Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034041.t1 | XP_013454687.1 | 97.5 | 282 | 5 | 1 | 1 | 282 | 1 | 280 | 4.90E-158 | 567 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034041.t1 | P0CL95 | 30.6 | 245 | 132 | 8 | 30 | 253 | 10 | 237 | 6.5e-26 | 119.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034041.t1 | A0A072UHW3 | 97.5 | 282 | 5 | 1 | 1 | 282 | 1 | 280 | 3.5e-158 | 567.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene034041 | MS.gene86352 | PPI |
| MS.gene067344 | MS.gene034041 | PPI |
| MS.gene034042 | MS.gene034041 | PPI |
| MS.gene034041 | MS.gene89061 | PPI |
| MS.gene067343 | MS.gene034041 | PPI |
| MS.gene038854 | MS.gene034041 | PPI |
| MS.gene83338 | MS.gene034041 | PPI |
| MS.gene79485 | MS.gene034041 | PPI |
| MS.gene36243 | MS.gene034041 | PPI |
| MS.gene034041 | MS.gene37311 | PPI |
| MS.gene026794 | MS.gene034041 | PPI |
| MS.gene034040 | MS.gene034041 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034041.t1 | MTR_4g011320 | 97.518 | 282 | 5 | 1 | 1 | 282 | 1 | 280 | 0.0 | 565 |
| MS.gene034041.t1 | MTR_2g103140 | 83.077 | 260 | 41 | 2 | 1 | 260 | 1 | 257 | 2.77e-146 | 410 |
| MS.gene034041.t1 | MTR_2g054780 | 65.844 | 243 | 83 | 0 | 15 | 257 | 10 | 252 | 9.62e-119 | 341 |
| MS.gene034041.t1 | MTR_3g107630 | 67.797 | 236 | 76 | 0 | 22 | 257 | 19 | 254 | 1.30e-116 | 335 |
| MS.gene034041.t1 | MTR_2g054780 | 63.786 | 243 | 81 | 1 | 15 | 257 | 10 | 245 | 5.95e-112 | 323 |
| MS.gene034041.t1 | MTR_4g132890 | 30.088 | 226 | 131 | 8 | 37 | 253 | 4 | 211 | 1.83e-19 | 84.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034041.t1 | AT1G52700 | 73.684 | 247 | 63 | 1 | 11 | 257 | 9 | 253 | 2.64e-130 | 370 |
| MS.gene034041.t1 | AT1G52700 | 73.684 | 247 | 63 | 1 | 11 | 257 | 9 | 253 | 2.64e-130 | 370 |
| MS.gene034041.t1 | AT1G52700 | 73.469 | 245 | 63 | 1 | 13 | 257 | 2 | 244 | 6.60e-129 | 366 |
| MS.gene034041.t1 | AT3G15650 | 66.667 | 276 | 69 | 2 | 1 | 257 | 1 | 272 | 2.48e-126 | 361 |
| MS.gene034041.t1 | AT3G15650 | 71.595 | 257 | 69 | 1 | 1 | 257 | 1 | 253 | 8.82e-123 | 351 |
| MS.gene034041.t1 | AT3G15650 | 69.962 | 263 | 73 | 1 | 1 | 257 | 1 | 263 | 1.45e-121 | 348 |
| MS.gene034041.t1 | AT5G20060 | 64.257 | 249 | 88 | 1 | 9 | 257 | 5 | 252 | 2.80e-120 | 345 |
| MS.gene034041.t1 | AT5G20060 | 64.257 | 249 | 88 | 1 | 9 | 257 | 5 | 252 | 2.80e-120 | 345 |
| MS.gene034041.t1 | AT5G20060 | 64.257 | 249 | 88 | 1 | 9 | 257 | 5 | 252 | 2.80e-120 | 345 |
| MS.gene034041.t1 | AT5G20060 | 64.257 | 249 | 88 | 1 | 9 | 257 | 5 | 252 | 2.80e-120 | 345 |
| MS.gene034041.t1 | AT1G52700 | 73.134 | 201 | 54 | 0 | 57 | 257 | 1 | 201 | 3.19e-105 | 305 |
| MS.gene034041.t1 | AT1G52700 | 75.661 | 189 | 44 | 1 | 11 | 199 | 9 | 195 | 1.51e-100 | 293 |
| MS.gene034041.t1 | AT1G52700 | 75.661 | 189 | 44 | 1 | 11 | 199 | 9 | 195 | 1.51e-100 | 293 |
| MS.gene034041.t1 | AT1G51300 | 39.924 | 263 | 141 | 3 | 6 | 257 | 8 | 264 | 6.44e-59 | 189 |
| MS.gene034041.t1 | AT1G51300 | 41.667 | 216 | 118 | 2 | 16 | 229 | 27 | 236 | 6.67e-54 | 176 |
| MS.gene034041.t1 | AT1G52695 | 42.857 | 210 | 113 | 2 | 14 | 222 | 3 | 206 | 4.01e-52 | 170 |
| MS.gene034041.t1 | AT1G51300 | 43.312 | 157 | 81 | 2 | 16 | 170 | 16 | 166 | 7.54e-41 | 140 |
| MS.gene034041.t1 | AT1G47786 | 46.296 | 162 | 75 | 4 | 16 | 173 | 33 | 186 | 2.56e-37 | 130 |
| MS.gene034041.t1 | AT1G52470 | 37.383 | 214 | 116 | 5 | 22 | 235 | 13 | 208 | 7.58e-37 | 131 |
| MS.gene034041.t1 | AT1G52460 | 38.095 | 231 | 116 | 7 | 29 | 255 | 13 | 220 | 1.34e-35 | 127 |
| MS.gene034041.t1 | AT1G52470 | 39.326 | 178 | 90 | 5 | 22 | 199 | 13 | 172 | 2.99e-32 | 117 |
| MS.gene034041.t1 | AT1G52470 | 39.326 | 178 | 90 | 5 | 22 | 199 | 13 | 172 | 3.17e-32 | 117 |
| MS.gene034041.t1 | AT1G52440 | 34.135 | 208 | 84 | 4 | 29 | 234 | 17 | 173 | 9.26e-27 | 103 |
| MS.gene034041.t1 | AT1G47780 | 52.727 | 110 | 49 | 1 | 64 | 173 | 23 | 129 | 5.37e-26 | 99.8 |
| MS.gene034041.t1 | AT4G22300 | 31.050 | 219 | 124 | 7 | 40 | 249 | 51 | 251 | 9.71e-22 | 92.0 |
| MS.gene034041.t1 | AT4G22305 | 31.507 | 219 | 123 | 8 | 40 | 249 | 6 | 206 | 1.00e-20 | 88.6 |
Find 79 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGCTCATGCCTGGGGCTT+GGG | 0.096496 | 4.4:-88163698 | MS.gene034041:CDS |
| TGGCTCATGCCTGGGGCTTG+GGG | 0.138001 | 4.4:-88163697 | MS.gene034041:CDS |
| CTTGGCTCATGCCTGGGGCT+TGG | 0.151372 | 4.4:-88163699 | MS.gene034041:CDS |
| CAATTGGCTTGGCTCATGCC+TGG | 0.224859 | 4.4:-88163706 | MS.gene034041:CDS |
| CTCAACTTAAGAGCAGTTAT+TGG | 0.234690 | 4.4:-88164732 | MS.gene034041:CDS |
| AGAAGAACTAATTTGGAGTT+TGG | 0.266947 | 4.4:-88166262 | MS.gene034041:CDS |
| GTTATATGATGCAGATAAAA+TGG | 0.282666 | 4.4:-88165361 | MS.gene034041:intron |
| GGACTAAGTGGCTGGCTTCC+AGG | 0.288410 | 4.4:-88164711 | MS.gene034041:CDS |
| TATCAAATGGGGTCTGGTTC+TGG | 0.310234 | 4.4:-88166600 | MS.gene034041:intron |
| AATTGGCTTGGCTCATGCCT+GGG | 0.311627 | 4.4:-88163705 | MS.gene034041:CDS |
| ACAATAATCAGGGTTTGATA+TGG | 0.314213 | 4.4:-88165161 | MS.gene034041:intron |
| AACTGCTAGAAGAACTAATT+TGG | 0.328772 | 4.4:-88166269 | MS.gene034041:CDS |
| CTGCATGGTCTTGGAGATAA+TGG | 0.359696 | 4.4:-88166187 | MS.gene034041:CDS |
| GAACCATGCATGTTATCAAA+TGG | 0.366787 | 4.4:-88166613 | MS.gene034041:CDS |
| TGGGATTGGAGGCTTCAGTA+TGG | 0.372915 | 4.4:-88164826 | MS.gene034041:CDS |
| GATGTAGTCCTCTACAAATA+TGG | 0.381501 | 4.4:-88164163 | MS.gene034041:CDS |
| CAGGCATGAGCCAAGCCAAT+TGG | 0.382122 | 4.4:+88163707 | None:intergenic |
| ATAGTCTGGCTGCATGGTCT+TGG | 0.385531 | 4.4:-88166196 | MS.gene034041:CDS |
| CAGATGATGGTCCAGATGAT+TGG | 0.393245 | 4.4:-88165129 | MS.gene034041:CDS |
| AACCATGCATGTTATCAAAT+GGG | 0.399917 | 4.4:-88166612 | MS.gene034041:CDS |
| TATTGTGGTATAGTGAAAGT+TGG | 0.404396 | 4.4:-88164846 | MS.gene034041:intron |
| GGCTCATGCCTGGGGCTTGG+GGG | 0.436395 | 4.4:-88163696 | MS.gene034041:CDS |
| GCTCAAACCTTGTGTTCAGC+AGG | 0.437434 | 4.4:-88164130 | MS.gene034041:CDS |
| ATTGTGGTATAGTGAAAGTT+GGG | 0.439268 | 4.4:-88164845 | MS.gene034041:intron |
| CAATAATCAGGGTTTGATAT+GGG | 0.441882 | 4.4:-88165160 | MS.gene034041:intron |
| ACTTGATGCCATATTATTTG+AGG | 0.443726 | 4.4:+88163671 | None:intergenic |
| CTTGATGCCATATTATTTGA+GGG | 0.445143 | 4.4:+88163672 | None:intergenic |
| TCTAAACCCTCCCAATCATC+TGG | 0.452958 | 4.4:+88165118 | None:intergenic |
| ACAGGTCGGGTAGGAGCAGT+TGG | 0.454599 | 4.4:+88165332 | None:intergenic |
| TATAACATTCAAATCCTATG+AGG | 0.464278 | 4.4:-88164098 | MS.gene034041:CDS |
| AGATGATGGTCCAGATGATT+GGG | 0.466419 | 4.4:-88165128 | MS.gene034041:CDS |
| AACATCAAGCAACTATAGTC+TGG | 0.471029 | 4.4:-88166210 | MS.gene034041:CDS |
| GCCATGGGAAGGTATGGAAA+TGG | 0.473050 | 4.4:-88164768 | MS.gene034041:CDS |
| TGCTCTTAAGTTGAGACTGC+AGG | 0.479567 | 4.4:+88164740 | None:intergenic |
| GGGATTGGAGGCTTCAGTAT+GGG | 0.484847 | 4.4:-88164825 | MS.gene034041:CDS |
| ATTGTTGTATACCTTGATCC+TGG | 0.487269 | 4.4:+88164693 | None:intergenic |
| TTGGAAGTGGAAGTGATTCA+AGG | 0.493512 | 4.4:+88165613 | None:intergenic |
| GCATGTTATCAAATGGGGTC+TGG | 0.494637 | 4.4:-88166606 | MS.gene034041:CDS |
| GCTGAAGTCTCCAATTGGCT+TGG | 0.496475 | 4.4:-88163717 | MS.gene034041:CDS |
| ATAGTGAAAGTTGGGATTGG+AGG | 0.499249 | 4.4:-88164837 | MS.gene034041:intron |
| TACAAACTTACATTTGGAAG+TGG | 0.499274 | 4.4:+88165600 | None:intergenic |
| ATTGGCTTGGCTCATGCCTG+GGG | 0.502183 | 4.4:-88163704 | MS.gene034041:CDS |
| AGATGGCTGAAGTCTCCAAT+TGG | 0.504814 | 4.4:-88163722 | MS.gene034041:CDS |
| GGTATAGTGAAAGTTGGGAT+TGG | 0.506683 | 4.4:-88164840 | MS.gene034041:intron |
| GCCTTGAAAGTACCATCAGC+TGG | 0.508974 | 4.4:+88165055 | None:intergenic |
| CAGTTATTGGACTAAGTGGC+TGG | 0.511811 | 4.4:-88164719 | MS.gene034041:CDS |
| ACCCGACCTGTAGCTATACT+TGG | 0.523563 | 4.4:-88165320 | MS.gene034041:CDS |
| GAGACTTCAGCCATCTCTCT+AGG | 0.530300 | 4.4:+88163729 | None:intergenic |
| ACACATGTAGTGAGACCTAA+AGG | 0.532303 | 4.4:-88166235 | MS.gene034041:CDS |
| ACCAAGTATAGCTACAGGTC+GGG | 0.532936 | 4.4:+88165319 | None:intergenic |
| CTCAAACCTTGTGTTCAGCA+GGG | 0.534728 | 4.4:-88164129 | MS.gene034041:CDS |
| GTGGCTGGCTTCCAGGATCA+AGG | 0.539805 | 4.4:-88164704 | MS.gene034041:intron |
| GTCTTGGAGATAATGGTTTG+AGG | 0.543260 | 4.4:-88166180 | MS.gene034041:intron |
| AGAGCAGTTATTGGACTAAG+TGG | 0.552676 | 4.4:-88164723 | MS.gene034041:CDS |
| ATAACATTCAAATCCTATGA+GGG | 0.562724 | 4.4:-88164097 | MS.gene034041:CDS |
| AAGCCACCAAGTATAGCTAC+AGG | 0.562898 | 4.4:+88165314 | None:intergenic |
| CAGGTCGGGTAGGAGCAGTT+GGG | 0.563753 | 4.4:+88165333 | None:intergenic |
| GCTCTTAAGTTGAGACTGCA+GGG | 0.570121 | 4.4:+88164741 | None:intergenic |
| CGACCTGTAGCTATACTTGG+TGG | 0.573380 | 4.4:-88165317 | MS.gene034041:CDS |
| GCCATTTCCATACCTTCCCA+TGG | 0.577058 | 4.4:+88164767 | None:intergenic |
| ATGGGAGAACTATCAGATGA+TGG | 0.578285 | 4.4:-88165142 | MS.gene034041:CDS |
| TTGAAACCCTGCTGAACACA+AGG | 0.578854 | 4.4:+88164123 | None:intergenic |
| GCAACTATAGTCTGGCTGCA+TGG | 0.583738 | 4.4:-88166202 | MS.gene034041:CDS |
| ACCCCATTTGATAACATGCA+TGG | 0.589572 | 4.4:+88166610 | None:intergenic |
| ACTTCTCTCCATATTTGTAG+AGG | 0.592373 | 4.4:+88164155 | None:intergenic |
| AATTGTCACATGAAGCAAGA+AGG | 0.595405 | 4.4:-88164502 | MS.gene034041:CDS |
| TTATACAGTTCCTAGAGAGA+TGG | 0.595540 | 4.4:-88163739 | MS.gene034041:CDS |
| ATAGTGACATACTAATTCCA+TGG | 0.603581 | 4.4:+88164450 | None:intergenic |
| CACCAAGTATAGCTACAGGT+CGG | 0.615230 | 4.4:+88165318 | None:intergenic |
| TTAAGTTGAGACTGCAGGGG+AGG | 0.616117 | 4.4:+88164745 | None:intergenic |
| TTGTCAACTGAGCCAGCTGA+TGG | 0.618407 | 4.4:-88165067 | MS.gene034041:intron |
| AGTATAGCTACAGGTCGGGT+AGG | 0.625069 | 4.4:+88165323 | None:intergenic |
| TGATGGTCCAGATGATTGGG+AGG | 0.628482 | 4.4:-88165125 | MS.gene034041:CDS |
| ACCATGCATGTTATCAAATG+GGG | 0.644999 | 4.4:-88166611 | MS.gene034041:CDS |
| GATGGTCCAGATGATTGGGA+GGG | 0.653067 | 4.4:-88165124 | MS.gene034041:CDS |
| ATTTGCAATATGTGCTGCTG+AGG | 0.655308 | 4.4:+88165093 | None:intergenic |
| GTCATGTTGTAGAAGACATG+CGG | 0.655778 | 4.4:-88163650 | MS.gene034041:CDS |
| TAACATTCAAATCCTATGAG+GGG | 0.669236 | 4.4:-88164096 | MS.gene034041:intron |
| CTCTTAAGTTGAGACTGCAG+GGG | 0.679564 | 4.4:+88164742 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATAATTTTTTTAAAAAA+AGG | + | chr4.4:88166166-88166185 | None:intergenic | 0.0% |
| !!! | AAAAGTTGTTATTTTTTTAT+AGG | - | chr4.4:88164264-88164283 | MS.gene034041:intron | 10.0% |
| !!! | AAATCTTTATATTTTTTATG+AGG | + | chr4.4:88165223-88165242 | None:intergenic | 10.0% |
| !!! | AATCTTTATATTTTTTATGA+GGG | + | chr4.4:88165222-88165241 | None:intergenic | 10.0% |
| !! | AAAAAAAGTAGTAGTTAATT+TGG | + | chr4.4:88164177-88164196 | None:intergenic | 15.0% |
| !! | CATAATAAAAAATTTAAGCT+TGG | - | chr4.4:88164573-88164592 | MS.gene034041:intron | 15.0% |
| !! | GTATACAACAATATTATTTA+GGG | - | chr4.4:88165550-88165569 | MS.gene034041:intron | 15.0% |
| !! | TTGTTAAATAGCAAAATATA+AGG | + | chr4.4:88165055-88165074 | None:intergenic | 15.0% |
| !!! | ATTTGGTTTTTTATTTAAGT+AGG | - | chr4.4:88165822-88165841 | MS.gene034041:intron | 15.0% |
| !!! | TAAAAATGAATTTTCAAGAA+AGG | + | chr4.4:88163693-88163712 | None:intergenic | 15.0% |
| !! | AAAATCTTATAGAAAACTAG+AGG | + | chr4.4:88164971-88164990 | None:intergenic | 20.0% |
| !! | AAATCTTATAGAAAACTAGA+GGG | + | chr4.4:88164970-88164989 | None:intergenic | 20.0% |
| !! | AGATAGTAAATTATATCACA+AGG | - | chr4.4:88164149-88164168 | MS.gene034041:CDS | 20.0% |
| !! | AGTACACATTATTAAATCTT+TGG | - | chr4.4:88165618-88165637 | MS.gene034041:CDS | 20.0% |
| !! | ATCTAATTGTATTGAAAAGA+TGG | + | chr4.4:88164086-88164105 | None:intergenic | 20.0% |
| !! | CAACAAAAAAAAATTATGCA+TGG | + | chr4.4:88163720-88163739 | None:intergenic | 20.0% |
| !! | GATAGTAAATTATATCACAA+GGG | - | chr4.4:88164150-88164169 | MS.gene034041:CDS | 20.0% |
| !! | GGTATACAACAATATTATTT+AGG | - | chr4.4:88165549-88165568 | MS.gene034041:intron | 20.0% |
| !! | TCAACTATGAAATAATAAAG+CGG | - | chr4.4:88166203-88166222 | MS.gene034041:CDS | 20.0% |
| !!! | ACTTGACATGAATTTTTTTT+TGG | - | chr4.4:88164369-88164388 | MS.gene034041:intron | 20.0% |
| !!! | AGTTGTTATTTTTTTATAGG+TGG | - | chr4.4:88164267-88164286 | MS.gene034041:intron | 20.0% |
| !!! | ATAGTTGATATTATAAACCA+TGG | + | chr4.4:88163910-88163929 | None:intergenic | 20.0% |
| !!! | ATATCTAAAATTCATTTGTC+AGG | - | chr4.4:88166042-88166061 | MS.gene034041:intron | 20.0% |
| !!! | CTAAAACATCATTTTTATTG+TGG | - | chr4.4:88165371-88165390 | MS.gene034041:intron | 20.0% |
| !!! | TTGCTATTTAACAATAATCA+GGG | - | chr4.4:88165061-88165080 | MS.gene034041:intron | 20.0% |
| !!! | TTTGCTATTTAACAATAATC+AGG | - | chr4.4:88165060-88165079 | MS.gene034041:intron | 20.0% |
| !!! | TTTTTATTTAAGTAGGATGT+TGG | - | chr4.4:88165829-88165848 | MS.gene034041:intron | 20.0% |
| ! | AAAGAAAGGTAATGTAATCA+AGG | + | chr4.4:88163886-88163905 | None:intergenic | 25.0% |
| ! | AAATACTATAGAGCTATGTA+CGG | + | chr4.4:88164812-88164831 | None:intergenic | 25.0% |
| ! | AAGTAGAAACTTAAAGCAAT+CGG | - | chr4.4:88166330-88166349 | MS.gene034041:intron | 25.0% |
| ! | ACATCTTAATATGTGACATT+TGG | - | chr4.4:88165805-88165824 | MS.gene034041:intron | 25.0% |
| ! | AGAAAAACAAAGTTATCATG+TGG | + | chr4.4:88164336-88164355 | None:intergenic | 25.0% |
| ! | ATAACATTCAAATCCTATGA+GGG | - | chr4.4:88166135-88166154 | MS.gene034041:intron | 25.0% |
| ! | CATTTGTATCAATGTTATGT+CGG | + | chr4.4:88165929-88165948 | None:intergenic | 25.0% |
| ! | GTTATATGATGCAGATAAAA+TGG | - | chr4.4:88164871-88164890 | MS.gene034041:intron | 25.0% |
| ! | TACACAATTCTGATTTAGTA+AGG | + | chr4.4:88164997-88165016 | None:intergenic | 25.0% |
| ! | TATAACATTCAAATCCTATG+AGG | - | chr4.4:88166134-88166153 | MS.gene034041:intron | 25.0% |
| ! | TCAAATAGAATCTCAATAGA+AGG | + | chr4.4:88164228-88164247 | None:intergenic | 25.0% |
| ! | TGAGAATACAAACTTACATT+TGG | + | chr4.4:88164641-88164660 | None:intergenic | 25.0% |
| ! | TTATAAACCATGGTAAAGAA+AGG | + | chr4.4:88163900-88163919 | None:intergenic | 25.0% |
| ! | TTTGCAATTGATGTTAATGT+AGG | - | chr4.4:88165688-88165707 | MS.gene034041:intron | 25.0% |
| !! | CTATTTGAGATAAATTCTGT+TGG | - | chr4.4:88164240-88164259 | MS.gene034041:intron | 25.0% |
| !! | TTTATCATCTAGTTTAATCG+TGG | + | chr4.4:88166294-88166313 | None:intergenic | 25.0% |
| !! | TTTTACAACTATATACTCGA+AGG | + | chr4.4:88165590-88165609 | None:intergenic | 25.0% |
| !!! | AGCAATTGTTTTTCACTTTT+TGG | - | chr4.4:88166444-88166463 | MS.gene034041:intron | 25.0% |
| !!! | TATGCTGTATGTTTTTAGTA+TGG | - | chr4.4:88164196-88164215 | MS.gene034041:intron | 25.0% |
| AAAGGAAAATTTCTTGCAAG+GGG | + | chr4.4:88163675-88163694 | None:intergenic | 30.0% | |
| AACCATGCATGTTATCAAAT+GGG | - | chr4.4:88163620-88163639 | MS.gene034041:CDS | 30.0% | |
| AACTGCTAGAAGAACTAATT+TGG | - | chr4.4:88163963-88163982 | MS.gene034041:intron | 30.0% | |
| AATCTTTGGTTGTTTACATG+TGG | - | chr4.4:88165632-88165651 | MS.gene034041:intron | 30.0% | |
| ACAAAAATTACCATTGAGTC+AGG | - | chr4.4:88164461-88164480 | MS.gene034041:intron | 30.0% | |
| ACAATAATCAGGGTTTGATA+TGG | - | chr4.4:88165071-88165090 | MS.gene034041:CDS | 30.0% | |
| ACAGACAAACACATAGATAT+TGG | + | chr4.4:88164787-88164806 | None:intergenic | 30.0% | |
| ACTTGATGCCATATTATTTG+AGG | + | chr4.4:88166564-88166583 | None:intergenic | 30.0% | |
| AGAAAGGAAAATTTCTTGCA+AGG | + | chr4.4:88163677-88163696 | None:intergenic | 30.0% | |
| ATACTTTATATGCCCTTTGA+AGG | - | chr4.4:88163934-88163953 | MS.gene034041:intron | 30.0% | |
| ATAGTGACATACTAATTCCA+TGG | + | chr4.4:88165785-88165804 | None:intergenic | 30.0% | |
| ATTAAAATGACCTGACTCAA+TGG | + | chr4.4:88164474-88164493 | None:intergenic | 30.0% | |
| ATTGTGGTATAGTGAAAGTT+GGG | - | chr4.4:88165387-88165406 | MS.gene034041:intron | 30.0% | |
| CAATAATCAGGGTTTGATAT+GGG | - | chr4.4:88165072-88165091 | MS.gene034041:CDS | 30.0% | |
| CTTGATGCCATATTATTTGA+GGG | + | chr4.4:88166563-88166582 | None:intergenic | 30.0% | |
| GAAAGGAAAATTTCTTGCAA+GGG | + | chr4.4:88163676-88163695 | None:intergenic | 30.0% | |
| GAAGATAACAAACATCCATT+AGG | + | chr4.4:88164529-88164548 | None:intergenic | 30.0% | |
| GATCAAATCAGTGAAATCTT+TGG | - | chr4.4:88166247-88166266 | MS.gene034041:CDS | 30.0% | |
| TAACATTCAAATCCTATGAG+GGG | - | chr4.4:88166136-88166155 | MS.gene034041:intron | 30.0% | |
| TACAAACTTACATTTGGAAG+TGG | + | chr4.4:88164635-88164654 | None:intergenic | 30.0% | |
| TACATTACCTTTCTTTACCA+TGG | - | chr4.4:88163890-88163909 | MS.gene034041:intron | 30.0% | |
| TACTTTATATGCCCTTTGAA+GGG | - | chr4.4:88163935-88163954 | MS.gene034041:intron | 30.0% | |
| TATAGGTGGAAAGCTTAATT+TGG | - | chr4.4:88164281-88164300 | MS.gene034041:intron | 30.0% | |
| TATTGTGGTATAGTGAAAGT+TGG | - | chr4.4:88165386-88165405 | MS.gene034041:intron | 30.0% | |
| TGACAAATTGATCTGATCAT+CGG | - | chr4.4:88166392-88166411 | MS.gene034041:intron | 30.0% | |
| TTACTAAGATTCTGGACTAA+GGG | - | chr4.4:88164309-88164328 | MS.gene034041:intron | 30.0% | |
| ! | AGAAGAACTAATTTGGAGTT+TGG | - | chr4.4:88163970-88163989 | MS.gene034041:intron | 30.0% |
| ! | GCAAATATGTGTTTTCCTAA+TGG | - | chr4.4:88164511-88164530 | MS.gene034041:CDS | 30.0% |
| !! | AGTCAGGTCATTTTAATCTA+TGG | - | chr4.4:88164477-88164496 | MS.gene034041:CDS | 30.0% |
| !!! | TTTGGCTTGTTATTTTGTGT+AGG | - | chr4.4:88166462-88166481 | MS.gene034041:intron | 30.0% |
| AAAAACAAGGAAGGTAGAGA+AGG | - | chr4.4:88166608-88166627 | MS.gene034041:CDS | 35.0% | |
| AACATCAAGCAACTATAGTC+TGG | - | chr4.4:88164022-88164041 | MS.gene034041:intron | 35.0% | |
| AATTGTCACATGAAGCAAGA+AGG | - | chr4.4:88165730-88165749 | MS.gene034041:intron | 35.0% | |
| ACCATGCATGTTATCAAATG+GGG | - | chr4.4:88163621-88163640 | MS.gene034041:CDS | 35.0% | |
| ACTTCTCTCCATATTTGTAG+AGG | + | chr4.4:88166080-88166099 | None:intergenic | 35.0% | |
| ATTGTTGTATACCTTGATCC+TGG | + | chr4.4:88165542-88165561 | None:intergenic | 35.0% | |
| CAAAGATTGTGACTATAGCT+TGG | + | chr4.4:88163765-88163784 | None:intergenic | 35.0% | |
| CATTTGAGCATTCAATGCAA+CGG | + | chr4.4:88165971-88165990 | None:intergenic | 35.0% | |
| CTCAACTTAAGAGCAGTTAT+TGG | - | chr4.4:88165500-88165519 | MS.gene034041:intron | 35.0% | |
| GAACCATGCATGTTATCAAA+TGG | - | chr4.4:88163619-88163638 | MS.gene034041:CDS | 35.0% | |
| GATCAGATCAATTTGTCAGT+TGG | + | chr4.4:88166390-88166409 | None:intergenic | 35.0% | |
| GATGTAGTCCTCTACAAATA+TGG | - | chr4.4:88166069-88166088 | MS.gene034041:intron | 35.0% | |
| GTTACTAAGATTCTGGACTA+AGG | - | chr4.4:88164308-88164327 | MS.gene034041:intron | 35.0% | |
| TCAGTGAAATCTTTGGATCA+TGG | - | chr4.4:88166254-88166273 | MS.gene034041:CDS | 35.0% | |
| TCTCAAGTATGGATGGTAAA+AGG | + | chr4.4:88164664-88164683 | None:intergenic | 35.0% | |
| TCTTTGGATCATGGTTCAAT+TGG | - | chr4.4:88166263-88166282 | MS.gene034041:CDS | 35.0% | |
| TGGAAGAGTTACTAAGATTC+TGG | - | chr4.4:88164301-88164320 | MS.gene034041:intron | 35.0% | |
| TTATACAGTTCCTAGAGAGA+TGG | - | chr4.4:88166493-88166512 | MS.gene034041:intron | 35.0% | |
| ! | AATTGATCTGATCATCGGTT+TGG | - | chr4.4:88166397-88166416 | MS.gene034041:intron | 35.0% |
| ! | GTTGCTTGATGTTTTCCTTT+AGG | + | chr4.4:88164015-88164034 | None:intergenic | 35.0% |
| !!! | CTTGTTATTTTGTGTAGGCT+TGG | - | chr4.4:88166467-88166486 | MS.gene034041:intron | 35.0% |
| AAGGTTTGTGACTGTGATTG+TGG | + | chr4.4:88163867-88163886 | None:intergenic | 40.0% | |
| ACACATGTAGTGAGACCTAA+AGG | - | chr4.4:88163997-88164016 | MS.gene034041:intron | 40.0% | |
| AGACATGCGGAACAAAAACA+AGG | - | chr4.4:88166595-88166614 | MS.gene034041:intron | 40.0% | |
| AGAGCAGTTATTGGACTAAG+TGG | - | chr4.4:88165509-88165528 | MS.gene034041:intron | 40.0% | |
| ATAGTGAAAGTTGGGATTGG+AGG | - | chr4.4:88165395-88165414 | MS.gene034041:intron | 40.0% | |
| ATGCGGAACAAAAACAAGGA+AGG | - | chr4.4:88166599-88166618 | MS.gene034041:intron | 40.0% | |
| ATGGGAGAACTATCAGATGA+TGG | - | chr4.4:88165090-88165109 | MS.gene034041:CDS | 40.0% | |
| ATTCCATGGCTCAGAAAAAC+TGG | + | chr4.4:88165771-88165790 | None:intergenic | 40.0% | |
| CAATTGATGTAGCCGAAATG+TGG | - | chr4.4:88163811-88163830 | MS.gene034041:intron | 40.0% | |
| CCATCCATACTTGAGATTGA+AGG | - | chr4.4:88164668-88164687 | MS.gene034041:intron | 40.0% | |
| CCTTCAATCTCAAGTATGGA+TGG | + | chr4.4:88164671-88164690 | None:intergenic | 40.0% | |
| CTGATCAGAATGATGACATC+CGG | - | chr4.4:88165294-88165313 | MS.gene034041:intron | 40.0% | |
| GGTATAGTGAAAGTTGGGAT+TGG | - | chr4.4:88165392-88165411 | MS.gene034041:intron | 40.0% | |
| GTCATGTTGTAGAAGACATG+CGG | - | chr4.4:88166582-88166601 | MS.gene034041:intron | 40.0% | |
| TAACGTCTGTGACCACATTT+CGG | + | chr4.4:88163826-88163845 | None:intergenic | 40.0% | |
| TTGGAAGTGGAAGTGATTCA+AGG | + | chr4.4:88164622-88164641 | None:intergenic | 40.0% | |
| TTGTGACTATAGCTTGGCTA+AGG | + | chr4.4:88163759-88163778 | None:intergenic | 40.0% | |
| ! | ACCCCATTTGATAACATGCA+TGG | + | chr4.4:88163625-88163644 | None:intergenic | 40.0% |
| ! | AGATGATGGTCCAGATGATT+GGG | - | chr4.4:88165104-88165123 | MS.gene034041:CDS | 40.0% |
| ! | ATTTGCAATATGTGCTGCTG+AGG | + | chr4.4:88165142-88165161 | None:intergenic | 40.0% |
| ! | GGAGATAATGGTTTGAGGTA+TGG | - | chr4.4:88164057-88164076 | MS.gene034041:intron | 40.0% |
| ! | GTCAGTTGGTTCAAGTCTAA+TGG | + | chr4.4:88166376-88166395 | None:intergenic | 40.0% |
| ! | GTCTTGGAGATAATGGTTTG+AGG | - | chr4.4:88164052-88164071 | MS.gene034041:intron | 40.0% |
| ! | TGTGTATTCAGAAAGCGTAG+TGG | - | chr4.4:88166001-88166020 | MS.gene034041:intron | 40.0% |
| ! | TTACCAGTTTTTCTGAGCCA+TGG | - | chr4.4:88165765-88165784 | MS.gene034041:intron | 40.0% |
| !!! | TCTGCAACTTGTTTTGCCAT+GGG | - | chr4.4:88165449-88165468 | MS.gene034041:intron | 40.0% |
| !!! | TTCTGCAACTTGTTTTGCCA+TGG | - | chr4.4:88165448-88165467 | MS.gene034041:intron | 40.0% |
| AAAAAAGGCTCACCCCTCAT+AGG | + | chr4.4:88166151-88166170 | None:intergenic | 45.0% | |
| AAGCCACCAAGTATAGCTAC+AGG | + | chr4.4:88164921-88164940 | None:intergenic | 45.0% | |
| AATCACGAGAACAATCGCAC+CGG | + | chr4.4:88165316-88165335 | None:intergenic | 45.0% | |
| ACCAAGTATAGCTACAGGTC+GGG | + | chr4.4:88164916-88164935 | None:intergenic | 45.0% | |
| AGATGGCTGAAGTCTCCAAT+TGG | - | chr4.4:88166510-88166529 | MS.gene034041:intron | 45.0% | |
| CACCAAGTATAGCTACAGGT+CGG | + | chr4.4:88164917-88164936 | None:intergenic | 45.0% | |
| CACGCCTTCAATCTCAAGTA+TGG | + | chr4.4:88164675-88164694 | None:intergenic | 45.0% | |
| CAGTTATTGGACTAAGTGGC+TGG | - | chr4.4:88165513-88165532 | MS.gene034041:intron | 45.0% | |
| CGGATGTCATCATTCTGATC+AGG | + | chr4.4:88165296-88165315 | None:intergenic | 45.0% | |
| CTCAAACCTTGTGTTCAGCA+GGG | - | chr4.4:88166103-88166122 | MS.gene034041:intron | 45.0% | |
| GCATGTTATCAAATGGGGTC+TGG | - | chr4.4:88163626-88163645 | MS.gene034041:CDS | 45.0% | |
| TCTAAACCCTCCCAATCATC+TGG | + | chr4.4:88165117-88165136 | None:intergenic | 45.0% | |
| TGGGGGACCCTCAAATAATA+TGG | - | chr4.4:88166553-88166572 | MS.gene034041:intron | 45.0% | |
| TTGAAACCCTGCTGAACACA+AGG | + | chr4.4:88166112-88166131 | None:intergenic | 45.0% | |
| ! | CAGATGATGGTCCAGATGAT+TGG | - | chr4.4:88165103-88165122 | MS.gene034041:CDS | 45.0% |
| ! | CTGCATGGTCTTGGAGATAA+TGG | - | chr4.4:88164045-88164064 | MS.gene034041:intron | 45.0% |
| ! | TATATGCCCTTTGAAGGGAG+TGG | - | chr4.4:88163940-88163959 | MS.gene034041:intron | 45.0% |
| ! | TATCAAATGGGGTCTGGTTC+TGG | - | chr4.4:88163632-88163651 | MS.gene034041:CDS | 45.0% |
| ! | TGTTTTGCCATGGGAAGGTA+TGG | - | chr4.4:88165458-88165477 | MS.gene034041:intron | 45.0% |
| !! | CTCTTAAGTTGAGACTGCAG+GGG | + | chr4.4:88165493-88165512 | None:intergenic | 45.0% |
| !! | GCTCTTAAGTTGAGACTGCA+GGG | + | chr4.4:88165494-88165513 | None:intergenic | 45.0% |
| !! | GTTTGTTGTCCGACATGTGT+GGG | - | chr4.4:88165900-88165919 | MS.gene034041:intron | 45.0% |
| !! | TGCTCTTAAGTTGAGACTGC+AGG | + | chr4.4:88165495-88165514 | None:intergenic | 45.0% |
| !! | TGTTTGTTGTCCGACATGTG+TGG | - | chr4.4:88165899-88165918 | MS.gene034041:intron | 45.0% |
| !!! | CAACTTGTTTTGCCATGGGA+AGG | - | chr4.4:88165453-88165472 | MS.gene034041:intron | 45.0% |
| ACCCGACCTGTAGCTATACT+TGG | - | chr4.4:88164912-88164931 | MS.gene034041:intron | 50.0% | |
| AGCAGTTCCACTCCCTTCAA+AGG | + | chr4.4:88163950-88163969 | None:intergenic | 50.0% | |
| AGTATAGCTACAGGTCGGGT+AGG | + | chr4.4:88164912-88164931 | None:intergenic | 50.0% | |
| ATAGTCTGGCTGCATGGTCT+TGG | - | chr4.4:88164036-88164055 | MS.gene034041:intron | 50.0% | |
| CGACCTGTAGCTATACTTGG+TGG | - | chr4.4:88164915-88164934 | MS.gene034041:intron | 50.0% | |
| GAGACTTCAGCCATCTCTCT+AGG | + | chr4.4:88166506-88166525 | None:intergenic | 50.0% | |
| GATGGTCCAGATGATTGGGA+GGG | - | chr4.4:88165108-88165127 | MS.gene034041:CDS | 50.0% | |
| GCAACTATAGTCTGGCTGCA+TGG | - | chr4.4:88164030-88164049 | MS.gene034041:intron | 50.0% | |
| GCAGTTCCACTCCCTTCAAA+GGG | + | chr4.4:88163949-88163968 | None:intergenic | 50.0% | |
| GCCAGCTGATGGTACTTTCA+AGG | - | chr4.4:88165176-88165195 | MS.gene034041:intron | 50.0% | |
| GCCATTTCCATACCTTCCCA+TGG | + | chr4.4:88165468-88165487 | None:intergenic | 50.0% | |
| GCTCAAACCTTGTGTTCAGC+AGG | - | chr4.4:88166102-88166121 | MS.gene034041:intron | 50.0% | |
| GCTGAAGTCTCCAATTGGCT+TGG | - | chr4.4:88166515-88166534 | MS.gene034041:intron | 50.0% | |
| GGGATTGGAGGCTTCAGTAT+GGG | - | chr4.4:88165407-88165426 | MS.gene034041:intron | 50.0% | |
| TGATGGTCCAGATGATTGGG+AGG | - | chr4.4:88165107-88165126 | MS.gene034041:CDS | 50.0% | |
| TGGGATTGGAGGCTTCAGTA+TGG | - | chr4.4:88165406-88165425 | MS.gene034041:intron | 50.0% | |
| TGTGACTGTGATTGTGGTCG+CGG | + | chr4.4:88163861-88163880 | None:intergenic | 50.0% | |
| TTGTCAACTGAGCCAGCTGA+TGG | - | chr4.4:88165165-88165184 | MS.gene034041:intron | 50.0% | |
| ! | GCCATGGGAAGGTATGGAAA+TGG | - | chr4.4:88165464-88165483 | MS.gene034041:intron | 50.0% |
| !! | AATTGGCTTGGCTCATGCCT+GGG | - | chr4.4:88166527-88166546 | MS.gene034041:intron | 50.0% |
| !! | GCCTTGAAAGTACCATCAGC+TGG | + | chr4.4:88165180-88165199 | None:intergenic | 50.0% |
| !! | TTAAGTTGAGACTGCAGGGG+AGG | + | chr4.4:88165490-88165509 | None:intergenic | 50.0% |
| CAGGCATGAGCCAAGCCAAT+TGG | + | chr4.4:88166528-88166547 | None:intergenic | 55.0% | |
| ! | TGTCGGTGTCCCACACATGT+CGG | + | chr4.4:88165912-88165931 | None:intergenic | 55.0% |
| !! | ATTGGCTTGGCTCATGCCTG+GGG | - | chr4.4:88166528-88166547 | MS.gene034041:intron | 55.0% |
| !! | CAATTGGCTTGGCTCATGCC+TGG | - | chr4.4:88166526-88166545 | MS.gene034041:intron | 55.0% |
| ACAGGTCGGGTAGGAGCAGT+TGG | + | chr4.4:88164903-88164922 | None:intergenic | 60.0% | |
| CAGGTCGGGTAGGAGCAGTT+GGG | + | chr4.4:88164902-88164921 | None:intergenic | 60.0% | |
| TTGGCTCATGCCTGGGGCTT+GGG | - | chr4.4:88166534-88166553 | MS.gene034041:intron | 60.0% | |
| !! | GGACTAAGTGGCTGGCTTCC+AGG | - | chr4.4:88165521-88165540 | MS.gene034041:intron | 60.0% |
| !! | GTGGCTGGCTTCCAGGATCA+AGG | - | chr4.4:88165528-88165547 | MS.gene034041:intron | 60.0% |
| CTTGGCTCATGCCTGGGGCT+TGG | - | chr4.4:88166533-88166552 | MS.gene034041:intron | 65.0% | |
| TGGCTCATGCCTGGGGCTTG+GGG | - | chr4.4:88166535-88166554 | MS.gene034041:intron | 65.0% | |
| GGCTCATGCCTGGGGCTTGG+GGG | - | chr4.4:88166536-88166555 | MS.gene034041:intron | 70.0% | |
| TTGAGGGTCCCCCAAGCCCC+AGG | + | chr4.4:88166547-88166566 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 88163617 | 88166637 | 88163617 | ID=MS.gene034041 |
| chr4.4 | mRNA | 88163617 | 88166637 | 88163617 | ID=MS.gene034041.t1;Parent=MS.gene034041 |
| chr4.4 | exon | 88166601 | 88166637 | 88166601 | ID=MS.gene034041.t1.exon1;Parent=MS.gene034041.t1 |
| chr4.4 | CDS | 88166601 | 88166637 | 88166601 | ID=cds.MS.gene034041.t1;Parent=MS.gene034041.t1 |
| chr4.4 | exon | 88166181 | 88166298 | 88166181 | ID=MS.gene034041.t1.exon2;Parent=MS.gene034041.t1 |
| chr4.4 | CDS | 88166181 | 88166298 | 88166181 | ID=cds.MS.gene034041.t1;Parent=MS.gene034041.t1 |
| chr4.4 | exon | 88165611 | 88165647 | 88165611 | ID=MS.gene034041.t1.exon3;Parent=MS.gene034041.t1 |
| chr4.4 | CDS | 88165611 | 88165647 | 88165611 | ID=cds.MS.gene034041.t1;Parent=MS.gene034041.t1 |
| chr4.4 | exon | 88165300 | 88165369 | 88165300 | ID=MS.gene034041.t1.exon4;Parent=MS.gene034041.t1 |
| chr4.4 | CDS | 88165300 | 88165369 | 88165300 | ID=cds.MS.gene034041.t1;Parent=MS.gene034041.t1 |
| chr4.4 | exon | 88165068 | 88165172 | 88165068 | ID=MS.gene034041.t1.exon5;Parent=MS.gene034041.t1 |
| chr4.4 | CDS | 88165068 | 88165172 | 88165068 | ID=cds.MS.gene034041.t1;Parent=MS.gene034041.t1 |
| chr4.4 | exon | 88164705 | 88164855 | 88164705 | ID=MS.gene034041.t1.exon6;Parent=MS.gene034041.t1 |
| chr4.4 | CDS | 88164705 | 88164855 | 88164705 | ID=cds.MS.gene034041.t1;Parent=MS.gene034041.t1 |
| chr4.4 | exon | 88164462 | 88164544 | 88164462 | ID=MS.gene034041.t1.exon7;Parent=MS.gene034041.t1 |
| chr4.4 | CDS | 88164462 | 88164544 | 88164462 | ID=cds.MS.gene034041.t1;Parent=MS.gene034041.t1 |
| chr4.4 | exon | 88164097 | 88164190 | 88164097 | ID=MS.gene034041.t1.exon8;Parent=MS.gene034041.t1 |
| chr4.4 | CDS | 88164097 | 88164190 | 88164097 | ID=cds.MS.gene034041.t1;Parent=MS.gene034041.t1 |
| chr4.4 | exon | 88163617 | 88163770 | 88163617 | ID=MS.gene034041.t1.exon9;Parent=MS.gene034041.t1 |
| chr4.4 | CDS | 88163617 | 88163770 | 88163617 | ID=cds.MS.gene034041.t1;Parent=MS.gene034041.t1 |
| Gene Sequence |
| Protein sequence |
