Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89061.t1 | XP_024631716.1 | 99.2 | 257 | 2 | 0 | 1 | 257 | 1 | 257 | 6.00E-147 | 530 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89061.t1 | O95372 | 37.2 | 226 | 116 | 7 | 32 | 250 | 22 | 228 | 2.3e-30 | 134.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89061.t1 | G7IMH6 | 99.2 | 257 | 2 | 0 | 1 | 257 | 1 | 257 | 4.3e-147 | 530.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene067343 | MS.gene89061 | PPI |
| MS.gene038854 | MS.gene89061 | PPI |
| MS.gene83338 | MS.gene89061 | PPI |
| MS.gene79485 | MS.gene89061 | PPI |
| MS.gene86352 | MS.gene89061 | PPI |
| MS.gene36243 | MS.gene89061 | PPI |
| MS.gene034041 | MS.gene89061 | PPI |
| MS.gene37311 | MS.gene89061 | PPI |
| MS.gene89061 | MS.gene37311 | PPI |
| MS.gene89061 | MS.gene86352 | PPI |
| MS.gene026794 | MS.gene89061 | PPI |
| MS.gene034040 | MS.gene89061 | PPI |
| MS.gene067344 | MS.gene89061 | PPI |
| MS.gene034042 | MS.gene89061 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89061.t1 | MTR_2g103140 | 99.222 | 257 | 2 | 0 | 1 | 257 | 1 | 257 | 0.0 | 522 |
| MS.gene89061.t1 | MTR_4g011320 | 84.496 | 258 | 39 | 1 | 1 | 257 | 1 | 258 | 1.70e-158 | 441 |
| MS.gene89061.t1 | MTR_2g054780 | 68.110 | 254 | 79 | 1 | 1 | 254 | 1 | 252 | 9.04e-131 | 370 |
| MS.gene89061.t1 | MTR_3g107630 | 70.293 | 239 | 71 | 0 | 17 | 255 | 17 | 255 | 3.00e-123 | 351 |
| MS.gene89061.t1 | MTR_2g054780 | 65.748 | 254 | 78 | 2 | 1 | 254 | 1 | 245 | 5.67e-123 | 350 |
| MS.gene89061.t1 | MTR_4g132890 | 30.045 | 223 | 129 | 7 | 37 | 250 | 7 | 211 | 4.21e-21 | 88.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89061.t1 | AT1G52700 | 76.772 | 254 | 58 | 1 | 1 | 254 | 1 | 253 | 2.54e-141 | 397 |
| MS.gene89061.t1 | AT1G52700 | 76.772 | 254 | 58 | 1 | 1 | 254 | 1 | 253 | 2.54e-141 | 397 |
| MS.gene89061.t1 | AT3G15650 | 72.527 | 273 | 55 | 2 | 1 | 254 | 1 | 272 | 4.75e-138 | 389 |
| MS.gene89061.t1 | AT1G52700 | 77.869 | 244 | 53 | 1 | 11 | 254 | 2 | 244 | 6.68e-137 | 385 |
| MS.gene89061.t1 | AT3G15650 | 77.953 | 254 | 55 | 1 | 1 | 254 | 1 | 253 | 1.90e-133 | 377 |
| MS.gene89061.t1 | AT3G15650 | 78.947 | 247 | 51 | 1 | 8 | 254 | 18 | 263 | 2.30e-130 | 369 |
| MS.gene89061.t1 | AT5G20060 | 66.929 | 254 | 82 | 2 | 1 | 254 | 1 | 252 | 7.29e-130 | 368 |
| MS.gene89061.t1 | AT5G20060 | 66.929 | 254 | 82 | 2 | 1 | 254 | 1 | 252 | 7.29e-130 | 368 |
| MS.gene89061.t1 | AT5G20060 | 66.929 | 254 | 82 | 2 | 1 | 254 | 1 | 252 | 7.29e-130 | 368 |
| MS.gene89061.t1 | AT5G20060 | 66.929 | 254 | 82 | 2 | 1 | 254 | 1 | 252 | 7.29e-130 | 368 |
| MS.gene89061.t1 | AT1G52700 | 77.612 | 201 | 45 | 0 | 54 | 254 | 1 | 201 | 3.07e-111 | 319 |
| MS.gene89061.t1 | AT1G52700 | 78.061 | 196 | 42 | 1 | 1 | 196 | 1 | 195 | 7.66e-109 | 313 |
| MS.gene89061.t1 | AT1G52700 | 78.061 | 196 | 42 | 1 | 1 | 196 | 1 | 195 | 7.66e-109 | 313 |
| MS.gene89061.t1 | AT1G51300 | 45.228 | 241 | 124 | 2 | 16 | 254 | 30 | 264 | 6.91e-69 | 214 |
| MS.gene89061.t1 | AT1G51300 | 46.009 | 213 | 107 | 2 | 16 | 226 | 30 | 236 | 6.72e-62 | 196 |
| MS.gene89061.t1 | AT1G52695 | 43.830 | 235 | 117 | 5 | 19 | 252 | 11 | 231 | 2.45e-56 | 180 |
| MS.gene89061.t1 | AT1G51300 | 46.429 | 168 | 82 | 2 | 16 | 181 | 19 | 180 | 5.65e-46 | 152 |
| MS.gene89061.t1 | AT1G52470 | 37.946 | 224 | 121 | 5 | 9 | 232 | 3 | 208 | 2.70e-38 | 134 |
| MS.gene89061.t1 | AT1G52460 | 39.574 | 235 | 109 | 7 | 26 | 253 | 13 | 221 | 1.43e-37 | 132 |
| MS.gene89061.t1 | AT1G47786 | 46.296 | 162 | 74 | 4 | 14 | 170 | 33 | 186 | 3.62e-37 | 129 |
| MS.gene89061.t1 | AT1G52470 | 37.436 | 195 | 104 | 4 | 9 | 203 | 3 | 179 | 1.57e-32 | 117 |
| MS.gene89061.t1 | AT1G52470 | 38.298 | 188 | 98 | 4 | 9 | 196 | 3 | 172 | 1.72e-32 | 117 |
| MS.gene89061.t1 | AT1G52440 | 35.622 | 233 | 92 | 6 | 26 | 253 | 17 | 196 | 1.21e-30 | 113 |
| MS.gene89061.t1 | AT1G47780 | 52.727 | 110 | 49 | 1 | 61 | 170 | 23 | 129 | 3.00e-26 | 99.8 |
| MS.gene89061.t1 | AT4G22300 | 31.839 | 223 | 125 | 7 | 37 | 250 | 51 | 255 | 7.17e-24 | 97.1 |
| MS.gene89061.t1 | AT4G22305 | 31.390 | 223 | 126 | 7 | 37 | 250 | 6 | 210 | 1.64e-21 | 90.1 |
Find 80 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTCTTAAATTGACAGGATA+TGG | 0.177168 | 2.4:+2182852 | None:intergenic |
| GGACTCAGTGGTTGGCTTCC+AGG | 0.228261 | 2.4:-2182822 | MS.gene89061:CDS |
| ATGATATGATACAGATAAAA+TGG | 0.253421 | 2.4:-2183406 | MS.gene89061:intron |
| ATTCCGTGACACTGTAAAAT+TGG | 0.284885 | 2.4:+2182603 | None:intergenic |
| CTGCAGCTCATCTCAGTTGT+TGG | 0.306667 | 2.4:-2183584 | MS.gene89061:intron |
| GATTTCATCTTACCCTTCAT+AGG | 0.341429 | 2.4:+2182145 | None:intergenic |
| CAGAAGATGGTCCAGATGAT+TGG | 0.348652 | 2.4:-2183211 | MS.gene89061:CDS |
| AACATCAAGCTACTATAGTT+TGG | 0.349013 | 2.4:-2184284 | MS.gene89061:CDS |
| ACTCGACGAACTTTCGAATT+CGG | 0.359043 | 2.4:-2184336 | MS.gene89061:CDS |
| CTCGACGAACTTTCGAATTC+GGG | 0.362164 | 2.4:-2184335 | MS.gene89061:CDS |
| TCCAGATGATTGGGAGGGTT+TGG | 0.362266 | 2.4:-2183201 | MS.gene89061:CDS |
| ACCCGTCCCGTGGCGATACT+TGG | 0.362645 | 2.4:-2183365 | MS.gene89061:CDS |
| ACCTGGCTTAGTTCAAGGTT+GGG | 0.374896 | 2.4:-2182007 | MS.gene89061:CDS |
| TCGAAACCCTGCTGAACTTA+AGG | 0.379498 | 2.4:+2182184 | None:intergenic |
| AGATTTCTCTCCATACTTGC+AGG | 0.384767 | 2.4:+2182214 | None:intergenic |
| CTGCTATCGTGTAGGAGCTT+AGG | 0.385731 | 2.4:-2182675 | MS.gene89061:intron |
| TTGCATGGACTTGGTGATAA+TGG | 0.386499 | 2.4:-2184261 | MS.gene89061:CDS |
| TGCTATCGTGTAGGAGCTTA+GGG | 0.407200 | 2.4:-2182674 | MS.gene89061:intron |
| TTTCCACCTGGCTTAGTTCA+AGG | 0.409660 | 2.4:-2182012 | MS.gene89061:CDS |
| CACCTGGCTTAGTTCAAGGT+TGG | 0.410510 | 2.4:-2182008 | MS.gene89061:CDS |
| GGCATTGGAGGGTTCAGCAT+GGG | 0.423064 | 2.4:-2182936 | MS.gene89061:CDS |
| GTCAATTTAAGAGCAGTTGT+TGG | 0.432143 | 2.4:-2182843 | MS.gene89061:CDS |
| TCCAAACCCTCCCAATCATC+TGG | 0.433424 | 2.4:+2183200 | None:intergenic |
| AGAAGATGGTCCAGATGATT+GGG | 0.441840 | 2.4:-2183210 | MS.gene89061:CDS |
| GCTCAATCCTTAAGTTCAGC+AGG | 0.445139 | 2.4:-2182191 | MS.gene89061:CDS |
| GATGTAGTACCCTGCAAGTA+TGG | 0.451238 | 2.4:-2182224 | MS.gene89061:CDS |
| GAAACTTCACCCATCTCTCT+TGG | 0.455198 | 2.4:+2182031 | None:intergenic |
| TGCTATGCCATGGGAAGGTA+TGG | 0.455698 | 2.4:-2182885 | MS.gene89061:CDS |
| AGTTCAAGGTTGGGACTTGA+AGG | 0.458085 | 2.4:-2181998 | MS.gene89061:CDS |
| AGTCACGCGCATTCTCATAT+CGG | 0.472684 | 2.4:-2184832 | MS.gene89061:CDS |
| ACGGGACGGGTAGGAGCAGT+AGG | 0.474505 | 2.4:+2183377 | None:intergenic |
| GTTGCATTCAAATCCTATGA+AGG | 0.479609 | 2.4:-2182158 | MS.gene89061:CDS |
| ATAGTTTGGTTGCATGGACT+TGG | 0.482576 | 2.4:-2184270 | MS.gene89061:CDS |
| CTCTTAAATTGACAGGATAT+GGG | 0.492207 | 2.4:+2182853 | None:intergenic |
| AATATAGGATACCTTGATCC+TGG | 0.497671 | 2.4:+2182804 | None:intergenic |
| GCCATGGGAAGGTATGGAAA+TGG | 0.499012 | 2.4:-2182879 | MS.gene89061:CDS |
| TGGCATTGGAGGGTTCAGCA+TGG | 0.500431 | 2.4:-2182937 | MS.gene89061:CDS |
| GCTACTATAGTTTGGTTGCA+TGG | 0.500682 | 2.4:-2184276 | MS.gene89061:CDS |
| GCGCATTCTCATATCGGCTC+TGG | 0.502067 | 2.4:-2184826 | MS.gene89061:intron |
| AATATTCTTACATTTGGAAG+TGG | 0.504794 | 2.4:+2183553 | None:intergenic |
| ACCAAGTATCGCCACGGGAC+GGG | 0.505652 | 2.4:+2183364 | None:intergenic |
| ACAACTGCTCTTAAATTGAC+AGG | 0.511596 | 2.4:+2182846 | None:intergenic |
| ACAGTGAAGGTTGGCATTGG+AGG | 0.514761 | 2.4:-2182948 | MS.gene89061:intron |
| GTGGTTGGCTTCCAGGATCA+AGG | 0.515697 | 2.4:-2182815 | MS.gene89061:intron |
| CAGTTGTTGGACTCAGTGGT+TGG | 0.515891 | 2.4:-2182830 | MS.gene89061:CDS |
| GAAAAGTACCAACCATCTGC+TGG | 0.518011 | 2.4:+2183137 | None:intergenic |
| CTCTGCAACATGCTATGCCA+TGG | 0.520478 | 2.4:-2182895 | MS.gene89061:CDS |
| ACACATGTAGTGAGGCCTAA+AGG | 0.529217 | 2.4:-2184309 | MS.gene89061:CDS |
| TCCCAACCTTGAACTAAGCC+AGG | 0.530276 | 2.4:+2182006 | None:intergenic |
| CGTCCCGTGGCGATACTTGG+TGG | 0.534524 | 2.4:-2183362 | MS.gene89061:CDS |
| ATCTGCAGGGTTTGATGTGG+GGG | 0.542921 | 2.4:-2183240 | MS.gene89061:intron |
| TAATCTGCAGGGTTTGATGT+GGG | 0.550311 | 2.4:-2183242 | MS.gene89061:intron |
| CAGTGAAGGTTGGCATTGGA+GGG | 0.550934 | 2.4:-2182947 | MS.gene89061:CDS |
| CTCAATCCTTAAGTTCAGCA+GGG | 0.560404 | 2.4:-2182190 | MS.gene89061:CDS |
| TACACAGTTCCAAGAGAGAT+GGG | 0.566504 | 2.4:-2182040 | MS.gene89061:CDS |
| GCCATTTCCATACCTTCCCA+TGG | 0.566957 | 2.4:+2182878 | None:intergenic |
| CACCAAGTATCGCCACGGGA+CGG | 0.567381 | 2.4:+2183363 | None:intergenic |
| TTGCATTCAAATCCTATGAA+GGG | 0.567894 | 2.4:-2182157 | MS.gene89061:intron |
| GTGACAGTGAAGGTTGGCAT+TGG | 0.569578 | 2.4:-2182951 | MS.gene89061:intron |
| AGAGCAGTTGTTGGACTCAG+TGG | 0.571266 | 2.4:-2182834 | MS.gene89061:CDS |
| TTGTCAACAGAGCCAGCAGA+TGG | 0.578833 | 2.4:-2183149 | MS.gene89061:intron |
| GACTTGGTGATAATGGTTTG+AGG | 0.581699 | 2.4:-2184254 | MS.gene89061:intron |
| ATAATCTGCAGGGTTTGATG+TGG | 0.583692 | 2.4:-2183243 | MS.gene89061:intron |
| TTACACAGTTCCAAGAGAGA+TGG | 0.585012 | 2.4:-2182041 | MS.gene89061:CDS |
| AATCTGCAGGGTTTGATGTG+GGG | 0.587059 | 2.4:-2183241 | MS.gene89061:intron |
| CGGGACGGGTAGGAGCAGTA+GGG | 0.588956 | 2.4:+2183378 | None:intergenic |
| GATTTCTCTCCATACTTGCA+GGG | 0.589604 | 2.4:+2182215 | None:intergenic |
| TACTGCTCCTACCCGTCCCG+TGG | 0.594923 | 2.4:-2183375 | MS.gene89061:CDS |
| AAGTGTCACATGAAGCGAGA+AGG | 0.615847 | 2.4:-2182641 | MS.gene89061:CDS |
| TCTGCAACATGCTATGCCAT+GGG | 0.616412 | 2.4:-2182894 | MS.gene89061:CDS |
| AGTATCGCCACGGGACGGGT+AGG | 0.617013 | 2.4:+2183368 | None:intergenic |
| CAACATGCTATGCCATGGGA+AGG | 0.620791 | 2.4:-2182890 | MS.gene89061:CDS |
| AGATGGTCCAGATGATTGGG+AGG | 0.628482 | 2.4:-2183207 | MS.gene89061:CDS |
| TATTATGTGACAGTGAAGGT+TGG | 0.630244 | 2.4:-2182957 | MS.gene89061:intron |
| AGATGGGTGAAGTTTCCACC+TGG | 0.640732 | 2.4:-2182024 | MS.gene89061:CDS |
| AAAACCACCAAGTATCGCCA+CGG | 0.640799 | 2.4:+2183358 | None:intergenic |
| GATGGTCCAGATGATTGGGA+GGG | 0.647020 | 2.4:-2183206 | MS.gene89061:CDS |
| AAACCACCAAGTATCGCCAC+GGG | 0.651184 | 2.4:+2183359 | None:intergenic |
| TCGGGAAGACACATGTAGTG+AGG | 0.680314 | 2.4:-2184317 | MS.gene89061:CDS |
| CAACCTTGAACTAAGCCAGG+TGG | 0.690014 | 2.4:+2182009 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATAAATATTCTTACATT+TGG | + | chr2.4:2183276-2183295 | None:intergenic | 10.0% |
| !!! | TCAAAATATTATTTTAGTTA+TGG | + | chr2.4:2183355-2183374 | None:intergenic | 10.0% |
| !! | AAAGAATATGAACTATATTA+GGG | - | chr2.4:2182845-2182864 | MS.gene89061:CDS | 15.0% |
| !! | AAATAGTAGTGTTATAATAT+AGG | + | chr2.4:2184034-2184053 | None:intergenic | 15.0% |
| !! | CAAAAAATTTATAGCATATT+TGG | - | chr2.4:2184493-2184512 | MS.gene89061:intron | 15.0% |
| !! | GATAAGAGAAAATAATAAAA+TGG | + | chr2.4:2182035-2182054 | None:intergenic | 15.0% |
| !! | TATATAATATGAATAGAAAC+TGG | - | chr2.4:2183027-2183046 | MS.gene89061:intron | 15.0% |
| !!! | ATAACACATTAACATTTTTT+TGG | - | chr2.4:2183801-2183820 | MS.gene89061:intron | 15.0% |
| !! | AAAGTTGTGATTATAATTGT+TGG | - | chr2.4:2182944-2182963 | MS.gene89061:CDS | 20.0% |
| !! | AAGAATATGAACTATATTAG+GGG | - | chr2.4:2182846-2182865 | MS.gene89061:CDS | 20.0% |
| !! | AATTTATAGCATATTTGGAA+TGG | - | chr2.4:2184498-2184517 | MS.gene89061:intron | 20.0% |
| !! | ACAAAGAAAAACAGAAATAT+TGG | + | chr2.4:2182757-2182776 | None:intergenic | 20.0% |
| !! | ATAGTAATAATAGTAGCAAA+AGG | + | chr2.4:2184526-2184545 | None:intergenic | 20.0% |
| !! | ATGAAAGATAAAACCATTAT+GGG | - | chr2.4:2182822-2182841 | MS.gene89061:CDS | 20.0% |
| !! | ATGATATGATACAGATAAAA+TGG | - | chr2.4:2183414-2183433 | MS.gene89061:intron | 20.0% |
| !! | GAAAGAATATGAACTATATT+AGG | - | chr2.4:2182844-2182863 | MS.gene89061:CDS | 20.0% |
| !! | TACTTAAAACATTCAACATA+AGG | + | chr2.4:2182876-2182895 | None:intergenic | 20.0% |
| !! | TATGAAAGATAAAACCATTA+TGG | - | chr2.4:2182821-2182840 | MS.gene89061:CDS | 20.0% |
| !! | TCTTATATACTGATATAACT+AGG | - | chr2.4:2184257-2184276 | MS.gene89061:CDS | 20.0% |
| !! | TTAATTGATGTCAGATTTAA+TGG | - | chr2.4:2183174-2183193 | MS.gene89061:CDS | 20.0% |
| !!! | ATGGTTTTATCTTTCATATA+CGG | + | chr2.4:2182819-2182838 | None:intergenic | 20.0% |
| !!! | ATGTTAGACAATTTTTATCT+GGG | - | chr2.4:2183140-2183159 | MS.gene89061:intron | 20.0% |
| !!! | ATTTTTTTGGACCTTAATTA+AGG | - | chr2.4:2183814-2183833 | MS.gene89061:intron | 20.0% |
| !!! | TATGTTAGACAATTTTTATC+TGG | - | chr2.4:2183139-2183158 | MS.gene89061:intron | 20.0% |
| !!! | TCAATTACATGATCTTTTTT+TGG | - | chr2.4:2182242-2182261 | MS.gene89061:intron | 20.0% |
| ! | AAAAGATCATGTAATTGACT+TGG | + | chr2.4:2182240-2182259 | None:intergenic | 25.0% |
| ! | AATATTCTTACATTTGGAAG+TGG | + | chr2.4:2183270-2183289 | None:intergenic | 25.0% |
| ! | ATTATCTTAAATGCTTCTCT+AGG | - | chr2.4:2183315-2183334 | MS.gene89061:intron | 25.0% |
| ! | CTAAACAAGTCTAATTAACT+TGG | - | chr2.4:2183544-2183563 | MS.gene89061:intron | 25.0% |
| ! | TCAGTTTCACAATAATCATT+TGG | - | chr2.4:2184107-2184126 | MS.gene89061:intron | 25.0% |
| !! | AAACATGCTTATCTGATTTT+TGG | - | chr2.4:2183201-2183220 | MS.gene89061:CDS | 25.0% |
| !! | ATTGATAACAATCCTTCAAA+CGG | + | chr2.4:2182364-2182383 | None:intergenic | 25.0% |
| !! | TCTTTCTTGTTTACAATTAC+AGG | - | chr2.4:2182451-2182470 | MS.gene89061:intron | 25.0% |
| !! | TCTTTTGTCAATACTCATAT+AGG | + | chr2.4:2183006-2183025 | None:intergenic | 25.0% |
| !!! | ATTCTTTGTTGTTTTTAGTG+TGG | - | chr2.4:2183064-2183083 | MS.gene89061:intron | 25.0% |
| !!! | TTAAGTATTGAAGTTCTTTC+TGG | - | chr2.4:2182889-2182908 | MS.gene89061:CDS | 25.0% |
| AAAGAGAAAAGGAAAAAGAG+AGG | + | chr2.4:2182721-2182740 | None:intergenic | 30.0% | |
| AAATCAGATAAGCATGTTTC+TGG | + | chr2.4:2183200-2183219 | None:intergenic | 30.0% | |
| AACATCAAGCTACTATAGTT+TGG | - | chr2.4:2182536-2182555 | MS.gene89061:intron | 30.0% | |
| AAGTACAAAACAGAACAAGT+AGG | + | chr2.4:2182681-2182700 | None:intergenic | 30.0% | |
| ACATATAGCAGTGTTAGAAA+GGG | + | chr2.4:2182604-2182623 | None:intergenic | 30.0% | |
| ACCGTACAATCTCATATTAA+CGG | - | chr2.4:2184363-2184382 | MS.gene89061:intron | 30.0% | |
| ACCGTTAATATGAGATTGTA+CGG | + | chr2.4:2184367-2184386 | None:intergenic | 30.0% | |
| AGAGAAGAGTAAAAGAGAAA+AGG | + | chr2.4:2182732-2182751 | None:intergenic | 30.0% | |
| AGTTTGAGCATTTCAATGTA+TGG | - | chr2.4:2183105-2183124 | MS.gene89061:intron | 30.0% | |
| ATAAAAATTACATGCAGTGC+AGG | + | chr2.4:2183489-2183508 | None:intergenic | 30.0% | |
| CTCTTAAATTGACAGGATAT+GGG | + | chr2.4:2183970-2183989 | None:intergenic | 30.0% | |
| GATTATAATTGTTGGAAGCT+TGG | - | chr2.4:2182952-2182971 | MS.gene89061:intron | 30.0% | |
| GTTCATATTCTTTCCCATAA+TGG | + | chr2.4:2182838-2182857 | None:intergenic | 30.0% | |
| TAAAAATTACATGCAGTGCA+GGG | + | chr2.4:2183488-2183507 | None:intergenic | 30.0% | |
| TAATCATTTGGCTAATGTGT+TGG | - | chr2.4:2184119-2184138 | MS.gene89061:intron | 30.0% | |
| TCATCATAAGACATAACCAT+TGG | - | chr2.4:2182644-2182663 | MS.gene89061:CDS | 30.0% | |
| TGATTATTATGTGACAGTGA+AGG | - | chr2.4:2183859-2183878 | MS.gene89061:intron | 30.0% | |
| TGATTGAACAATAATCTGCA+GGG | - | chr2.4:2183567-2183586 | MS.gene89061:CDS | 30.0% | |
| TTAGAGCTTCAACAAAATCA+CGG | + | chr2.4:2182146-2182165 | None:intergenic | 30.0% | |
| TTGCATTCAAATCCTATGAA+GGG | - | chr2.4:2184663-2184682 | MS.gene89061:intron | 30.0% | |
| ! | AACTTCAATGCAAATTTGCT+AGG | - | chr2.4:2182337-2182356 | MS.gene89061:intron | 30.0% |
| ! | TGTGATTTTTGCATAAGCTA+CGG | + | chr2.4:2182170-2182189 | None:intergenic | 30.0% |
| ! | TTACCAATTTTACAGTGTCA+CGG | - | chr2.4:2184214-2184233 | MS.gene89061:intron | 30.0% |
| ! | TTTTGGACCTTAATTAAGGT+TGG | - | chr2.4:2183818-2183837 | MS.gene89061:intron | 30.0% |
| !! | ATAAAAGGGTGCTTAGATAT+AGG | - | chr2.4:2183765-2183784 | MS.gene89061:intron | 30.0% |
| !! | GATCAAAGCATTCATTTTGT+AGG | - | chr2.4:2184569-2184588 | MS.gene89061:intron | 30.0% |
| !! | TAAAAGGGTGCTTAGATATA+GGG | - | chr2.4:2183766-2183785 | MS.gene89061:intron | 30.0% |
| !! | TAATTGACTTGGTGCATATT+TGG | + | chr2.4:2182229-2182248 | None:intergenic | 30.0% |
| AAAACAGAACAAGTAGGAGA+AGG | + | chr2.4:2182675-2182694 | None:intergenic | 35.0% | |
| AAAAGGAAAAAGAGAGGTTG+TGG | + | chr2.4:2182715-2182734 | None:intergenic | 35.0% | |
| AATATAGGATACCTTGATCC+TGG | + | chr2.4:2184019-2184038 | None:intergenic | 35.0% | |
| ACAACTGCTCTTAAATTGAC+AGG | + | chr2.4:2183977-2183996 | None:intergenic | 35.0% | |
| ACCGTTTGCCTCTAATAAAA+GGG | - | chr2.4:2183751-2183770 | MS.gene89061:intron | 35.0% | |
| ATTCATGCAAGTTGCAAAGA+AGG | + | chr2.4:2182057-2182076 | None:intergenic | 35.0% | |
| ATTCCGTGACACTGTAAAAT+TGG | + | chr2.4:2184220-2184239 | None:intergenic | 35.0% | |
| CAAGCTACCAACCTTAATTA+AGG | + | chr2.4:2183828-2183847 | None:intergenic | 35.0% | |
| CTGATAGATGTCAAAACATG+AGG | + | chr2.4:2182394-2182413 | None:intergenic | 35.0% | |
| GAACAGTTATCTCAGTTTGT+TGG | - | chr2.4:2184731-2184750 | MS.gene89061:intron | 35.0% | |
| GACATATAGCAGTGTTAGAA+AGG | + | chr2.4:2182605-2182624 | None:intergenic | 35.0% | |
| GATTGCTATAAGTGCATGTT+TGG | - | chr2.4:2182088-2182107 | MS.gene89061:intron | 35.0% | |
| GATTTCATCTTACCCTTCAT+AGG | + | chr2.4:2184678-2184697 | None:intergenic | 35.0% | |
| GCTCTTAAATTGACAGGATA+TGG | + | chr2.4:2183971-2183990 | None:intergenic | 35.0% | |
| GTCAATTTAAGAGCAGTTGT+TGG | - | chr2.4:2183977-2183996 | MS.gene89061:intron | 35.0% | |
| GTGATTGAACAATAATCTGC+AGG | - | chr2.4:2183566-2183585 | MS.gene89061:CDS | 35.0% | |
| GTTGCATTCAAATCCTATGA+AGG | - | chr2.4:2184662-2184681 | MS.gene89061:intron | 35.0% | |
| TATTATGTGACAGTGAAGGT+TGG | - | chr2.4:2183863-2183882 | MS.gene89061:intron | 35.0% | |
| TCAGCAGAATATATTCCATG+TGG | + | chr2.4:2182922-2182941 | None:intergenic | 35.0% | |
| ! | ACCCTTTTATTAGAGGCAAA+CGG | + | chr2.4:2183755-2183774 | None:intergenic | 35.0% |
| ! | GTAGCTTGATGTTTTCCTTT+AGG | + | chr2.4:2182529-2182548 | None:intergenic | 35.0% |
| ! | TCTAAGCACCCTTTTATTAG+AGG | + | chr2.4:2183762-2183781 | None:intergenic | 35.0% |
| ! | TTTTACCACTGCATGAAATC+TGG | - | chr2.4:2184417-2184436 | MS.gene89061:intron | 35.0% |
| AAGAGAGGTTGTGGAAAGAA+AGG | + | chr2.4:2182706-2182725 | None:intergenic | 40.0% | |
| ACTCGACGAACTTTCGAATT+CGG | - | chr2.4:2182484-2182503 | MS.gene89061:intron | 40.0% | |
| AGAAGATGGTCCAGATGATT+GGG | - | chr2.4:2183610-2183629 | MS.gene89061:intron | 40.0% | |
| AGAATCCAGATTTCATGCAG+TGG | + | chr2.4:2184425-2184444 | None:intergenic | 40.0% | |
| AGATTTCTCTCCATACTTGC+AGG | + | chr2.4:2184609-2184628 | None:intergenic | 40.0% | |
| ATAATCTGCAGGGTTTGATG+TGG | - | chr2.4:2183577-2183596 | MS.gene89061:CDS | 40.0% | |
| ATAGTTTGGTTGCATGGACT+TGG | - | chr2.4:2182550-2182569 | MS.gene89061:intron | 40.0% | |
| CACCGTTTGCCTCTAATAAA+AGG | - | chr2.4:2183750-2183769 | MS.gene89061:intron | 40.0% | |
| CTCAATCCTTAAGTTCAGCA+GGG | - | chr2.4:2184630-2184649 | MS.gene89061:intron | 40.0% | |
| GATTTCTCTCCATACTTGCA+GGG | + | chr2.4:2184608-2184627 | None:intergenic | 40.0% | |
| GCAAACGGTGCTTACATATA+GGG | + | chr2.4:2183740-2183759 | None:intergenic | 40.0% | |
| GCTACTATAGTTTGGTTGCA+TGG | - | chr2.4:2182544-2182563 | MS.gene89061:intron | 40.0% | |
| GTAGGAGAAGGAATAACCAA+TGG | + | chr2.4:2182663-2182682 | None:intergenic | 40.0% | |
| TAATCTGCAGGGTTTGATGT+GGG | - | chr2.4:2183578-2183597 | MS.gene89061:CDS | 40.0% | |
| TACACAGTTCCAAGAGAGAT+GGG | - | chr2.4:2184780-2184799 | MS.gene89061:intron | 40.0% | |
| TGCTTAGATATAGGGACAGA+GGG | - | chr2.4:2183774-2183793 | MS.gene89061:intron | 40.0% | |
| TTACACAGTTCCAAGAGAGA+TGG | - | chr2.4:2184779-2184798 | MS.gene89061:intron | 40.0% | |
| !! | AATTTGCTAGGTCCGTTTGA+AGG | - | chr2.4:2182349-2182368 | MS.gene89061:intron | 40.0% |
| !! | CAGATGGTTGGTACTTTTCA+AGG | - | chr2.4:2183687-2183706 | MS.gene89061:intron | 40.0% |
| !! | CTTTCTGGTTAGATTCCACA+TGG | - | chr2.4:2182904-2182923 | MS.gene89061:CDS | 40.0% |
| !! | GACTTGGTGATAATGGTTTG+AGG | - | chr2.4:2182566-2182585 | MS.gene89061:intron | 40.0% |
| !! | TTGCATGGACTTGGTGATAA+TGG | - | chr2.4:2182559-2182578 | MS.gene89061:intron | 40.0% |
| AAGTGTCACATGAAGCGAGA+AGG | - | chr2.4:2184179-2184198 | MS.gene89061:intron | 45.0% | |
| AATCTGCAGGGTTTGATGTG+GGG | - | chr2.4:2183579-2183598 | MS.gene89061:CDS | 45.0% | |
| ACACATGTAGTGAGGCCTAA+AGG | - | chr2.4:2182511-2182530 | MS.gene89061:intron | 45.0% | |
| ACCTGGCTTAGTTCAAGGTT+GGG | - | chr2.4:2184813-2184832 | MS.gene89061:intron | 45.0% | |
| ACGGTGCTTACATATAGGGA+CGG | + | chr2.4:2183736-2183755 | None:intergenic | 45.0% | |
| AGTCACGCGCATTCTCATAT+CGG | - | chr2.4:2181988-2182007 | MS.gene89061:CDS | 45.0% | |
| AGTTCAAGGTTGGGACTTGA+AGG | - | chr2.4:2184822-2184841 | MS.gene89061:intron | 45.0% | |
| CAGAAGATGGTCCAGATGAT+TGG | - | chr2.4:2183609-2183628 | MS.gene89061:intron | 45.0% | |
| CTCGACGAACTTTCGAATTC+GGG | - | chr2.4:2182485-2182504 | MS.gene89061:intron | 45.0% | |
| GAAACTTCACCCATCTCTCT+TGG | + | chr2.4:2184792-2184811 | None:intergenic | 45.0% | |
| GATGTAGTACCCTGCAAGTA+TGG | - | chr2.4:2184596-2184615 | MS.gene89061:intron | 45.0% | |
| GCTCAATCCTTAAGTTCAGC+AGG | - | chr2.4:2184629-2184648 | MS.gene89061:intron | 45.0% | |
| GGCAAACGGTGCTTACATAT+AGG | + | chr2.4:2183741-2183760 | None:intergenic | 45.0% | |
| GTGCTTAGATATAGGGACAG+AGG | - | chr2.4:2183773-2183792 | MS.gene89061:intron | 45.0% | |
| GTTGGAATCTGCTATCGTGT+AGG | - | chr2.4:2184137-2184156 | MS.gene89061:intron | 45.0% | |
| TCAGCAATGCAACATGCTAG+AGG | + | chr2.4:2182318-2182337 | None:intergenic | 45.0% | |
| TCGAAACCCTGCTGAACTTA+AGG | + | chr2.4:2184639-2184658 | None:intergenic | 45.0% | |
| TCTGCAACATGCTATGCCAT+GGG | - | chr2.4:2183926-2183945 | MS.gene89061:intron | 45.0% | |
| TGCTATCGTGTAGGAGCTTA+GGG | - | chr2.4:2184146-2184165 | MS.gene89061:intron | 45.0% | |
| TGCTTACATATAGGGACGGA+GGG | + | chr2.4:2183732-2183751 | None:intergenic | 45.0% | |
| TTTCCACCTGGCTTAGTTCA+AGG | - | chr2.4:2184808-2184827 | MS.gene89061:intron | 45.0% | |
| ! | AAAACCACCAAGTATCGCCA+CGG | + | chr2.4:2183465-2183484 | None:intergenic | 45.0% |
| ! | GTGCATGTTTGGAGTCACAA+CGG | - | chr2.4:2182099-2182118 | MS.gene89061:intron | 45.0% |
| !! | GAAAAGTACCAACCATCTGC+TGG | + | chr2.4:2183686-2183705 | None:intergenic | 45.0% |
| !! | TGTTGGTTTCTGATGCATGC+AGG | - | chr2.4:2184748-2184767 | MS.gene89061:intron | 45.0% |
| !! | TAAATAAATTAACAAAAATT+AGG | + | chr2.4:2183519-2183538 | None:intergenic | 5.0% |
| !!! | AATTTTTGTTAATTTATTTA+GGG | - | chr2.4:2183519-2183538 | MS.gene89061:intron | 5.0% |
| !!! | TAATTTTTGTTAATTTATTT+AGG | - | chr2.4:2183518-2183537 | MS.gene89061:intron | 5.0% |
| AGAGCAGTTGTTGGACTCAG+TGG | - | chr2.4:2183986-2184005 | MS.gene89061:intron | 50.0% | |
| AGATGGGTGAAGTTTCCACC+TGG | - | chr2.4:2184796-2184815 | MS.gene89061:intron | 50.0% | |
| AGATGGTCCAGATGATTGGG+AGG | - | chr2.4:2183613-2183632 | MS.gene89061:intron | 50.0% | |
| ATCTGCAGGGTTTGATGTGG+GGG | - | chr2.4:2183580-2183599 | MS.gene89061:CDS | 50.0% | |
| CAACATGCTATGCCATGGGA+AGG | - | chr2.4:2183930-2183949 | MS.gene89061:intron | 50.0% | |
| CAACCTTGAACTAAGCCAGG+TGG | + | chr2.4:2184814-2184833 | None:intergenic | 50.0% | |
| CACCTGGCTTAGTTCAAGGT+TGG | - | chr2.4:2184812-2184831 | MS.gene89061:intron | 50.0% | |
| CAGTTGTTGGACTCAGTGGT+TGG | - | chr2.4:2183990-2184009 | MS.gene89061:intron | 50.0% | |
| CTCTGCAACATGCTATGCCA+TGG | - | chr2.4:2183925-2183944 | MS.gene89061:intron | 50.0% | |
| CTGCAGCTCATCTCAGTTGT+TGG | - | chr2.4:2183236-2183255 | MS.gene89061:intron | 50.0% | |
| CTGCTATCGTGTAGGAGCTT+AGG | - | chr2.4:2184145-2184164 | MS.gene89061:intron | 50.0% | |
| GATGGTCCAGATGATTGGGA+GGG | - | chr2.4:2183614-2183633 | MS.gene89061:intron | 50.0% | |
| GCCATTTCCATACCTTCCCA+TGG | + | chr2.4:2183945-2183964 | None:intergenic | 50.0% | |
| GTGACAGTGAAGGTTGGCAT+TGG | - | chr2.4:2183869-2183888 | MS.gene89061:intron | 50.0% | |
| GTGCTTACATATAGGGACGG+AGG | + | chr2.4:2183733-2183752 | None:intergenic | 50.0% | |
| GTTTCTGATGCATGCAGGCT+TGG | - | chr2.4:2184753-2184772 | MS.gene89061:intron | 50.0% | |
| TCCAAACCCTCCCAATCATC+TGG | + | chr2.4:2183623-2183642 | None:intergenic | 50.0% | |
| TCCAGATGATTGGGAGGGTT+TGG | - | chr2.4:2183619-2183638 | MS.gene89061:intron | 50.0% | |
| TCCCAACCTTGAACTAAGCC+AGG | + | chr2.4:2184817-2184836 | None:intergenic | 50.0% | |
| TCGGGAAGACACATGTAGTG+AGG | - | chr2.4:2182503-2182522 | MS.gene89061:intron | 50.0% | |
| TGCTATGCCATGGGAAGGTA+TGG | - | chr2.4:2183935-2183954 | MS.gene89061:intron | 50.0% | |
| TTGTCAACAGAGCCAGCAGA+TGG | - | chr2.4:2183671-2183690 | MS.gene89061:intron | 50.0% | |
| ! | AAACCACCAAGTATCGCCAC+GGG | + | chr2.4:2183464-2183483 | None:intergenic | 50.0% |
| ! | ACAGTGAAGGTTGGCATTGG+AGG | - | chr2.4:2183872-2183891 | MS.gene89061:intron | 50.0% |
| ! | CAGTGAAGGTTGGCATTGGA+GGG | - | chr2.4:2183873-2183892 | MS.gene89061:intron | 50.0% |
| ! | GCCATGGGAAGGTATGGAAA+TGG | - | chr2.4:2183941-2183960 | MS.gene89061:intron | 50.0% |
| CAACAGAGCCAGCAGATGGT+TGG | - | chr2.4:2183675-2183694 | MS.gene89061:intron | 55.0% | |
| GTGGGGGAGCTTTCAGAAGA+TGG | - | chr2.4:2183596-2183615 | MS.gene89061:intron | 55.0% | |
| ! | GGCATTGGAGGGTTCAGCAT+GGG | - | chr2.4:2183884-2183903 | MS.gene89061:intron | 55.0% |
| ! | TGGCATTGGAGGGTTCAGCA+TGG | - | chr2.4:2183883-2183902 | MS.gene89061:intron | 55.0% |
| !! | GCGCATTCTCATATCGGCTC+TGG | - | chr2.4:2181994-2182013 | MS.gene89061:CDS | 55.0% |
| !! | GTGGTTGGCTTCCAGGATCA+AGG | - | chr2.4:2184005-2184024 | MS.gene89061:intron | 55.0% |
| ! | ACCAAGTATCGCCACGGGAC+GGG | + | chr2.4:2183459-2183478 | None:intergenic | 60.0% |
| ! | CACCAAGTATCGCCACGGGA+CGG | + | chr2.4:2183460-2183479 | None:intergenic | 60.0% |
| !! | GGACTCAGTGGTTGGCTTCC+AGG | - | chr2.4:2183998-2184017 | MS.gene89061:intron | 60.0% |
| ACCCGTCCCGTGGCGATACT+TGG | - | chr2.4:2183455-2183474 | MS.gene89061:intron | 65.0% | |
| ACGGGACGGGTAGGAGCAGT+AGG | + | chr2.4:2183446-2183465 | None:intergenic | 65.0% | |
| AGTATCGCCACGGGACGGGT+AGG | + | chr2.4:2183455-2183474 | None:intergenic | 65.0% | |
| CGGGACGGGTAGGAGCAGTA+GGG | + | chr2.4:2183445-2183464 | None:intergenic | 65.0% | |
| CGTCCCGTGGCGATACTTGG+TGG | - | chr2.4:2183458-2183477 | MS.gene89061:intron | 65.0% | |
| TACTGCTCCTACCCGTCCCG+TGG | - | chr2.4:2183445-2183464 | MS.gene89061:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 2181985 | 2184857 | 2181985 | ID=MS.gene89061 |
| chr2.4 | mRNA | 2181985 | 2184857 | 2181985 | ID=MS.gene89061.t1;Parent=MS.gene89061 |
| chr2.4 | exon | 2184827 | 2184857 | 2184827 | ID=MS.gene89061.t1.exon1;Parent=MS.gene89061.t1 |
| chr2.4 | CDS | 2184827 | 2184857 | 2184827 | ID=cds.MS.gene89061.t1;Parent=MS.gene89061.t1 |
| chr2.4 | exon | 2184255 | 2184369 | 2184255 | ID=MS.gene89061.t1.exon2;Parent=MS.gene89061.t1 |
| chr2.4 | CDS | 2184255 | 2184369 | 2184255 | ID=cds.MS.gene89061.t1;Parent=MS.gene89061.t1 |
| chr2.4 | exon | 2183564 | 2183600 | 2183564 | ID=MS.gene89061.t1.exon3;Parent=MS.gene89061.t1 |
| chr2.4 | CDS | 2183564 | 2183600 | 2183564 | ID=cds.MS.gene89061.t1;Parent=MS.gene89061.t1 |
| chr2.4 | exon | 2183345 | 2183414 | 2183345 | ID=MS.gene89061.t1.exon4;Parent=MS.gene89061.t1 |
| chr2.4 | CDS | 2183345 | 2183414 | 2183345 | ID=cds.MS.gene89061.t1;Parent=MS.gene89061.t1 |
| chr2.4 | exon | 2183150 | 2183254 | 2183150 | ID=MS.gene89061.t1.exon5;Parent=MS.gene89061.t1 |
| chr2.4 | CDS | 2183150 | 2183254 | 2183150 | ID=cds.MS.gene89061.t1;Parent=MS.gene89061.t1 |
| chr2.4 | exon | 2182816 | 2182966 | 2182816 | ID=MS.gene89061.t1.exon6;Parent=MS.gene89061.t1 |
| chr2.4 | CDS | 2182816 | 2182966 | 2182816 | ID=cds.MS.gene89061.t1;Parent=MS.gene89061.t1 |
| chr2.4 | exon | 2182601 | 2182683 | 2182601 | ID=MS.gene89061.t1.exon7;Parent=MS.gene89061.t1 |
| chr2.4 | CDS | 2182601 | 2182683 | 2182601 | ID=cds.MS.gene89061.t1;Parent=MS.gene89061.t1 |
| chr2.4 | exon | 2182158 | 2182251 | 2182158 | ID=MS.gene89061.t1.exon8;Parent=MS.gene89061.t1 |
| chr2.4 | CDS | 2182158 | 2182251 | 2182158 | ID=cds.MS.gene89061.t1;Parent=MS.gene89061.t1 |
| chr2.4 | exon | 2181985 | 2182072 | 2181985 | ID=MS.gene89061.t1.exon9;Parent=MS.gene89061.t1 |
| chr2.4 | CDS | 2181985 | 2182072 | 2181985 | ID=cds.MS.gene89061.t1;Parent=MS.gene89061.t1 |
| Gene Sequence |
| Protein sequence |
