Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026971.t1 | XP_003618274.1 | 90.1 | 1178 | 29 | 2 | 1 | 1090 | 1 | 1178 | 0.00E+00 | 2051.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026971.t1 | Q9LK90 | 71.1 | 1089 | 273 | 5 | 6 | 1062 | 6 | 1084 | 0.0e+00 | 1546.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026971.t1 | G7KI91 | 90.1 | 1178 | 29 | 2 | 1 | 1090 | 1 | 1178 | 0.0e+00 | 2051.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene99985 | MS.gene026971 | PPI |
MS.gene052688 | MS.gene026971 | PPI |
MS.gene053922 | MS.gene026971 | PPI |
MS.gene51514 | MS.gene026971 | PPI |
MS.gene37375 | MS.gene026971 | PPI |
MS.gene016359 | MS.gene026971 | PPI |
MS.gene032714 | MS.gene026971 | PPI |
MS.gene59811 | MS.gene026971 | PPI |
MS.gene31443 | MS.gene026971 | PPI |
MS.gene026971 | MS.gene07818 | PPI |
MS.gene011235 | MS.gene026971 | PPI |
MS.gene055786 | MS.gene026971 | PPI |
MS.gene026971 | MS.gene97957 | PPI |
MS.gene051959 | MS.gene026971 | PPI |
MS.gene042689 | MS.gene026971 | PPI |
MS.gene026971 | MS.gene78731 | PPI |
MS.gene008820 | MS.gene026971 | PPI |
MS.gene85232 | MS.gene026971 | PPI |
MS.gene58552 | MS.gene026971 | PPI |
MS.gene026971 | MS.gene25291 | PPI |
MS.gene026971 | MS.gene056466 | PPI |
MS.gene77800 | MS.gene026971 | PPI |
MS.gene026971 | MS.gene67744 | PPI |
MS.gene051960 | MS.gene026971 | PPI |
MS.gene63097 | MS.gene026971 | PPI |
MS.gene026971 | MS.gene76159 | PPI |
MS.gene026971 | MS.gene80146 | PPI |
MS.gene057001 | MS.gene026971 | PPI |
MS.gene028874 | MS.gene026971 | PPI |
MS.gene94056 | MS.gene026971 | PPI |
MS.gene93080 | MS.gene026971 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026971.t1 | MTR_6g006910 | 89.813 | 1178 | 32 | 3 | 1 | 1090 | 1 | 1178 | 0.0 | 2160 |
MS.gene026971.t1 | MTR_8g069920 | 63.205 | 1117 | 354 | 9 | 3 | 1071 | 2 | 1109 | 0.0 | 1473 |
MS.gene026971.t1 | MTR_4g112430 | 62.364 | 1100 | 361 | 8 | 1 | 1062 | 1 | 1085 | 0.0 | 1444 |
MS.gene026971.t1 | MTR_0021s0360 | 62.283 | 1095 | 357 | 5 | 6 | 1062 | 2 | 1078 | 0.0 | 1412 |
MS.gene026971.t1 | MTR_3g037330 | 61.870 | 1091 | 364 | 8 | 7 | 1062 | 4 | 1077 | 0.0 | 1395 |
MS.gene026971.t1 | MTR_3g037330 | 64.770 | 1002 | 335 | 5 | 62 | 1062 | 23 | 1007 | 0.0 | 1367 |
MS.gene026971.t1 | MTR_2g099690 | 54.709 | 1115 | 427 | 8 | 6 | 1062 | 8 | 1102 | 0.0 | 1251 |
MS.gene026971.t1 | MTR_2g099690 | 52.723 | 918 | 356 | 8 | 6 | 865 | 8 | 905 | 0.0 | 957 |
MS.gene026971.t1 | MTR_8g018290 | 57.309 | 773 | 290 | 4 | 319 | 1065 | 3 | 761 | 0.0 | 914 |
MS.gene026971.t1 | MTR_8g018290 | 57.309 | 773 | 297 | 4 | 319 | 1065 | 3 | 768 | 0.0 | 912 |
MS.gene026971.t1 | MTR_5g037210 | 45.069 | 1014 | 519 | 11 | 60 | 1065 | 76 | 1059 | 0.0 | 902 |
MS.gene026971.t1 | MTR_2g099690 | 51.076 | 883 | 354 | 8 | 6 | 830 | 8 | 870 | 0.0 | 893 |
MS.gene026971.t1 | MTR_7g073480 | 36.555 | 1045 | 567 | 20 | 72 | 1059 | 192 | 1197 | 0.0 | 634 |
MS.gene026971.t1 | MTR_8g044210 | 38.224 | 1002 | 551 | 19 | 77 | 1062 | 141 | 1090 | 0.0 | 628 |
MS.gene026971.t1 | MTR_3g007240 | 36.446 | 996 | 561 | 15 | 77 | 1062 | 192 | 1125 | 0.0 | 616 |
MS.gene026971.t1 | MTR_2g090610 | 33.200 | 1003 | 554 | 29 | 66 | 1057 | 61 | 958 | 5.36e-162 | 509 |
MS.gene026971.t1 | MTR_2g090610 | 33.720 | 949 | 522 | 26 | 66 | 1004 | 61 | 912 | 5.03e-158 | 493 |
MS.gene026971.t1 | MTR_8g062150 | 47.852 | 512 | 239 | 8 | 60 | 565 | 96 | 585 | 8.94e-146 | 449 |
MS.gene026971.t1 | MTR_3g007240 | 36.154 | 780 | 433 | 14 | 77 | 846 | 192 | 916 | 1.18e-139 | 444 |
MS.gene026971.t1 | MTR_2g056040 | 67.213 | 61 | 20 | 0 | 660 | 720 | 4 | 64 | 9.18e-22 | 90.9 |
MS.gene026971.t1 | MTR_2g105830 | 23.887 | 494 | 255 | 16 | 425 | 897 | 480 | 873 | 6.50e-16 | 83.6 |
MS.gene026971.t1 | MTR_4g008170 | 21.827 | 646 | 340 | 24 | 425 | 1038 | 491 | 1003 | 3.47e-14 | 78.2 |
MS.gene026971.t1 | MTR_4g008170 | 21.827 | 646 | 340 | 24 | 425 | 1038 | 498 | 1010 | 3.57e-14 | 77.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026971.t1 | AT3G27870 | 71.074 | 1089 | 273 | 5 | 6 | 1062 | 6 | 1084 | 0.0 | 1638 |
MS.gene026971.t1 | AT3G27870 | 71.241 | 991 | 243 | 5 | 6 | 964 | 6 | 986 | 0.0 | 1479 |
MS.gene026971.t1 | AT1G68710 | 62.523 | 1110 | 367 | 7 | 1 | 1071 | 1 | 1100 | 0.0 | 1450 |
MS.gene026971.t1 | AT1G68710 | 62.523 | 1110 | 367 | 7 | 1 | 1071 | 1 | 1100 | 0.0 | 1450 |
MS.gene026971.t1 | AT3G25610 | 62.500 | 1096 | 361 | 5 | 2 | 1062 | 4 | 1084 | 0.0 | 1436 |
MS.gene026971.t1 | AT1G68710 | 61.092 | 1136 | 367 | 8 | 1 | 1071 | 1 | 1126 | 0.0 | 1435 |
MS.gene026971.t1 | AT1G26130 | 61.651 | 1090 | 372 | 5 | 6 | 1062 | 10 | 1086 | 0.0 | 1415 |
MS.gene026971.t1 | AT1G26130 | 61.651 | 1090 | 372 | 5 | 6 | 1062 | 10 | 1086 | 0.0 | 1415 |
MS.gene026971.t1 | AT1G26130 | 61.651 | 1090 | 372 | 5 | 6 | 1062 | 10 | 1086 | 0.0 | 1415 |
MS.gene026971.t1 | AT3G27870 | 73.090 | 903 | 233 | 4 | 160 | 1062 | 1 | 893 | 0.0 | 1412 |
MS.gene026971.t1 | AT1G26130 | 61.651 | 1090 | 371 | 6 | 6 | 1062 | 10 | 1085 | 0.0 | 1410 |
MS.gene026971.t1 | AT1G13210 | 60.128 | 1096 | 392 | 5 | 1 | 1062 | 1 | 1085 | 0.0 | 1393 |
MS.gene026971.t1 | AT1G72700 | 53.697 | 1136 | 449 | 9 | 6 | 1085 | 7 | 1121 | 0.0 | 1237 |
MS.gene026971.t1 | AT1G17500 | 55.596 | 1099 | 427 | 9 | 6 | 1062 | 7 | 1086 | 0.0 | 1237 |
MS.gene026971.t1 | AT1G17500 | 55.596 | 1099 | 427 | 9 | 6 | 1062 | 7 | 1086 | 0.0 | 1237 |
MS.gene026971.t1 | AT1G72700 | 53.697 | 1136 | 449 | 9 | 6 | 1085 | 7 | 1121 | 0.0 | 1237 |
MS.gene026971.t1 | AT1G72700 | 53.697 | 1136 | 449 | 9 | 6 | 1085 | 7 | 1121 | 0.0 | 1237 |
MS.gene026971.t1 | AT1G54280 | 55.188 | 1118 | 419 | 13 | 12 | 1065 | 13 | 1112 | 0.0 | 1228 |
MS.gene026971.t1 | AT1G54280 | 55.188 | 1118 | 419 | 13 | 12 | 1065 | 13 | 1112 | 0.0 | 1228 |
MS.gene026971.t1 | AT1G54280 | 55.188 | 1118 | 419 | 13 | 12 | 1065 | 13 | 1112 | 0.0 | 1228 |
MS.gene026971.t1 | AT3G13900 | 53.833 | 1135 | 442 | 9 | 12 | 1084 | 13 | 1127 | 0.0 | 1228 |
MS.gene026971.t1 | AT3G13900 | 54.097 | 952 | 355 | 9 | 12 | 901 | 13 | 944 | 0.0 | 1021 |
MS.gene026971.t1 | AT3G13900 | 53.043 | 920 | 350 | 9 | 12 | 869 | 13 | 912 | 0.0 | 957 |
MS.gene026971.t1 | AT1G59820 | 43.563 | 1072 | 535 | 14 | 27 | 1062 | 26 | 1063 | 0.0 | 910 |
MS.gene026971.t1 | AT5G04930 | 38.400 | 1000 | 527 | 15 | 77 | 1058 | 139 | 1067 | 0.0 | 633 |
MS.gene026971.t1 | AT5G44240 | 33.566 | 1004 | 551 | 28 | 66 | 1058 | 61 | 959 | 2.00e-164 | 515 |
MS.gene026971.t1 | AT5G44240 | 33.566 | 1004 | 551 | 28 | 66 | 1058 | 93 | 991 | 6.74e-164 | 514 |
Find 216 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAAAATCTTTACTCATTTAT+TGG | 0.111248 | 6.2:+2205237 | MS.gene026971:CDS |
CATTTGGATTTACCCTATTT+TGG | 0.181690 | 6.2:+2209583 | MS.gene026971:CDS |
CATATGCTTCAAACCAAAAT+AGG | 0.183722 | 6.2:-2209596 | None:intergenic |
TAATGTATACTTGTGCAATT+TGG | 0.185099 | 6.2:+2210556 | MS.gene026971:CDS |
CCGTATATTACGATCCTAAA+AGG | 0.197963 | 6.2:+2205580 | MS.gene026971:CDS |
TCAGCTTAGAATCTCTTAAA+AGG | 0.228754 | 6.2:-2205308 | None:intergenic |
AAATATGCAGGTTACAAAAT+TGG | 0.259678 | 6.2:+2208507 | MS.gene026971:intron |
GAAAGAGATTTGATACTTCT+TGG | 0.266465 | 6.2:+2207087 | MS.gene026971:CDS |
CTTACGCGAGCTTTCTGTTT+TGG | 0.284482 | 6.2:-2208409 | None:intergenic |
GTCTGCTGCTAAAGAGGTTT+TGG | 0.285898 | 6.2:-2207028 | None:intergenic |
CATAATACATTTCTTGATCT+TGG | 0.290925 | 6.2:-2205722 | None:intergenic |
AAGACGAGTTGTCGCTTCTA+AGG | 0.302864 | 6.2:-2205157 | None:intergenic |
TCGCTACCGGTAATCGCTTT+AGG | 0.309238 | 6.2:+2209684 | MS.gene026971:CDS |
GGTATTGACTGGGGACAAAA+TGG | 0.309305 | 6.2:+2207685 | MS.gene026971:CDS |
AGAGATGGTCATTCACAAAT+TGG | 0.321822 | 6.2:+2203655 | MS.gene026971:CDS |
AACAGAAAGGTTCAGGTATA+TGG | 0.323042 | 6.2:+2204952 | MS.gene026971:CDS |
AAAATCTCTGCAAAGGTTTA+GGG | 0.323414 | 6.2:+2205188 | MS.gene026971:CDS |
GCACCTTTGGTGGCTGTGAT+TGG | 0.324884 | 6.2:+2203904 | MS.gene026971:CDS |
GAAGCAATTCAGTTGAAATA+TGG | 0.326840 | 6.2:+2203727 | MS.gene026971:CDS |
ATCGACACATAAAGTGATAT+TGG | 0.327451 | 6.2:-2205663 | None:intergenic |
GGCTGTGATTGGTGCTACTA+TGG | 0.329930 | 6.2:+2203915 | MS.gene026971:CDS |
TTTAAGTATTGCTGCACCTT+TGG | 0.333710 | 6.2:+2203891 | MS.gene026971:CDS |
GAGTTTGTCAAATGTTCAAT+AGG | 0.333869 | 6.2:+2205855 | MS.gene026971:CDS |
ATGCTTCAGGAGGCTGATAT+TGG | 0.337876 | 6.2:+2208589 | MS.gene026971:CDS |
ACCGGTCTTGTCAGACAATA+TGG | 0.338776 | 6.2:-2205811 | None:intergenic |
GTTGAGGATAGACTTCAAAA+AGG | 0.342658 | 6.2:+2207120 | MS.gene026971:CDS |
GCAATACTTAAAGCTGTATA+AGG | 0.343435 | 6.2:-2203880 | None:intergenic |
TCATTTGGCTTGATAATTGA+TGG | 0.351837 | 6.2:+2208292 | MS.gene026971:CDS |
GTTGAAACAATGAATCTTGA+TGG | 0.354343 | 6.2:+2205108 | MS.gene026971:CDS |
GTATTCTCTCGACAACTCTA+TGG | 0.359733 | 6.2:+2208327 | MS.gene026971:CDS |
GAATGATGTCGGTATGCTTC+AGG | 0.361534 | 6.2:+2208576 | MS.gene026971:CDS |
AATAGATAAAGTTGTCTTCC+CGG | 0.362703 | 6.2:-2208542 | None:intergenic |
ATACAAAGAAAACAAGTAGA+AGG | 0.362950 | 6.2:+2210855 | MS.gene026971:CDS |
TTCAGCTGGACTCGGATTAT+CGG | 0.364241 | 6.2:+2210414 | MS.gene026971:CDS |
GGGAAGACAACTTTATCTAT+TGG | 0.366898 | 6.2:+2208544 | MS.gene026971:CDS |
TGTGGTGTTGTCATCTTTAC+CGG | 0.373998 | 6.2:+2205348 | MS.gene026971:CDS |
TTGACTGCCCTTATGTTGTA+TGG | 0.380516 | 6.2:+2205630 | MS.gene026971:CDS |
TTTGATATGATTATTAGTTT+CGG | 0.384412 | 6.2:-2206911 | None:intergenic |
GTGCTTCTGTCATATGTTGC+CGG | 0.385686 | 6.2:+2208380 | MS.gene026971:CDS |
AGTTTGTCAAATGTTCAATA+GGG | 0.387467 | 6.2:+2205856 | MS.gene026971:CDS |
GGAGAGGATAGTTCTTCATT+TGG | 0.390404 | 6.2:+2208277 | MS.gene026971:CDS |
TCAGATATCCATACAACATA+AGG | 0.391153 | 6.2:-2205638 | None:intergenic |
GGAAAAGTCATTCTTTAAGT+TGG | 0.391160 | 6.2:+2208348 | MS.gene026971:CDS |
ATCCGGTGACTCGGCTTCAT+AGG | 0.400901 | 6.2:-2206165 | None:intergenic |
CTGTTGATCCTCCATCAAAA+AGG | 0.401018 | 6.2:+2205397 | MS.gene026971:CDS |
GGCGAACAACAGAAAGGTTC+AGG | 0.403431 | 6.2:+2204945 | MS.gene026971:CDS |
AATGTATACTTGTGCAATTT+GGG | 0.405550 | 6.2:+2210557 | MS.gene026971:CDS |
CTAAAGAAGCTGTGGAAGAT+TGG | 0.409619 | 6.2:+2203938 | MS.gene026971:CDS |
TTTGGGGTAGTATTGTCCTT+TGG | 0.410431 | 6.2:+2210640 | MS.gene026971:CDS |
GGTTACAAAATTGGTGAAGT+TGG | 0.416390 | 6.2:+2208516 | MS.gene026971:intron |
GAAGCATATGCTTCATTCTC+CGG | 0.421961 | 6.2:+2209609 | MS.gene026971:CDS |
CTAAGGCGGGAATCAAGTTA+TGG | 0.422480 | 6.2:+2207663 | MS.gene026971:CDS |
CACCCCTTTCTATATCTAGA+AGG | 0.428640 | 6.2:+2210375 | MS.gene026971:CDS |
GACAACACCACATATATATT+CGG | 0.429734 | 6.2:-2205337 | None:intergenic |
GATAATTGATGGGAGGTCAT+TGG | 0.434044 | 6.2:+2208303 | MS.gene026971:CDS |
AGAACTATCCTCTCCTGTAT+TGG | 0.437928 | 6.2:-2208269 | None:intergenic |
ATCTTGTCTCCACAAATGTA+TGG | 0.439622 | 6.2:-2204981 | None:intergenic |
AAATTGGTGAAGTTGGAAAC+CGG | 0.439819 | 6.2:+2208523 | MS.gene026971:CDS |
AAGTATTGCTGCACCTTTGG+TGG | 0.442950 | 6.2:+2203894 | MS.gene026971:CDS |
GACTCTCAGAAGACAGTTAA+GGG | 0.444056 | 6.2:+2206002 | MS.gene026971:CDS |
ACTCTTCTTCGCCAACTTCA+CGG | 0.446311 | 6.2:-2206975 | None:intergenic |
GAGCGTTTGTTGTTGGTACA+TGG | 0.448456 | 6.2:+2209385 | MS.gene026971:CDS |
AGTTGATTGAAAGTGCCATT+TGG | 0.457707 | 6.2:-2210590 | None:intergenic |
ATGACAAATGCGGCTTCATC+CGG | 0.457982 | 6.2:-2206182 | None:intergenic |
TTGATTTAAGACGGAATTTG+TGG | 0.460492 | 6.2:-2210484 | None:intergenic |
TAAAATATTGCTCCTATGCA+AGG | 0.462582 | 6.2:+2206576 | MS.gene026971:CDS |
GATATTGGAGTTGGAATTAG+TGG | 0.463107 | 6.2:+2208604 | MS.gene026971:CDS |
ATATGCTTCAAACCAAAATA+GGG | 0.463544 | 6.2:-2209595 | None:intergenic |
GGACTCTCAGAAGACAGTTA+AGG | 0.465480 | 6.2:+2206001 | MS.gene026971:CDS |
AAAGATGAACGCATAATGAA+TGG | 0.467223 | 6.2:+2206035 | MS.gene026971:CDS |
ATCAAAAGATATTCCGAGGC+AGG | 0.467347 | 6.2:+2206928 | MS.gene026971:CDS |
TTACATTCTCTTTAGTACCT+TGG | 0.467428 | 6.2:+2205452 | MS.gene026971:CDS |
AAGAATTTCTCTATGATGTC+CGG | 0.469049 | 6.2:-2206080 | None:intergenic |
TACTCCTTCTAGATATAGAA+AGG | 0.469407 | 6.2:-2210379 | None:intergenic |
AGTTTACCTTGAACTTGTCT+AGG | 0.470452 | 6.2:-2210906 | None:intergenic |
AAAACACCTAAAGCGATTAC+CGG | 0.473982 | 6.2:-2209690 | None:intergenic |
ATCAAGTTATGGGTATTGAC+TGG | 0.475457 | 6.2:+2207674 | MS.gene026971:CDS |
ATGGCAAGTGATTATTCAAT+CGG | 0.478262 | 6.2:+2209346 | MS.gene026971:CDS |
TAATATACGGTTGTTTCGTC+CGG | 0.478371 | 6.2:-2205567 | None:intergenic |
AGAAGATTAGCAAGGAACTA+AGG | 0.483178 | 6.2:-2210455 | None:intergenic |
GAAAATGATATTAATAATGA+TGG | 0.483676 | 6.2:+2205519 | MS.gene026971:CDS |
ACAACAAACGCTCCAGAAAA+CGG | 0.485211 | 6.2:-2209375 | None:intergenic |
CCGGACGCTTTATCTACATC+AGG | 0.485733 | 6.2:-2206134 | None:intergenic |
TTCTCTATGATGTCCGGATG+TGG | 0.487215 | 6.2:-2206074 | None:intergenic |
TCAGTATGGCCGTGGTATTA+CGG | 0.489050 | 6.2:+2205884 | MS.gene026971:CDS |
CATTTGGCTTGATAATTGAT+GGG | 0.489518 | 6.2:+2208293 | MS.gene026971:CDS |
CAGGAGGCTGATATTGGAGT+TGG | 0.491676 | 6.2:+2208595 | MS.gene026971:CDS |
ATGATGGAAGTTACAGAAGA+TGG | 0.496815 | 6.2:+2205535 | MS.gene026971:CDS |
CATGCAGTGTGATGTTTGAA+AGG | 0.497284 | 6.2:+2206860 | MS.gene026971:intron |
ATCGTTGTACGCGGCTTGAC+CGG | 0.498041 | 6.2:-2209628 | None:intergenic |
TCTGCAAAGGTTTAGGGCTA+TGG | 0.502294 | 6.2:+2205194 | MS.gene026971:CDS |
GTCATAGCTGCAAGGGAACT+CGG | 0.503538 | 6.2:+2206200 | MS.gene026971:CDS |
CTTCTCGATGCTTTCACGAG+AGG | 0.504872 | 6.2:-2208200 | None:intergenic |
ATGGATTAATGAACCACATC+CGG | 0.505526 | 6.2:+2206061 | MS.gene026971:CDS |
TAAGGCGGGAATCAAGTTAT+GGG | 0.505530 | 6.2:+2207664 | MS.gene026971:CDS |
ATGGAAACTGCAGTCAACAT+AGG | 0.505992 | 6.2:+2207704 | MS.gene026971:CDS |
TAGTGGTGCTGAAGGGATGC+AGG | 0.506181 | 6.2:+2208621 | MS.gene026971:CDS |
TTTCAATCAACTACTTCACT+TGG | 0.508627 | 6.2:+2210601 | MS.gene026971:CDS |
TTGGTGTCTACAGGCTGTAA+TGG | 0.509264 | 6.2:+2209327 | MS.gene026971:intron |
GTAATCACGTACCGTGAAGT+TGG | 0.509466 | 6.2:+2206964 | MS.gene026971:CDS |
TGTTGTTGGTACATGGCCAT+TGG | 0.514056 | 6.2:+2209392 | MS.gene026971:CDS |
ATCGAAAAGCTTGCTAAGGC+GGG | 0.515228 | 6.2:+2207650 | MS.gene026971:CDS |
CGTATATTACGATCCTAAAA+GGG | 0.515360 | 6.2:+2205581 | MS.gene026971:CDS |
GAAAGCAGAAGAAGATCAGA+AGG | 0.516551 | 6.2:-2205057 | None:intergenic |
TGTATTATGAAGAATCAGAT+AGG | 0.516787 | 6.2:+2205736 | MS.gene026971:CDS |
TGTGTTCTTTACTTCGCTAC+CGG | 0.517097 | 6.2:+2209671 | MS.gene026971:CDS |
TAGAGTTCTTAAACCTGCCT+CGG | 0.517462 | 6.2:-2206941 | None:intergenic |
CAGAAGATGGTATCTTCATC+CGG | 0.520128 | 6.2:+2205548 | MS.gene026971:CDS |
CATCGAGAAGCAAATTAATG+AGG | 0.521931 | 6.2:+2208213 | MS.gene026971:CDS |
TTAGATGTGTGCGCATGAGC+CGG | 0.522245 | 6.2:-2205759 | None:intergenic |
CATGAGTTGAATCATGAAAG+TGG | 0.524037 | 6.2:+2206263 | MS.gene026971:CDS |
TAGAGAACACCCTCTTCAGC+TGG | 0.524088 | 6.2:+2210400 | MS.gene026971:CDS |
TGGCCGTGGTATTACGGAAG+TGG | 0.525702 | 6.2:+2205890 | MS.gene026971:CDS |
TTCCTATGAAGCCGAGTCAC+CGG | 0.526450 | 6.2:+2206163 | MS.gene026971:CDS |
AAGCTGTGGAAGATTGGAGA+AGG | 0.527140 | 6.2:+2203944 | MS.gene026971:CDS |
GTCAAGCCGCGTACAACGAT+TGG | 0.527195 | 6.2:+2209631 | MS.gene026971:CDS |
CTGCATCCACAAGTGCATCT+CGG | 0.530590 | 6.2:-2207050 | None:intergenic |
TCTGAAGGCTTGATTTAAGA+CGG | 0.530684 | 6.2:-2210493 | None:intergenic |
ACAAAAGAGAGTTCCAATAC+AGG | 0.533909 | 6.2:+2208256 | MS.gene026971:CDS |
CAGATATCCATACAACATAA+GGG | 0.534041 | 6.2:-2205637 | None:intergenic |
TCCTATGCAAGGGTGCAGAC+AGG | 0.535799 | 6.2:+2206587 | MS.gene026971:CDS |
TTGCTAGGAGAGCAAAGGAC+AGG | 0.536005 | 6.2:+2205922 | MS.gene026971:CDS |
TTGGTTTCTTCAGGATATAG+AGG | 0.536615 | 6.2:+2204924 | MS.gene026971:intron |
ATCTCGGTCTGCTGCTAAAG+AGG | 0.537657 | 6.2:-2207034 | None:intergenic |
TCTGCTTTCGTCAAGCTATG+AGG | 0.538712 | 6.2:+2205071 | MS.gene026971:CDS |
CATCACTTTCGTGTCATGAC+CGG | 0.539072 | 6.2:-2205367 | None:intergenic |
TTTGAAAGGCTCTCACAATA+CGG | 0.540284 | 6.2:+2206874 | MS.gene026971:CDS |
TCTAATTTGAATGAAGAACT+TGG | 0.541056 | 6.2:+2205777 | MS.gene026971:CDS |
GCTGGACTCGGATTATCGGC+TGG | 0.541793 | 6.2:+2210418 | MS.gene026971:CDS |
TACTTTGACATGCAACTCCA+TGG | 0.543193 | 6.2:+2205833 | MS.gene026971:CDS |
GAGTTACCTAGACAAGTTCA+AGG | 0.545179 | 6.2:+2210900 | MS.gene026971:CDS |
ACTCCTTCTAGATATAGAAA+GGG | 0.545272 | 6.2:-2210378 | None:intergenic |
GGCTTCATAGGAAATTTCTC+CGG | 0.553124 | 6.2:-2206153 | None:intergenic |
TCTTGGCGCTACAGCAGTTG+AGG | 0.553646 | 6.2:+2207104 | MS.gene026971:CDS |
TGGTATTACGGAAGTGGAGA+AGG | 0.553661 | 6.2:+2205896 | MS.gene026971:CDS |
AGGATCTGTTGCAACGAAAG+AGG | 0.554186 | 6.2:-2205288 | None:intergenic |
TGCGGCTTCATCCGGTGACT+CGG | 0.555455 | 6.2:-2206174 | None:intergenic |
TTGGGTTGTGAATTGCCAAA+TGG | 0.557454 | 6.2:+2210575 | MS.gene026971:CDS |
TGGAAACTGCAGTCAACATA+GGG | 0.557559 | 6.2:+2207705 | MS.gene026971:CDS |
ACAACTTTATCTATTGGTGA+TGG | 0.559855 | 6.2:+2208550 | MS.gene026971:CDS |
ACACCCTCTTCAGCTGGACT+CGG | 0.560106 | 6.2:+2210406 | MS.gene026971:CDS |
TTATGAAGAATCAGATAGGC+CGG | 0.560725 | 6.2:+2205740 | MS.gene026971:CDS |
TGTATTATATCATGATACAT+TGG | 0.562354 | 6.2:-2210837 | None:intergenic |
GCAATTCAGTTGAAATATGG+TGG | 0.564083 | 6.2:+2203730 | MS.gene026971:CDS |
AAGTGGAGAAGGCACTTGCT+AGG | 0.566705 | 6.2:+2205907 | MS.gene026971:CDS |
GAGTCAGAGTAGCGATGTTG+TGG | 0.568196 | 6.2:+2205980 | MS.gene026971:CDS |
TATTACGATCCTAAAAGGGC+AGG | 0.568556 | 6.2:+2205585 | MS.gene026971:CDS |
TTCTGCCAGACTATGCCAAA+AGG | 0.568890 | 6.2:+2209725 | MS.gene026971:CDS |
TGAACATTTGACAAACTCCA+TGG | 0.568987 | 6.2:-2205850 | None:intergenic |
CCTGATGTAGATAAAGCGTC+CGG | 0.571937 | 6.2:+2206134 | MS.gene026971:CDS |
TATCGAAAAGCTTGCTAAGG+CGG | 0.574722 | 6.2:+2207649 | MS.gene026971:CDS |
AATAGAGAAACAAGGGGACA+AGG | 0.576206 | 6.2:+2208089 | MS.gene026971:CDS |
TCAAGTTATGGGTATTGACT+GGG | 0.576707 | 6.2:+2207675 | MS.gene026971:CDS |
ATATTCTTCTATAACACCAA+TGG | 0.576784 | 6.2:-2209408 | None:intergenic |
TACAAAGAAAACAAGTAGAA+GGG | 0.576831 | 6.2:+2210856 | MS.gene026971:CDS |
ACCATATTGTCTGACAAGAC+CGG | 0.580377 | 6.2:+2205810 | MS.gene026971:CDS |
CGCATTTGTCATAGCTGCAA+GGG | 0.580801 | 6.2:+2206193 | MS.gene026971:CDS |
ACCTGTCTGCACCCTTGCAT+AGG | 0.582339 | 6.2:-2206588 | None:intergenic |
GGAGTTGCATGTCAAAGTAC+CGG | 0.583936 | 6.2:-2205829 | None:intergenic |
TTATAGAAGAATATCAATGA+TGG | 0.584565 | 6.2:+2209417 | MS.gene026971:CDS |
ATACATTTGTGGAGACAAGA+TGG | 0.585382 | 6.2:+2204983 | MS.gene026971:CDS |
TAATCCGAGTCCAGCTGAAG+AGG | 0.588505 | 6.2:-2210410 | None:intergenic |
CCGCATTTGTCATAGCTGCA+AGG | 0.591830 | 6.2:+2206192 | MS.gene026971:CDS |
ATCGAGAAGCAAATTAATGA+GGG | 0.592066 | 6.2:+2208214 | MS.gene026971:CDS |
ATGTATCGAAAAGCTTGCTA+AGG | 0.595722 | 6.2:+2207646 | MS.gene026971:CDS |
AGAGTATAAGCAGTGGGACA+AGG | 0.596446 | 6.2:+2206993 | MS.gene026971:CDS |
GTTTGTCAAATGTTCAATAG+GGG | 0.596677 | 6.2:+2205857 | MS.gene026971:CDS |
AATCAAGCCTTCAGAAAAGA+CGG | 0.599146 | 6.2:+2210501 | MS.gene026971:CDS |
GGACAAGGAGGCTCTAATGA+AGG | 0.601203 | 6.2:+2208104 | MS.gene026971:CDS |
AAAATATTGCTCCTATGCAA+GGG | 0.601599 | 6.2:+2206577 | MS.gene026971:CDS |
TGCTAGGAGAGCAAAGGACA+GGG | 0.602114 | 6.2:+2205923 | MS.gene026971:CDS |
AAAGCTGTATAAGGTGCCAA+AGG | 0.602566 | 6.2:-2203871 | None:intergenic |
AGAAATACCGAATATATATG+TGG | 0.605220 | 6.2:+2205330 | MS.gene026971:CDS |
TATAGAGGCGAACAACAGAA+AGG | 0.606510 | 6.2:+2204939 | MS.gene026971:CDS |
GCGAAGAAGAGTATAAGCAG+TGG | 0.606726 | 6.2:+2206986 | MS.gene026971:CDS |
AATTGGTGAAGTTGGAAACC+GGG | 0.607524 | 6.2:+2208524 | MS.gene026971:CDS |
TTCAAATCATCATATAGAGA+TGG | 0.609796 | 6.2:+2203640 | MS.gene026971:CDS |
TACTATGGCTAAAGAAGCTG+TGG | 0.610973 | 6.2:+2203930 | MS.gene026971:CDS |
GGATGCAGCAGCTGACAAGA+TGG | 0.612373 | 6.2:+2207065 | MS.gene026971:CDS |
AGCAGACCGAGATGCACTTG+TGG | 0.614290 | 6.2:+2207044 | MS.gene026971:CDS |
CGAAGAAGAGTATAAGCAGT+GGG | 0.616116 | 6.2:+2206987 | MS.gene026971:CDS |
GTGGTAGATTTCGAAATACT+CGG | 0.619891 | 6.2:+2210528 | MS.gene026971:CDS |
AATCCGAGTCCAGCTGAAGA+GGG | 0.622661 | 6.2:-2210409 | None:intergenic |
AACGCATAATGAATGGACAA+TGG | 0.624312 | 6.2:+2206042 | MS.gene026971:CDS |
CCTTGCAGCTATGACAAATG+CGG | 0.624318 | 6.2:-2206192 | None:intergenic |
TCATATCAATAGAGAAACAA+GGG | 0.624609 | 6.2:+2208082 | MS.gene026971:CDS |
TTGGCTTGATAATTGATGGG+AGG | 0.626792 | 6.2:+2208296 | MS.gene026971:CDS |
GCAAAGGACAGGGAATCTGA+AGG | 0.627375 | 6.2:+2205933 | MS.gene026971:CDS |
AGAGAGTTCCAATACAGGAG+AGG | 0.635392 | 6.2:+2208261 | MS.gene026971:CDS |
GGCACTTGCTAGGAGAGCAA+AGG | 0.636441 | 6.2:+2205917 | MS.gene026971:CDS |
TTTGTCAAATGTTCAATAGG+GGG | 0.637077 | 6.2:+2205858 | MS.gene026971:CDS |
GGTTAAGAAGAAGATTAGCA+AGG | 0.641967 | 6.2:-2210463 | None:intergenic |
ATCATATCAATAGAGAAACA+AGG | 0.642078 | 6.2:+2208081 | MS.gene026971:CDS |
CTCCTTCTAGATATAGAAAG+GGG | 0.643172 | 6.2:-2210377 | None:intergenic |
GGTGATGGTGCGAATGATGT+CGG | 0.644692 | 6.2:+2208565 | MS.gene026971:CDS |
ATTATCGGCTGGATGTTGAA+CGG | 0.645393 | 6.2:+2210429 | MS.gene026971:CDS |
CTTCAGAAAAGACGGTCAAG+TGG | 0.646648 | 6.2:+2210509 | MS.gene026971:CDS |
CTTTCGTCAAGCTATGAGGA+CGG | 0.647046 | 6.2:+2205075 | MS.gene026971:CDS |
TTGGAATTAGTGGTGCTGAA+GGG | 0.650775 | 6.2:+2208614 | MS.gene026971:CDS |
TGATGTGATTAAAGTGTACA+AGG | 0.654144 | 6.2:+2205023 | MS.gene026971:CDS |
TAGGGCTATGGTCAAATGTG+AGG | 0.655790 | 6.2:+2205206 | MS.gene026971:CDS |
GTTGGAATTAGTGGTGCTGA+AGG | 0.660354 | 6.2:+2208613 | MS.gene026971:CDS |
TCATATCAAAAGATATTCCG+AGG | 0.661085 | 6.2:+2206924 | MS.gene026971:CDS |
AAAGAATGTCAGTGATAGTG+CGG | 0.661878 | 6.2:+2206542 | MS.gene026971:CDS |
GATAAAGGATATCAAAACCA+AGG | 0.665429 | 6.2:-2205469 | None:intergenic |
GTCAGTGATAGTGCGGACTG+AGG | 0.665447 | 6.2:+2206549 | MS.gene026971:CDS |
GTGGGACAAGGAGTTCTCGA+AGG | 0.666566 | 6.2:+2207005 | MS.gene026971:CDS |
TGATGTCGGTATGCTTCAGG+AGG | 0.667840 | 6.2:+2208579 | MS.gene026971:CDS |
AGAGAAACAAGGGGACAAGG+AGG | 0.681878 | 6.2:+2208092 | MS.gene026971:CDS |
CAAGTTATGGGTATTGACTG+GGG | 0.687652 | 6.2:+2207676 | MS.gene026971:CDS |
GCACCAATCACAGCCACCAA+AGG | 0.687747 | 6.2:-2203907 | None:intergenic |
AGATGGAAGAAACTTCGTGT+CGG | 0.688799 | 6.2:+2205000 | MS.gene026971:CDS |
CATATACCAATCGTTGTACG+CGG | 0.692401 | 6.2:-2209637 | None:intergenic |
CATATCAATAGAGAAACAAG+GGG | 0.692560 | 6.2:+2208083 | MS.gene026971:CDS |
AGATTGGAGAAGGAGAACTC+AGG | 0.704946 | 6.2:+2203954 | MS.gene026971:CDS |
TCTCCACTTCCGTAATACCA+CGG | 0.743567 | 6.2:-2205893 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.2 | gene | 2203583 | 2211045 | 2203583 | ID=MS.gene026971 |
chr6.2 | mRNA | 2203583 | 2211045 | 2203583 | ID=MS.gene026971.t1;Parent=MS.gene026971 |
chr6.2 | exon | 2203583 | 2203773 | 2203583 | ID=MS.gene026971.t1.exon1;Parent=MS.gene026971.t1 |
chr6.2 | CDS | 2203583 | 2203773 | 2203583 | ID=cds.MS.gene026971.t1;Parent=MS.gene026971.t1 |
chr6.2 | exon | 2203870 | 2203975 | 2203870 | ID=MS.gene026971.t1.exon2;Parent=MS.gene026971.t1 |
chr6.2 | CDS | 2203870 | 2203975 | 2203870 | ID=cds.MS.gene026971.t1;Parent=MS.gene026971.t1 |
chr6.2 | exon | 2204937 | 2206300 | 2204937 | ID=MS.gene026971.t1.exon3;Parent=MS.gene026971.t1 |
chr6.2 | CDS | 2204937 | 2206300 | 2204937 | ID=cds.MS.gene026971.t1;Parent=MS.gene026971.t1 |
chr6.2 | exon | 2206498 | 2206608 | 2206498 | ID=MS.gene026971.t1.exon4;Parent=MS.gene026971.t1 |
chr6.2 | CDS | 2206498 | 2206608 | 2206498 | ID=cds.MS.gene026971.t1;Parent=MS.gene026971.t1 |
chr6.2 | exon | 2206867 | 2207143 | 2206867 | ID=MS.gene026971.t1.exon5;Parent=MS.gene026971.t1 |
chr6.2 | CDS | 2206867 | 2207143 | 2206867 | ID=cds.MS.gene026971.t1;Parent=MS.gene026971.t1 |
chr6.2 | exon | 2207638 | 2207726 | 2207638 | ID=MS.gene026971.t1.exon6;Parent=MS.gene026971.t1 |
chr6.2 | CDS | 2207638 | 2207726 | 2207638 | ID=cds.MS.gene026971.t1;Parent=MS.gene026971.t1 |
chr6.2 | exon | 2208017 | 2208125 | 2208017 | ID=MS.gene026971.t1.exon7;Parent=MS.gene026971.t1 |
chr6.2 | CDS | 2208017 | 2208125 | 2208017 | ID=cds.MS.gene026971.t1;Parent=MS.gene026971.t1 |
chr6.2 | exon | 2208199 | 2208426 | 2208199 | ID=MS.gene026971.t1.exon8;Parent=MS.gene026971.t1 |
chr6.2 | CDS | 2208199 | 2208426 | 2208199 | ID=cds.MS.gene026971.t1;Parent=MS.gene026971.t1 |
chr6.2 | exon | 2208517 | 2208642 | 2208517 | ID=MS.gene026971.t1.exon9;Parent=MS.gene026971.t1 |
chr6.2 | CDS | 2208517 | 2208642 | 2208517 | ID=cds.MS.gene026971.t1;Parent=MS.gene026971.t1 |
chr6.2 | exon | 2209340 | 2209438 | 2209340 | ID=MS.gene026971.t1.exon10;Parent=MS.gene026971.t1 |
chr6.2 | CDS | 2209340 | 2209438 | 2209340 | ID=cds.MS.gene026971.t1;Parent=MS.gene026971.t1 |
chr6.2 | exon | 2209555 | 2209746 | 2209555 | ID=MS.gene026971.t1.exon11;Parent=MS.gene026971.t1 |
chr6.2 | CDS | 2209555 | 2209746 | 2209555 | ID=cds.MS.gene026971.t1;Parent=MS.gene026971.t1 |
chr6.2 | exon | 2210375 | 2210661 | 2210375 | ID=MS.gene026971.t1.exon12;Parent=MS.gene026971.t1 |
chr6.2 | CDS | 2210375 | 2210661 | 2210375 | ID=cds.MS.gene026971.t1;Parent=MS.gene026971.t1 |
chr6.2 | exon | 2210830 | 2210921 | 2210830 | ID=MS.gene026971.t1.exon13;Parent=MS.gene026971.t1 |
chr6.2 | CDS | 2210830 | 2210921 | 2210830 | ID=cds.MS.gene026971.t1;Parent=MS.gene026971.t1 |
chr6.2 | exon | 2211041 | 2211045 | 2211041 | ID=MS.gene026971.t1.exon14;Parent=MS.gene026971.t1 |
chr6.2 | CDS | 2211041 | 2211045 | 2211041 | ID=cds.MS.gene026971.t1;Parent=MS.gene026971.t1 |
Gene Sequence |
Protein sequence |