Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034040.t1 | XP_013454687.1 | 97.5 | 282 | 5 | 1 | 1 | 282 | 1 | 280 | 4.90E-158 | 567 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034040.t1 | P0CL95 | 30.6 | 245 | 132 | 8 | 30 | 253 | 10 | 237 | 6.5e-26 | 119.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034040.t1 | A0A072UHW3 | 97.5 | 282 | 5 | 1 | 1 | 282 | 1 | 280 | 3.5e-158 | 567.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene034040 | MS.gene038854 | PPI |
| MS.gene034040 | MS.gene37311 | PPI |
| MS.gene034040 | MS.gene83338 | PPI |
| MS.gene034040 | MS.gene067343 | PPI |
| MS.gene034040 | MS.gene86352 | PPI |
| MS.gene034040 | MS.gene89061 | PPI |
| MS.gene034040 | MS.gene026794 | PPI |
| MS.gene034040 | MS.gene067344 | PPI |
| MS.gene034040 | MS.gene79485 | PPI |
| MS.gene36243 | MS.gene034040 | PPI |
| MS.gene034040 | MS.gene034042 | PPI |
| MS.gene034040 | MS.gene034041 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034040.t1 | MTR_4g011320 | 97.518 | 282 | 5 | 1 | 1 | 282 | 1 | 280 | 0.0 | 565 |
| MS.gene034040.t1 | MTR_2g103140 | 83.077 | 260 | 41 | 2 | 1 | 260 | 1 | 257 | 2.77e-146 | 410 |
| MS.gene034040.t1 | MTR_2g054780 | 65.844 | 243 | 83 | 0 | 15 | 257 | 10 | 252 | 9.62e-119 | 341 |
| MS.gene034040.t1 | MTR_3g107630 | 67.797 | 236 | 76 | 0 | 22 | 257 | 19 | 254 | 1.30e-116 | 335 |
| MS.gene034040.t1 | MTR_2g054780 | 63.786 | 243 | 81 | 1 | 15 | 257 | 10 | 245 | 5.95e-112 | 323 |
| MS.gene034040.t1 | MTR_4g132890 | 30.088 | 226 | 131 | 8 | 37 | 253 | 4 | 211 | 1.83e-19 | 84.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034040.t1 | AT1G52700 | 73.684 | 247 | 63 | 1 | 11 | 257 | 9 | 253 | 2.64e-130 | 370 |
| MS.gene034040.t1 | AT1G52700 | 73.684 | 247 | 63 | 1 | 11 | 257 | 9 | 253 | 2.64e-130 | 370 |
| MS.gene034040.t1 | AT1G52700 | 73.469 | 245 | 63 | 1 | 13 | 257 | 2 | 244 | 6.60e-129 | 366 |
| MS.gene034040.t1 | AT3G15650 | 66.667 | 276 | 69 | 2 | 1 | 257 | 1 | 272 | 2.48e-126 | 361 |
| MS.gene034040.t1 | AT3G15650 | 71.595 | 257 | 69 | 1 | 1 | 257 | 1 | 253 | 8.82e-123 | 351 |
| MS.gene034040.t1 | AT3G15650 | 69.962 | 263 | 73 | 1 | 1 | 257 | 1 | 263 | 1.45e-121 | 348 |
| MS.gene034040.t1 | AT5G20060 | 64.257 | 249 | 88 | 1 | 9 | 257 | 5 | 252 | 2.80e-120 | 345 |
| MS.gene034040.t1 | AT5G20060 | 64.257 | 249 | 88 | 1 | 9 | 257 | 5 | 252 | 2.80e-120 | 345 |
| MS.gene034040.t1 | AT5G20060 | 64.257 | 249 | 88 | 1 | 9 | 257 | 5 | 252 | 2.80e-120 | 345 |
| MS.gene034040.t1 | AT5G20060 | 64.257 | 249 | 88 | 1 | 9 | 257 | 5 | 252 | 2.80e-120 | 345 |
| MS.gene034040.t1 | AT1G52700 | 73.134 | 201 | 54 | 0 | 57 | 257 | 1 | 201 | 3.19e-105 | 305 |
| MS.gene034040.t1 | AT1G52700 | 75.661 | 189 | 44 | 1 | 11 | 199 | 9 | 195 | 1.51e-100 | 293 |
| MS.gene034040.t1 | AT1G52700 | 75.661 | 189 | 44 | 1 | 11 | 199 | 9 | 195 | 1.51e-100 | 293 |
| MS.gene034040.t1 | AT1G51300 | 39.924 | 263 | 141 | 3 | 6 | 257 | 8 | 264 | 6.44e-59 | 189 |
| MS.gene034040.t1 | AT1G51300 | 41.667 | 216 | 118 | 2 | 16 | 229 | 27 | 236 | 6.67e-54 | 176 |
| MS.gene034040.t1 | AT1G52695 | 42.857 | 210 | 113 | 2 | 14 | 222 | 3 | 206 | 4.01e-52 | 170 |
| MS.gene034040.t1 | AT1G51300 | 43.312 | 157 | 81 | 2 | 16 | 170 | 16 | 166 | 7.54e-41 | 140 |
| MS.gene034040.t1 | AT1G47786 | 46.296 | 162 | 75 | 4 | 16 | 173 | 33 | 186 | 2.56e-37 | 130 |
| MS.gene034040.t1 | AT1G52470 | 37.383 | 214 | 116 | 5 | 22 | 235 | 13 | 208 | 7.58e-37 | 131 |
| MS.gene034040.t1 | AT1G52460 | 38.095 | 231 | 116 | 7 | 29 | 255 | 13 | 220 | 1.34e-35 | 127 |
| MS.gene034040.t1 | AT1G52470 | 39.326 | 178 | 90 | 5 | 22 | 199 | 13 | 172 | 2.99e-32 | 117 |
| MS.gene034040.t1 | AT1G52470 | 39.326 | 178 | 90 | 5 | 22 | 199 | 13 | 172 | 3.17e-32 | 117 |
| MS.gene034040.t1 | AT1G52440 | 34.135 | 208 | 84 | 4 | 29 | 234 | 17 | 173 | 9.26e-27 | 103 |
| MS.gene034040.t1 | AT1G47780 | 52.727 | 110 | 49 | 1 | 64 | 173 | 23 | 129 | 5.37e-26 | 99.8 |
| MS.gene034040.t1 | AT4G22300 | 31.050 | 219 | 124 | 7 | 40 | 249 | 51 | 251 | 9.71e-22 | 92.0 |
| MS.gene034040.t1 | AT4G22305 | 31.507 | 219 | 123 | 8 | 40 | 249 | 6 | 206 | 1.00e-20 | 88.6 |
Find 79 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGCTCATGCCTGGGGCTT+GGG | 0.096496 | 4.3:+85644303 | MS.gene034040:CDS |
| TGGCTCATGCCTGGGGCTTG+GGG | 0.138001 | 4.3:+85644304 | MS.gene034040:CDS |
| CTTGGCTCATGCCTGGGGCT+TGG | 0.151372 | 4.3:+85644302 | MS.gene034040:CDS |
| CAATTGGCTTGGCTCATGCC+TGG | 0.224859 | 4.3:+85644295 | MS.gene034040:CDS |
| CTCAACTTAAGAGCAGTTAT+TGG | 0.234690 | 4.3:+85643269 | MS.gene034040:CDS |
| AGAAGAACTAATTTGGAGTT+TGG | 0.266947 | 4.3:+85641739 | MS.gene034040:CDS |
| GTTATATGATGCAGATAAAA+TGG | 0.282666 | 4.3:+85642640 | MS.gene034040:intron |
| GGACTAAGTGGCTGGCTTCC+AGG | 0.288410 | 4.3:+85643290 | MS.gene034040:CDS |
| TATCAAATGGGGTCTGGTTC+TGG | 0.310234 | 4.3:+85641401 | MS.gene034040:CDS |
| AATTGGCTTGGCTCATGCCT+GGG | 0.311627 | 4.3:+85644296 | MS.gene034040:CDS |
| ACAATAATCAGGGTTTGATA+TGG | 0.314213 | 4.3:+85642840 | MS.gene034040:intron |
| AACTGCTAGAAGAACTAATT+TGG | 0.328772 | 4.3:+85641732 | MS.gene034040:CDS |
| CTGCATGGTCTTGGAGATAA+TGG | 0.359696 | 4.3:+85641814 | MS.gene034040:CDS |
| GAACCATGCATGTTATCAAA+TGG | 0.366787 | 4.3:+85641388 | MS.gene034040:CDS |
| TGGGATTGGAGGCTTCAGTA+TGG | 0.372915 | 4.3:+85643175 | MS.gene034040:CDS |
| GATGTAGTCCTCTACAAATA+TGG | 0.381501 | 4.3:+85643838 | MS.gene034040:CDS |
| CAGGCATGAGCCAAGCCAAT+TGG | 0.382122 | 4.3:-85644294 | None:intergenic |
| ATAGTCTGGCTGCATGGTCT+TGG | 0.385531 | 4.3:+85641805 | MS.gene034040:CDS |
| CAGATGATGGTCCAGATGAT+TGG | 0.393245 | 4.3:+85642872 | MS.gene034040:CDS |
| AACCATGCATGTTATCAAAT+GGG | 0.399917 | 4.3:+85641389 | MS.gene034040:CDS |
| TATTGTGGTATAGTGAAAGT+TGG | 0.404396 | 4.3:+85643155 | MS.gene034040:intron |
| GGCTCATGCCTGGGGCTTGG+GGG | 0.436395 | 4.3:+85644305 | MS.gene034040:CDS |
| GCTCAAACCTTGTGTTCAGC+AGG | 0.437434 | 4.3:+85643871 | MS.gene034040:CDS |
| ATTGTGGTATAGTGAAAGTT+GGG | 0.439268 | 4.3:+85643156 | MS.gene034040:intron |
| CAATAATCAGGGTTTGATAT+GGG | 0.441882 | 4.3:+85642841 | MS.gene034040:intron |
| ACTTGATGCCATATTATTTG+AGG | 0.443726 | 4.3:-85644330 | None:intergenic |
| CTTGATGCCATATTATTTGA+GGG | 0.445143 | 4.3:-85644329 | None:intergenic |
| TCTAAACCCTCCCAATCATC+TGG | 0.452958 | 4.3:-85642883 | None:intergenic |
| ACAGGTCGGGTAGGAGCAGT+TGG | 0.454599 | 4.3:-85642669 | None:intergenic |
| TATAACATTCAAATCCTATG+AGG | 0.464278 | 4.3:+85643903 | MS.gene034040:CDS |
| AGATGATGGTCCAGATGATT+GGG | 0.466419 | 4.3:+85642873 | MS.gene034040:CDS |
| AACATCAAGCAACTATAGTC+TGG | 0.471029 | 4.3:+85641791 | MS.gene034040:CDS |
| GCCATGGGAAGGTATGGAAA+TGG | 0.473050 | 4.3:+85643233 | MS.gene034040:CDS |
| TGCTCTTAAGTTGAGACTGC+AGG | 0.479567 | 4.3:-85643261 | None:intergenic |
| GGGATTGGAGGCTTCAGTAT+GGG | 0.484847 | 4.3:+85643176 | MS.gene034040:CDS |
| ATTGTTGTATACCTTGATCC+TGG | 0.487269 | 4.3:-85643308 | None:intergenic |
| TTGGAAGTGGAAGTGATTCA+AGG | 0.493512 | 4.3:-85642388 | None:intergenic |
| GCATGTTATCAAATGGGGTC+TGG | 0.494637 | 4.3:+85641395 | MS.gene034040:CDS |
| GCTGAAGTCTCCAATTGGCT+TGG | 0.496475 | 4.3:+85644284 | MS.gene034040:CDS |
| ATAGTGAAAGTTGGGATTGG+AGG | 0.499249 | 4.3:+85643164 | MS.gene034040:intron |
| TACAAACTTACATTTGGAAG+TGG | 0.499274 | 4.3:-85642401 | None:intergenic |
| ATTGGCTTGGCTCATGCCTG+GGG | 0.502183 | 4.3:+85644297 | MS.gene034040:CDS |
| AGATGGCTGAAGTCTCCAAT+TGG | 0.504814 | 4.3:+85644279 | MS.gene034040:CDS |
| GGTATAGTGAAAGTTGGGAT+TGG | 0.506683 | 4.3:+85643161 | MS.gene034040:intron |
| GCCTTGAAAGTACCATCAGC+TGG | 0.508974 | 4.3:-85642946 | None:intergenic |
| CAGTTATTGGACTAAGTGGC+TGG | 0.511811 | 4.3:+85643282 | MS.gene034040:CDS |
| ACCCGACCTGTAGCTATACT+TGG | 0.523563 | 4.3:+85642681 | MS.gene034040:CDS |
| GAGACTTCAGCCATCTCTCT+AGG | 0.530300 | 4.3:-85644272 | None:intergenic |
| ACACATGTAGTGAGACCTAA+AGG | 0.532303 | 4.3:+85641766 | MS.gene034040:CDS |
| ACCAAGTATAGCTACAGGTC+GGG | 0.532936 | 4.3:-85642682 | None:intergenic |
| CTCAAACCTTGTGTTCAGCA+GGG | 0.534728 | 4.3:+85643872 | MS.gene034040:CDS |
| GTGGCTGGCTTCCAGGATCA+AGG | 0.539805 | 4.3:+85643297 | MS.gene034040:CDS |
| GTCTTGGAGATAATGGTTTG+AGG | 0.543260 | 4.3:+85641821 | MS.gene034040:CDS |
| AGAGCAGTTATTGGACTAAG+TGG | 0.552676 | 4.3:+85643278 | MS.gene034040:CDS |
| ATAACATTCAAATCCTATGA+GGG | 0.562724 | 4.3:+85643904 | MS.gene034040:CDS |
| AAGCCACCAAGTATAGCTAC+AGG | 0.562898 | 4.3:-85642687 | None:intergenic |
| CAGGTCGGGTAGGAGCAGTT+GGG | 0.563753 | 4.3:-85642668 | None:intergenic |
| GCTCTTAAGTTGAGACTGCA+GGG | 0.570121 | 4.3:-85643260 | None:intergenic |
| CGACCTGTAGCTATACTTGG+TGG | 0.573380 | 4.3:+85642684 | MS.gene034040:CDS |
| GCCATTTCCATACCTTCCCA+TGG | 0.577058 | 4.3:-85643234 | None:intergenic |
| ATGGGAGAACTATCAGATGA+TGG | 0.578285 | 4.3:+85642859 | MS.gene034040:CDS |
| TTGAAACCCTGCTGAACACA+AGG | 0.578854 | 4.3:-85643878 | None:intergenic |
| GCAACTATAGTCTGGCTGCA+TGG | 0.583738 | 4.3:+85641799 | MS.gene034040:CDS |
| ACCCCATTTGATAACATGCA+TGG | 0.589572 | 4.3:-85641391 | None:intergenic |
| ACTTCTCTCCATATTTGTAG+AGG | 0.592373 | 4.3:-85643846 | None:intergenic |
| AATTGTCACATGAAGCAAGA+AGG | 0.595405 | 4.3:+85643499 | MS.gene034040:CDS |
| TTATACAGTTCCTAGAGAGA+TGG | 0.595540 | 4.3:+85644262 | MS.gene034040:CDS |
| ATAGTGACATACTAATTCCA+TGG | 0.603581 | 4.3:-85643551 | None:intergenic |
| CACCAAGTATAGCTACAGGT+CGG | 0.615230 | 4.3:-85642683 | None:intergenic |
| TTAAGTTGAGACTGCAGGGG+AGG | 0.616117 | 4.3:-85643256 | None:intergenic |
| TTGTCAACTGAGCCAGCTGA+TGG | 0.618407 | 4.3:+85642934 | MS.gene034040:CDS |
| AGTATAGCTACAGGTCGGGT+AGG | 0.625069 | 4.3:-85642678 | None:intergenic |
| TGATGGTCCAGATGATTGGG+AGG | 0.628482 | 4.3:+85642876 | MS.gene034040:CDS |
| ACCATGCATGTTATCAAATG+GGG | 0.644999 | 4.3:+85641390 | MS.gene034040:CDS |
| GATGGTCCAGATGATTGGGA+GGG | 0.653067 | 4.3:+85642877 | MS.gene034040:CDS |
| ATTTGCAATATGTGCTGCTG+AGG | 0.655308 | 4.3:-85642908 | None:intergenic |
| GTCATGTTGTAGAAGACATG+CGG | 0.655778 | 4.3:+85644351 | MS.gene034040:CDS |
| TAACATTCAAATCCTATGAG+GGG | 0.669236 | 4.3:+85643905 | MS.gene034040:CDS |
| CTCTTAAGTTGAGACTGCAG+GGG | 0.679564 | 4.3:-85643259 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATAATTTTTTTAAAAAA+AGG | - | chr4.3:85643935-85643954 | None:intergenic | 0.0% |
| !!! | AAAAGTTGTTATTTTTTTAT+AGG | + | chr4.3:85642033-85642052 | MS.gene034040:intron | 10.0% |
| !!! | AAATCTTTATATTTTTTATG+AGG | - | chr4.3:85642992-85643011 | None:intergenic | 10.0% |
| !!! | AATCTTTATATTTTTTATGA+GGG | - | chr4.3:85642991-85643010 | None:intergenic | 10.0% |
| !! | AAAAAAAGTAGTAGTTAATT+TGG | - | chr4.3:85641946-85641965 | None:intergenic | 15.0% |
| !! | CATAATAAAAAATTTAAGCT+TGG | + | chr4.3:85642342-85642361 | MS.gene034040:intron | 15.0% |
| !! | GTATACAACAATATTATTTA+GGG | + | chr4.3:85643319-85643338 | MS.gene034040:intron | 15.0% |
| !! | TTGTTAAATAGCAAAATATA+AGG | - | chr4.3:85642824-85642843 | None:intergenic | 15.0% |
| !!! | ATTTGGTTTTTTATTTAAGT+AGG | + | chr4.3:85643591-85643610 | MS.gene034040:intron | 15.0% |
| !!! | TAAAAATGAATTTTCAAGAA+AGG | - | chr4.3:85641462-85641481 | None:intergenic | 15.0% |
| !! | AAAATCTTATAGAAAACTAG+AGG | - | chr4.3:85642740-85642759 | None:intergenic | 20.0% |
| !! | AAATCTTATAGAAAACTAGA+GGG | - | chr4.3:85642739-85642758 | None:intergenic | 20.0% |
| !! | AGATAGTAAATTATATCACA+AGG | + | chr4.3:85641918-85641937 | MS.gene034040:intron | 20.0% |
| !! | AGTACACATTATTAAATCTT+TGG | + | chr4.3:85643387-85643406 | MS.gene034040:intron | 20.0% |
| !! | ATCTAATTGTATTGAAAAGA+TGG | - | chr4.3:85641855-85641874 | None:intergenic | 20.0% |
| !! | CAACAAAAAAAAATTATGCA+TGG | - | chr4.3:85641489-85641508 | None:intergenic | 20.0% |
| !! | GATAGTAAATTATATCACAA+GGG | + | chr4.3:85641919-85641938 | MS.gene034040:intron | 20.0% |
| !! | GGTATACAACAATATTATTT+AGG | + | chr4.3:85643318-85643337 | MS.gene034040:intron | 20.0% |
| !! | TCAACTATGAAATAATAAAG+CGG | + | chr4.3:85643972-85643991 | MS.gene034040:intron | 20.0% |
| !!! | ACTTGACATGAATTTTTTTT+TGG | + | chr4.3:85642138-85642157 | MS.gene034040:intron | 20.0% |
| !!! | AGTTGTTATTTTTTTATAGG+TGG | + | chr4.3:85642036-85642055 | MS.gene034040:intron | 20.0% |
| !!! | ATAGTTGATATTATAAACCA+TGG | - | chr4.3:85641679-85641698 | None:intergenic | 20.0% |
| !!! | ATATCTAAAATTCATTTGTC+AGG | + | chr4.3:85643811-85643830 | MS.gene034040:intron | 20.0% |
| !!! | CTAAAACATCATTTTTATTG+TGG | + | chr4.3:85643140-85643159 | MS.gene034040:intron | 20.0% |
| !!! | TTGCTATTTAACAATAATCA+GGG | + | chr4.3:85642830-85642849 | MS.gene034040:intron | 20.0% |
| !!! | TTTGCTATTTAACAATAATC+AGG | + | chr4.3:85642829-85642848 | MS.gene034040:intron | 20.0% |
| !!! | TTTTTATTTAAGTAGGATGT+TGG | + | chr4.3:85643598-85643617 | MS.gene034040:intron | 20.0% |
| ! | AAAGAAAGGTAATGTAATCA+AGG | - | chr4.3:85641655-85641674 | None:intergenic | 25.0% |
| ! | AAATACTATAGAGCTATGTA+CGG | - | chr4.3:85642581-85642600 | None:intergenic | 25.0% |
| ! | AAGTAGAAACTTAAAGCAAT+CGG | + | chr4.3:85644099-85644118 | MS.gene034040:intron | 25.0% |
| ! | ACATCTTAATATGTGACATT+TGG | + | chr4.3:85643574-85643593 | MS.gene034040:intron | 25.0% |
| ! | AGAAAAACAAAGTTATCATG+TGG | - | chr4.3:85642105-85642124 | None:intergenic | 25.0% |
| ! | ATAACATTCAAATCCTATGA+GGG | + | chr4.3:85643904-85643923 | MS.gene034040:CDS | 25.0% |
| ! | CATTTGTATCAATGTTATGT+CGG | - | chr4.3:85643698-85643717 | None:intergenic | 25.0% |
| ! | GTTATATGATGCAGATAAAA+TGG | + | chr4.3:85642640-85642659 | MS.gene034040:intron | 25.0% |
| ! | TACACAATTCTGATTTAGTA+AGG | - | chr4.3:85642766-85642785 | None:intergenic | 25.0% |
| ! | TATAACATTCAAATCCTATG+AGG | + | chr4.3:85643903-85643922 | MS.gene034040:CDS | 25.0% |
| ! | TCAAATAGAATCTCAATAGA+AGG | - | chr4.3:85641997-85642016 | None:intergenic | 25.0% |
| ! | TGAGAATACAAACTTACATT+TGG | - | chr4.3:85642410-85642429 | None:intergenic | 25.0% |
| ! | TTATAAACCATGGTAAAGAA+AGG | - | chr4.3:85641669-85641688 | None:intergenic | 25.0% |
| ! | TTTGCAATTGATGTTAATGT+AGG | + | chr4.3:85643457-85643476 | MS.gene034040:intron | 25.0% |
| !! | CTATTTGAGATAAATTCTGT+TGG | + | chr4.3:85642009-85642028 | MS.gene034040:intron | 25.0% |
| !! | TTTATCATCTAGTTTAATCG+TGG | - | chr4.3:85644063-85644082 | None:intergenic | 25.0% |
| !! | TTTTACAACTATATACTCGA+AGG | - | chr4.3:85643359-85643378 | None:intergenic | 25.0% |
| !!! | AGCAATTGTTTTTCACTTTT+TGG | + | chr4.3:85644213-85644232 | MS.gene034040:intron | 25.0% |
| !!! | TATGCTGTATGTTTTTAGTA+TGG | + | chr4.3:85641965-85641984 | MS.gene034040:intron | 25.0% |
| AAAGGAAAATTTCTTGCAAG+GGG | - | chr4.3:85641444-85641463 | None:intergenic | 30.0% | |
| AACCATGCATGTTATCAAAT+GGG | + | chr4.3:85641389-85641408 | MS.gene034040:CDS | 30.0% | |
| AACTGCTAGAAGAACTAATT+TGG | + | chr4.3:85641732-85641751 | MS.gene034040:CDS | 30.0% | |
| AATCTTTGGTTGTTTACATG+TGG | + | chr4.3:85643401-85643420 | MS.gene034040:intron | 30.0% | |
| ACAAAAATTACCATTGAGTC+AGG | + | chr4.3:85642230-85642249 | MS.gene034040:intron | 30.0% | |
| ACAATAATCAGGGTTTGATA+TGG | + | chr4.3:85642840-85642859 | MS.gene034040:intron | 30.0% | |
| ACAGACAAACACATAGATAT+TGG | - | chr4.3:85642556-85642575 | None:intergenic | 30.0% | |
| ACTTGATGCCATATTATTTG+AGG | - | chr4.3:85644333-85644352 | None:intergenic | 30.0% | |
| AGAAAGGAAAATTTCTTGCA+AGG | - | chr4.3:85641446-85641465 | None:intergenic | 30.0% | |
| ATACTTTATATGCCCTTTGA+AGG | + | chr4.3:85641703-85641722 | MS.gene034040:intron | 30.0% | |
| ATAGTGACATACTAATTCCA+TGG | - | chr4.3:85643554-85643573 | None:intergenic | 30.0% | |
| ATTAAAATGACCTGACTCAA+TGG | - | chr4.3:85642243-85642262 | None:intergenic | 30.0% | |
| ATTGTGGTATAGTGAAAGTT+GGG | + | chr4.3:85643156-85643175 | MS.gene034040:intron | 30.0% | |
| CAATAATCAGGGTTTGATAT+GGG | + | chr4.3:85642841-85642860 | MS.gene034040:intron | 30.0% | |
| CTTGATGCCATATTATTTGA+GGG | - | chr4.3:85644332-85644351 | None:intergenic | 30.0% | |
| GAAAGGAAAATTTCTTGCAA+GGG | - | chr4.3:85641445-85641464 | None:intergenic | 30.0% | |
| GAAGATAACAAACATCCATT+AGG | - | chr4.3:85642298-85642317 | None:intergenic | 30.0% | |
| GATCAAATCAGTGAAATCTT+TGG | + | chr4.3:85644016-85644035 | MS.gene034040:intron | 30.0% | |
| TAACATTCAAATCCTATGAG+GGG | + | chr4.3:85643905-85643924 | MS.gene034040:CDS | 30.0% | |
| TACAAACTTACATTTGGAAG+TGG | - | chr4.3:85642404-85642423 | None:intergenic | 30.0% | |
| TACATTACCTTTCTTTACCA+TGG | + | chr4.3:85641659-85641678 | MS.gene034040:intron | 30.0% | |
| TACTTTATATGCCCTTTGAA+GGG | + | chr4.3:85641704-85641723 | MS.gene034040:intron | 30.0% | |
| TATAGGTGGAAAGCTTAATT+TGG | + | chr4.3:85642050-85642069 | MS.gene034040:intron | 30.0% | |
| TATTGTGGTATAGTGAAAGT+TGG | + | chr4.3:85643155-85643174 | MS.gene034040:intron | 30.0% | |
| TGACAAATTGATCTGATCAT+CGG | + | chr4.3:85644161-85644180 | MS.gene034040:intron | 30.0% | |
| TTACTAAGATTCTGGACTAA+GGG | + | chr4.3:85642078-85642097 | MS.gene034040:intron | 30.0% | |
| ! | AGAAGAACTAATTTGGAGTT+TGG | + | chr4.3:85641739-85641758 | MS.gene034040:CDS | 30.0% |
| ! | GCAAATATGTGTTTTCCTAA+TGG | + | chr4.3:85642280-85642299 | MS.gene034040:intron | 30.0% |
| !! | AGTCAGGTCATTTTAATCTA+TGG | + | chr4.3:85642246-85642265 | MS.gene034040:intron | 30.0% |
| !!! | TTTGGCTTGTTATTTTGTGT+AGG | + | chr4.3:85644231-85644250 | MS.gene034040:intron | 30.0% |
| AAAAACAAGGAAGGTAGAGA+AGG | + | chr4.3:85644377-85644396 | MS.gene034040:CDS | 35.0% | |
| AACATCAAGCAACTATAGTC+TGG | + | chr4.3:85641791-85641810 | MS.gene034040:CDS | 35.0% | |
| AATTGTCACATGAAGCAAGA+AGG | + | chr4.3:85643499-85643518 | MS.gene034040:CDS | 35.0% | |
| ACCATGCATGTTATCAAATG+GGG | + | chr4.3:85641390-85641409 | MS.gene034040:CDS | 35.0% | |
| ACTTCTCTCCATATTTGTAG+AGG | - | chr4.3:85643849-85643868 | None:intergenic | 35.0% | |
| ATTGTTGTATACCTTGATCC+TGG | - | chr4.3:85643311-85643330 | None:intergenic | 35.0% | |
| CAAAGATTGTGACTATAGCT+TGG | - | chr4.3:85641534-85641553 | None:intergenic | 35.0% | |
| CATTTGAGCATTCAATGCAA+CGG | - | chr4.3:85643740-85643759 | None:intergenic | 35.0% | |
| CTCAACTTAAGAGCAGTTAT+TGG | + | chr4.3:85643269-85643288 | MS.gene034040:CDS | 35.0% | |
| GAACCATGCATGTTATCAAA+TGG | + | chr4.3:85641388-85641407 | MS.gene034040:CDS | 35.0% | |
| GATCAGATCAATTTGTCAGT+TGG | - | chr4.3:85644159-85644178 | None:intergenic | 35.0% | |
| GATGTAGTCCTCTACAAATA+TGG | + | chr4.3:85643838-85643857 | MS.gene034040:CDS | 35.0% | |
| GTTACTAAGATTCTGGACTA+AGG | + | chr4.3:85642077-85642096 | MS.gene034040:intron | 35.0% | |
| TCAGTGAAATCTTTGGATCA+TGG | + | chr4.3:85644023-85644042 | MS.gene034040:intron | 35.0% | |
| TCTCAAGTATGGATGGTAAA+AGG | - | chr4.3:85642433-85642452 | None:intergenic | 35.0% | |
| TCTTTGGATCATGGTTCAAT+TGG | + | chr4.3:85644032-85644051 | MS.gene034040:intron | 35.0% | |
| TGGAAGAGTTACTAAGATTC+TGG | + | chr4.3:85642070-85642089 | MS.gene034040:intron | 35.0% | |
| TTATACAGTTCCTAGAGAGA+TGG | + | chr4.3:85644262-85644281 | MS.gene034040:CDS | 35.0% | |
| ! | AATTGATCTGATCATCGGTT+TGG | + | chr4.3:85644166-85644185 | MS.gene034040:intron | 35.0% |
| ! | GTTGCTTGATGTTTTCCTTT+AGG | - | chr4.3:85641784-85641803 | None:intergenic | 35.0% |
| !!! | CTTGTTATTTTGTGTAGGCT+TGG | + | chr4.3:85644236-85644255 | MS.gene034040:intron | 35.0% |
| AAGGTTTGTGACTGTGATTG+TGG | - | chr4.3:85641636-85641655 | None:intergenic | 40.0% | |
| ACACATGTAGTGAGACCTAA+AGG | + | chr4.3:85641766-85641785 | MS.gene034040:CDS | 40.0% | |
| AGACATGCGGAACAAAAACA+AGG | + | chr4.3:85644364-85644383 | MS.gene034040:CDS | 40.0% | |
| AGAGCAGTTATTGGACTAAG+TGG | + | chr4.3:85643278-85643297 | MS.gene034040:CDS | 40.0% | |
| ATAGTGAAAGTTGGGATTGG+AGG | + | chr4.3:85643164-85643183 | MS.gene034040:intron | 40.0% | |
| ATGCGGAACAAAAACAAGGA+AGG | + | chr4.3:85644368-85644387 | MS.gene034040:CDS | 40.0% | |
| ATGGGAGAACTATCAGATGA+TGG | + | chr4.3:85642859-85642878 | MS.gene034040:CDS | 40.0% | |
| ATTCCATGGCTCAGAAAAAC+TGG | - | chr4.3:85643540-85643559 | None:intergenic | 40.0% | |
| CAATTGATGTAGCCGAAATG+TGG | + | chr4.3:85641580-85641599 | MS.gene034040:intron | 40.0% | |
| CCATCCATACTTGAGATTGA+AGG | + | chr4.3:85642437-85642456 | MS.gene034040:intron | 40.0% | |
| CCTTCAATCTCAAGTATGGA+TGG | - | chr4.3:85642440-85642459 | None:intergenic | 40.0% | |
| CTGATCAGAATGATGACATC+CGG | + | chr4.3:85643063-85643082 | MS.gene034040:intron | 40.0% | |
| GGTATAGTGAAAGTTGGGAT+TGG | + | chr4.3:85643161-85643180 | MS.gene034040:intron | 40.0% | |
| GTCATGTTGTAGAAGACATG+CGG | + | chr4.3:85644351-85644370 | MS.gene034040:CDS | 40.0% | |
| TAACGTCTGTGACCACATTT+CGG | - | chr4.3:85641595-85641614 | None:intergenic | 40.0% | |
| TTGGAAGTGGAAGTGATTCA+AGG | - | chr4.3:85642391-85642410 | None:intergenic | 40.0% | |
| TTGTGACTATAGCTTGGCTA+AGG | - | chr4.3:85641528-85641547 | None:intergenic | 40.0% | |
| ! | ACCCCATTTGATAACATGCA+TGG | - | chr4.3:85641394-85641413 | None:intergenic | 40.0% |
| ! | AGATGATGGTCCAGATGATT+GGG | + | chr4.3:85642873-85642892 | MS.gene034040:CDS | 40.0% |
| ! | ATTTGCAATATGTGCTGCTG+AGG | - | chr4.3:85642911-85642930 | None:intergenic | 40.0% |
| ! | GGAGATAATGGTTTGAGGTA+TGG | + | chr4.3:85641826-85641845 | MS.gene034040:intron | 40.0% |
| ! | GTCAGTTGGTTCAAGTCTAA+TGG | - | chr4.3:85644145-85644164 | None:intergenic | 40.0% |
| ! | GTCTTGGAGATAATGGTTTG+AGG | + | chr4.3:85641821-85641840 | MS.gene034040:CDS | 40.0% |
| ! | TGTGTATTCAGAAAGCGTAG+TGG | + | chr4.3:85643770-85643789 | MS.gene034040:intron | 40.0% |
| ! | TTACCAGTTTTTCTGAGCCA+TGG | + | chr4.3:85643534-85643553 | MS.gene034040:CDS | 40.0% |
| !!! | TCTGCAACTTGTTTTGCCAT+GGG | + | chr4.3:85643218-85643237 | MS.gene034040:CDS | 40.0% |
| !!! | TTCTGCAACTTGTTTTGCCA+TGG | + | chr4.3:85643217-85643236 | MS.gene034040:CDS | 40.0% |
| AAAAAAGGCTCACCCCTCAT+AGG | - | chr4.3:85643920-85643939 | None:intergenic | 45.0% | |
| AAGCCACCAAGTATAGCTAC+AGG | - | chr4.3:85642690-85642709 | None:intergenic | 45.0% | |
| AATCACGAGAACAATCGCAC+CGG | - | chr4.3:85643085-85643104 | None:intergenic | 45.0% | |
| ACCAAGTATAGCTACAGGTC+GGG | - | chr4.3:85642685-85642704 | None:intergenic | 45.0% | |
| AGATGGCTGAAGTCTCCAAT+TGG | + | chr4.3:85644279-85644298 | MS.gene034040:CDS | 45.0% | |
| CACCAAGTATAGCTACAGGT+CGG | - | chr4.3:85642686-85642705 | None:intergenic | 45.0% | |
| CACGCCTTCAATCTCAAGTA+TGG | - | chr4.3:85642444-85642463 | None:intergenic | 45.0% | |
| CAGTTATTGGACTAAGTGGC+TGG | + | chr4.3:85643282-85643301 | MS.gene034040:CDS | 45.0% | |
| CGGATGTCATCATTCTGATC+AGG | - | chr4.3:85643065-85643084 | None:intergenic | 45.0% | |
| CTCAAACCTTGTGTTCAGCA+GGG | + | chr4.3:85643872-85643891 | MS.gene034040:CDS | 45.0% | |
| GCATGTTATCAAATGGGGTC+TGG | + | chr4.3:85641395-85641414 | MS.gene034040:CDS | 45.0% | |
| TCTAAACCCTCCCAATCATC+TGG | - | chr4.3:85642886-85642905 | None:intergenic | 45.0% | |
| TGGGGGACCCTCAAATAATA+TGG | + | chr4.3:85644322-85644341 | MS.gene034040:CDS | 45.0% | |
| TTGAAACCCTGCTGAACACA+AGG | - | chr4.3:85643881-85643900 | None:intergenic | 45.0% | |
| ! | CAGATGATGGTCCAGATGAT+TGG | + | chr4.3:85642872-85642891 | MS.gene034040:CDS | 45.0% |
| ! | CTGCATGGTCTTGGAGATAA+TGG | + | chr4.3:85641814-85641833 | MS.gene034040:CDS | 45.0% |
| ! | TATATGCCCTTTGAAGGGAG+TGG | + | chr4.3:85641709-85641728 | MS.gene034040:intron | 45.0% |
| ! | TATCAAATGGGGTCTGGTTC+TGG | + | chr4.3:85641401-85641420 | MS.gene034040:CDS | 45.0% |
| ! | TGTTTTGCCATGGGAAGGTA+TGG | + | chr4.3:85643227-85643246 | MS.gene034040:CDS | 45.0% |
| !! | CTCTTAAGTTGAGACTGCAG+GGG | - | chr4.3:85643262-85643281 | None:intergenic | 45.0% |
| !! | GCTCTTAAGTTGAGACTGCA+GGG | - | chr4.3:85643263-85643282 | None:intergenic | 45.0% |
| !! | GTTTGTTGTCCGACATGTGT+GGG | + | chr4.3:85643669-85643688 | MS.gene034040:intron | 45.0% |
| !! | TGCTCTTAAGTTGAGACTGC+AGG | - | chr4.3:85643264-85643283 | None:intergenic | 45.0% |
| !! | TGTTTGTTGTCCGACATGTG+TGG | + | chr4.3:85643668-85643687 | MS.gene034040:intron | 45.0% |
| !!! | CAACTTGTTTTGCCATGGGA+AGG | + | chr4.3:85643222-85643241 | MS.gene034040:CDS | 45.0% |
| ACCCGACCTGTAGCTATACT+TGG | + | chr4.3:85642681-85642700 | MS.gene034040:CDS | 50.0% | |
| AGCAGTTCCACTCCCTTCAA+AGG | - | chr4.3:85641719-85641738 | None:intergenic | 50.0% | |
| AGTATAGCTACAGGTCGGGT+AGG | - | chr4.3:85642681-85642700 | None:intergenic | 50.0% | |
| ATAGTCTGGCTGCATGGTCT+TGG | + | chr4.3:85641805-85641824 | MS.gene034040:CDS | 50.0% | |
| CGACCTGTAGCTATACTTGG+TGG | + | chr4.3:85642684-85642703 | MS.gene034040:CDS | 50.0% | |
| GAGACTTCAGCCATCTCTCT+AGG | - | chr4.3:85644275-85644294 | None:intergenic | 50.0% | |
| GATGGTCCAGATGATTGGGA+GGG | + | chr4.3:85642877-85642896 | MS.gene034040:CDS | 50.0% | |
| GCAACTATAGTCTGGCTGCA+TGG | + | chr4.3:85641799-85641818 | MS.gene034040:CDS | 50.0% | |
| GCAGTTCCACTCCCTTCAAA+GGG | - | chr4.3:85641718-85641737 | None:intergenic | 50.0% | |
| GCCAGCTGATGGTACTTTCA+AGG | + | chr4.3:85642945-85642964 | MS.gene034040:intron | 50.0% | |
| GCCATTTCCATACCTTCCCA+TGG | - | chr4.3:85643237-85643256 | None:intergenic | 50.0% | |
| GCTCAAACCTTGTGTTCAGC+AGG | + | chr4.3:85643871-85643890 | MS.gene034040:CDS | 50.0% | |
| GCTGAAGTCTCCAATTGGCT+TGG | + | chr4.3:85644284-85644303 | MS.gene034040:CDS | 50.0% | |
| GGGATTGGAGGCTTCAGTAT+GGG | + | chr4.3:85643176-85643195 | MS.gene034040:CDS | 50.0% | |
| TGATGGTCCAGATGATTGGG+AGG | + | chr4.3:85642876-85642895 | MS.gene034040:CDS | 50.0% | |
| TGGGATTGGAGGCTTCAGTA+TGG | + | chr4.3:85643175-85643194 | MS.gene034040:CDS | 50.0% | |
| TGTGACTGTGATTGTGGTCG+CGG | - | chr4.3:85641630-85641649 | None:intergenic | 50.0% | |
| TTGTCAACTGAGCCAGCTGA+TGG | + | chr4.3:85642934-85642953 | MS.gene034040:CDS | 50.0% | |
| ! | GCCATGGGAAGGTATGGAAA+TGG | + | chr4.3:85643233-85643252 | MS.gene034040:CDS | 50.0% |
| !! | AATTGGCTTGGCTCATGCCT+GGG | + | chr4.3:85644296-85644315 | MS.gene034040:CDS | 50.0% |
| !! | GCCTTGAAAGTACCATCAGC+TGG | - | chr4.3:85642949-85642968 | None:intergenic | 50.0% |
| !! | TTAAGTTGAGACTGCAGGGG+AGG | - | chr4.3:85643259-85643278 | None:intergenic | 50.0% |
| CAGGCATGAGCCAAGCCAAT+TGG | - | chr4.3:85644297-85644316 | None:intergenic | 55.0% | |
| ! | TGTCGGTGTCCCACACATGT+CGG | - | chr4.3:85643681-85643700 | None:intergenic | 55.0% |
| !! | ATTGGCTTGGCTCATGCCTG+GGG | + | chr4.3:85644297-85644316 | MS.gene034040:CDS | 55.0% |
| !! | CAATTGGCTTGGCTCATGCC+TGG | + | chr4.3:85644295-85644314 | MS.gene034040:CDS | 55.0% |
| ACAGGTCGGGTAGGAGCAGT+TGG | - | chr4.3:85642672-85642691 | None:intergenic | 60.0% | |
| CAGGTCGGGTAGGAGCAGTT+GGG | - | chr4.3:85642671-85642690 | None:intergenic | 60.0% | |
| TTGGCTCATGCCTGGGGCTT+GGG | + | chr4.3:85644303-85644322 | MS.gene034040:CDS | 60.0% | |
| !! | GGACTAAGTGGCTGGCTTCC+AGG | + | chr4.3:85643290-85643309 | MS.gene034040:CDS | 60.0% |
| !! | GTGGCTGGCTTCCAGGATCA+AGG | + | chr4.3:85643297-85643316 | MS.gene034040:CDS | 60.0% |
| CTTGGCTCATGCCTGGGGCT+TGG | + | chr4.3:85644302-85644321 | MS.gene034040:CDS | 65.0% | |
| TGGCTCATGCCTGGGGCTTG+GGG | + | chr4.3:85644304-85644323 | MS.gene034040:CDS | 65.0% | |
| GGCTCATGCCTGGGGCTTGG+GGG | + | chr4.3:85644305-85644324 | MS.gene034040:CDS | 70.0% | |
| TTGAGGGTCCCCCAAGCCCC+AGG | - | chr4.3:85644316-85644335 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 85641386 | 85644406 | 85641386 | ID=MS.gene034040 |
| chr4.3 | mRNA | 85641386 | 85644406 | 85641386 | ID=MS.gene034040.t1;Parent=MS.gene034040 |
| chr4.3 | exon | 85641386 | 85641422 | 85641386 | ID=MS.gene034040.t1.exon1;Parent=MS.gene034040.t1 |
| chr4.3 | CDS | 85641386 | 85641422 | 85641386 | ID=cds.MS.gene034040.t1;Parent=MS.gene034040.t1 |
| chr4.3 | exon | 85641725 | 85641842 | 85641725 | ID=MS.gene034040.t1.exon2;Parent=MS.gene034040.t1 |
| chr4.3 | CDS | 85641725 | 85641842 | 85641725 | ID=cds.MS.gene034040.t1;Parent=MS.gene034040.t1 |
| chr4.3 | exon | 85642376 | 85642412 | 85642376 | ID=MS.gene034040.t1.exon3;Parent=MS.gene034040.t1 |
| chr4.3 | CDS | 85642376 | 85642412 | 85642376 | ID=cds.MS.gene034040.t1;Parent=MS.gene034040.t1 |
| chr4.3 | exon | 85642654 | 85642723 | 85642654 | ID=MS.gene034040.t1.exon4;Parent=MS.gene034040.t1 |
| chr4.3 | CDS | 85642654 | 85642723 | 85642654 | ID=cds.MS.gene034040.t1;Parent=MS.gene034040.t1 |
| chr4.3 | exon | 85642851 | 85642955 | 85642851 | ID=MS.gene034040.t1.exon5;Parent=MS.gene034040.t1 |
| chr4.3 | CDS | 85642851 | 85642955 | 85642851 | ID=cds.MS.gene034040.t1;Parent=MS.gene034040.t1 |
| chr4.3 | exon | 85643168 | 85643318 | 85643168 | ID=MS.gene034040.t1.exon6;Parent=MS.gene034040.t1 |
| chr4.3 | CDS | 85643168 | 85643318 | 85643168 | ID=cds.MS.gene034040.t1;Parent=MS.gene034040.t1 |
| chr4.3 | exon | 85643479 | 85643561 | 85643479 | ID=MS.gene034040.t1.exon7;Parent=MS.gene034040.t1 |
| chr4.3 | CDS | 85643479 | 85643561 | 85643479 | ID=cds.MS.gene034040.t1;Parent=MS.gene034040.t1 |
| chr4.3 | exon | 85643833 | 85643926 | 85643833 | ID=MS.gene034040.t1.exon8;Parent=MS.gene034040.t1 |
| chr4.3 | CDS | 85643833 | 85643926 | 85643833 | ID=cds.MS.gene034040.t1;Parent=MS.gene034040.t1 |
| chr4.3 | exon | 85644253 | 85644406 | 85644253 | ID=MS.gene034040.t1.exon9;Parent=MS.gene034040.t1 |
| chr4.3 | CDS | 85644253 | 85644406 | 85644253 | ID=cds.MS.gene034040.t1;Parent=MS.gene034040.t1 |
| Gene Sequence |
| Protein sequence |
