Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86352.t1 | XP_024631716.1 | 99.6 | 257 | 1 | 0 | 1 | 257 | 1 | 257 | 4.20E-148 | 533.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86352.t1 | O95372 | 36.7 | 226 | 117 | 7 | 32 | 250 | 22 | 228 | 3.4e-29 | 130.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86352.t1 | G7IMH6 | 99.6 | 257 | 1 | 0 | 1 | 257 | 1 | 257 | 3.0e-148 | 533.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene36243 | MS.gene86352 | PPI |
| MS.gene034041 | MS.gene86352 | PPI |
| MS.gene37311 | MS.gene86352 | PPI |
| MS.gene86352 | MS.gene89061 | PPI |
| MS.gene026794 | MS.gene86352 | PPI |
| MS.gene034040 | MS.gene86352 | PPI |
| MS.gene89061 | MS.gene86352 | PPI |
| MS.gene034042 | MS.gene86352 | PPI |
| MS.gene067343 | MS.gene86352 | PPI |
| MS.gene067344 | MS.gene86352 | PPI |
| MS.gene038854 | MS.gene86352 | PPI |
| MS.gene86352 | MS.gene37311 | PPI |
| MS.gene83338 | MS.gene86352 | PPI |
| MS.gene79485 | MS.gene86352 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86352.t1 | MTR_2g103140 | 99.611 | 257 | 1 | 0 | 1 | 257 | 1 | 257 | 0.0 | 526 |
| MS.gene86352.t1 | MTR_4g011320 | 84.496 | 258 | 39 | 1 | 1 | 257 | 1 | 258 | 1.52e-158 | 441 |
| MS.gene86352.t1 | MTR_2g054780 | 67.717 | 254 | 80 | 1 | 1 | 254 | 1 | 252 | 1.58e-129 | 367 |
| MS.gene86352.t1 | MTR_3g107630 | 70.293 | 239 | 71 | 0 | 17 | 255 | 17 | 255 | 3.86e-123 | 351 |
| MS.gene86352.t1 | MTR_2g054780 | 65.354 | 254 | 79 | 2 | 1 | 254 | 1 | 245 | 9.45e-122 | 347 |
| MS.gene86352.t1 | MTR_4g132890 | 30.045 | 223 | 129 | 7 | 37 | 250 | 7 | 211 | 3.15e-21 | 89.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86352.t1 | AT1G52700 | 76.378 | 254 | 59 | 1 | 1 | 254 | 1 | 253 | 8.29e-140 | 393 |
| MS.gene86352.t1 | AT1G52700 | 76.378 | 254 | 59 | 1 | 1 | 254 | 1 | 253 | 8.29e-140 | 393 |
| MS.gene86352.t1 | AT3G15650 | 72.161 | 273 | 56 | 2 | 1 | 254 | 1 | 272 | 1.33e-136 | 385 |
| MS.gene86352.t1 | AT1G52700 | 77.459 | 244 | 54 | 1 | 11 | 254 | 2 | 244 | 2.06e-135 | 382 |
| MS.gene86352.t1 | AT3G15650 | 77.559 | 254 | 56 | 1 | 1 | 254 | 1 | 253 | 5.43e-132 | 373 |
| MS.gene86352.t1 | AT3G15650 | 78.543 | 247 | 52 | 1 | 8 | 254 | 18 | 263 | 7.17e-129 | 366 |
| MS.gene86352.t1 | AT5G20060 | 66.535 | 254 | 83 | 2 | 1 | 254 | 1 | 252 | 1.42e-128 | 364 |
| MS.gene86352.t1 | AT5G20060 | 66.535 | 254 | 83 | 2 | 1 | 254 | 1 | 252 | 1.42e-128 | 364 |
| MS.gene86352.t1 | AT5G20060 | 66.535 | 254 | 83 | 2 | 1 | 254 | 1 | 252 | 1.42e-128 | 364 |
| MS.gene86352.t1 | AT5G20060 | 66.535 | 254 | 83 | 2 | 1 | 254 | 1 | 252 | 1.42e-128 | 364 |
| MS.gene86352.t1 | AT1G52700 | 77.114 | 201 | 46 | 0 | 54 | 254 | 1 | 201 | 8.75e-110 | 315 |
| MS.gene86352.t1 | AT1G52700 | 78.061 | 196 | 42 | 1 | 1 | 196 | 1 | 195 | 7.58e-109 | 313 |
| MS.gene86352.t1 | AT1G52700 | 78.061 | 196 | 42 | 1 | 1 | 196 | 1 | 195 | 7.58e-109 | 313 |
| MS.gene86352.t1 | AT1G51300 | 44.813 | 241 | 125 | 2 | 16 | 254 | 30 | 264 | 2.65e-67 | 209 |
| MS.gene86352.t1 | AT1G51300 | 45.540 | 213 | 108 | 2 | 16 | 226 | 30 | 236 | 2.03e-60 | 192 |
| MS.gene86352.t1 | AT1G52695 | 43.404 | 235 | 118 | 5 | 19 | 252 | 11 | 231 | 7.04e-55 | 176 |
| MS.gene86352.t1 | AT1G51300 | 46.429 | 168 | 82 | 2 | 16 | 181 | 19 | 180 | 5.53e-46 | 152 |
| MS.gene86352.t1 | AT1G52460 | 40.000 | 235 | 108 | 7 | 26 | 253 | 13 | 221 | 4.08e-39 | 136 |
| MS.gene86352.t1 | AT1G47786 | 46.296 | 162 | 74 | 4 | 14 | 170 | 33 | 186 | 3.86e-37 | 129 |
| MS.gene86352.t1 | AT1G52470 | 37.054 | 224 | 123 | 4 | 9 | 232 | 3 | 208 | 9.90e-37 | 130 |
| MS.gene86352.t1 | AT1G52470 | 38.298 | 188 | 98 | 4 | 9 | 196 | 3 | 172 | 1.69e-32 | 117 |
| MS.gene86352.t1 | AT1G52470 | 38.298 | 188 | 98 | 4 | 9 | 196 | 3 | 172 | 1.77e-32 | 117 |
| MS.gene86352.t1 | AT1G52440 | 35.622 | 233 | 92 | 6 | 26 | 253 | 17 | 196 | 1.25e-30 | 113 |
| MS.gene86352.t1 | AT1G47780 | 52.727 | 110 | 49 | 1 | 61 | 170 | 23 | 129 | 2.97e-26 | 99.8 |
| MS.gene86352.t1 | AT4G22300 | 31.839 | 223 | 125 | 7 | 37 | 250 | 51 | 255 | 4.31e-24 | 97.8 |
| MS.gene86352.t1 | AT4G22305 | 31.390 | 223 | 126 | 7 | 37 | 250 | 6 | 210 | 1.07e-21 | 90.5 |
Find 77 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTCTTAAATTGACAGGATA+TGG | 0.177168 | 2.3:+1724010 | None:intergenic |
| GGACTCAGTGGCTGGCTTCC+AGG | 0.251661 | 2.3:-1723980 | MS.gene86352:CDS |
| ATGATATGATACAGATAAAA+TGG | 0.253421 | 2.3:-1724564 | MS.gene86352:intron |
| ATTCCGTGACACTGTAAAAT+TGG | 0.284885 | 2.3:+1723761 | None:intergenic |
| CTGCAGCTCATCTCAGTTGT+TGG | 0.306667 | 2.3:-1724742 | MS.gene86352:intron |
| GATTTCATCTTACCCTTCAT+AGG | 0.341429 | 2.3:+1723303 | None:intergenic |
| CAGAAGATGGTCCAGATGAT+TGG | 0.348652 | 2.3:-1724368 | MS.gene86352:CDS |
| AACATCAAGCCACTATAGTT+TGG | 0.360154 | 2.3:-1725480 | MS.gene86352:CDS |
| TCCAGATGATTGGGAGGGTT+TGG | 0.362266 | 2.3:-1724358 | MS.gene86352:CDS |
| ACCCGTCCCGTGGCGATACT+TGG | 0.362645 | 2.3:-1724523 | MS.gene86352:CDS |
| ACCTGGCTTAGTTCAAGGTT+GGG | 0.374896 | 2.3:-1723165 | MS.gene86352:CDS |
| CTGCTATCGTGTAGGAGCTT+AGG | 0.385731 | 2.3:-1723833 | MS.gene86352:intron |
| TTGCATGGACTTGGTGATAA+TGG | 0.386499 | 2.3:-1725457 | MS.gene86352:CDS |
| TCGAAACCCTGCTGAGCTTA+AGG | 0.389243 | 2.3:+1723342 | None:intergenic |
| TGCTATCGTGTAGGAGCTTA+GGG | 0.407200 | 2.3:-1723832 | MS.gene86352:intron |
| TTTCCACCTGGCTTAGTTCA+AGG | 0.409660 | 2.3:-1723170 | MS.gene86352:CDS |
| CACCTGGCTTAGTTCAAGGT+TGG | 0.410510 | 2.3:-1723166 | MS.gene86352:CDS |
| GGCATTGGAGGGTTCAGCAT+GGG | 0.423064 | 2.3:-1724094 | MS.gene86352:CDS |
| GTCAATTTAAGAGCAGTTGT+TGG | 0.432143 | 2.3:-1724001 | MS.gene86352:CDS |
| TCCAAACCCTCCCAATCATC+TGG | 0.433424 | 2.3:+1724357 | None:intergenic |
| CAGTTGTTGGACTCAGTGGC+TGG | 0.433705 | 2.3:-1723988 | MS.gene86352:CDS |
| GCTCAATCCTTAAGCTCAGC+AGG | 0.436768 | 2.3:-1723349 | MS.gene86352:CDS |
| AGAAGATGGTCCAGATGATT+GGG | 0.441840 | 2.3:-1724367 | MS.gene86352:CDS |
| GAAACTTCACCCATCTCTCT+TGG | 0.455198 | 2.3:+1723189 | None:intergenic |
| TGCTATGCCATGGGAAGGTA+TGG | 0.455698 | 2.3:-1724043 | MS.gene86352:CDS |
| AGTTCAAGGTTGGGACTTGA+AGG | 0.458085 | 2.3:-1723156 | MS.gene86352:CDS |
| GCCACTATAGTTTGGTTGCA+TGG | 0.469867 | 2.3:-1725472 | MS.gene86352:CDS |
| GATGTAGTACACTGCAAGTA+TGG | 0.471049 | 2.3:-1723382 | MS.gene86352:CDS |
| AGTCACGCGCATTCTCATAT+CGG | 0.472684 | 2.3:-1726027 | MS.gene86352:CDS |
| ACGGGACGGGTAGGAGCAGT+AGG | 0.474505 | 2.3:+1724535 | None:intergenic |
| GTTGCATTCAAATCCTATGA+AGG | 0.479609 | 2.3:-1723316 | MS.gene86352:CDS |
| ATAGTTTGGTTGCATGGACT+TGG | 0.481871 | 2.3:-1725466 | MS.gene86352:CDS |
| CTCTTAAATTGACAGGATAT+GGG | 0.492207 | 2.3:+1724011 | None:intergenic |
| AATATAGGATACCTTGATCC+TGG | 0.497671 | 2.3:+1723962 | None:intergenic |
| GCCATGGGAAGGTATGGAAA+TGG | 0.499012 | 2.3:-1724037 | MS.gene86352:CDS |
| TGGCATTGGAGGGTTCAGCA+TGG | 0.500431 | 2.3:-1724095 | MS.gene86352:CDS |
| AATATTCTTACATTTGGAAG+TGG | 0.504794 | 2.3:+1724711 | None:intergenic |
| ACCAAGTATCGCCACGGGAC+GGG | 0.505652 | 2.3:+1724522 | None:intergenic |
| ACAACTGCTCTTAAATTGAC+AGG | 0.511596 | 2.3:+1724004 | None:intergenic |
| ACAGTGAAGGTTGGCATTGG+AGG | 0.514761 | 2.3:-1724106 | MS.gene86352:intron |
| ATCTGCAGGGTTTGATGTGG+GGG | 0.515644 | 2.3:-1724397 | MS.gene86352:intron |
| GAAAAGTACCAACCATCTGC+TGG | 0.518011 | 2.3:+1724294 | None:intergenic |
| CTCTGCAACATGCTATGCCA+TGG | 0.520478 | 2.3:-1724053 | MS.gene86352:CDS |
| TAATCTGCAGGGTTTGATGT+GGG | 0.528835 | 2.3:-1724399 | MS.gene86352:intron |
| ACACATGTAGTGAGGCCTAA+AGG | 0.529217 | 2.3:-1725505 | MS.gene86352:CDS |
| TCCCAACCTTGAACTAAGCC+AGG | 0.530276 | 2.3:+1723164 | None:intergenic |
| GTGGCTGGCTTCCAGGATCA+AGG | 0.532369 | 2.3:-1723973 | MS.gene86352:intron |
| TCCATGCAACCAAACTATAG+TGG | 0.533949 | 2.3:+1725471 | None:intergenic |
| CGTCCCGTGGCGATACTTGG+TGG | 0.534524 | 2.3:-1724520 | MS.gene86352:CDS |
| GCGCATTCTCATATCGGCTC+CGG | 0.536122 | 2.3:-1726021 | MS.gene86352:intron |
| CAGTGAAGGTTGGCATTGGA+GGG | 0.550934 | 2.3:-1724105 | MS.gene86352:CDS |
| AATCTGCAGGGTTTGATGTG+GGG | 0.558147 | 2.3:-1724398 | MS.gene86352:intron |
| TACACAGTTCCAAGAGAGAT+GGG | 0.566504 | 2.3:-1723198 | MS.gene86352:CDS |
| TTAATCTGCAGGGTTTGATG+TGG | 0.566816 | 2.3:-1724400 | MS.gene86352:intron |
| GCCATTTCCATACCTTCCCA+TGG | 0.566957 | 2.3:+1724036 | None:intergenic |
| CACCAAGTATCGCCACGGGA+CGG | 0.567381 | 2.3:+1724521 | None:intergenic |
| TTGCATTCAAATCCTATGAA+GGG | 0.567894 | 2.3:-1723315 | MS.gene86352:intron |
| GTGACAGTGAAGGTTGGCAT+TGG | 0.569578 | 2.3:-1724109 | MS.gene86352:intron |
| AGAGCAGTTGTTGGACTCAG+TGG | 0.571283 | 2.3:-1723992 | MS.gene86352:CDS |
| TTGTCAACAGAGCCAGCAGA+TGG | 0.578833 | 2.3:-1724306 | MS.gene86352:intron |
| GACTTGGTGATAATGGTTTG+AGG | 0.581699 | 2.3:-1725450 | MS.gene86352:intron |
| TTACACAGTTCCAAGAGAGA+TGG | 0.585012 | 2.3:-1723199 | MS.gene86352:CDS |
| CGGGACGGGTAGGAGCAGTA+GGG | 0.588956 | 2.3:+1724536 | None:intergenic |
| TACTGCTCCTACCCGTCCCG+TGG | 0.594923 | 2.3:-1724533 | MS.gene86352:CDS |
| CTCAATCCTTAAGCTCAGCA+GGG | 0.599161 | 2.3:-1723348 | MS.gene86352:CDS |
| AAGTGTCACATGAAGCGAGA+AGG | 0.615847 | 2.3:-1723799 | MS.gene86352:CDS |
| TCTGCAACATGCTATGCCAT+GGG | 0.616412 | 2.3:-1724052 | MS.gene86352:CDS |
| AGTATCGCCACGGGACGGGT+AGG | 0.617013 | 2.3:+1724526 | None:intergenic |
| CAACATGCTATGCCATGGGA+AGG | 0.620791 | 2.3:-1724048 | MS.gene86352:CDS |
| AGATGGTCCAGATGATTGGG+AGG | 0.628482 | 2.3:-1724364 | MS.gene86352:CDS |
| AGATGGGTGAAGTTTCCACC+TGG | 0.640732 | 2.3:-1723182 | MS.gene86352:CDS |
| AAAACCACCAAGTATCGCCA+CGG | 0.640799 | 2.3:+1724516 | None:intergenic |
| GATGGTCCAGATGATTGGGA+GGG | 0.647020 | 2.3:-1724363 | MS.gene86352:CDS |
| AAACCACCAAGTATCGCCAC+GGG | 0.651184 | 2.3:+1724517 | None:intergenic |
| AATTATGTGACAGTGAAGGT+TGG | 0.657467 | 2.3:-1724115 | MS.gene86352:intron |
| TCGGGAAGACACATGTAGTG+AGG | 0.680314 | 2.3:-1725513 | MS.gene86352:CDS |
| CAACCTTGAACTAAGCCAGG+TGG | 0.690014 | 2.3:+1723167 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATAAATATTCTTACATT+TGG | + | chr2.3:1724471-1724490 | None:intergenic | 10.0% |
| !!! | TCAAAATATTATTTTAGTTA+TGG | + | chr2.3:1724550-1724569 | None:intergenic | 10.0% |
| !! | AAATAGTAGTGTTATAATAT+AGG | + | chr2.3:1725229-1725248 | None:intergenic | 15.0% |
| !! | GATAAGAGAAAATAATAAAA+TGG | + | chr2.3:1723193-1723212 | None:intergenic | 15.0% |
| !! | TATATAATATGAATAGAAAC+TGG | - | chr2.3:1724222-1724241 | MS.gene86352:intron | 15.0% |
| !!! | AATAACACATTAACATTTTT+TGG | - | chr2.3:1724996-1725015 | MS.gene86352:intron | 15.0% |
| !!! | CAAAAATTTTATAGCATATT+TGG | - | chr2.3:1725688-1725707 | MS.gene86352:intron | 15.0% |
| !! | AAAGTTGTGATTATAATTGT+TGG | - | chr2.3:1724139-1724158 | MS.gene86352:intron | 20.0% |
| !! | AAGAATATGAACTATATTAG+AGG | - | chr2.3:1724041-1724060 | MS.gene86352:CDS | 20.0% |
| !! | ATAGTAATAATAGTAGCAAA+AGG | + | chr2.3:1725721-1725740 | None:intergenic | 20.0% |
| !! | ATGAAAGATAAAACCTTTAT+GGG | - | chr2.3:1724017-1724036 | MS.gene86352:CDS | 20.0% |
| !! | ATGATATGATACAGATAAAA+TGG | - | chr2.3:1724609-1724628 | MS.gene86352:intron | 20.0% |
| !! | TACTTAAAACATTCAACATA+AGG | + | chr2.3:1724071-1724090 | None:intergenic | 20.0% |
| !! | TATGAAAGATAAAACCTTTA+TGG | - | chr2.3:1724016-1724035 | MS.gene86352:CDS | 20.0% |
| !! | TCTTATATACTGATATAACT+AGG | - | chr2.3:1725452-1725471 | MS.gene86352:CDS | 20.0% |
| !! | TTAATTGATGTCAGATTTAA+TGG | - | chr2.3:1724369-1724388 | MS.gene86352:CDS | 20.0% |
| !!! | AAGGTTTTATCTTTCATATA+CGG | + | chr2.3:1724014-1724033 | None:intergenic | 20.0% |
| !!! | ATGTTAGACAATTTTTATCT+GGG | - | chr2.3:1724335-1724354 | MS.gene86352:CDS | 20.0% |
| !!! | ATTTTATAGCATATTTGGAA+TGG | - | chr2.3:1725693-1725712 | MS.gene86352:intron | 20.0% |
| ! | AATATTCTTACATTTGGAAG+TGG | + | chr2.3:1724465-1724484 | None:intergenic | 25.0% |
| ! | ACCGTAAAATCTCATATTAA+CGG | - | chr2.3:1725558-1725577 | MS.gene86352:intron | 25.0% |
| ! | ATTATCTTAAATGCTTCTCT+AGG | - | chr2.3:1724510-1724529 | MS.gene86352:CDS | 25.0% |
| ! | CTAAACAAGTCTAATTAACT+TGG | - | chr2.3:1724740-1724759 | MS.gene86352:intron | 25.0% |
| ! | TCAGTTTCACAATAATCATT+TGG | - | chr2.3:1725302-1725321 | MS.gene86352:intron | 25.0% |
| !! | AAACATGCTTATCTGATTTT+TGG | - | chr2.3:1724396-1724415 | MS.gene86352:intron | 25.0% |
| !! | AATTTTATGTTATTGAGCAC+TGG | - | chr2.3:1723582-1723601 | MS.gene86352:intron | 25.0% |
| !! | ACCGTTAATATGAGATTTTA+CGG | + | chr2.3:1725562-1725581 | None:intergenic | 25.0% |
| !! | ATTGATAACAATCCTTCAAA+TGG | + | chr2.3:1723524-1723543 | None:intergenic | 25.0% |
| !! | GATGTTAGACAATTTTTATC+TGG | - | chr2.3:1724334-1724353 | MS.gene86352:CDS | 25.0% |
| !! | TCTTTCTTGTTTACAATTAC+AGG | - | chr2.3:1723608-1723627 | MS.gene86352:intron | 25.0% |
| !! | TCTTTTGTCAATACTCATAT+AGG | + | chr2.3:1724201-1724220 | None:intergenic | 25.0% |
| !!! | ATTCTTTGTTGTTTTTAGTG+TGG | - | chr2.3:1724259-1724278 | MS.gene86352:intron | 25.0% |
| !!! | CATTTTTTGGACCTTAATTA+AGG | - | chr2.3:1725009-1725028 | MS.gene86352:intron | 25.0% |
| !!! | TTAAGTATTGAAGTTCTTTC+TGG | - | chr2.3:1724084-1724103 | MS.gene86352:CDS | 25.0% |
| AAAGAGAAAAGGAAAAAGAG+AGG | + | chr2.3:1723878-1723897 | None:intergenic | 30.0% | |
| AAAGAGAGGTAAAAGAGAAA+AGG | + | chr2.3:1723889-1723908 | None:intergenic | 30.0% | |
| AAATCAGATAAGCATGTTTC+TGG | + | chr2.3:1724395-1724414 | None:intergenic | 30.0% | |
| AAGTACAAAACAGAACAAGT+AGG | + | chr2.3:1723838-1723857 | None:intergenic | 30.0% | |
| AGAGAAGAGTAAAAGAGAAA+AGG | + | chr2.3:1723914-1723933 | None:intergenic | 30.0% | |
| AGTTTGAGCATTTCAATGTA+TGG | - | chr2.3:1724300-1724319 | MS.gene86352:intron | 30.0% | |
| ATAAAAATTACATGCAGTGC+AGG | + | chr2.3:1724684-1724703 | None:intergenic | 30.0% | |
| CTCTTAAATTGACAGGATAT+GGG | + | chr2.3:1725165-1725184 | None:intergenic | 30.0% | |
| GATTATAATTGTTGGAAGCT+TGG | - | chr2.3:1724147-1724166 | MS.gene86352:intron | 30.0% | |
| GTTCATATTCTTTCCCATAA+AGG | + | chr2.3:1724033-1724052 | None:intergenic | 30.0% | |
| TAAAAATTACATGCAGTGCA+GGG | + | chr2.3:1724683-1724702 | None:intergenic | 30.0% | |
| TAATCATTTGGCTAATGTGT+TGG | - | chr2.3:1725314-1725333 | MS.gene86352:intron | 30.0% | |
| TACTTCAATGCAAAATTGCT+AGG | - | chr2.3:1723497-1723516 | MS.gene86352:intron | 30.0% | |
| TAGAGCTTCAAACAAAATCT+CGG | + | chr2.3:1723305-1723324 | None:intergenic | 30.0% | |
| TCATCATAAGACATAACCAT+TGG | - | chr2.3:1723801-1723820 | MS.gene86352:CDS | 30.0% | |
| TGATAATTATGTGACAGTGA+AGG | - | chr2.3:1725054-1725073 | MS.gene86352:intron | 30.0% | |
| TGATTGAACATTAATCTGCA+GGG | - | chr2.3:1724763-1724782 | MS.gene86352:intron | 30.0% | |
| TTGCATTCAAATCCTATGAA+GGG | - | chr2.3:1725858-1725877 | MS.gene86352:intron | 30.0% | |
| ! | TTACCAATTTTACAGTGTCA+CGG | - | chr2.3:1725409-1725428 | MS.gene86352:intron | 30.0% |
| ! | TTTTGGACCTTAATTAAGGT+TGG | - | chr2.3:1725013-1725032 | MS.gene86352:intron | 30.0% |
| !! | CAATTGACTTGTTGCATATT+TGG | + | chr2.3:1723389-1723408 | None:intergenic | 30.0% |
| !! | GATCAAAGCATTCATTTTGT+AGG | - | chr2.3:1725764-1725783 | MS.gene86352:intron | 30.0% |
| !!! | GTGTGTTTTGTTTCATTCTT+TGG | - | chr2.3:1723974-1723993 | MS.gene86352:CDS | 30.0% |
| AAAACAGAACAAGTAGGAGA+AGG | + | chr2.3:1723832-1723851 | None:intergenic | 35.0% | |
| AAAAGGAAAAAGAGAGGTTG+TGG | + | chr2.3:1723872-1723891 | None:intergenic | 35.0% | |
| AAATTGCTAGGTCCATTTGA+AGG | - | chr2.3:1723509-1723528 | MS.gene86352:intron | 35.0% | |
| AACATCAAGCCACTATAGTT+TGG | - | chr2.3:1723693-1723712 | MS.gene86352:intron | 35.0% | |
| AATATAGGATACCTTGATCC+TGG | + | chr2.3:1725214-1725233 | None:intergenic | 35.0% | |
| AATTATGTGACAGTGAAGGT+TGG | - | chr2.3:1725058-1725077 | MS.gene86352:intron | 35.0% | |
| ACAACTGCTCTTAAATTGAC+AGG | + | chr2.3:1725172-1725191 | None:intergenic | 35.0% | |
| ACCCTTTGCCTCTAATAAAA+GGG | - | chr2.3:1724947-1724966 | MS.gene86352:intron | 35.0% | |
| ATGGAGCAAAAAGAACAAAC+CGG | + | chr2.3:1723174-1723193 | None:intergenic | 35.0% | |
| ATTCATGCAAGTTGCAAAGA+AGG | + | chr2.3:1723215-1723234 | None:intergenic | 35.0% | |
| ATTCCGTGACACTGTAAAAT+TGG | + | chr2.3:1725415-1725434 | None:intergenic | 35.0% | |
| CAAGCTACCAACCTTAATTA+AGG | + | chr2.3:1725023-1725042 | None:intergenic | 35.0% | |
| CTGATAGATGTCTAAACATG+AGG | + | chr2.3:1723554-1723573 | None:intergenic | 35.0% | |
| GAACAGTTATCTCAGTTTGT+TGG | - | chr2.3:1725926-1725945 | MS.gene86352:intron | 35.0% | |
| GATTTCATCTTACCCTTCAT+AGG | + | chr2.3:1725873-1725892 | None:intergenic | 35.0% | |
| GCTCTTAAATTGACAGGATA+TGG | + | chr2.3:1725166-1725185 | None:intergenic | 35.0% | |
| GTCAATTTAAGAGCAGTTGT+TGG | - | chr2.3:1725172-1725191 | MS.gene86352:intron | 35.0% | |
| GTGATTGAACATTAATCTGC+AGG | - | chr2.3:1724762-1724781 | MS.gene86352:intron | 35.0% | |
| GTTGCATTCAAATCCTATGA+AGG | - | chr2.3:1725857-1725876 | MS.gene86352:intron | 35.0% | |
| TCAGCAGAATATATTCCATG+TGG | + | chr2.3:1724117-1724136 | None:intergenic | 35.0% | |
| TGTAGATTGCTATAAGTGCA+TGG | - | chr2.3:1723242-1723261 | MS.gene86352:intron | 35.0% | |
| ! | ACCCTTTTATTAGAGGCAAA+GGG | + | chr2.3:1724951-1724970 | None:intergenic | 35.0% |
| ! | ACTCGACGAACTTTTGAATT+CGG | - | chr2.3:1723641-1723660 | MS.gene86352:intron | 35.0% |
| ! | CGTAGCTTTTGCAAAAATCA+CGG | - | chr2.3:1723328-1723347 | MS.gene86352:CDS | 35.0% |
| ! | TTTTACCACTGCATGAAATC+TGG | - | chr2.3:1725612-1725631 | MS.gene86352:intron | 35.0% |
| !! | ATAAAAGGGTGCTTGGATAT+AGG | - | chr2.3:1724961-1724980 | MS.gene86352:intron | 35.0% |
| !! | TAAAAGGGTGCTTGGATATA+GGG | - | chr2.3:1724962-1724981 | MS.gene86352:intron | 35.0% |
| AAGAGAGGTTGTGGAAAGAA+AGG | + | chr2.3:1723863-1723882 | None:intergenic | 40.0% | |
| AGAAGATGGTCCAGATGATT+GGG | - | chr2.3:1724806-1724825 | MS.gene86352:intron | 40.0% | |
| AGAATCCAGATTTCATGCAG+TGG | + | chr2.3:1725620-1725639 | None:intergenic | 40.0% | |
| ATAGTTTGGTTGCATGGACT+TGG | - | chr2.3:1723707-1723726 | MS.gene86352:intron | 40.0% | |
| CACCCTTTGCCTCTAATAAA+AGG | - | chr2.3:1724946-1724965 | MS.gene86352:intron | 40.0% | |
| GATGTAGTACACTGCAAGTA+TGG | - | chr2.3:1725791-1725810 | MS.gene86352:intron | 40.0% | |
| GATTGCTATAAGTGCATGGT+TGG | - | chr2.3:1723246-1723265 | MS.gene86352:intron | 40.0% | |
| TAATCTGCAGGGTTTGATGT+GGG | - | chr2.3:1724774-1724793 | MS.gene86352:intron | 40.0% | |
| TACACAGTTCCAAGAGAGAT+GGG | - | chr2.3:1725975-1725994 | MS.gene86352:intron | 40.0% | |
| TCCATGCAACCAAACTATAG+TGG | + | chr2.3:1723705-1723724 | None:intergenic | 40.0% | |
| TTAATCTGCAGGGTTTGATG+TGG | - | chr2.3:1724773-1724792 | MS.gene86352:intron | 40.0% | |
| TTACACAGTTCCAAGAGAGA+TGG | - | chr2.3:1725974-1725993 | MS.gene86352:intron | 40.0% | |
| ! | CACCCTTTTATTAGAGGCAA+AGG | + | chr2.3:1724952-1724971 | None:intergenic | 40.0% |
| ! | CTCGACGAACTTTTGAATTC+GGG | - | chr2.3:1723642-1723661 | MS.gene86352:intron | 40.0% |
| ! | GTGGCTTGATGTTTTCCTTT+AGG | + | chr2.3:1723686-1723705 | None:intergenic | 40.0% |
| ! | TCCAAGCACCCTTTTATTAG+AGG | + | chr2.3:1724958-1724977 | None:intergenic | 40.0% |
| !! | CAGATGGTTGGTACTTTTCA+AGG | - | chr2.3:1724883-1724902 | MS.gene86352:intron | 40.0% |
| !! | CTTTCTGGTTAGATTCCACA+TGG | - | chr2.3:1724099-1724118 | MS.gene86352:CDS | 40.0% |
| !! | GACTTGGTGATAATGGTTTG+AGG | - | chr2.3:1723723-1723742 | MS.gene86352:intron | 40.0% |
| !! | GCAAAGGGTGCTTACATATA+GGG | + | chr2.3:1724936-1724955 | None:intergenic | 40.0% |
| !! | TTGCATGGACTTGGTGATAA+TGG | - | chr2.3:1723716-1723735 | MS.gene86352:intron | 40.0% |
| AAGTGTCACATGAAGCGAGA+AGG | - | chr2.3:1725374-1725393 | MS.gene86352:intron | 45.0% | |
| AATCTGCAGGGTTTGATGTG+GGG | - | chr2.3:1724775-1724794 | MS.gene86352:intron | 45.0% | |
| ACACATGTAGTGAGGCCTAA+AGG | - | chr2.3:1723668-1723687 | MS.gene86352:intron | 45.0% | |
| ACCTGGCTTAGTTCAAGGTT+GGG | - | chr2.3:1726008-1726027 | MS.gene86352:intron | 45.0% | |
| AGTCACGCGCATTCTCATAT+CGG | - | chr2.3:1723146-1723165 | MS.gene86352:CDS | 45.0% | |
| AGTTCAAGGTTGGGACTTGA+AGG | - | chr2.3:1726017-1726036 | MS.gene86352:intron | 45.0% | |
| CAGAAGATGGTCCAGATGAT+TGG | - | chr2.3:1724805-1724824 | MS.gene86352:intron | 45.0% | |
| CTCAATCCTTAAGCTCAGCA+GGG | - | chr2.3:1725825-1725844 | MS.gene86352:intron | 45.0% | |
| GAAACTTCACCCATCTCTCT+TGG | + | chr2.3:1725987-1726006 | None:intergenic | 45.0% | |
| GCCACTATAGTTTGGTTGCA+TGG | - | chr2.3:1723701-1723720 | MS.gene86352:intron | 45.0% | |
| GTAGGAGAAGGAATCACCAA+TGG | + | chr2.3:1723820-1723839 | None:intergenic | 45.0% | |
| GTTGGAATCTGCTATCGTGT+AGG | - | chr2.3:1725332-1725351 | MS.gene86352:intron | 45.0% | |
| TCTGCAACATGCTATGCCAT+GGG | - | chr2.3:1725121-1725140 | MS.gene86352:intron | 45.0% | |
| TGCTATCGTGTAGGAGCTTA+GGG | - | chr2.3:1725341-1725360 | MS.gene86352:intron | 45.0% | |
| TGCTTACATATAGGGACGGA+GGG | + | chr2.3:1724928-1724947 | None:intergenic | 45.0% | |
| TGCTTGGATATAGGGACAGA+GGG | - | chr2.3:1724970-1724989 | MS.gene86352:intron | 45.0% | |
| TTTCCACCTGGCTTAGTTCA+AGG | - | chr2.3:1726003-1726022 | MS.gene86352:intron | 45.0% | |
| ! | AAAACCACCAAGTATCGCCA+CGG | + | chr2.3:1724660-1724679 | None:intergenic | 45.0% |
| ! | AGGGTGCTTACATATAGGGA+CGG | + | chr2.3:1724932-1724951 | None:intergenic | 45.0% |
| !! | GAAAAGTACCAACCATCTGC+TGG | + | chr2.3:1724882-1724901 | None:intergenic | 45.0% |
| !! | GCCTCTAATAAAAGGGTGCT+TGG | - | chr2.3:1724954-1724973 | MS.gene86352:intron | 45.0% |
| !! | GGCAAAGGGTGCTTACATAT+AGG | + | chr2.3:1724937-1724956 | None:intergenic | 45.0% |
| !! | TGTTGGTTTCTGATGCATGC+AGG | - | chr2.3:1725943-1725962 | MS.gene86352:intron | 45.0% |
| !! | AAATAAATTAACAAAAAATT+AGG | + | chr2.3:1724714-1724733 | None:intergenic | 5.0% |
| !!! | AATTTTTTGTTAATTTATTT+AGG | - | chr2.3:1724714-1724733 | MS.gene86352:intron | 5.0% |
| !!! | ATTTTTTGTTAATTTATTTA+GGG | - | chr2.3:1724715-1724734 | MS.gene86352:intron | 5.0% |
| ACAGCAATGCGACAAGCTAG+AGG | + | chr2.3:1723478-1723497 | None:intergenic | 50.0% | |
| AGAGCAGTTGTTGGACTCAG+TGG | - | chr2.3:1725181-1725200 | MS.gene86352:intron | 50.0% | |
| AGATGGGTGAAGTTTCCACC+TGG | - | chr2.3:1725991-1726010 | MS.gene86352:intron | 50.0% | |
| AGATGGTCCAGATGATTGGG+AGG | - | chr2.3:1724809-1724828 | MS.gene86352:intron | 50.0% | |
| ATCTGCAGGGTTTGATGTGG+GGG | - | chr2.3:1724776-1724795 | MS.gene86352:intron | 50.0% | |
| CAACATGCTATGCCATGGGA+AGG | - | chr2.3:1725125-1725144 | MS.gene86352:intron | 50.0% | |
| CAACCTTGAACTAAGCCAGG+TGG | + | chr2.3:1726009-1726028 | None:intergenic | 50.0% | |
| CACCTGGCTTAGTTCAAGGT+TGG | - | chr2.3:1726007-1726026 | MS.gene86352:intron | 50.0% | |
| CTCTGCAACATGCTATGCCA+TGG | - | chr2.3:1725120-1725139 | MS.gene86352:intron | 50.0% | |
| CTGCAGCTCATCTCAGTTGT+TGG | - | chr2.3:1724431-1724450 | MS.gene86352:intron | 50.0% | |
| CTGCTATCGTGTAGGAGCTT+AGG | - | chr2.3:1725340-1725359 | MS.gene86352:intron | 50.0% | |
| GATGGTCCAGATGATTGGGA+GGG | - | chr2.3:1724810-1724829 | MS.gene86352:intron | 50.0% | |
| GCCATTTCCATACCTTCCCA+TGG | + | chr2.3:1725140-1725159 | None:intergenic | 50.0% | |
| GCTCAATCCTTAAGCTCAGC+AGG | - | chr2.3:1725824-1725843 | MS.gene86352:intron | 50.0% | |
| GTGACAGTGAAGGTTGGCAT+TGG | - | chr2.3:1725064-1725083 | MS.gene86352:intron | 50.0% | |
| GTGCATGGTTGGAGTCACAA+CGG | - | chr2.3:1723257-1723276 | MS.gene86352:intron | 50.0% | |
| GTGCTTACATATAGGGACGG+AGG | + | chr2.3:1724929-1724948 | None:intergenic | 50.0% | |
| GTGCTTGGATATAGGGACAG+AGG | - | chr2.3:1724969-1724988 | MS.gene86352:intron | 50.0% | |
| GTTTCTGATGCATGCAGGCT+TGG | - | chr2.3:1725948-1725967 | MS.gene86352:intron | 50.0% | |
| TCCAAACCCTCCCAATCATC+TGG | + | chr2.3:1724819-1724838 | None:intergenic | 50.0% | |
| TCCAGATGATTGGGAGGGTT+TGG | - | chr2.3:1724815-1724834 | MS.gene86352:intron | 50.0% | |
| TCCCAACCTTGAACTAAGCC+AGG | + | chr2.3:1726012-1726031 | None:intergenic | 50.0% | |
| TCGAAACCCTGCTGAGCTTA+AGG | + | chr2.3:1725834-1725853 | None:intergenic | 50.0% | |
| TCGGGAAGACACATGTAGTG+AGG | - | chr2.3:1723660-1723679 | MS.gene86352:intron | 50.0% | |
| TGCATGGTTGGAGTCACAAC+GGG | - | chr2.3:1723258-1723277 | MS.gene86352:intron | 50.0% | |
| TGCTATGCCATGGGAAGGTA+TGG | - | chr2.3:1725130-1725149 | MS.gene86352:intron | 50.0% | |
| TTGTCAACAGAGCCAGCAGA+TGG | - | chr2.3:1724867-1724886 | MS.gene86352:intron | 50.0% | |
| ! | AAACCACCAAGTATCGCCAC+GGG | + | chr2.3:1724659-1724678 | None:intergenic | 50.0% |
| ! | ACAGTGAAGGTTGGCATTGG+AGG | - | chr2.3:1725067-1725086 | MS.gene86352:intron | 50.0% |
| ! | CAGTGAAGGTTGGCATTGGA+GGG | - | chr2.3:1725068-1725087 | MS.gene86352:intron | 50.0% |
| ! | GCCATGGGAAGGTATGGAAA+TGG | - | chr2.3:1725136-1725155 | MS.gene86352:intron | 50.0% |
| CAACAGAGCCAGCAGATGGT+TGG | - | chr2.3:1724871-1724890 | MS.gene86352:intron | 55.0% | |
| CAGTTGTTGGACTCAGTGGC+TGG | - | chr2.3:1725185-1725204 | MS.gene86352:intron | 55.0% | |
| GTGGGGGAGCTTTCAGAAGA+TGG | - | chr2.3:1724792-1724811 | MS.gene86352:intron | 55.0% | |
| ! | GGCATTGGAGGGTTCAGCAT+GGG | - | chr2.3:1725079-1725098 | MS.gene86352:intron | 55.0% |
| ! | TGGCATTGGAGGGTTCAGCA+TGG | - | chr2.3:1725078-1725097 | MS.gene86352:intron | 55.0% |
| !! | GCGCATTCTCATATCGGCTC+CGG | - | chr2.3:1723152-1723171 | MS.gene86352:CDS | 55.0% |
| ! | ACCAAGTATCGCCACGGGAC+GGG | + | chr2.3:1724654-1724673 | None:intergenic | 60.0% |
| ! | CACCAAGTATCGCCACGGGA+CGG | + | chr2.3:1724655-1724674 | None:intergenic | 60.0% |
| !! | GTGGCTGGCTTCCAGGATCA+AGG | - | chr2.3:1725200-1725219 | MS.gene86352:intron | 60.0% |
| ACCCGTCCCGTGGCGATACT+TGG | - | chr2.3:1724650-1724669 | MS.gene86352:intron | 65.0% | |
| ACGGGACGGGTAGGAGCAGT+AGG | + | chr2.3:1724641-1724660 | None:intergenic | 65.0% | |
| AGTATCGCCACGGGACGGGT+AGG | + | chr2.3:1724650-1724669 | None:intergenic | 65.0% | |
| CGGGACGGGTAGGAGCAGTA+GGG | + | chr2.3:1724640-1724659 | None:intergenic | 65.0% | |
| CGTCCCGTGGCGATACTTGG+TGG | - | chr2.3:1724653-1724672 | MS.gene86352:intron | 65.0% | |
| TACTGCTCCTACCCGTCCCG+TGG | - | chr2.3:1724640-1724659 | MS.gene86352:intron | 65.0% | |
| !! | GGACTCAGTGGCTGGCTTCC+AGG | - | chr2.3:1725193-1725212 | MS.gene86352:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 1723143 | 1726052 | 1723143 | ID=MS.gene86352 |
| chr2.3 | mRNA | 1723143 | 1726052 | 1723143 | ID=MS.gene86352.t1;Parent=MS.gene86352 |
| chr2.3 | exon | 1726022 | 1726052 | 1726022 | ID=MS.gene86352.t1.exon1;Parent=MS.gene86352.t1 |
| chr2.3 | CDS | 1726022 | 1726052 | 1726022 | ID=cds.MS.gene86352.t1;Parent=MS.gene86352.t1 |
| chr2.3 | exon | 1725451 | 1725565 | 1725451 | ID=MS.gene86352.t1.exon2;Parent=MS.gene86352.t1 |
| chr2.3 | CDS | 1725451 | 1725565 | 1725451 | ID=cds.MS.gene86352.t1;Parent=MS.gene86352.t1 |
| chr2.3 | exon | 1724722 | 1724758 | 1724722 | ID=MS.gene86352.t1.exon3;Parent=MS.gene86352.t1 |
| chr2.3 | CDS | 1724722 | 1724758 | 1724722 | ID=cds.MS.gene86352.t1;Parent=MS.gene86352.t1 |
| chr2.3 | exon | 1724503 | 1724572 | 1724503 | ID=MS.gene86352.t1.exon4;Parent=MS.gene86352.t1 |
| chr2.3 | CDS | 1724503 | 1724572 | 1724503 | ID=cds.MS.gene86352.t1;Parent=MS.gene86352.t1 |
| chr2.3 | exon | 1724307 | 1724411 | 1724307 | ID=MS.gene86352.t1.exon5;Parent=MS.gene86352.t1 |
| chr2.3 | CDS | 1724307 | 1724411 | 1724307 | ID=cds.MS.gene86352.t1;Parent=MS.gene86352.t1 |
| chr2.3 | exon | 1723974 | 1724124 | 1723974 | ID=MS.gene86352.t1.exon6;Parent=MS.gene86352.t1 |
| chr2.3 | CDS | 1723974 | 1724124 | 1723974 | ID=cds.MS.gene86352.t1;Parent=MS.gene86352.t1 |
| chr2.3 | exon | 1723759 | 1723841 | 1723759 | ID=MS.gene86352.t1.exon7;Parent=MS.gene86352.t1 |
| chr2.3 | CDS | 1723759 | 1723841 | 1723759 | ID=cds.MS.gene86352.t1;Parent=MS.gene86352.t1 |
| chr2.3 | exon | 1723316 | 1723409 | 1723316 | ID=MS.gene86352.t1.exon8;Parent=MS.gene86352.t1 |
| chr2.3 | CDS | 1723316 | 1723409 | 1723316 | ID=cds.MS.gene86352.t1;Parent=MS.gene86352.t1 |
| chr2.3 | exon | 1723143 | 1723230 | 1723143 | ID=MS.gene86352.t1.exon9;Parent=MS.gene86352.t1 |
| chr2.3 | CDS | 1723143 | 1723230 | 1723143 | ID=cds.MS.gene86352.t1;Parent=MS.gene86352.t1 |
| Gene Sequence |
| Protein sequence |
