Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37311.t1 | XP_013454687.1 | 97.5 | 282 | 5 | 1 | 1 | 282 | 1 | 280 | 4.90E-158 | 567 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37311.t1 | P0CL95 | 30.6 | 245 | 132 | 8 | 30 | 253 | 10 | 237 | 6.5e-26 | 119.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37311.t1 | A0A072UHW3 | 97.5 | 282 | 5 | 1 | 1 | 282 | 1 | 280 | 3.5e-158 | 567.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene37311 | MS.gene86352 | PPI |
| MS.gene026794 | MS.gene37311 | PPI |
| MS.gene034040 | MS.gene37311 | PPI |
| MS.gene067344 | MS.gene37311 | PPI |
| MS.gene37311 | MS.gene89061 | PPI |
| MS.gene89061 | MS.gene37311 | PPI |
| MS.gene034042 | MS.gene37311 | PPI |
| MS.gene067343 | MS.gene37311 | PPI |
| MS.gene038854 | MS.gene37311 | PPI |
| MS.gene83338 | MS.gene37311 | PPI |
| MS.gene79485 | MS.gene37311 | PPI |
| MS.gene86352 | MS.gene37311 | PPI |
| MS.gene36243 | MS.gene37311 | PPI |
| MS.gene034041 | MS.gene37311 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37311.t1 | MTR_4g011320 | 97.518 | 282 | 5 | 1 | 1 | 282 | 1 | 280 | 0.0 | 565 |
| MS.gene37311.t1 | MTR_2g103140 | 83.077 | 260 | 41 | 2 | 1 | 260 | 1 | 257 | 2.77e-146 | 410 |
| MS.gene37311.t1 | MTR_2g054780 | 65.844 | 243 | 83 | 0 | 15 | 257 | 10 | 252 | 9.62e-119 | 341 |
| MS.gene37311.t1 | MTR_3g107630 | 67.797 | 236 | 76 | 0 | 22 | 257 | 19 | 254 | 1.30e-116 | 335 |
| MS.gene37311.t1 | MTR_2g054780 | 63.786 | 243 | 81 | 1 | 15 | 257 | 10 | 245 | 5.95e-112 | 323 |
| MS.gene37311.t1 | MTR_4g132890 | 30.088 | 226 | 131 | 8 | 37 | 253 | 4 | 211 | 1.83e-19 | 84.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37311.t1 | AT1G52700 | 73.684 | 247 | 63 | 1 | 11 | 257 | 9 | 253 | 2.64e-130 | 370 |
| MS.gene37311.t1 | AT1G52700 | 73.684 | 247 | 63 | 1 | 11 | 257 | 9 | 253 | 2.64e-130 | 370 |
| MS.gene37311.t1 | AT1G52700 | 73.469 | 245 | 63 | 1 | 13 | 257 | 2 | 244 | 6.60e-129 | 366 |
| MS.gene37311.t1 | AT3G15650 | 66.667 | 276 | 69 | 2 | 1 | 257 | 1 | 272 | 2.48e-126 | 361 |
| MS.gene37311.t1 | AT3G15650 | 71.595 | 257 | 69 | 1 | 1 | 257 | 1 | 253 | 8.82e-123 | 351 |
| MS.gene37311.t1 | AT3G15650 | 69.962 | 263 | 73 | 1 | 1 | 257 | 1 | 263 | 1.45e-121 | 348 |
| MS.gene37311.t1 | AT5G20060 | 64.257 | 249 | 88 | 1 | 9 | 257 | 5 | 252 | 2.80e-120 | 345 |
| MS.gene37311.t1 | AT5G20060 | 64.257 | 249 | 88 | 1 | 9 | 257 | 5 | 252 | 2.80e-120 | 345 |
| MS.gene37311.t1 | AT5G20060 | 64.257 | 249 | 88 | 1 | 9 | 257 | 5 | 252 | 2.80e-120 | 345 |
| MS.gene37311.t1 | AT5G20060 | 64.257 | 249 | 88 | 1 | 9 | 257 | 5 | 252 | 2.80e-120 | 345 |
| MS.gene37311.t1 | AT1G52700 | 73.134 | 201 | 54 | 0 | 57 | 257 | 1 | 201 | 3.19e-105 | 305 |
| MS.gene37311.t1 | AT1G52700 | 75.661 | 189 | 44 | 1 | 11 | 199 | 9 | 195 | 1.51e-100 | 293 |
| MS.gene37311.t1 | AT1G52700 | 75.661 | 189 | 44 | 1 | 11 | 199 | 9 | 195 | 1.51e-100 | 293 |
| MS.gene37311.t1 | AT1G51300 | 39.924 | 263 | 141 | 3 | 6 | 257 | 8 | 264 | 6.44e-59 | 189 |
| MS.gene37311.t1 | AT1G51300 | 41.667 | 216 | 118 | 2 | 16 | 229 | 27 | 236 | 6.67e-54 | 176 |
| MS.gene37311.t1 | AT1G52695 | 42.857 | 210 | 113 | 2 | 14 | 222 | 3 | 206 | 4.01e-52 | 170 |
| MS.gene37311.t1 | AT1G51300 | 43.312 | 157 | 81 | 2 | 16 | 170 | 16 | 166 | 7.54e-41 | 140 |
| MS.gene37311.t1 | AT1G47786 | 46.296 | 162 | 75 | 4 | 16 | 173 | 33 | 186 | 2.56e-37 | 130 |
| MS.gene37311.t1 | AT1G52470 | 37.383 | 214 | 116 | 5 | 22 | 235 | 13 | 208 | 7.58e-37 | 131 |
| MS.gene37311.t1 | AT1G52460 | 38.095 | 231 | 116 | 7 | 29 | 255 | 13 | 220 | 1.34e-35 | 127 |
| MS.gene37311.t1 | AT1G52470 | 39.326 | 178 | 90 | 5 | 22 | 199 | 13 | 172 | 2.99e-32 | 117 |
| MS.gene37311.t1 | AT1G52470 | 39.326 | 178 | 90 | 5 | 22 | 199 | 13 | 172 | 3.17e-32 | 117 |
| MS.gene37311.t1 | AT1G52440 | 34.135 | 208 | 84 | 4 | 29 | 234 | 17 | 173 | 9.26e-27 | 103 |
| MS.gene37311.t1 | AT1G47780 | 52.727 | 110 | 49 | 1 | 64 | 173 | 23 | 129 | 5.37e-26 | 99.8 |
| MS.gene37311.t1 | AT4G22300 | 31.050 | 219 | 124 | 7 | 40 | 249 | 51 | 251 | 9.71e-22 | 92.0 |
| MS.gene37311.t1 | AT4G22305 | 31.507 | 219 | 123 | 8 | 40 | 249 | 6 | 206 | 1.00e-20 | 88.6 |
Find 79 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGCTCATGCCTGGGGCTT+GGG | 0.096496 | 4.4:+88097140 | MS.gene37311:CDS |
| TGGCTCATGCCTGGGGCTTG+GGG | 0.138001 | 4.4:+88097141 | MS.gene37311:CDS |
| CTTGGCTCATGCCTGGGGCT+TGG | 0.151372 | 4.4:+88097139 | MS.gene37311:CDS |
| CAATTGGCTTGGCTCATGCC+TGG | 0.224859 | 4.4:+88097132 | MS.gene37311:CDS |
| CTCAACTTAAGAGCAGTTAT+TGG | 0.234690 | 4.4:+88096106 | MS.gene37311:CDS |
| AGAAGAACTAATTTGGAGTT+TGG | 0.266947 | 4.4:+88094576 | MS.gene37311:CDS |
| GTTATATGATGCAGATAAAA+TGG | 0.282666 | 4.4:+88095477 | MS.gene37311:intron |
| GGACTAAGTGGCTGGCTTCC+AGG | 0.288410 | 4.4:+88096127 | MS.gene37311:CDS |
| TATCAAATGGGGTCTGGTTC+TGG | 0.310234 | 4.4:+88094238 | MS.gene37311:CDS |
| AATTGGCTTGGCTCATGCCT+GGG | 0.311627 | 4.4:+88097133 | MS.gene37311:CDS |
| ACAATAATCAGGGTTTGATA+TGG | 0.314213 | 4.4:+88095677 | MS.gene37311:intron |
| AACTGCTAGAAGAACTAATT+TGG | 0.328772 | 4.4:+88094569 | MS.gene37311:CDS |
| CTGCATGGTCTTGGAGATAA+TGG | 0.359696 | 4.4:+88094651 | MS.gene37311:CDS |
| GAACCATGCATGTTATCAAA+TGG | 0.366787 | 4.4:+88094225 | MS.gene37311:CDS |
| TGGGATTGGAGGCTTCAGTA+TGG | 0.372915 | 4.4:+88096012 | MS.gene37311:CDS |
| GATGTAGTCCTCTACAAATA+TGG | 0.381501 | 4.4:+88096675 | MS.gene37311:CDS |
| CAGGCATGAGCCAAGCCAAT+TGG | 0.382122 | 4.4:-88097131 | None:intergenic |
| ATAGTCTGGCTGCATGGTCT+TGG | 0.385531 | 4.4:+88094642 | MS.gene37311:CDS |
| CAGATGATGGTCCAGATGAT+TGG | 0.393245 | 4.4:+88095709 | MS.gene37311:CDS |
| AACCATGCATGTTATCAAAT+GGG | 0.399917 | 4.4:+88094226 | MS.gene37311:CDS |
| TATTGTGGTATAGTGAAAGT+TGG | 0.404396 | 4.4:+88095992 | MS.gene37311:intron |
| GGCTCATGCCTGGGGCTTGG+GGG | 0.436395 | 4.4:+88097142 | MS.gene37311:CDS |
| GCTCAAACCTTGTGTTCAGC+AGG | 0.437434 | 4.4:+88096708 | MS.gene37311:CDS |
| ATTGTGGTATAGTGAAAGTT+GGG | 0.439268 | 4.4:+88095993 | MS.gene37311:intron |
| CAATAATCAGGGTTTGATAT+GGG | 0.441882 | 4.4:+88095678 | MS.gene37311:intron |
| ACTTGATGCCATATTATTTG+AGG | 0.443726 | 4.4:-88097167 | None:intergenic |
| CTTGATGCCATATTATTTGA+GGG | 0.445143 | 4.4:-88097166 | None:intergenic |
| TCTAAACCCTCCCAATCATC+TGG | 0.452958 | 4.4:-88095720 | None:intergenic |
| ACAGGTCGGGTAGGAGCAGT+TGG | 0.454599 | 4.4:-88095506 | None:intergenic |
| TATAACATTCAAATCCTATG+AGG | 0.464278 | 4.4:+88096740 | MS.gene37311:CDS |
| AGATGATGGTCCAGATGATT+GGG | 0.466419 | 4.4:+88095710 | MS.gene37311:CDS |
| AACATCAAGCAACTATAGTC+TGG | 0.471029 | 4.4:+88094628 | MS.gene37311:CDS |
| GCCATGGGAAGGTATGGAAA+TGG | 0.473050 | 4.4:+88096070 | MS.gene37311:CDS |
| TGCTCTTAAGTTGAGACTGC+AGG | 0.479567 | 4.4:-88096098 | None:intergenic |
| GGGATTGGAGGCTTCAGTAT+GGG | 0.484847 | 4.4:+88096013 | MS.gene37311:CDS |
| ATTGTTGTATACCTTGATCC+TGG | 0.487269 | 4.4:-88096145 | None:intergenic |
| TTGGAAGTGGAAGTGATTCA+AGG | 0.493512 | 4.4:-88095225 | None:intergenic |
| GCATGTTATCAAATGGGGTC+TGG | 0.494637 | 4.4:+88094232 | MS.gene37311:CDS |
| GCTGAAGTCTCCAATTGGCT+TGG | 0.496475 | 4.4:+88097121 | MS.gene37311:CDS |
| ATAGTGAAAGTTGGGATTGG+AGG | 0.499249 | 4.4:+88096001 | MS.gene37311:intron |
| TACAAACTTACATTTGGAAG+TGG | 0.499274 | 4.4:-88095238 | None:intergenic |
| ATTGGCTTGGCTCATGCCTG+GGG | 0.502183 | 4.4:+88097134 | MS.gene37311:CDS |
| AGATGGCTGAAGTCTCCAAT+TGG | 0.504814 | 4.4:+88097116 | MS.gene37311:CDS |
| GGTATAGTGAAAGTTGGGAT+TGG | 0.506683 | 4.4:+88095998 | MS.gene37311:intron |
| GCCTTGAAAGTACCATCAGC+TGG | 0.508974 | 4.4:-88095783 | None:intergenic |
| CAGTTATTGGACTAAGTGGC+TGG | 0.511811 | 4.4:+88096119 | MS.gene37311:CDS |
| ACCCGACCTGTAGCTATACT+TGG | 0.523563 | 4.4:+88095518 | MS.gene37311:CDS |
| GAGACTTCAGCCATCTCTCT+AGG | 0.530300 | 4.4:-88097109 | None:intergenic |
| ACACATGTAGTGAGACCTAA+AGG | 0.532303 | 4.4:+88094603 | MS.gene37311:CDS |
| ACCAAGTATAGCTACAGGTC+GGG | 0.532936 | 4.4:-88095519 | None:intergenic |
| CTCAAACCTTGTGTTCAGCA+GGG | 0.534728 | 4.4:+88096709 | MS.gene37311:CDS |
| GTGGCTGGCTTCCAGGATCA+AGG | 0.539805 | 4.4:+88096134 | MS.gene37311:CDS |
| GTCTTGGAGATAATGGTTTG+AGG | 0.543260 | 4.4:+88094658 | MS.gene37311:CDS |
| AGAGCAGTTATTGGACTAAG+TGG | 0.552676 | 4.4:+88096115 | MS.gene37311:CDS |
| ATAACATTCAAATCCTATGA+GGG | 0.562724 | 4.4:+88096741 | MS.gene37311:CDS |
| AAGCCACCAAGTATAGCTAC+AGG | 0.562898 | 4.4:-88095524 | None:intergenic |
| CAGGTCGGGTAGGAGCAGTT+GGG | 0.563753 | 4.4:-88095505 | None:intergenic |
| GCTCTTAAGTTGAGACTGCA+GGG | 0.570121 | 4.4:-88096097 | None:intergenic |
| CGACCTGTAGCTATACTTGG+TGG | 0.573380 | 4.4:+88095521 | MS.gene37311:CDS |
| GCCATTTCCATACCTTCCCA+TGG | 0.577058 | 4.4:-88096071 | None:intergenic |
| ATGGGAGAACTATCAGATGA+TGG | 0.578285 | 4.4:+88095696 | MS.gene37311:CDS |
| TTGAAACCCTGCTGAACACA+AGG | 0.578854 | 4.4:-88096715 | None:intergenic |
| GCAACTATAGTCTGGCTGCA+TGG | 0.583738 | 4.4:+88094636 | MS.gene37311:CDS |
| ACCCCATTTGATAACATGCA+TGG | 0.589572 | 4.4:-88094228 | None:intergenic |
| ACTTCTCTCCATATTTGTAG+AGG | 0.592373 | 4.4:-88096683 | None:intergenic |
| AATTGTCACATGAAGCAAGA+AGG | 0.595405 | 4.4:+88096336 | MS.gene37311:CDS |
| TTATACAGTTCCTAGAGAGA+TGG | 0.595540 | 4.4:+88097099 | MS.gene37311:CDS |
| ATAGTGACATACTAATTCCA+TGG | 0.603581 | 4.4:-88096388 | None:intergenic |
| CACCAAGTATAGCTACAGGT+CGG | 0.615230 | 4.4:-88095520 | None:intergenic |
| TTAAGTTGAGACTGCAGGGG+AGG | 0.616117 | 4.4:-88096093 | None:intergenic |
| TTGTCAACTGAGCCAGCTGA+TGG | 0.618407 | 4.4:+88095771 | MS.gene37311:CDS |
| AGTATAGCTACAGGTCGGGT+AGG | 0.625069 | 4.4:-88095515 | None:intergenic |
| TGATGGTCCAGATGATTGGG+AGG | 0.628482 | 4.4:+88095713 | MS.gene37311:CDS |
| ACCATGCATGTTATCAAATG+GGG | 0.644999 | 4.4:+88094227 | MS.gene37311:CDS |
| GATGGTCCAGATGATTGGGA+GGG | 0.653067 | 4.4:+88095714 | MS.gene37311:CDS |
| ATTTGCAATATGTGCTGCTG+AGG | 0.655308 | 4.4:-88095745 | None:intergenic |
| GTCATGTTGTAGAAGACATG+CGG | 0.655778 | 4.4:+88097188 | MS.gene37311:CDS |
| TAACATTCAAATCCTATGAG+GGG | 0.669236 | 4.4:+88096742 | MS.gene37311:CDS |
| CTCTTAAGTTGAGACTGCAG+GGG | 0.679564 | 4.4:-88096096 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATAATTTTTTTAAAAAA+AGG | - | chr4.4:88096772-88096791 | None:intergenic | 0.0% |
| !!! | AAAAGTTGTTATTTTTTTAT+AGG | + | chr4.4:88094870-88094889 | MS.gene37311:intron | 10.0% |
| !!! | AAATCTTTATATTTTTTATG+AGG | - | chr4.4:88095829-88095848 | None:intergenic | 10.0% |
| !!! | AATCTTTATATTTTTTATGA+GGG | - | chr4.4:88095828-88095847 | None:intergenic | 10.0% |
| !! | AAAAAAAGTAGTAGTTAATT+TGG | - | chr4.4:88094783-88094802 | None:intergenic | 15.0% |
| !! | CATAATAAAAAATTTAAGCT+TGG | + | chr4.4:88095179-88095198 | MS.gene37311:intron | 15.0% |
| !! | GTATACAACAATATTATTTA+GGG | + | chr4.4:88096156-88096175 | MS.gene37311:intron | 15.0% |
| !! | TTGTTAAATAGCAAAATATA+AGG | - | chr4.4:88095661-88095680 | None:intergenic | 15.0% |
| !!! | ATTTGGTTTTTTATTTAAGT+AGG | + | chr4.4:88096428-88096447 | MS.gene37311:intron | 15.0% |
| !!! | TAAAAATGAATTTTCAAGAA+AGG | - | chr4.4:88094299-88094318 | None:intergenic | 15.0% |
| !! | AAAATCTTATAGAAAACTAG+AGG | - | chr4.4:88095577-88095596 | None:intergenic | 20.0% |
| !! | AAATCTTATAGAAAACTAGA+GGG | - | chr4.4:88095576-88095595 | None:intergenic | 20.0% |
| !! | AGATAGTAAATTATATCACA+AGG | + | chr4.4:88094755-88094774 | MS.gene37311:intron | 20.0% |
| !! | AGTACACATTATTAAATCTT+TGG | + | chr4.4:88096224-88096243 | MS.gene37311:intron | 20.0% |
| !! | ATCTAATTGTATTGAAAAGA+TGG | - | chr4.4:88094692-88094711 | None:intergenic | 20.0% |
| !! | CAACAAAAAAAAATTATGCA+TGG | - | chr4.4:88094326-88094345 | None:intergenic | 20.0% |
| !! | GATAGTAAATTATATCACAA+GGG | + | chr4.4:88094756-88094775 | MS.gene37311:intron | 20.0% |
| !! | GGTATACAACAATATTATTT+AGG | + | chr4.4:88096155-88096174 | MS.gene37311:intron | 20.0% |
| !! | TCAACTATGAAATAATAAAG+CGG | + | chr4.4:88096809-88096828 | MS.gene37311:intron | 20.0% |
| !!! | ACTTGACATGAATTTTTTTT+TGG | + | chr4.4:88094975-88094994 | MS.gene37311:intron | 20.0% |
| !!! | AGTTGTTATTTTTTTATAGG+TGG | + | chr4.4:88094873-88094892 | MS.gene37311:intron | 20.0% |
| !!! | ATAGTTGATATTATAAACCA+TGG | - | chr4.4:88094516-88094535 | None:intergenic | 20.0% |
| !!! | ATATCTAAAATTCATTTGTC+AGG | + | chr4.4:88096648-88096667 | MS.gene37311:intron | 20.0% |
| !!! | CTAAAACATCATTTTTATTG+TGG | + | chr4.4:88095977-88095996 | MS.gene37311:intron | 20.0% |
| !!! | TTGCTATTTAACAATAATCA+GGG | + | chr4.4:88095667-88095686 | MS.gene37311:intron | 20.0% |
| !!! | TTTGCTATTTAACAATAATC+AGG | + | chr4.4:88095666-88095685 | MS.gene37311:intron | 20.0% |
| !!! | TTTTTATTTAAGTAGGATGT+TGG | + | chr4.4:88096435-88096454 | MS.gene37311:intron | 20.0% |
| ! | AAAGAAAGGTAATGTAATCA+AGG | - | chr4.4:88094492-88094511 | None:intergenic | 25.0% |
| ! | AAATACTATAGAGCTATGTA+CGG | - | chr4.4:88095418-88095437 | None:intergenic | 25.0% |
| ! | AAGTAGAAACTTAAAGCAAT+CGG | + | chr4.4:88096936-88096955 | MS.gene37311:intron | 25.0% |
| ! | ACATCTTAATATGTGACATT+TGG | + | chr4.4:88096411-88096430 | MS.gene37311:intron | 25.0% |
| ! | AGAAAAACAAAGTTATCATG+TGG | - | chr4.4:88094942-88094961 | None:intergenic | 25.0% |
| ! | ATAACATTCAAATCCTATGA+GGG | + | chr4.4:88096741-88096760 | MS.gene37311:CDS | 25.0% |
| ! | CATTTGTATCAATGTTATGT+CGG | - | chr4.4:88096535-88096554 | None:intergenic | 25.0% |
| ! | GTTATATGATGCAGATAAAA+TGG | + | chr4.4:88095477-88095496 | MS.gene37311:intron | 25.0% |
| ! | TACACAATTCTGATTTAGTA+AGG | - | chr4.4:88095603-88095622 | None:intergenic | 25.0% |
| ! | TATAACATTCAAATCCTATG+AGG | + | chr4.4:88096740-88096759 | MS.gene37311:CDS | 25.0% |
| ! | TCAAATAGAATCTCAATAGA+AGG | - | chr4.4:88094834-88094853 | None:intergenic | 25.0% |
| ! | TGAGAATACAAACTTACATT+TGG | - | chr4.4:88095247-88095266 | None:intergenic | 25.0% |
| ! | TTATAAACCATGGTAAAGAA+AGG | - | chr4.4:88094506-88094525 | None:intergenic | 25.0% |
| ! | TTTGCAATTGATGTTAATGT+AGG | + | chr4.4:88096294-88096313 | MS.gene37311:intron | 25.0% |
| !! | CTATTTGAGATAAATTCTGT+TGG | + | chr4.4:88094846-88094865 | MS.gene37311:intron | 25.0% |
| !! | TTTATCATCTAGTTTAATCG+TGG | - | chr4.4:88096900-88096919 | None:intergenic | 25.0% |
| !! | TTTTACAACTATATACTCGA+AGG | - | chr4.4:88096196-88096215 | None:intergenic | 25.0% |
| !!! | AGCAATTGTTTTTCACTTTT+TGG | + | chr4.4:88097050-88097069 | MS.gene37311:intron | 25.0% |
| !!! | TATGCTGTATGTTTTTAGTA+TGG | + | chr4.4:88094802-88094821 | MS.gene37311:intron | 25.0% |
| AAAGGAAAATTTCTTGCAAG+GGG | - | chr4.4:88094281-88094300 | None:intergenic | 30.0% | |
| AACCATGCATGTTATCAAAT+GGG | + | chr4.4:88094226-88094245 | MS.gene37311:CDS | 30.0% | |
| AACTGCTAGAAGAACTAATT+TGG | + | chr4.4:88094569-88094588 | MS.gene37311:CDS | 30.0% | |
| AATCTTTGGTTGTTTACATG+TGG | + | chr4.4:88096238-88096257 | MS.gene37311:intron | 30.0% | |
| ACAAAAATTACCATTGAGTC+AGG | + | chr4.4:88095067-88095086 | MS.gene37311:intron | 30.0% | |
| ACAATAATCAGGGTTTGATA+TGG | + | chr4.4:88095677-88095696 | MS.gene37311:intron | 30.0% | |
| ACAGACAAACACATAGATAT+TGG | - | chr4.4:88095393-88095412 | None:intergenic | 30.0% | |
| ACTTGATGCCATATTATTTG+AGG | - | chr4.4:88097170-88097189 | None:intergenic | 30.0% | |
| AGAAAGGAAAATTTCTTGCA+AGG | - | chr4.4:88094283-88094302 | None:intergenic | 30.0% | |
| ATACTTTATATGCCCTTTGA+AGG | + | chr4.4:88094540-88094559 | MS.gene37311:intron | 30.0% | |
| ATAGTGACATACTAATTCCA+TGG | - | chr4.4:88096391-88096410 | None:intergenic | 30.0% | |
| ATTAAAATGACCTGACTCAA+TGG | - | chr4.4:88095080-88095099 | None:intergenic | 30.0% | |
| ATTGTGGTATAGTGAAAGTT+GGG | + | chr4.4:88095993-88096012 | MS.gene37311:intron | 30.0% | |
| CAATAATCAGGGTTTGATAT+GGG | + | chr4.4:88095678-88095697 | MS.gene37311:intron | 30.0% | |
| CTTGATGCCATATTATTTGA+GGG | - | chr4.4:88097169-88097188 | None:intergenic | 30.0% | |
| GAAAGGAAAATTTCTTGCAA+GGG | - | chr4.4:88094282-88094301 | None:intergenic | 30.0% | |
| GAAGATAACAAACATCCATT+AGG | - | chr4.4:88095135-88095154 | None:intergenic | 30.0% | |
| GATCAAATCAGTGAAATCTT+TGG | + | chr4.4:88096853-88096872 | MS.gene37311:intron | 30.0% | |
| TAACATTCAAATCCTATGAG+GGG | + | chr4.4:88096742-88096761 | MS.gene37311:CDS | 30.0% | |
| TACAAACTTACATTTGGAAG+TGG | - | chr4.4:88095241-88095260 | None:intergenic | 30.0% | |
| TACATTACCTTTCTTTACCA+TGG | + | chr4.4:88094496-88094515 | MS.gene37311:intron | 30.0% | |
| TACTTTATATGCCCTTTGAA+GGG | + | chr4.4:88094541-88094560 | MS.gene37311:intron | 30.0% | |
| TATAGGTGGAAAGCTTAATT+TGG | + | chr4.4:88094887-88094906 | MS.gene37311:intron | 30.0% | |
| TATTGTGGTATAGTGAAAGT+TGG | + | chr4.4:88095992-88096011 | MS.gene37311:intron | 30.0% | |
| TGACAAATTGATCTGATCAT+CGG | + | chr4.4:88096998-88097017 | MS.gene37311:intron | 30.0% | |
| TTACTAAGATTCTGGACTAA+GGG | + | chr4.4:88094915-88094934 | MS.gene37311:intron | 30.0% | |
| ! | AGAAGAACTAATTTGGAGTT+TGG | + | chr4.4:88094576-88094595 | MS.gene37311:CDS | 30.0% |
| ! | GCAAATATGTGTTTTCCTAA+TGG | + | chr4.4:88095117-88095136 | MS.gene37311:intron | 30.0% |
| !! | AGTCAGGTCATTTTAATCTA+TGG | + | chr4.4:88095083-88095102 | MS.gene37311:intron | 30.0% |
| !!! | TTTGGCTTGTTATTTTGTGT+AGG | + | chr4.4:88097068-88097087 | MS.gene37311:intron | 30.0% |
| AAAAACAAGGAAGGTAGAGA+AGG | + | chr4.4:88097214-88097233 | MS.gene37311:CDS | 35.0% | |
| AACATCAAGCAACTATAGTC+TGG | + | chr4.4:88094628-88094647 | MS.gene37311:CDS | 35.0% | |
| AATTGTCACATGAAGCAAGA+AGG | + | chr4.4:88096336-88096355 | MS.gene37311:CDS | 35.0% | |
| ACCATGCATGTTATCAAATG+GGG | + | chr4.4:88094227-88094246 | MS.gene37311:CDS | 35.0% | |
| ACTTCTCTCCATATTTGTAG+AGG | - | chr4.4:88096686-88096705 | None:intergenic | 35.0% | |
| ATTGTTGTATACCTTGATCC+TGG | - | chr4.4:88096148-88096167 | None:intergenic | 35.0% | |
| CAAAGATTGTGACTATAGCT+TGG | - | chr4.4:88094371-88094390 | None:intergenic | 35.0% | |
| CATTTGAGCATTCAATGCAA+CGG | - | chr4.4:88096577-88096596 | None:intergenic | 35.0% | |
| CTCAACTTAAGAGCAGTTAT+TGG | + | chr4.4:88096106-88096125 | MS.gene37311:CDS | 35.0% | |
| GAACCATGCATGTTATCAAA+TGG | + | chr4.4:88094225-88094244 | MS.gene37311:CDS | 35.0% | |
| GATCAGATCAATTTGTCAGT+TGG | - | chr4.4:88096996-88097015 | None:intergenic | 35.0% | |
| GATGTAGTCCTCTACAAATA+TGG | + | chr4.4:88096675-88096694 | MS.gene37311:CDS | 35.0% | |
| GTTACTAAGATTCTGGACTA+AGG | + | chr4.4:88094914-88094933 | MS.gene37311:intron | 35.0% | |
| TCAGTGAAATCTTTGGATCA+TGG | + | chr4.4:88096860-88096879 | MS.gene37311:intron | 35.0% | |
| TCTCAAGTATGGATGGTAAA+AGG | - | chr4.4:88095270-88095289 | None:intergenic | 35.0% | |
| TCTTTGGATCATGGTTCAAT+TGG | + | chr4.4:88096869-88096888 | MS.gene37311:intron | 35.0% | |
| TGGAAGAGTTACTAAGATTC+TGG | + | chr4.4:88094907-88094926 | MS.gene37311:intron | 35.0% | |
| TTATACAGTTCCTAGAGAGA+TGG | + | chr4.4:88097099-88097118 | MS.gene37311:CDS | 35.0% | |
| ! | AATTGATCTGATCATCGGTT+TGG | + | chr4.4:88097003-88097022 | MS.gene37311:intron | 35.0% |
| ! | GTTGCTTGATGTTTTCCTTT+AGG | - | chr4.4:88094621-88094640 | None:intergenic | 35.0% |
| !!! | CTTGTTATTTTGTGTAGGCT+TGG | + | chr4.4:88097073-88097092 | MS.gene37311:intron | 35.0% |
| AAGGTTTGTGACTGTGATTG+TGG | - | chr4.4:88094473-88094492 | None:intergenic | 40.0% | |
| ACACATGTAGTGAGACCTAA+AGG | + | chr4.4:88094603-88094622 | MS.gene37311:CDS | 40.0% | |
| AGACATGCGGAACAAAAACA+AGG | + | chr4.4:88097201-88097220 | MS.gene37311:CDS | 40.0% | |
| AGAGCAGTTATTGGACTAAG+TGG | + | chr4.4:88096115-88096134 | MS.gene37311:CDS | 40.0% | |
| ATAGTGAAAGTTGGGATTGG+AGG | + | chr4.4:88096001-88096020 | MS.gene37311:intron | 40.0% | |
| ATGCGGAACAAAAACAAGGA+AGG | + | chr4.4:88097205-88097224 | MS.gene37311:CDS | 40.0% | |
| ATGGGAGAACTATCAGATGA+TGG | + | chr4.4:88095696-88095715 | MS.gene37311:CDS | 40.0% | |
| ATTCCATGGCTCAGAAAAAC+TGG | - | chr4.4:88096377-88096396 | None:intergenic | 40.0% | |
| CAATTGATGTAGCCGAAATG+TGG | + | chr4.4:88094417-88094436 | MS.gene37311:intron | 40.0% | |
| CCATCCATACTTGAGATTGA+AGG | + | chr4.4:88095274-88095293 | MS.gene37311:intron | 40.0% | |
| CCTTCAATCTCAAGTATGGA+TGG | - | chr4.4:88095277-88095296 | None:intergenic | 40.0% | |
| CTGATCAGAATGATGACATC+CGG | + | chr4.4:88095900-88095919 | MS.gene37311:intron | 40.0% | |
| GGTATAGTGAAAGTTGGGAT+TGG | + | chr4.4:88095998-88096017 | MS.gene37311:intron | 40.0% | |
| GTCATGTTGTAGAAGACATG+CGG | + | chr4.4:88097188-88097207 | MS.gene37311:CDS | 40.0% | |
| TAACGTCTGTGACCACATTT+CGG | - | chr4.4:88094432-88094451 | None:intergenic | 40.0% | |
| TTGGAAGTGGAAGTGATTCA+AGG | - | chr4.4:88095228-88095247 | None:intergenic | 40.0% | |
| TTGTGACTATAGCTTGGCTA+AGG | - | chr4.4:88094365-88094384 | None:intergenic | 40.0% | |
| ! | ACCCCATTTGATAACATGCA+TGG | - | chr4.4:88094231-88094250 | None:intergenic | 40.0% |
| ! | AGATGATGGTCCAGATGATT+GGG | + | chr4.4:88095710-88095729 | MS.gene37311:CDS | 40.0% |
| ! | ATTTGCAATATGTGCTGCTG+AGG | - | chr4.4:88095748-88095767 | None:intergenic | 40.0% |
| ! | GGAGATAATGGTTTGAGGTA+TGG | + | chr4.4:88094663-88094682 | MS.gene37311:intron | 40.0% |
| ! | GTCAGTTGGTTCAAGTCTAA+TGG | - | chr4.4:88096982-88097001 | None:intergenic | 40.0% |
| ! | GTCTTGGAGATAATGGTTTG+AGG | + | chr4.4:88094658-88094677 | MS.gene37311:CDS | 40.0% |
| ! | TGTGTATTCAGAAAGCGTAG+TGG | + | chr4.4:88096607-88096626 | MS.gene37311:intron | 40.0% |
| ! | TTACCAGTTTTTCTGAGCCA+TGG | + | chr4.4:88096371-88096390 | MS.gene37311:CDS | 40.0% |
| !!! | TCTGCAACTTGTTTTGCCAT+GGG | + | chr4.4:88096055-88096074 | MS.gene37311:CDS | 40.0% |
| !!! | TTCTGCAACTTGTTTTGCCA+TGG | + | chr4.4:88096054-88096073 | MS.gene37311:CDS | 40.0% |
| AAAAAAGGCTCACCCCTCAT+AGG | - | chr4.4:88096757-88096776 | None:intergenic | 45.0% | |
| AAGCCACCAAGTATAGCTAC+AGG | - | chr4.4:88095527-88095546 | None:intergenic | 45.0% | |
| AATCACGAGAACAATCGCAC+CGG | - | chr4.4:88095922-88095941 | None:intergenic | 45.0% | |
| ACCAAGTATAGCTACAGGTC+GGG | - | chr4.4:88095522-88095541 | None:intergenic | 45.0% | |
| AGATGGCTGAAGTCTCCAAT+TGG | + | chr4.4:88097116-88097135 | MS.gene37311:CDS | 45.0% | |
| CACCAAGTATAGCTACAGGT+CGG | - | chr4.4:88095523-88095542 | None:intergenic | 45.0% | |
| CACGCCTTCAATCTCAAGTA+TGG | - | chr4.4:88095281-88095300 | None:intergenic | 45.0% | |
| CAGTTATTGGACTAAGTGGC+TGG | + | chr4.4:88096119-88096138 | MS.gene37311:CDS | 45.0% | |
| CGGATGTCATCATTCTGATC+AGG | - | chr4.4:88095902-88095921 | None:intergenic | 45.0% | |
| CTCAAACCTTGTGTTCAGCA+GGG | + | chr4.4:88096709-88096728 | MS.gene37311:CDS | 45.0% | |
| GCATGTTATCAAATGGGGTC+TGG | + | chr4.4:88094232-88094251 | MS.gene37311:CDS | 45.0% | |
| TCTAAACCCTCCCAATCATC+TGG | - | chr4.4:88095723-88095742 | None:intergenic | 45.0% | |
| TGGGGGACCCTCAAATAATA+TGG | + | chr4.4:88097159-88097178 | MS.gene37311:CDS | 45.0% | |
| TTGAAACCCTGCTGAACACA+AGG | - | chr4.4:88096718-88096737 | None:intergenic | 45.0% | |
| ! | CAGATGATGGTCCAGATGAT+TGG | + | chr4.4:88095709-88095728 | MS.gene37311:CDS | 45.0% |
| ! | CTGCATGGTCTTGGAGATAA+TGG | + | chr4.4:88094651-88094670 | MS.gene37311:CDS | 45.0% |
| ! | TATATGCCCTTTGAAGGGAG+TGG | + | chr4.4:88094546-88094565 | MS.gene37311:intron | 45.0% |
| ! | TATCAAATGGGGTCTGGTTC+TGG | + | chr4.4:88094238-88094257 | MS.gene37311:CDS | 45.0% |
| ! | TGTTTTGCCATGGGAAGGTA+TGG | + | chr4.4:88096064-88096083 | MS.gene37311:CDS | 45.0% |
| !! | CTCTTAAGTTGAGACTGCAG+GGG | - | chr4.4:88096099-88096118 | None:intergenic | 45.0% |
| !! | GCTCTTAAGTTGAGACTGCA+GGG | - | chr4.4:88096100-88096119 | None:intergenic | 45.0% |
| !! | GTTTGTTGTCCGACATGTGT+GGG | + | chr4.4:88096506-88096525 | MS.gene37311:intron | 45.0% |
| !! | TGCTCTTAAGTTGAGACTGC+AGG | - | chr4.4:88096101-88096120 | None:intergenic | 45.0% |
| !! | TGTTTGTTGTCCGACATGTG+TGG | + | chr4.4:88096505-88096524 | MS.gene37311:intron | 45.0% |
| !!! | CAACTTGTTTTGCCATGGGA+AGG | + | chr4.4:88096059-88096078 | MS.gene37311:CDS | 45.0% |
| ACCCGACCTGTAGCTATACT+TGG | + | chr4.4:88095518-88095537 | MS.gene37311:CDS | 50.0% | |
| AGCAGTTCCACTCCCTTCAA+AGG | - | chr4.4:88094556-88094575 | None:intergenic | 50.0% | |
| AGTATAGCTACAGGTCGGGT+AGG | - | chr4.4:88095518-88095537 | None:intergenic | 50.0% | |
| ATAGTCTGGCTGCATGGTCT+TGG | + | chr4.4:88094642-88094661 | MS.gene37311:CDS | 50.0% | |
| CGACCTGTAGCTATACTTGG+TGG | + | chr4.4:88095521-88095540 | MS.gene37311:CDS | 50.0% | |
| GAGACTTCAGCCATCTCTCT+AGG | - | chr4.4:88097112-88097131 | None:intergenic | 50.0% | |
| GATGGTCCAGATGATTGGGA+GGG | + | chr4.4:88095714-88095733 | MS.gene37311:CDS | 50.0% | |
| GCAACTATAGTCTGGCTGCA+TGG | + | chr4.4:88094636-88094655 | MS.gene37311:CDS | 50.0% | |
| GCAGTTCCACTCCCTTCAAA+GGG | - | chr4.4:88094555-88094574 | None:intergenic | 50.0% | |
| GCCAGCTGATGGTACTTTCA+AGG | + | chr4.4:88095782-88095801 | MS.gene37311:intron | 50.0% | |
| GCCATTTCCATACCTTCCCA+TGG | - | chr4.4:88096074-88096093 | None:intergenic | 50.0% | |
| GCTCAAACCTTGTGTTCAGC+AGG | + | chr4.4:88096708-88096727 | MS.gene37311:CDS | 50.0% | |
| GCTGAAGTCTCCAATTGGCT+TGG | + | chr4.4:88097121-88097140 | MS.gene37311:CDS | 50.0% | |
| GGGATTGGAGGCTTCAGTAT+GGG | + | chr4.4:88096013-88096032 | MS.gene37311:CDS | 50.0% | |
| TGATGGTCCAGATGATTGGG+AGG | + | chr4.4:88095713-88095732 | MS.gene37311:CDS | 50.0% | |
| TGGGATTGGAGGCTTCAGTA+TGG | + | chr4.4:88096012-88096031 | MS.gene37311:CDS | 50.0% | |
| TGTGACTGTGATTGTGGTCG+CGG | - | chr4.4:88094467-88094486 | None:intergenic | 50.0% | |
| TTGTCAACTGAGCCAGCTGA+TGG | + | chr4.4:88095771-88095790 | MS.gene37311:CDS | 50.0% | |
| ! | GCCATGGGAAGGTATGGAAA+TGG | + | chr4.4:88096070-88096089 | MS.gene37311:CDS | 50.0% |
| !! | AATTGGCTTGGCTCATGCCT+GGG | + | chr4.4:88097133-88097152 | MS.gene37311:CDS | 50.0% |
| !! | GCCTTGAAAGTACCATCAGC+TGG | - | chr4.4:88095786-88095805 | None:intergenic | 50.0% |
| !! | TTAAGTTGAGACTGCAGGGG+AGG | - | chr4.4:88096096-88096115 | None:intergenic | 50.0% |
| CAGGCATGAGCCAAGCCAAT+TGG | - | chr4.4:88097134-88097153 | None:intergenic | 55.0% | |
| ! | TGTCGGTGTCCCACACATGT+CGG | - | chr4.4:88096518-88096537 | None:intergenic | 55.0% |
| !! | ATTGGCTTGGCTCATGCCTG+GGG | + | chr4.4:88097134-88097153 | MS.gene37311:CDS | 55.0% |
| !! | CAATTGGCTTGGCTCATGCC+TGG | + | chr4.4:88097132-88097151 | MS.gene37311:CDS | 55.0% |
| ACAGGTCGGGTAGGAGCAGT+TGG | - | chr4.4:88095509-88095528 | None:intergenic | 60.0% | |
| CAGGTCGGGTAGGAGCAGTT+GGG | - | chr4.4:88095508-88095527 | None:intergenic | 60.0% | |
| TTGGCTCATGCCTGGGGCTT+GGG | + | chr4.4:88097140-88097159 | MS.gene37311:CDS | 60.0% | |
| !! | GGACTAAGTGGCTGGCTTCC+AGG | + | chr4.4:88096127-88096146 | MS.gene37311:CDS | 60.0% |
| !! | GTGGCTGGCTTCCAGGATCA+AGG | + | chr4.4:88096134-88096153 | MS.gene37311:CDS | 60.0% |
| CTTGGCTCATGCCTGGGGCT+TGG | + | chr4.4:88097139-88097158 | MS.gene37311:CDS | 65.0% | |
| TGGCTCATGCCTGGGGCTTG+GGG | + | chr4.4:88097141-88097160 | MS.gene37311:CDS | 65.0% | |
| GGCTCATGCCTGGGGCTTGG+GGG | + | chr4.4:88097142-88097161 | MS.gene37311:CDS | 70.0% | |
| TTGAGGGTCCCCCAAGCCCC+AGG | - | chr4.4:88097153-88097172 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 88094223 | 88097243 | 88094223 | ID=MS.gene37311 |
| chr4.4 | mRNA | 88094223 | 88097243 | 88094223 | ID=MS.gene37311.t1;Parent=MS.gene37311 |
| chr4.4 | exon | 88094223 | 88094259 | 88094223 | ID=MS.gene37311.t1.exon1;Parent=MS.gene37311.t1 |
| chr4.4 | CDS | 88094223 | 88094259 | 88094223 | ID=cds.MS.gene37311.t1;Parent=MS.gene37311.t1 |
| chr4.4 | exon | 88094562 | 88094679 | 88094562 | ID=MS.gene37311.t1.exon2;Parent=MS.gene37311.t1 |
| chr4.4 | CDS | 88094562 | 88094679 | 88094562 | ID=cds.MS.gene37311.t1;Parent=MS.gene37311.t1 |
| chr4.4 | exon | 88095213 | 88095249 | 88095213 | ID=MS.gene37311.t1.exon3;Parent=MS.gene37311.t1 |
| chr4.4 | CDS | 88095213 | 88095249 | 88095213 | ID=cds.MS.gene37311.t1;Parent=MS.gene37311.t1 |
| chr4.4 | exon | 88095491 | 88095560 | 88095491 | ID=MS.gene37311.t1.exon4;Parent=MS.gene37311.t1 |
| chr4.4 | CDS | 88095491 | 88095560 | 88095491 | ID=cds.MS.gene37311.t1;Parent=MS.gene37311.t1 |
| chr4.4 | exon | 88095688 | 88095792 | 88095688 | ID=MS.gene37311.t1.exon5;Parent=MS.gene37311.t1 |
| chr4.4 | CDS | 88095688 | 88095792 | 88095688 | ID=cds.MS.gene37311.t1;Parent=MS.gene37311.t1 |
| chr4.4 | exon | 88096005 | 88096155 | 88096005 | ID=MS.gene37311.t1.exon6;Parent=MS.gene37311.t1 |
| chr4.4 | CDS | 88096005 | 88096155 | 88096005 | ID=cds.MS.gene37311.t1;Parent=MS.gene37311.t1 |
| chr4.4 | exon | 88096316 | 88096398 | 88096316 | ID=MS.gene37311.t1.exon7;Parent=MS.gene37311.t1 |
| chr4.4 | CDS | 88096316 | 88096398 | 88096316 | ID=cds.MS.gene37311.t1;Parent=MS.gene37311.t1 |
| chr4.4 | exon | 88096670 | 88096763 | 88096670 | ID=MS.gene37311.t1.exon8;Parent=MS.gene37311.t1 |
| chr4.4 | CDS | 88096670 | 88096763 | 88096670 | ID=cds.MS.gene37311.t1;Parent=MS.gene37311.t1 |
| chr4.4 | exon | 88097090 | 88097243 | 88097090 | ID=MS.gene37311.t1.exon9;Parent=MS.gene37311.t1 |
| chr4.4 | CDS | 88097090 | 88097243 | 88097090 | ID=cds.MS.gene37311.t1;Parent=MS.gene37311.t1 |
| Gene Sequence |
| Protein sequence |
