None:intergenic
CACCAAGTATCGCCACGGGA+CGG 0.567381 2.1:+2527199 None:intergenic
TTGCATTCAAATCCTATGAA+GGG 0.567894 2.1:-2525993 MS.gene36243:intron
GTGACAGTGAAGGTTGGCAT+TGG 0.569578 2.1:-2526787 MS.gene36243:intron
AGAGCAGTTGTTGGACTCAG+TGG 0.571266 2.1:-2526670 MS.gene36243:CDS
TTGTCAACAGAGCCAGCAGA+TGG 0.578833 2.1:-2526985 MS.gene36243:intron
GACTTGGTGATAATGGTTTG+AGG 0.581699 2.1:-2528090 MS.gene36243:intron
ATAATCTGCAGGGTTTGATG+TGG 0.583692 2.1:-2527079 MS.gene36243:intron
TTACACAGTTCCAAGAGAGA+TGG 0.585012 2.1:-2525877 MS.gene36243:CDS
AATCTGCAGGGTTTGATGTG+GGG 0.587059 2.1:-2527077 MS.gene36243:intron
CGGGACGGGTAGGAGCAGTA+GGG 0.588956 2.1:+2527214 None:intergenic
GATTTCTCTCCATACTTGCA+GGG 0.589604 2.1:+2526051 None:intergenic
TACTGCTCCTACCCGTCCCG+TGG 0.594923 2.1:-2527211 MS.gene36243:CDS
AAGTGTCACATGAAGCGAGA+AGG 0.615847 2.1:-2526477 MS.gene36243:CDS
TCTGCAACATGCTATGCCAT+GGG 0.616412 2.1:-2526730 MS.gene36243:CDS
AGTATCGCCACGGGACGGGT+AGG 0.617013 2.1:+2527204 None:intergenic
CAACATGCTATGCCATGGGA+AGG 0.620791 2.1:-2526726 MS.gene36243:CDS
AGATGGTCCAGATGATTGGG+AGG 0.628482 2.1:-2527043 MS.gene36243:CDS
TATTATGTGACAGTGAAGGT+TGG 0.630244 2.1:-2526793 MS.gene36243:intron
AGATGGGTGAAGTTTCCACC+TGG 0.640732 2.1:-2525860 MS.gene36243:CDS
AAAACCACCAAGTATCGCCA+CGG 0.640799 2.1:+2527194 None:intergenic
GATGGTCCAGATGATTGGGA+GGG 0.647020 2.1:-2527042 MS.gene36243:CDS
AAACCACCAAGTATCGCCAC+GGG 0.651184 2.1:+2527195 None:intergenic
TCGGGAAGACACATGTAGTG+AGG 0.680314 2.1:-2528153 MS.gene36243:CDS
CAACCTTGAACTAAGCCAGG+TGG 0.690014 2.1:+2525845 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATAAATATTCTTACATT+TGG + chr2.1:2527112-2527131 None:intergenic 10.0%
!!! TCAAAATATTATTTTAGTTA+TGG + chr2.1:2527191-2527210 None:intergenic 10.0%
!! AAAGAATATGAACTATATTA+GGG - chr2.1:2526681-2526700 MS.gene36243:CDS 15.0%
!! AAATAGTAGTGTTATAATAT+AGG + chr2.1:2527870-2527889 None:intergenic 15.0%
!! CAAAAAATTTATAGCATATT+TGG - chr2.1:2528329-2528348 MS.gene36243:intron 15.0%
!! GATAAGAGAAAATAATAAAA+TGG + chr2.1:2525871-2525890 None:intergenic 15.0%
!! TATATAATATGAATAGAAAC+TGG - chr2.1:2526863-2526882 MS.gene36243:intron 15.0%
!!! ATAACACATTAACATTTTTT+TGG - chr2.1:2527637-2527656 MS.gene36243:intron 15.0%
!! AAAGTTGTGATTATAATTGT+TGG - chr2.1:2526780-2526799 MS.gene36243:CDS 20.0%
!! AAGAATATGAACTATATTAG+GGG - chr2.1:2526682-2526701 MS.gene36243:CDS 20.0%
!! AATTTATAGCATATTTGGAA+TGG - chr2.1:2528334-2528353 MS.gene36243:intron 20.0%
!! ACAAAGAAAAACAGAAATAT+TGG + chr2.1:2526593-2526612 None:intergenic 20.0%
!! ATAGTAATAATAGTAGCAAA+AGG + chr2.1:2528362-2528381 None:intergenic 20.0%
!! ATGAAAGATAAAACCATTAT+GGG - chr2.1:2526658-2526677 MS.gene36243:CDS 20.0%
!! ATGATATGATACAGATAAAA+TGG - chr2.1:2527250-2527269 MS.gene36243:intron 20.0%
!! GAAAGAATATGAACTATATT+AGG - chr2.1:2526680-2526699 MS.gene36243:CDS 20.0%
!! TACTTAAAACATTCAACATA+AGG + chr2.1:2526712-2526731 None:intergenic 20.0%
!! TATGAAAGATAAAACCATTA+TGG - chr2.1:2526657-2526676 MS.gene36243:CDS 20.0%
!! TCTTATATACTGATATAACT+AGG - chr2.1:2528093-2528112 MS.gene36243:CDS 20.0%
!! TTAATTGATGTCAGATTTAA+TGG - chr2.1:2527010-2527029 MS.gene36243:CDS 20.0%
!!! ATGGTTTTATCTTTCATATA+CGG + chr2.1:2526655-2526674 None:intergenic 20.0%
!!! ATGTTAGACAATTTTTATCT+GGG - chr2.1:2526976-2526995 MS.gene36243:intron 20.0%
!!! ATTTTTTTGGACCTTAATTA+AGG - chr2.1:2527650-2527669 MS.gene36243:intron 20.0%
!!! TATGTTAGACAATTTTTATC+TGG - chr2.1:2526975-2526994 MS.gene36243:intron 20.0%
!!! TCAATTACATGATCTTTTTT+TGG - chr2.1:2526078-2526097 MS.gene36243:intron 20.0%
! AAAAGATCATGTAATTGACT+TGG + chr2.1:2526076-2526095 None:intergenic 25.0%
! AATATTCTTACATTTGGAAG+TGG + chr2.1:2527106-2527125 None:intergenic 25.0%
! ATTATCTTAAATGCTTCTCT+AGG - chr2.1:2527151-2527170 MS.gene36243:intron 25.0%
! ATTGATTACAATCCTTCAAA+CGG + chr2.1:2526200-2526219 None:intergenic 25.0%
! CTAAACAAGTCTAATTAACT+TGG - chr2.1:2527380-2527399 MS.gene36243:intron 25.0%
! CTCTTAAATTTACAGGATAT+GGG + chr2.1:2527806-2527825 None:intergenic 25.0%
! TCAGTTTCACAATAATCATT+TGG - chr2.1:2527943-2527962 MS.gene36243:intron 25.0%
!! AAACATGCTTATCTGATTTT+TGG - chr2.1:2527037-2527056 MS.gene36243:CDS 25.0%
!! TCTTTCTTGTTTACAATTAC+AGG - chr2.1:2526287-2526306 MS.gene36243:intron 25.0%
!! TCTTTTGTCAATACTCATAT+AGG + chr2.1:2526842-2526861 None:intergenic 25.0%
!!! ATTCTTTGTTGTTTTTAGTG+TGG - chr2.1:2526900-2526919 MS.gene36243:intron 25.0%
!!! TTAAGTATTGAAGTTCTTTC+TGG - chr2.1:2526725-2526744 MS.gene36243:CDS 25.0%
AAAGAGAAAAGGAAAAAGAG+AGG + chr2.1:2526557-2526576 None:intergenic 30.0%
AAATCAGATAAGCATGTTTC+TGG + chr2.1:2527036-2527055 None:intergenic 30.0%
AACATCAAGCTACTATAGTT+TGG - chr2.1:2526372-2526391 MS.gene36243:intron 30.0%
AAGTACAAAACAGAACAAGT+AGG + chr2.1:2526517-2526536 None:intergenic 30.0%
ACAACTGCTCTTAAATTTAC+AGG + chr2.1:2527813-2527832 None:intergenic 30.0%
ACATATAGCAGTGTTAGAAA+GGG + chr2.1:2526440-2526459 None:intergenic 30.0%
ACCGTACAATCTCATATTAA+CGG - chr2.1:2528199-2528218 MS.gene36243:intron 30.0%
ACCGTTAATATGAGATTGTA+CGG + chr2.1:2528203-2528222 None:intergenic 30.0%
AGAGAAGAGTAAAAGAGAAA+AGG + chr2.1:2526568-2526587 None:intergenic 30.0%
AGTTTGAGCATTTCAATGTA+TGG - chr2.1:2526941-2526960 MS.gene36243:intron 30.0%
ATAAAAATTACATGCAGTGC+AGG + chr2.1:2527325-2527344 None:intergenic 30.0%
GATTATAATTGTTGGAAGCT+TGG - chr2.1:2526788-2526807 MS.gene36243:intron 30.0%
GCTCTTAAATTTACAGGATA+TGG + chr2.1:2527807-2527826 None:intergenic 30.0%
GTAAATTTAAGAGCAGTTGT+TGG - chr2.1:2527813-2527832 MS.gene36243:intron 30.0%
GTTCATATTCTTTCCCATAA+TGG + chr2.1:2526674-2526693 None:intergenic 30.0%
TAAAAATTACATGCAGTGCA+GGG + chr2.1:2527324-2527343 None:intergenic 30.0%
TAATCATTTGGCTAATGTGT+TGG - chr2.1:2527955-2527974 MS.gene36243:intron 30.0%
TCATCATAAGACATAACCAT+TGG - chr2.1:2526480-2526499 MS.gene36243:CDS 30.0%
TGATTATTATGTGACAGTGA+AGG - chr2.1:2527695-2527714 MS.gene36243:intron 30.0%
TGATTGAACAATAATCTGCA+GGG - chr2.1:2527403-2527422 MS.gene36243:CDS 30.0%
TTGCATTCAAATCCTATGAA+GGG - chr2.1:2528499-2528518 MS.gene36243:intron 30.0%
! AACTTCAATGCAAATTTGCT+AGG - chr2.1:2526173-2526192 MS.gene36243:intron 30.0%
! TGTGATTTTTGCATAAGCTA+CGG + chr2.1:2526006-2526025 None:intergenic 30.0%
! TTACCAATTTTACAGTGTCA+CGG - chr2.1:2528050-2528069 MS.gene36243:intron 30.0%
! TTTTGGACCTTAATTAAGGT+TGG - chr2.1:2527654-2527673 MS.gene36243:intron 30.0%
!! ATAAAAGGGTGCTTAGATAT+AGG - chr2.1:2527601-2527620 MS.gene36243:intron 30.0%
!! GATCAAAGCATTCATTTTGT+AGG - chr2.1:2528405-2528424 MS.gene36243:intron 30.0%
!! TAAAAGGGTGCTTAGATATA+GGG - chr2.1:2527602-2527621 MS.gene36243:intron 30.0%
!! TAATTGACTTGGTGCATATT+TGG + chr2.1:2526065-2526084 None:intergenic 30.0%
AAAACAGAACAAGTAGGAGA+AGG + chr2.1:2526511-2526530 None:intergenic 35.0%
AAAAGGAAAAAGAGAGGTTG+TGG + chr2.1:2526551-2526570 None:intergenic 35.0%
AATATAGGATACCTTGATCC+TGG + chr2.1:2527855-2527874 None:intergenic 35.0%
ACCGTTTGCCTCTAATAAAA+GGG - chr2.1:2527587-2527606 MS.gene36243:intron 35.0%
ATTCATGCAAGTTGCAAAGA+AGG + chr2.1:2525893-2525912 None:intergenic 35.0%
ATTCCGTGACACTGTAAAAT+TGG + chr2.1:2528056-2528075 None:intergenic 35.0%
CAAGCTACCAACCTTAATTA+AGG + chr2.1:2527664-2527683 None:intergenic 35.0%
CTGATAGATGTCAAAACATG+AGG + chr2.1:2526230-2526249 None:intergenic 35.0%
GAACAGTTATCTCAGTTTGT+TGG - chr2.1:2528567-2528586 MS.gene36243:intron 35.0%
GACATATAGCAGTGTTAGAA+AGG + chr2.1:2526441-2526460 None:intergenic 35.0%
GATTGCTATAAGTGCATGTT+TGG - chr2.1:2525924-2525943 MS.gene36243:intron 35.0%
GATTTCATCTTACCCTTCAT+AGG + chr2.1:2528514-2528533 None:intergenic 35.0%
GTGATTGAACAATAATCTGC+AGG - chr2.1:2527402-2527421 MS.gene36243:CDS 35.0%
GTTGCATTCAAATCCTATGA+AGG - chr2.1:2528498-2528517 MS.gene36243:intron 35.0%
TATTATGTGACAGTGAAGGT+TGG - chr2.1:2527699-2527718 MS.gene36243:intron 35.0%
TCAGCAGAATATATTCCATG+TGG + chr2.1:2526758-2526777 None:intergenic 35.0%
! ACCCTTTTATTAGAGGCAAA+CGG + chr2.1:2527591-2527610 None:intergenic 35.0%
! GTAGCTTGATGTTTTCCTTT+AGG + chr2.1:2526365-2526384 None:intergenic 35.0%
! TCTAAGCACCCTTTTATTAG+AGG + chr2.1:2527598-2527617 None:intergenic 35.0%
! TTTTACCACTGCATGAAATC+TGG - chr2.1:2528253-2528272 MS.gene36243:intron 35.0%
AAGAGAGGTTGTGGAAAGAA+AGG + chr2.1:2526542-2526561 None:intergenic 40.0%
ACTCGACGAACTTTCGAATT+CGG - chr2.1:2526320-2526339 MS.gene36243:intron 40.0%
AGAAGATGGTCCAGATGATT+GGG - chr2.1:2527446-2527465 MS.gene36243:intron 40.0%
AGAATCCAGATTTCATGCAG+TGG + chr2.1:2528261-2528280 None:intergenic 40.0%
AGATTTCTCTCCATACTTGC+AGG + chr2.1:2528445-2528464 None:intergenic 40.0%
ATAATCTGCAGGGTTTGATG+TGG - chr2.1:2527413-2527432 MS.gene36243:CDS 40.0%
ATAGTTTGGTTGCATGGACT+TGG - chr2.1:2526386-2526405 MS.gene36243:intron 40.0%
CACCGTTTGCCTCTAATAAA+AGG - chr2.1:2527586-2527605 MS.gene36243:intron 40.0%
CTCAATCCTTAAGTTCAGCA+GGG - chr2.1:2528466-2528485 MS.gene36243:intron 40.0%
GATTTCTCTCCATACTTGCA+GGG + chr2.1:2528444-2528463 None:intergenic 40.0%
GCAAACGGTGCTTACATATA+GGG + chr2.1:2527576-2527595 None:intergenic 40.0%
GCTACTATAGTTTGGTTGCA+TGG - chr2.1:2526380-2526399 MS.gene36243:intron 40.0%
GTAGGAGAAGGAATAACCAA+TGG + chr2.1:2526499-2526518 None:intergenic 40.0%
TAATCTGCAGGGTTTGATGT+GGG - chr2.1:2527414-2527433 MS.gene36243:CDS 40.0%
TACACAGTTCCAAGAGAGAT+GGG - chr2.1:2528616-2528635 MS.gene36243:intron 40.0%
TGCTTAGATATAGGGACAGA+GGG - chr2.1:2527610-2527629 MS.gene36243:intron 40.0%
TTACACAGTTCCAAGAGAGA+TGG - chr2.1:2528615-2528634 MS.gene36243:intron 40.0%
!! AATTTGCTAGGTCCGTTTGA+AGG - chr2.1:2526185-2526204 MS.gene36243:intron 40.0%
!! CAGATGGTTGGTACTTTTCA+AGG - chr2.1:2527523-2527542 MS.gene36243:intron 40.0%
!! CTTTCTGGTTAGATTCCACA+TGG - chr2.1:2526740-2526759 MS.gene36243:CDS 40.0%
!! GACTTGGTGATAATGGTTTG+AGG - chr2.1:2526402-2526421 MS.gene36243:intron 40.0%
!! TTGCATGGACTTGGTGATAA+TGG - chr2.1:2526395-2526414 MS.gene36243:intron 40.0%
AAGTGTCACATGAAGCGAGA+AGG - chr2.1:2528015-2528034 MS.gene36243:intron 45.0%
AATCTGCAGGGTTTGATGTG+GGG - chr2.1:2527415-2527434 MS.gene36243:CDS 45.0%
ACACATGTAGTGAGGCCTAA+AGG - chr2.1:2526347-2526366 MS.gene36243:intron 45.0%
ACCTGGCTTAGTTCAAGGTT+GGG - chr2.1:2528649-2528668 MS.gene36243:intron 45.0%
ACGGTGCTTACATATAGGGA+CGG + chr2.1:2527572-2527591 None:intergenic 45.0%
AGTCACGCGCATTCTCATAT+CGG - chr2.1:2525824-2525843 MS.gene36243:CDS 45.0%
AGTTCAAGGTTGGGACTTGA+AGG - chr2.1:2528658-2528677 MS.gene36243:intron 45.0%
CAGAAGATGGTCCAGATGAT+TGG - chr2.1:2527445-2527464 MS.gene36243:intron 45.0%
CTCGACGAACTTTCGAATTC+GGG - chr2.1:2526321-2526340 MS.gene36243:intron 45.0%
GAAACTTCACCCATCTCTCT+TGG + chr2.1:2528628-2528647 None:intergenic 45.0%
GATGTAGTACCCTGCAAGTA+TGG - chr2.1:2528432-2528451 MS.gene36243:intron 45.0%
GCTCAATCCTTAAGTTCAGC+AGG - chr2.1:2528465-2528484 MS.gene36243:intron 45.0%
GGCAAACGGTGCTTACATAT+AGG + chr2.1:2527577-2527596 None:intergenic 45.0%
GTGCTTAGATATAGGGACAG+AGG - chr2.1:2527609-2527628 MS.gene36243:intron 45.0%
GTTGGAATCTGCTATCGTGT+AGG - chr2.1:2527973-2527992 MS.gene36243:intron 45.0%
TCAGCAATGCAACATGCTAG+AGG + chr2.1:2526154-2526173 None:intergenic 45.0%
TCGAAACCCTGCTGAACTTA+AGG + chr2.1:2528475-2528494 None:intergenic 45.0%
TCTGCAACATGCTATGCCAT+GGG - chr2.1:2527762-2527781 MS.gene36243:intron 45.0%
TGCTATCGTGTAGGAGCTTA+GGG - chr2.1:2527982-2528001 MS.gene36243:intron 45.0%
TGCTTACATATAGGGACGGA+GGG + chr2.1:2527568-2527587 None:intergenic 45.0%
TTTCCACCTGGCTTAGTTCA+AGG - chr2.1:2528644-2528663 MS.gene36243:intron 45.0%
! AAAACCACCAAGTATCGCCA+CGG + chr2.1:2527301-2527320 None:intergenic 45.0%
! GTGCATGTTTGGAGTCACAA+CGG - chr2.1:2525935-2525954 MS.gene36243:intron 45.0%
!! GAAAAGTACCAACCATCTGC+TGG + chr2.1:2527522-2527541 None:intergenic 45.0%
!! TGTTGGTTTCTGATGCATGC+AGG - chr2.1:2528584-2528603 MS.gene36243:intron 45.0%
!! TAAATAAATTAACAAAAATT+AGG + chr2.1:2527355-2527374 None:intergenic 5.0%
!!! AATTTTTGTTAATTTATTTA+GGG - chr2.1:2527355-2527374 MS.gene36243:intron 5.0%
!!! TAATTTTTGTTAATTTATTT+AGG - chr2.1:2527354-2527373 MS.gene36243:intron 5.0%
AGAGCAGTTGTTGGACTCAG+TGG - chr2.1:2527822-2527841 MS.gene36243:intron 50.0%
AGATGGGTGAAGTTTCCACC+TGG - chr2.1:2528632-2528651 MS.gene36243:intron 50.0%
AGATGGTCCAGATGATTGGG+AGG - chr2.1:2527449-2527468 MS.gene36243:intron 50.0%
ATCTGCAGGGTTTGATGTGG+GGG - chr2.1:2527416-2527435 MS.gene36243:CDS 50.0%
CAACATGCTATGCCATGGGA+AGG - chr2.1:2527766-2527785 MS.gene36243:intron 50.0%
CAACCTTGAACTAAGCCAGG+TGG + chr2.1:2528650-2528669 None:intergenic 50.0%
CACCTGGCTTAGTTCAAGGT+TGG - chr2.1:2528648-2528667 MS.gene36243:intron 50.0%
CAGTTGTTGGACTCAGTGGT+TGG - chr2.1:2527826-2527845 MS.gene36243:intron 50.0%
CTCTGCAACATGCTATGCCA+TGG - chr2.1:2527761-2527780 MS.gene36243:intron 50.0%
CTGCAGCTCATCTCAGTTGT+TGG - chr2.1:2527072-2527091 MS.gene36243:intron 50.0%
CTGCTATCGTGTAGGAGCTT+AGG - chr2.1:2527981-2528000 MS.gene36243:intron 50.0%
GATGGTCCAGATGATTGGGA+GGG - chr2.1:2527450-2527469 MS.gene36243:intron 50.0%
GCCATTTCCATACCTTCCCA+TGG + chr2.1:2527781-2527800 None:intergenic 50.0%
GTGACAGTGAAGGTTGGCAT+TGG - chr2.1:2527705-2527724 MS.gene36243:intron 50.0%
GTGCTTACATATAGGGACGG+AGG + chr2.1:2527569-2527588 None:intergenic 50.0%
GTTTCTGATGCATGCAGGCT+TGG - chr2.1:2528589-2528608 MS.gene36243:intron 50.0%
TCCAAACCCTCCCAATCATC+TGG + chr2.1:2527459-2527478 None:intergenic 50.0%
TCCAGATGATTGGGAGGGTT+TGG - chr2.1:2527455-2527474 MS.gene36243:intron 50.0%
TCCCAACCTTGAACTAAGCC+AGG + chr2.1:2528653-2528672 None:intergenic 50.0%
TCGGGAAGACACATGTAGTG+AGG - chr2.1:2526339-2526358 MS.gene36243:intron 50.0%
TGCTATGCCATGGGAAGGTA+TGG - chr2.1:2527771-2527790 MS.gene36243:intron 50.0%
TTGTCAACAGAGCCAGCAGA+TGG - chr2.1:2527507-2527526 MS.gene36243:intron 50.0%
! AAACCACCAAGTATCGCCAC+GGG + chr2.1:2527300-2527319 None:intergenic 50.0%
! ACAGTGAAGGTTGGCATTGG+AGG - chr2.1:2527708-2527727 MS.gene36243:intron 50.0%
! CAGTGAAGGTTGGCATTGGA+GGG - chr2.1:2527709-2527728 MS.gene36243:intron 50.0%
! GCCATGGGAAGGTATGGAAA+TGG - chr2.1:2527777-2527796 MS.gene36243:intron 50.0%
CAACAGAGCCAGCAGATGGT+TGG - chr2.1:2527511-2527530 MS.gene36243:intron 55.0%
GTGGGGGAGCTTTCAGAAGA+TGG - chr2.1:2527432-2527451 MS.gene36243:intron 55.0%
! GGCATTGGAGGGTTCAGCAT+GGG - chr2.1:2527720-2527739 MS.gene36243:intron 55.0%
! TGGCATTGGAGGGTTCAGCA+TGG - chr2.1:2527719-2527738 MS.gene36243:intron 55.0%
!! GCGCATTCTCATATCGGCTC+TGG - chr2.1:2525830-2525849 MS.gene36243:CDS 55.0%
!! GTGGTTGGCTTCCAGGATCA+AGG - chr2.1:2527841-2527860 MS.gene36243:intron 55.0%
! ACCAAGTATCGCCACGGGAC+GGG + chr2.1:2527295-2527314 None:intergenic 60.0%
! CACCAAGTATCGCCACGGGA+CGG + chr2.1:2527296-2527315 None:intergenic 60.0%
!! GGACTCAGTGGTTGGCTTCC+AGG - chr2.1:2527834-2527853 MS.gene36243:intron 60.0%
ACCCGTCCCGTGGCGATACT+TGG - chr2.1:2527291-2527310 MS.gene36243:intron 65.0%
ACGGGACGGGTAGGAGCAGT+AGG + chr2.1:2527282-2527301 None:intergenic 65.0%
AGTATCGCCACGGGACGGGT+AGG + chr2.1:2527291-2527310 None:intergenic 65.0%
CGGGACGGGTAGGAGCAGTA+GGG + chr2.1:2527281-2527300 None:intergenic 65.0%
CGTCCCGTGGCGATACTTGG+TGG - chr2.1:2527294-2527313 MS.gene36243:intron 65.0%
TACTGCTCCTACCCGTCCCG+TGG - chr2.1:2527281-2527300 MS.gene36243:intron 65.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 2525821 2528693 2525821 ID=MS.gene36243
chr2.1 mRNA 2525821 2528693 2525821 ID=MS.gene36243.t1;Parent=MS.gene36243
chr2.1 exon 2528663 2528693 2528663 ID=MS.gene36243.t1.exon1;Parent=MS.gene36243.t1
chr2.1 CDS 2528663 2528693 2528663 ID=cds.MS.gene36243.t1;Parent=MS.gene36243.t1
chr2.1 exon 2528091 2528205 2528091 ID=MS.gene36243.t1.exon2;Parent=MS.gene36243.t1
chr2.1 CDS 2528091 2528205 2528091 ID=cds.MS.gene36243.t1;Parent=MS.gene36243.t1
chr2.1 exon 2527400 2527436 2527400 ID=MS.gene36243.t1.exon3;Parent=MS.gene36243.t1
chr2.1 CDS 2527400 2527436 2527400 ID=cds.MS.gene36243.t1;Parent=MS.gene36243.t1
chr2.1 exon 2527181 2527250 2527181 ID=MS.gene36243.t1.exon4;Parent=MS.gene36243.t1
chr2.1 CDS 2527181 2527250 2527181 ID=cds.MS.gene36243.t1;Parent=MS.gene36243.t1
chr2.1 exon 2526986 2527090 2526986 ID=MS.gene36243.t1.exon5;Parent=MS.gene36243.t1
chr2.1 CDS 2526986 2527090 2526986 ID=cds.MS.gene36243.t1;Parent=MS.gene36243.t1
chr2.1 exon 2526652 2526802 2526652 ID=MS.gene36243.t1.exon6;Parent=MS.gene36243.t1
chr2.1 CDS 2526652 2526802 2526652 ID=cds.MS.gene36243.t1;Parent=MS.gene36243.t1
chr2.1 exon 2526437 2526519 2526437 ID=MS.gene36243.t1.exon7;Parent=MS.gene36243.t1
chr2.1 CDS 2526437 2526519 2526437 ID=cds.MS.gene36243.t1;Parent=MS.gene36243.t1
chr2.1 exon 2525994 2526087 2525994 ID=MS.gene36243.t1.exon8;Parent=MS.gene36243.t1
chr2.1 CDS 2525994 2526087 2525994 ID=cds.MS.gene36243.t1;Parent=MS.gene36243.t1
chr2.1 exon 2525821 2525908 2525821 ID=MS.gene36243.t1.exon9;Parent=MS.gene36243.t1
chr2.1 CDS 2525821 2525908 2525821 ID=cds.MS.gene36243.t1;Parent=MS.gene36243.t1
Gene Sequence

>MS.gene36243

ATGAGTCACGCGCATTCTCATATCGGCTCTGGTCTGTTCTTTTTGCTCCATTTTATTATTTTCTCTTATCCTTCTTTGCAACTTGCATGAATTTTAGTCTGTAGATTGCTATAAGTGCATGTTTGGAGTCACAACGGTTTGATGAAATCATGTTGACACTGTGATTTTGTTGAAGCTCTAAACCGTAGCTTATGCAAAAATCACAGTGACACACTATGATTCTGTCAAACTCGTCGTGAATCCAAATATGCACCAAGTCAATTACATGATCTTTTTTTGGCTCTTTATTTGTTGTTTAAAGAGTTAAAACTCACATGTAAATAATGTTTTCCTCTAGCATGTTGCATTGCTGAACTTCAATGCAAATTTGCTAGGTCCGTTTGAAGGATTGTAATCAATATTTTTACCTCATGTTTTGACATCTATCAGCTATGTTTAAACTTAGTATGTTCTTGAGTAGTAGCTTTCTTTCTTGTTTACAATTACAGGTAGTAGAACTACTCGACGAACTTTCGAATTCGGGAAGACACATGTAGTGAGGCCTAAAGGAAAACATCAAGCTACTATAGTTTGGTTGCATGGACTTGGTGATAATGGTTTGAGGTATAAATGTTATCCCTTTCTAACACTGCTATATGTCATGCAAACATCATCATAAGTCATCATAAGACATAACCATTGGTTATTCCTTCTCCTACTTGTTCTGTTTTGTACTTTTCCTTTCTTTCCACAACCTCTCTTTTTCCTTTTCTCTTTTACTCTTCTCTTTCCAATATTTCTGTTTTTCTTTGTGTGTGTGTTTTGTTTCATTCTTTTGTTCAAGTACACAATCCGTATATGAAAGATAAAACCATTATGGGAAAGAATATGAACTATATTAGGGGTATTCCTTATGTTGAATGTTTTAAGTATTGAAGTTCTTTCTGGTTAGATTCCACATGGAATATATTCTGCTGAAAAAAGTTGTGATTATAATTGTTGGAAGCTTGGTTGTGAAGAGTATATACTAAATTCTCTACCTATATGAGTATTGACAAAAGAATATATAATATGAATAGAAACTGGCACATTCTAGATATATTCTTTGTTGTTTTTAGTGTGGACACATACAATACAATTGAGTTTGAGCATTTCAATGTATGGTTGAGTATTTTTATGTTAGACAATTTTTATCTGGGAAATGAGAAACTTAATTGATGTCAGATTTAATGGCCAGAAACATGCTTATCTGATTTTTGGTGTTTTGTTTCTCTGCAGCTCATCTCAGTTGTTGGAATCACTTCCACTTCCAAATGTAAGAATATTTATTTATATCTTCAATCAATTTGAGATTATCTTAAATGCTTCTCTAGGCTAATATTCTCACTCCATAACTAAAATAATATTTTGATAACTCATGAGTGCTATAATGTTACTTTCTTATGATATGATGATATGATACAGATAAAATGGATTTGCCCTACTGCTCCTACCCGTCCCGTGGCGATACTTGGTGGTTTTCCCTGCACTGCATGTAATTTTTATTTTCTCACCTAATTTTTGTTAATTTATTTAGGGCACTAAACAAGTCTAATTAACTTGGTGATTGAACAATAATCTGCAGGGTTTGATGTGGGGGAGCTTTCAGAAGATGGTCCAGATGATTGGGAGGGTTTGGATGCTTCAGCAGCACATATCGCTAACTTGTTGTCAACAGAGCCAGCAGATGGTTGGTACTTTTCAAGGCTTTAATTTAATTAATACTCCCTCCGTCCCTATATGTAAGCACCGTTTGCCTCTAATAAAAGGGTGCTTAGATATAGGGACAGAGGGAGTAATAACACATTAACATTTTTTTGGACCTTAATTAAGGTTGGTAGCTTGAATGTATTATATGATTATTATGTGACAGTGAAGGTTGGCATTGGAGGGTTCAGCATGGGTGCAGCAATTGCATTATACTCTGCAACATGCTATGCCATGGGAAGGTATGGAAATGGCATCCCATATCCTGTAAATTTAAGAGCAGTTGTTGGACTCAGTGGTTGGCTTCCAGGATCAAGGTATCCTATATTATAACACTACTATTTGCTCTATAATTTTGATCAGAAGTTTAGCACATATTTGCTCTACTATTTTCTCATCAGTTTCACAATAATCATTTGGCTAATGTGTTGGAATCTGCTATCGTGTAGGAGCTTAGGGAACAAGATAGAAGTGTCACATGAAGCGAGAAGGCGAGCTGCTTCGTTACCAATTTTACAGTGTCACGGAATCAGTACGCATCTATAAATCTTATATACTGATATAACTAGGTCGCGCATTTTCAATCTCAACTATCTGATCTCAAATTAACAGTCAAGATTGCTTTAAACTGATTTTGTTATTCTGTAATCTAAACCGTACAATCTCATATTAACGGTCAATATCATTTTCAGCGTAAAAACGCATGTTTTTACCACTGCATGAAATCTGGATTCTGTTCACAAATGTAACACTATCTTTTATTGCATAAGATTCTAGCAATCGCAAAAAATTTATAGCATATTTGGAATGGTTCCTTTTGCTACTATTATTACTATGTCTGTACATGATTAAGCATTAAGATCAAAGCATTCATTTTGTAGGTGATGATGTAGTACCCTGCAAGTATGGAGAGAAATCTGCTCAATCCTTAAGTTCAGCAGGGTTTCGATATGTTGCATTCAAATCCTATGAAGGGTAAGATGAAATCAATCATAACACTAATGAAACATGTGAGTTATTAGAACAGTTATCTCAGTTTGTTGGTTTCTGATGCATGCAGGCTTGGTCATTACACAGTTCCAAGAGAGATGGGTGAAGTTTCCACCTGGCTTAGTTCAAGGTTGGGACTTGAAGGATTTTCGTCGTAA
Protein sequence

>MS.gene36243.t1

MSHAHSHIGSGSRTTRRTFEFGKTHVVRPKGKHQATIVWLHGLGDNGLSSSQLLESLPLPNIKWICPTAPTRPVAILGGFPCTAWFDVGELSEDGPDDWEGLDASAAHIANLLSTEPADVKVGIGGFSMGAAIALYSATCYAMGRYGNGIPYPVNLRAVVGLSGWLPGSRSLGNKIEVSHEARRRAASLPILQCHGISDDVVPCKYGEKSAQSLSSAGFRYVAFKSYEGLGHYTVPREMGEVSTWLSSRLGLEGFSS