AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene37311


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene37311.t1 MTR_4g011320 97.518 282 5 1 1 282 1 280 0.0 565
MS.gene37311.t1 MTR_2g103140 83.077 260 41 2 1 260 1 257 2.77e-146 410
MS.gene37311.t1 MTR_2g054780 65.844 243 83 0 15 257 10 252 9.62e-119 341
MS.gene37311.t1 MTR_3g107630 67.797 236 76 0 22 257 19 254 1.30e-116 335
MS.gene37311.t1 MTR_2g054780 63.786 243 81 1 15 257 10 245 5.95e-112 323
MS.gene37311.t1 MTR_4g132890 30.088 226 131 8 37 253 4 211 1.83e-19 84.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene37311.t1 AT1G52700 73.684 247 63 1 11 257 9 253 2.64e-130 370
MS.gene37311.t1 AT1G52700 73.684 247 63 1 11 257 9 253 2.64e-130 370
MS.gene37311.t1 AT1G52700 73.469 245 63 1 13 257 2 244 6.60e-129 366
MS.gene37311.t1 AT3G15650 66.667 276 69 2 1 257 1 272 2.48e-126 361
MS.gene37311.t1 AT3G15650 71.595 257 69 1 1 257 1 253 8.82e-123 351
MS.gene37311.t1 AT3G15650 69.962 263 73 1 1 257 1 263 1.45e-121 348
MS.gene37311.t1 AT5G20060 64.257 249 88 1 9 257 5 252 2.80e-120 345
MS.gene37311.t1 AT5G20060 64.257 249 88 1 9 257 5 252 2.80e-120 345
MS.gene37311.t1 AT5G20060 64.257 249 88 1 9 257 5 252 2.80e-120 345
MS.gene37311.t1 AT5G20060 64.257 249 88 1 9 257 5 252 2.80e-120 345
MS.gene37311.t1 AT1G52700 73.134 201 54 0 57 257 1 201 3.19e-105 305
MS.gene37311.t1 AT1G52700 75.661 189 44 1 11 199 9 195 1.51e-100 293
MS.gene37311.t1 AT1G52700 75.661 189 44 1 11 199 9 195 1.51e-100 293
MS.gene37311.t1 AT1G51300 39.924 263 141 3 6 257 8 264 6.44e-59 189
MS.gene37311.t1 AT1G51300 41.667 216 118 2 16 229 27 236 6.67e-54 176
MS.gene37311.t1 AT1G52695 42.857 210 113 2 14 222 3 206 4.01e-52 170
MS.gene37311.t1 AT1G51300 43.312 157 81 2 16 170 16 166 7.54e-41 140
MS.gene37311.t1 AT1G47786 46.296 162 75 4 16 173 33 186 2.56e-37 130
MS.gene37311.t1 AT1G52470 37.383 214 116 5 22 235 13 208 7.58e-37 131
MS.gene37311.t1 AT1G52460 38.095 231 116 7 29 255 13 220 1.34e-35 127
MS.gene37311.t1 AT1G52470 39.326 178 90 5 22 199 13 172 2.99e-32 117
MS.gene37311.t1 AT1G52470 39.326 178 90 5 22 199 13 172 3.17e-32 117
MS.gene37311.t1 AT1G52440 34.135 208 84 4 29 234 17 173 9.26e-27 103
MS.gene37311.t1 AT1G47780 52.727 110 49 1 64 173 23 129 5.37e-26 99.8
MS.gene37311.t1 AT4G22300 31.050 219 124 7 40 249 51 251 9.71e-22 92.0
MS.gene37311.t1 AT4G22305 31.507 219 123 8 40 249 6 206 1.00e-20 88.6

Find 79 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGCTCATGCCTGGGGCTT+GGG 0.096496 4.4:+88097140 MS.gene37311:CDS
TGGCTCATGCCTGGGGCTTG+GGG 0.138001 4.4:+88097141 MS.gene37311:CDS
CTTGGCTCATGCCTGGGGCT+TGG 0.151372 4.4:+88097139 MS.gene37311:CDS
CAATTGGCTTGGCTCATGCC+TGG 0.224859 4.4:+88097132 MS.gene37311:CDS
CTCAACTTAAGAGCAGTTAT+TGG 0.234690 4.4:+88096106 MS.gene37311:CDS
AGAAGAACTAATTTGGAGTT+TGG 0.266947 4.4:+88094576 MS.gene37311:CDS
GTTATATGATGCAGATAAAA+TGG 0.282666 4.4:+88095477 MS.gene37311:intron
GGACTAAGTGGCTGGCTTCC+AGG 0.288410 4.4:+88096127 MS.gene37311:CDS
TATCAAATGGGGTCTGGTTC+TGG 0.310234 4.4:+88094238 MS.gene37311:CDS
AATTGGCTTGGCTCATGCCT+GGG 0.311627 4.4:+88097133 MS.gene37311:CDS
ACAATAATCAGGGTTTGATA+TGG 0.314213 4.4:+88095677 MS.gene37311:intron
AACTGCTAGAAGAACTAATT+TGG 0.328772 4.4:+88094569 MS.gene37311:CDS
CTGCATGGTCTTGGAGATAA+TGG 0.359696 4.4:+88094651 MS.gene37311:CDS
GAACCATGCATGTTATCAAA+TGG 0.366787 4.4:+88094225 MS.gene37311:CDS
TGGGATTGGAGGCTTCAGTA+TGG 0.372915 4.4:+88096012 MS.gene37311:CDS
GATGTAGTCCTCTACAAATA+TGG 0.381501 4.4:+88096675 MS.gene37311:CDS
CAGGCATGAGCCAAGCCAAT+TGG 0.382122 4.4:-88097131 None:intergenic
ATAGTCTGGCTGCATGGTCT+TGG 0.385531 4.4:+88094642 MS.gene37311:CDS
CAGATGATGGTCCAGATGAT+TGG 0.393245 4.4:+88095709 MS.gene37311:CDS
AACCATGCATGTTATCAAAT+GGG 0.399917 4.4:+88094226 MS.gene37311:CDS
TATTGTGGTATAGTGAAAGT+TGG 0.404396 4.4:+88095992 MS.gene37311:intron
GGCTCATGCCTGGGGCTTGG+GGG 0.436395 4.4:+88097142 MS.gene37311:CDS
GCTCAAACCTTGTGTTCAGC+AGG 0.437434 4.4:+88096708 MS.gene37311:CDS
ATTGTGGTATAGTGAAAGTT+GGG 0.439268 4.4:+88095993 MS.gene37311:intron
CAATAATCAGGGTTTGATAT+GGG 0.441882 4.4:+88095678 MS.gene37311:intron
ACTTGATGCCATATTATTTG+AGG 0.443726 4.4:-88097167 None:intergenic
CTTGATGCCATATTATTTGA+GGG 0.445143 4.4:-88097166 None:intergenic
TCTAAACCCTCCCAATCATC+TGG 0.452958 4.4:-88095720 None:intergenic
ACAGGTCGGGTAGGAGCAGT+TGG 0.454599 4.4:-88095506 None:intergenic
TATAACATTCAAATCCTATG+AGG 0.464278 4.4:+88096740 MS.gene37311:CDS
AGATGATGGTCCAGATGATT+GGG 0.466419 4.4:+88095710 MS.gene37311:CDS
AACATCAAGCAACTATAGTC+TGG 0.471029 4.4:+88094628 MS.gene37311:CDS
GCCATGGGAAGGTATGGAAA+TGG 0.473050 4.4:+88096070 MS.gene37311:CDS
TGCTCTTAAGTTGAGACTGC+AGG 0.479567 4.4:-88096098 None:intergenic
GGGATTGGAGGCTTCAGTAT+GGG 0.484847 4.4:+88096013 MS.gene37311:CDS
ATTGTTGTATACCTTGATCC+TGG 0.487269 4.4:-88096145 None:intergenic
TTGGAAGTGGAAGTGATTCA+AGG 0.493512 4.4:-88095225 None:intergenic
GCATGTTATCAAATGGGGTC+TGG 0.494637 4.4:+88094232 MS.gene37311:CDS
GCTGAAGTCTCCAATTGGCT+TGG 0.496475 4.4:+88097121 MS.gene37311:CDS
ATAGTGAAAGTTGGGATTGG+AGG 0.499249 4.4:+88096001 MS.gene37311:intron
TACAAACTTACATTTGGAAG+TGG 0.499274 4.4:-88095238 None:intergenic
ATTGGCTTGGCTCATGCCTG+GGG 0.502183 4.4:+88097134 MS.gene37311:CDS
AGATGGCTGAAGTCTCCAAT+TGG 0.504814 4.4:+88097116 MS.gene37311:CDS
GGTATAGTGAAAGTTGGGAT+TGG 0.506683 4.4:+88095998 MS.gene37311:intron
GCCTTGAAAGTACCATCAGC+TGG 0.508974 4.4:-88095783 None:intergenic
CAGTTATTGGACTAAGTGGC+TGG 0.511811 4.4:+88096119 MS.gene37311:CDS
ACCCGACCTGTAGCTATACT+TGG 0.523563 4.4:+88095518 MS.gene37311:CDS
GAGACTTCAGCCATCTCTCT+AGG 0.530300 4.4:-88097109 None:intergenic
ACACATGTAGTGAGACCTAA+AGG 0.532303 4.4:+88094603 MS.gene37311:CDS
ACCAAGTATAGCTACAGGTC+GGG 0.532936 4.4:-88095519 None:intergenic
CTCAAACCTTGTGTTCAGCA+GGG 0.534728 4.4:+88096709 MS.gene37311:CDS
GTGGCTGGCTTCCAGGATCA+AGG 0.539805 4.4:+88096134 MS.gene37311:CDS
GTCTTGGAGATAATGGTTTG+AGG 0.543260 4.4:+88094658 MS.gene37311:CDS
AGAGCAGTTATTGGACTAAG+TGG 0.552676 4.4:+88096115 MS.gene37311:CDS
ATAACATTCAAATCCTATGA+GGG 0.562724 4.4:+88096741 MS.gene37311:CDS
AAGCCACCAAGTATAGCTAC+AGG 0.562898 4.4:-88095524 None:intergenic
CAGGTCGGGTAGGAGCAGTT+GGG 0.563753 4.4:-88095505 None:intergenic
GCTCTTAAGTTGAGACTGCA+GGG 0.570121 4.4:-88096097 None:intergenic
CGACCTGTAGCTATACTTGG+TGG 0.573380 4.4:+88095521 MS.gene37311:CDS
GCCATTTCCATACCTTCCCA+TGG 0.577058 4.4:-88096071 None:intergenic
ATGGGAGAACTATCAGATGA+TGG 0.578285 4.4:+88095696 MS.gene37311:CDS
TTGAAACCCTGCTGAACACA+AGG 0.578854 4.4:-88096715 None:intergenic
GCAACTATAGTCTGGCTGCA+TGG 0.583738 4.4:+88094636 MS.gene37311:CDS
ACCCCATTTGATAACATGCA+TGG 0.589572 4.4:-88094228 None:intergenic
ACTTCTCTCCATATTTGTAG+AGG 0.592373 4.4:-88096683 None:intergenic
AATTGTCACATGAAGCAAGA+AGG 0.595405 4.4:+88096336 MS.gene37311:CDS
TTATACAGTTCCTAGAGAGA+TGG 0.595540 4.4:+88097099 MS.gene37311:CDS
ATAGTGACATACTAATTCCA+TGG 0.603581 4.4:-88096388 None:intergenic
CACCAAGTATAGCTACAGGT+CGG 0.615230 4.4:-88095520 None:intergenic
TTAAGTTGAGACTGCAGGGG+AGG 0.616117 4.4:-88096093 None:intergenic
TTGTCAACTGAGCCAGCTGA+TGG 0.618407 4.4:+88095771 MS.gene37311:CDS
AGTATAGCTACAGGTCGGGT+AGG 0.625069 4.4:-88095515 None:intergenic
TGATGGTCCAGATGATTGGG+AGG 0.628482 4.4:+88095713 MS.gene37311:CDS
ACCATGCATGTTATCAAATG+GGG 0.644999 4.4:+88094227 MS.gene37311:CDS
GATGGTCCAGATGATTGGGA+GGG 0.653067 4.4:+88095714 MS.gene37311:CDS
ATTTGCAATATGTGCTGCTG+AGG 0.655308 4.4:-88095745 None:intergenic
GTCATGTTGTAGAAGACATG+CGG 0.655778 4.4:+88097188 MS.gene37311:CDS
TAACATTCAAATCCTATGAG+GGG 0.669236 4.4:+88096742 MS.gene37311:CDS
CTCTTAAGTTGAGACTGCAG+GGG 0.679564 4.4:-88096096 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATAATTTTTTTAAAAAA+AGG - chr4.4:88096772-88096791 None:intergenic 0.0%
!!! AAAAGTTGTTATTTTTTTAT+AGG + chr4.4:88094870-88094889 MS.gene37311:intron 10.0%
!!! AAATCTTTATATTTTTTATG+AGG - chr4.4:88095829-88095848 None:intergenic 10.0%
!!! AATCTTTATATTTTTTATGA+GGG - chr4.4:88095828-88095847 None:intergenic 10.0%
!! AAAAAAAGTAGTAGTTAATT+TGG - chr4.4:88094783-88094802 None:intergenic 15.0%
!! CATAATAAAAAATTTAAGCT+TGG + chr4.4:88095179-88095198 MS.gene37311:intron 15.0%
!! GTATACAACAATATTATTTA+GGG + chr4.4:88096156-88096175 MS.gene37311:intron 15.0%
!! TTGTTAAATAGCAAAATATA+AGG - chr4.4:88095661-88095680 None:intergenic 15.0%
!!! ATTTGGTTTTTTATTTAAGT+AGG + chr4.4:88096428-88096447 MS.gene37311:intron 15.0%
!!! TAAAAATGAATTTTCAAGAA+AGG - chr4.4:88094299-88094318 None:intergenic 15.0%
!! AAAATCTTATAGAAAACTAG+AGG - chr4.4:88095577-88095596 None:intergenic 20.0%
!! AAATCTTATAGAAAACTAGA+GGG - chr4.4:88095576-88095595 None:intergenic 20.0%
!! AGATAGTAAATTATATCACA+AGG + chr4.4:88094755-88094774 MS.gene37311:intron 20.0%
!! AGTACACATTATTAAATCTT+TGG + chr4.4:88096224-88096243 MS.gene37311:intron 20.0%
!! ATCTAATTGTATTGAAAAGA+TGG - chr4.4:88094692-88094711 None:intergenic 20.0%
!! CAACAAAAAAAAATTATGCA+TGG - chr4.4:88094326-88094345 None:intergenic 20.0%
!! GATAGTAAATTATATCACAA+GGG + chr4.4:88094756-88094775 MS.gene37311:intron 20.0%
!! GGTATACAACAATATTATTT+AGG + chr4.4:88096155-88096174 MS.gene37311:intron 20.0%
!! TCAACTATGAAATAATAAAG+CGG + chr4.4:88096809-88096828 MS.gene37311:intron 20.0%
!!! ACTTGACATGAATTTTTTTT+TGG + chr4.4:88094975-88094994 MS.gene37311:intron 20.0%
!!! AGTTGTTATTTTTTTATAGG+TGG + chr4.4:88094873-88094892 MS.gene37311:intron 20.0%
!!! ATAGTTGATATTATAAACCA+TGG - chr4.4:88094516-88094535 None:intergenic 20.0%
!!! ATATCTAAAATTCATTTGTC+AGG + chr4.4:88096648-88096667 MS.gene37311:intron 20.0%
!!! CTAAAACATCATTTTTATTG+TGG + chr4.4:88095977-88095996 MS.gene37311:intron 20.0%
!!! TTGCTATTTAACAATAATCA+GGG + chr4.4:88095667-88095686 MS.gene37311:intron 20.0%
!!! TTTGCTATTTAACAATAATC+AGG + chr4.4:88095666-88095685 MS.gene37311:intron 20.0%
!!! TTTTTATTTAAGTAGGATGT+TGG + chr4.4:88096435-88096454 MS.gene37311:intron 20.0%
! AAAGAAAGGTAATGTAATCA+AGG - chr4.4:88094492-88094511 None:intergenic 25.0%
! AAATACTATAGAGCTATGTA+CGG - chr4.4:88095418-88095437 None:intergenic 25.0%
! AAGTAGAAACTTAAAGCAAT+CGG + chr4.4:88096936-88096955 MS.gene37311:intron 25.0%
! ACATCTTAATATGTGACATT+TGG + chr4.4:88096411-88096430 MS.gene37311:intron 25.0%
! AGAAAAACAAAGTTATCATG+TGG - chr4.4:88094942-88094961 None:intergenic 25.0%
! ATAACATTCAAATCCTATGA+GGG + chr4.4:88096741-88096760 MS.gene37311:CDS 25.0%
! CATTTGTATCAATGTTATGT+CGG - chr4.4:88096535-88096554 None:intergenic 25.0%
! GTTATATGATGCAGATAAAA+TGG + chr4.4:88095477-88095496 MS.gene37311:intron 25.0%
! TACACAATTCTGATTTAGTA+AGG - chr4.4:88095603-88095622 None:intergenic 25.0%
! TATAACATTCAAATCCTATG+AGG + chr4.4:88096740-88096759 MS.gene37311:CDS 25.0%
! TCAAATAGAATCTCAATAGA+AGG - chr4.4:88094834-88094853 None:intergenic 25.0%
! TGAGAATACAAACTTACATT+TGG - chr4.4:88095247-88095266 None:intergenic 25.0%
! TTATAAACCATGGTAAAGAA+AGG - chr4.4:88094506-88094525 None:intergenic 25.0%
! TTTGCAATTGATGTTAATGT+AGG + chr4.4:88096294-88096313 MS.gene37311:intron 25.0%
!! CTATTTGAGATAAATTCTGT+TGG + chr4.4:88094846-88094865 MS.gene37311:intron 25.0%
!! TTTATCATCTAGTTTAATCG+TGG - chr4.4:88096900-88096919 None:intergenic 25.0%
!! TTTTACAACTATATACTCGA+AGG - chr4.4:88096196-88096215 None:intergenic 25.0%
!!! AGCAATTGTTTTTCACTTTT+TGG + chr4.4:88097050-88097069 MS.gene37311:intron 25.0%
!!! TATGCTGTATGTTTTTAGTA+TGG + chr4.4:88094802-88094821 MS.gene37311:intron 25.0%
AAAGGAAAATTTCTTGCAAG+GGG - chr4.4:88094281-88094300 None:intergenic 30.0%
AACCATGCATGTTATCAAAT+GGG + chr4.4:88094226-88094245 MS.gene37311:CDS 30.0%
AACTGCTAGAAGAACTAATT+TGG + chr4.4:88094569-88094588 MS.gene37311:CDS 30.0%
AATCTTTGGTTGTTTACATG+TGG + chr4.4:88096238-88096257 MS.gene37311:intron 30.0%
ACAAAAATTACCATTGAGTC+AGG + chr4.4:88095067-88095086 MS.gene37311:intron 30.0%
ACAATAATCAGGGTTTGATA+TGG + chr4.4:88095677-88095696 MS.gene37311:intron 30.0%
ACAGACAAACACATAGATAT+TGG - chr4.4:88095393-88095412 None:intergenic 30.0%
ACTTGATGCCATATTATTTG+AGG - chr4.4:88097170-88097189 None:intergenic 30.0%
AGAAAGGAAAATTTCTTGCA+AGG - chr4.4:88094283-88094302 None:intergenic 30.0%
ATACTTTATATGCCCTTTGA+AGG + chr4.4:88094540-88094559 MS.gene37311:intron 30.0%
ATAGTGACATACTAATTCCA+TGG - chr4.4:88096391-88096410 None:intergenic 30.0%
ATTAAAATGACCTGACTCAA+TGG - chr4.4:88095080-88095099 None:intergenic 30.0%
ATTGTGGTATAGTGAAAGTT+GGG + chr4.4:88095993-88096012 MS.gene37311:intron 30.0%
CAATAATCAGGGTTTGATAT+GGG + chr4.4:88095678-88095697 MS.gene37311:intron 30.0%
CTTGATGCCATATTATTTGA+GGG - chr4.4:88097169-88097188 None:intergenic 30.0%
GAAAGGAAAATTTCTTGCAA+GGG - chr4.4:88094282-88094301 None:intergenic 30.0%
GAAGATAACAAACATCCATT+AGG - chr4.4:88095135-88095154 None:intergenic 30.0%
GATCAAATCAGTGAAATCTT+TGG + chr4.4:88096853-88096872 MS.gene37311:intron 30.0%
TAACATTCAAATCCTATGAG+GGG + chr4.4:88096742-88096761 MS.gene37311:CDS 30.0%
TACAAACTTACATTTGGAAG+TGG - chr4.4:88095241-88095260 None:intergenic 30.0%
TACATTACCTTTCTTTACCA+TGG + chr4.4:88094496-88094515 MS.gene37311:intron 30.0%
TACTTTATATGCCCTTTGAA+GGG + chr4.4:88094541-88094560 MS.gene37311:intron 30.0%
TATAGGTGGAAAGCTTAATT+TGG + chr4.4:88094887-88094906 MS.gene37311:intron 30.0%
TATTGTGGTATAGTGAAAGT+TGG + chr4.4:88095992-88096011 MS.gene37311:intron 30.0%
TGACAAATTGATCTGATCAT+CGG + chr4.4:88096998-88097017 MS.gene37311:intron 30.0%
TTACTAAGATTCTGGACTAA+GGG + chr4.4:88094915-88094934 MS.gene37311:intron 30.0%
! AGAAGAACTAATTTGGAGTT+TGG + chr4.4:88094576-88094595 MS.gene37311:CDS 30.0%
! GCAAATATGTGTTTTCCTAA+TGG + chr4.4:88095117-88095136 MS.gene37311:intron 30.0%
!! AGTCAGGTCATTTTAATCTA+TGG + chr4.4:88095083-88095102 MS.gene37311:intron 30.0%
!!! TTTGGCTTGTTATTTTGTGT+AGG + chr4.4:88097068-88097087 MS.gene37311:intron 30.0%
AAAAACAAGGAAGGTAGAGA+AGG + chr4.4:88097214-88097233 MS.gene37311:CDS 35.0%
AACATCAAGCAACTATAGTC+TGG + chr4.4:88094628-88094647 MS.gene37311:CDS 35.0%
AATTGTCACATGAAGCAAGA+AGG + chr4.4:88096336-88096355 MS.gene37311:CDS 35.0%
ACCATGCATGTTATCAAATG+GGG + chr4.4:88094227-88094246 MS.gene37311:CDS 35.0%
ACTTCTCTCCATATTTGTAG+AGG - chr4.4:88096686-88096705 None:intergenic 35.0%
ATTGTTGTATACCTTGATCC+TGG - chr4.4:88096148-88096167 None:intergenic 35.0%
CAAAGATTGTGACTATAGCT+TGG - chr4.4:88094371-88094390 None:intergenic 35.0%
CATTTGAGCATTCAATGCAA+CGG - chr4.4:88096577-88096596 None:intergenic 35.0%
CTCAACTTAAGAGCAGTTAT+TGG + chr4.4:88096106-88096125 MS.gene37311:CDS 35.0%
GAACCATGCATGTTATCAAA+TGG + chr4.4:88094225-88094244 MS.gene37311:CDS 35.0%
GATCAGATCAATTTGTCAGT+TGG - chr4.4:88096996-88097015 None:intergenic 35.0%
GATGTAGTCCTCTACAAATA+TGG + chr4.4:88096675-88096694 MS.gene37311:CDS 35.0%
GTTACTAAGATTCTGGACTA+AGG + chr4.4:88094914-88094933 MS.gene37311:intron 35.0%
TCAGTGAAATCTTTGGATCA+TGG + chr4.4:88096860-88096879 MS.gene37311:intron 35.0%
TCTCAAGTATGGATGGTAAA+AGG - chr4.4:88095270-88095289 None:intergenic 35.0%
TCTTTGGATCATGGTTCAAT+TGG + chr4.4:88096869-88096888 MS.gene37311:intron 35.0%
TGGAAGAGTTACTAAGATTC+TGG + chr4.4:88094907-88094926 MS.gene37311:intron 35.0%
TTATACAGTTCCTAGAGAGA+TGG + chr4.4:88097099-88097118 MS.gene37311:CDS 35.0%
! AATTGATCTGATCATCGGTT+TGG + chr4.4:88097003-88097022 MS.gene37311:intron 35.0%
! GTTGCTTGATGTTTTCCTTT+AGG - chr4.4:88094621-88094640 None:intergenic 35.0%
!!! CTTGTTATTTTGTGTAGGCT+TGG + chr4.4:88097073-88097092 MS.gene37311:intron 35.0%
AAGGTTTGTGACTGTGATTG+TGG - chr4.4:88094473-88094492 None:intergenic 40.0%
ACACATGTAGTGAGACCTAA+AGG + chr4.4:88094603-88094622 MS.gene37311:CDS 40.0%
AGACATGCGGAACAAAAACA+AGG + chr4.4:88097201-88097220 MS.gene37311:CDS 40.0%
AGAGCAGTTATTGGACTAAG+TGG + chr4.4:88096115-88096134 MS.gene37311:CDS 40.0%
ATAGTGAAAGTTGGGATTGG+AGG + chr4.4:88096001-88096020 MS.gene37311:intron 40.0%
ATGCGGAACAAAAACAAGGA+AGG + chr4.4:88097205-88097224 MS.gene37311:CDS 40.0%
ATGGGAGAACTATCAGATGA+TGG + chr4.4:88095696-88095715 MS.gene37311:CDS 40.0%
ATTCCATGGCTCAGAAAAAC+TGG - chr4.4:88096377-88096396 None:intergenic 40.0%
CAATTGATGTAGCCGAAATG+TGG + chr4.4:88094417-88094436 MS.gene37311:intron 40.0%
CCATCCATACTTGAGATTGA+AGG + chr4.4:88095274-88095293 MS.gene37311:intron 40.0%
CCTTCAATCTCAAGTATGGA+TGG - chr4.4:88095277-88095296 None:intergenic 40.0%
CTGATCAGAATGATGACATC+CGG + chr4.4:88095900-88095919 MS.gene37311:intron 40.0%
GGTATAGTGAAAGTTGGGAT+TGG + chr4.4:88095998-88096017 MS.gene37311:intron 40.0%
GTCATGTTGTAGAAGACATG+CGG + chr4.4:88097188-88097207 MS.gene37311:CDS 40.0%
TAACGTCTGTGACCACATTT+CGG - chr4.4:88094432-88094451 None:intergenic 40.0%
TTGGAAGTGGAAGTGATTCA+AGG - chr4.4:88095228-88095247 None:intergenic 40.0%
TTGTGACTATAGCTTGGCTA+AGG - chr4.4:88094365-88094384 None:intergenic 40.0%
! ACCCCATTTGATAACATGCA+TGG - chr4.4:88094231-88094250 None:intergenic 40.0%
! AGATGATGGTCCAGATGATT+GGG + chr4.4:88095710-88095729 MS.gene37311:CDS 40.0%
! ATTTGCAATATGTGCTGCTG+AGG - chr4.4:88095748-88095767 None:intergenic 40.0%
! GGAGATAATGGTTTGAGGTA+TGG + chr4.4:88094663-88094682 MS.gene37311:intron 40.0%
! GTCAGTTGGTTCAAGTCTAA+TGG - chr4.4:88096982-88097001 None:intergenic 40.0%
! GTCTTGGAGATAATGGTTTG+AGG + chr4.4:88094658-88094677 MS.gene37311:CDS 40.0%
! TGTGTATTCAGAAAGCGTAG+TGG + chr4.4:88096607-88096626 MS.gene37311:intron 40.0%
! TTACCAGTTTTTCTGAGCCA+TGG + chr4.4:88096371-88096390 MS.gene37311:CDS 40.0%
!!! TCTGCAACTTGTTTTGCCAT+GGG + chr4.4:88096055-88096074 MS.gene37311:CDS 40.0%
!!! TTCTGCAACTTGTTTTGCCA+TGG + chr4.4:88096054-88096073 MS.gene37311:CDS 40.0%
AAAAAAGGCTCACCCCTCAT+AGG - chr4.4:88096757-88096776 None:intergenic 45.0%
AAGCCACCAAGTATAGCTAC+AGG - chr4.4:88095527-88095546 None:intergenic 45.0%
AATCACGAGAACAATCGCAC+CGG - chr4.4:88095922-88095941 None:intergenic 45.0%
ACCAAGTATAGCTACAGGTC+GGG - chr4.4:88095522-88095541 None:intergenic 45.0%
AGATGGCTGAAGTCTCCAAT+TGG + chr4.4:88097116-88097135 MS.gene37311:CDS 45.0%
CACCAAGTATAGCTACAGGT+CGG - chr4.4:88095523-88095542 None:intergenic 45.0%
CACGCCTTCAATCTCAAGTA+TGG - chr4.4:88095281-88095300 None:intergenic 45.0%
CAGTTATTGGACTAAGTGGC+TGG + chr4.4:88096119-88096138 MS.gene37311:CDS 45.0%
CGGATGTCATCATTCTGATC+AGG - chr4.4:88095902-88095921 None:intergenic 45.0%
CTCAAACCTTGTGTTCAGCA+GGG + chr4.4:88096709-88096728 MS.gene37311:CDS 45.0%
GCATGTTATCAAATGGGGTC+TGG + chr4.4:88094232-88094251 MS.gene37311:CDS 45.0%
TCTAAACCCTCCCAATCATC+TGG - chr4.4:88095723-88095742 None:intergenic 45.0%
TGGGGGACCCTCAAATAATA+TGG + chr4.4:88097159-88097178 MS.gene37311:CDS 45.0%
TTGAAACCCTGCTGAACACA+AGG - chr4.4:88096718-88096737 None:intergenic 45.0%
! CAGATGATGGTCCAGATGAT+TGG + chr4.4:88095709-88095728 MS.gene37311:CDS 45.0%
! CTGCATGGTCTTGGAGATAA+TGG + chr4.4:88094651-88094670 MS.gene37311:CDS 45.0%
! TATATGCCCTTTGAAGGGAG+TGG + chr4.4:88094546-88094565 MS.gene37311:intron 45.0%
! TATCAAATGGGGTCTGGTTC+TGG + chr4.4:88094238-88094257 MS.gene37311:CDS 45.0%
! TGTTTTGCCATGGGAAGGTA+TGG + chr4.4:88096064-88096083 MS.gene37311:CDS 45.0%
!! CTCTTAAGTTGAGACTGCAG+GGG - chr4.4:88096099-88096118 None:intergenic 45.0%
!! GCTCTTAAGTTGAGACTGCA+GGG - chr4.4:88096100-88096119 None:intergenic 45.0%
!! GTTTGTTGTCCGACATGTGT+GGG + chr4.4:88096506-88096525 MS.gene37311:intron 45.0%
!! TGCTCTTAAGTTGAGACTGC+AGG - chr4.4:88096101-88096120 None:intergenic 45.0%
!! TGTTTGTTGTCCGACATGTG+TGG + chr4.4:88096505-88096524 MS.gene37311:intron 45.0%
!!! CAACTTGTTTTGCCATGGGA+AGG + chr4.4:88096059-88096078 MS.gene37311:CDS 45.0%
ACCCGACCTGTAGCTATACT+TGG + chr4.4:88095518-88095537 MS.gene37311:CDS 50.0%
AGCAGTTCCACTCCCTTCAA+AGG - chr4.4:88094556-88094575 None:intergenic 50.0%
AGTATAGCTACAGGTCGGGT+AGG - chr4.4:88095518-88095537 None:intergenic 50.0%
ATAGTCTGGCTGCATGGTCT+TGG + chr4.4:88094642-88094661 MS.gene37311:CDS 50.0%
CGACCTGTAGCTATACTTGG+TGG + chr4.4:88095521-88095540 MS.gene37311:CDS 50.0%
GAGACTTCAGCCATCTCTCT+AGG - chr4.4:88097112-88097131 None:intergenic 50.0%
GATGGTCCAGATGATTGGGA+GGG + chr4.4:88095714-88095733 MS.gene37311:CDS 50.0%
GCAACTATAGTCTGGCTGCA+TGG + chr4.4:88094636-88094655 MS.gene37311:CDS 50.0%
GCAGTTCCACTCCCTTCAAA+GGG - chr4.4:88094555-88094574 None:intergenic 50.0%
GCCAGCTGATGGTACTTTCA+AGG + chr4.4:88095782-88095801 MS.gene37311:intron 50.0%
GCCATTTCCATACCTTCCCA+TGG - chr4.4:88096074-88096093 None:intergenic 50.0%
GCTCAAACCTTGTGTTCAGC+AGG + chr4.4:88096708-88096727 MS.gene37311:CDS 50.0%
GCTGAAGTCTCCAATTGGCT+TGG + chr4.4:88097121-88097140 MS.gene37311:CDS 50.0%
GGGATTGGAGGCTTCAGTAT+GGG + chr4.4:88096013-88096032 MS.gene37311:CDS 50.0%
TGATGGTCCAGATGATTGGG+AGG + chr4.4:88095713-88095732 MS.gene37311:CDS 50.0%
TGGGATTGGAGGCTTCAGTA+TGG + chr4.4:88096012-88096031 MS.gene37311:CDS 50.0%
TGTGACTGTGATTGTGGTCG+CGG - chr4.4:88094467-88094486 None:intergenic 50.0%
TTGTCAACTGAGCCAGCTGA+TGG + chr4.4:88095771-88095790 MS.gene37311:CDS 50.0%
! GCCATGGGAAGGTATGGAAA+TGG + chr4.4:88096070-88096089 MS.gene37311:CDS 50.0%
!! AATTGGCTTGGCTCATGCCT+GGG + chr4.4:88097133-88097152 MS.gene37311:CDS 50.0%
!! GCCTTGAAAGTACCATCAGC+TGG - chr4.4:88095786-88095805 None:intergenic 50.0%
!! TTAAGTTGAGACTGCAGGGG+AGG - chr4.4:88096096-88096115 None:intergenic 50.0%
CAGGCATGAGCCAAGCCAAT+TGG - chr4.4:88097134-88097153 None:intergenic 55.0%
! TGTCGGTGTCCCACACATGT+CGG - chr4.4:88096518-88096537 None:intergenic 55.0%
!! ATTGGCTTGGCTCATGCCTG+GGG + chr4.4:88097134-88097153 MS.gene37311:CDS 55.0%
!! CAATTGGCTTGGCTCATGCC+TGG + chr4.4:88097132-88097151 MS.gene37311:CDS 55.0%
ACAGGTCGGGTAGGAGCAGT+TGG - chr4.4:88095509-88095528 None:intergenic 60.0%
CAGGTCGGGTAGGAGCAGTT+GGG - chr4.4:88095508-88095527 None:intergenic 60.0%
TTGGCTCATGCCTGGGGCTT+GGG + chr4.4:88097140-88097159 MS.gene37311:CDS 60.0%
!! GGACTAAGTGGCTGGCTTCC+AGG + chr4.4:88096127-88096146 MS.gene37311:CDS 60.0%
!! GTGGCTGGCTTCCAGGATCA+AGG + chr4.4:88096134-88096153 MS.gene37311:CDS 60.0%
CTTGGCTCATGCCTGGGGCT+TGG + chr4.4:88097139-88097158 MS.gene37311:CDS 65.0%
TGGCTCATGCCTGGGGCTTG+GGG + chr4.4:88097141-88097160 MS.gene37311:CDS 65.0%
GGCTCATGCCTGGGGCTTGG+GGG + chr4.4:88097142-88097161 MS.gene37311:CDS 70.0%
TTGAGGGTCCCCCAAGCCCC+AGG - chr4.4:88097153-88097172 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 88094223 88097243 88094223 ID=MS.gene37311
chr4.4 mRNA 88094223 88097243 88094223 ID=MS.gene37311.t1;Parent=MS.gene37311
chr4.4 exon 88094223 88094259 88094223 ID=MS.gene37311.t1.exon1;Parent=MS.gene37311.t1
chr4.4 CDS 88094223 88094259 88094223 ID=cds.MS.gene37311.t1;Parent=MS.gene37311.t1
chr4.4 exon 88094562 88094679 88094562 ID=MS.gene37311.t1.exon2;Parent=MS.gene37311.t1
chr4.4 CDS 88094562 88094679 88094562 ID=cds.MS.gene37311.t1;Parent=MS.gene37311.t1
chr4.4 exon 88095213 88095249 88095213 ID=MS.gene37311.t1.exon3;Parent=MS.gene37311.t1
chr4.4 CDS 88095213 88095249 88095213 ID=cds.MS.gene37311.t1;Parent=MS.gene37311.t1
chr4.4 exon 88095491 88095560 88095491 ID=MS.gene37311.t1.exon4;Parent=MS.gene37311.t1
chr4.4 CDS 88095491 88095560 88095491 ID=cds.MS.gene37311.t1;Parent=MS.gene37311.t1
chr4.4 exon 88095688 88095792 88095688 ID=MS.gene37311.t1.exon5;Parent=MS.gene37311.t1
chr4.4 CDS 88095688 88095792 88095688 ID=cds.MS.gene37311.t1;Parent=MS.gene37311.t1
chr4.4 exon 88096005 88096155 88096005 ID=MS.gene37311.t1.exon6;Parent=MS.gene37311.t1
chr4.4 CDS 88096005 88096155 88096005 ID=cds.MS.gene37311.t1;Parent=MS.gene37311.t1
chr4.4 exon 88096316 88096398 88096316 ID=MS.gene37311.t1.exon7;Parent=MS.gene37311.t1
chr4.4 CDS 88096316 88096398 88096316 ID=cds.MS.gene37311.t1;Parent=MS.gene37311.t1
chr4.4 exon 88096670 88096763 88096670 ID=MS.gene37311.t1.exon8;Parent=MS.gene37311.t1
chr4.4 CDS 88096670 88096763 88096670 ID=cds.MS.gene37311.t1;Parent=MS.gene37311.t1
chr4.4 exon 88097090 88097243 88097090 ID=MS.gene37311.t1.exon9;Parent=MS.gene37311.t1
chr4.4 CDS 88097090 88097243 88097090 ID=cds.MS.gene37311.t1;Parent=MS.gene37311.t1
Gene Sequence

>MS.gene37311

ATGAACCATGCATGTTATCAAATGGGGTCTGGTTCTGGTTAGTTTTTCTTCATTACCCCTTGCAAGAAATTTTCCTTTCTTGAAAATTCATTTTTACAATCCATGCATAATTTTTTTTTGTTGTCATCAATGATAAATTCCTTAGCCAAGCTATAGTCACAATCTTTGATACTGCGAAAAATTATATTCAAATACAATTGATGTAGCCGAAATGTGGTCACAGACGTTAAAAACATTGACGCCGCGACCACAATCACAGTCACAAACCTTGATTACATTACCTTTCTTTACCATGGTTTATAATATCAACTATCTTTATACTTTATATGCCCTTTGAAGGGAGTGGAACTGCTAGAAGAACTAATTTGGAGTTTGGAAAGACACATGTAGTGAGACCTAAAGGAAAACATCAAGCAACTATAGTCTGGCTGCATGGTCTTGGAGATAATGGTTTGAGGTATGGATACCATCTTTTCAATACAATTAGATTATATGTCTCATTTTTTTTATAACACTGTCGACATAGTAAGAAAGATAGTAAATTATATCACAAGGGTCCAAATTAACTACTACTTTTTTTATGCTGTATGTTTTTAGTATGGAGCTTTCCTTCTATTGAGATTCTATTTGAGATAAATTCTGTTGGAAAAAGTTGTTATTTTTTTATAGGTGGAAAGCTTAATTTGGAAGAGTTACTAAGATTCTGGACTAAGGGACCACATGATAACTTTGTTTTTCTACTAAATTGAGTAACTTGACATGAATTTTTTTTTGGTACAGTACTTGACATGACTTTTAAATTGACAGAAGAATATTTATATGAATAGCAAAATAATTAATAGTCACAAAAATTACCATTGAGTCAGGTCATTTTAATCTATGGATTTTTATCTAGCAAATATGTGTTTTCCTAATGGATGTTTGTTATCTTCTTTTATATTCTAATCTTAGACAAACATAATAAAAAATTTAAGCTTGGTTTTCTTGCAGTTCATATCAGCTCCTTGAATCACTTCCACTTCCAAATGTAAGTTTGTATTCTCACCTTTTACCATCCATACTTGAGATTGAAGGCGTGTCTCGTGTACAGTACATGTCAGTGTTCGATACGAAACAACATCAACACATGTGATTACATTCAATCATTTCAATTTTATCAAATTATTACCAATATCTATGTGTTTGTCTGTGTCCGTACATAGCTCTATAGTATTTCGATAAATTTATTCTCATGTACTTAACATATGATATGATGTTATATGATGCAGATAAAATGGATTTGCCCAACTGCTCCTACCCGACCTGTAGCTATACTTGGTGGCTTTTCTTGCACTGCATGTAATGTTAAATCCCTCTAGTTTTCTATAAGATTTTTTTCCTTACTAAATCAGAATTGTGTAACTATTAAATATGTACACATAAGTATATATTATAACCTTATATTTTGCTATTTAACAATAATCAGGGTTTGATATGGGAGAACTATCAGATGATGGTCCAGATGATTGGGAGGGTTTAGATGCCTCAGCAGCACATATTGCAAATTTGTTGTCAACTGAGCCAGCTGATGGTACTTTCAAGGCTAAATATATTTGTTCTTAACCCTCATAAAAAATATAAAGATTTCATTTATCTAATTCTAATTTTAAGCACATTCAATTTGATACTTGATCGTACCTGATCAGAATGATGACATCCGGTGCGATTGTTCTCGTGATTGATATTTTTCTAGATTCTTCTATTGATGAATTTCACTAAAACATCATTTTTATTGTGGTATAGTGAAAGTTGGGATTGGAGGCTTCAGTATGGGTGCTGCAACAGCTCTATATTCTGCAACTTGTTTTGCCATGGGAAGGTATGGAAATGGCCTCCCCTGCAGTCTCAACTTAAGAGCAGTTATTGGACTAAGTGGCTGGCTTCCAGGATCAAGGTATACAACAATATTATTTAGGGACGTTGTTCAAATACCTTCGAGTATATAGTTGTAAAATGATCATTAGTACACATTATTAAATCTTTGGTTGTTTACATGTGGTCACATACTAAACTCTAATGATTGACACTATGATTTGCAATTGATGTTAATGTAGGAGCTTAAAGAGCAAGATAGAATTGTCACATGAAGCAAGAAGGAGAGCTGCTTCATTACCAGTTTTTCTGAGCCATGGAATTAGTATGTCACTATACATCTTAATATGTGACATTTGGTTTTTTATTTAAGTAGGATGTTGGTTATAAGTTACATATTATTATAGCACTGACACTTCAAATTAAAGAAGTGTTTGTTGTCCGACATGTGTGGGACACCGACATAACATTGATACAAATGTTTATGTTCTGTTTCATCTCCGTTGCATTGAATGCTCAAATGATGATTTATTTGTGTATTCAGAAAGCGTAGTGGTAGTTATTTTTTAAGCTAATATCTAAAATTCATTTGTCAGGTGATGATGTAGTCCTCTACAAATATGGAGAGAAGTCAGCTCAAACCTTGTGTTCAGCAGGGTTTCAATATATAACATTCAAATCCTATGAGGGGTGAGCCTTTTTTTAAAAAAATTATAATTTTTTAGTAGAATTAACTCAACTATGAAATAATAAAGCGGTGTTTTAAAAATCATACTTGAGATCAAATCAGTGAAATCTTTGGATCATGGTTCAATTGGTTCAACCACGATTAAACTAGATGATAAATAAAAAACTAAAAAAAAAGTAGAAACTTAAAGCAATCGGTTGAAACAACTGTAGTTCAACCATTAGACTTGAACCAACTGACAAATTGATCTGATCATCGGTTTGGTCTAATTTTTAAAACATTAGTTAAAGCAATTGTTTTTCACTTTTTGGCTTGTTATTTTGTGTAGGCTTGGTCATTATACAGTTCCTAGAGAGATGGCTGAAGTCTCCAATTGGCTTGGCTCATGCCTGGGGCTTGGGGGACCCTCAAATAATATGGCATCAAGTCATGTTGTAGAAGACATGCGGAACAAAAACAAGGAAGGTAGAGAAGGACATTAA

Protein sequence

>MS.gene37311.t1

MNHACYQMGSGSGSGTARRTNLEFGKTHVVRPKGKHQATIVWLHGLGDNGLSSYQLLESLPLPNIKWICPTAPTRPVAILGGFSCTAWFDMGELSDDGPDDWEGLDASAAHIANLLSTEPADVKVGIGGFSMGAATALYSATCFAMGRYGNGLPCSLNLRAVIGLSGWLPGSRSLKSKIELSHEARRRAASLPVFLSHGISDDVVLYKYGEKSAQTLCSAGFQYITFKSYEGLGHYTVPREMAEVSNWLGSCLGLGGPSNNMASSHVVEDMRNKNKEGREGH