AlfalfaGEDB | MS.gene011235

M. sativa cultivar XinJiangDaYe / MS.gene011235

KEGG: K01530
GO: GO:0000166 GO:0000287 GO:0003674 GO:0005215 GO:0005319 GO:0005488 GO:0005524 GO:0005575 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0008144 GO:0008150 GO:0015711 GO:0015748 GO:0015914 GO:0016021 GO:0017076 GO:0030554 GO:0031224 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0046872 GO:0051179 GO:0051234 GO:0071702 GO:0097159 GO:0097367 GO:0110165 GO:0140303 GO:0140326 GO:1901265 GO:1901363
PFAM: PF00702.29 PF13246.9 PF16209.8 PF16212.8

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene011235.t1	XP_003627157.3	98.5	1226	19	0	1	1226	1	1226	0.00E+00	2395.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene011235.t1	Q9LNQ4	73.8	1223	302	4	1	1222	1	1206	0.0e+00	1808.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene011235.t1	A0A396GL04	98.5	1226	19	0	1	1226	1	1226	0.0e+00	2395.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
MS.gene003673	MS.gene011235	PPI
MS.gene011235	MS.gene053922	PPI
MS.gene011235	MS.gene056466	PPI
MS.gene011235	MS.gene052688	PPI
MS.gene011235	MS.gene23325	PPI
MS.gene011235	MS.gene055786	PPI
MS.gene011235	MS.gene057001	PPI
MS.gene011235	MS.gene67744	PPI
MS.gene011235	MS.gene77800	PPI
MS.gene011235	MS.gene31443	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene011235.t1	MTR_2g099690	83.607	1220	197	3	5	1223	6	1223	2165
MS.gene011235.t1	MTR_8g018290	98.292	878	15	0	349	1226	3	880	1793
MS.gene011235.t1	MTR_8g018290	97.514	885	15	1	349	1226	3	887	1785
MS.gene011235.t1	MTR_2g099690	83.814	902	143	3	5	905	6	905	1586
MS.gene011235.t1	MTR_2g099690	83.025	866	144	3	5	869	6	869	1511
MS.gene011235.t1	MTR_4g112430	56.522	1219	484	11	1	1205	1	1187	1386
MS.gene011235.t1	MTR_8g069920	54.597	1240	508	11	1	1215	1	1210	1375
MS.gene011235.t1	MTR_6g006910	54.184	1231	498	8	7	1215	6	1192	1352
MS.gene011235.t1	MTR_0021s0360	54.061	1219	508	8	6	1208	1	1183	1333
MS.gene011235.t1	MTR_3g037330	53.970	1184	494	7	9	1177	5	1152	1310

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene011235.t1	AT1G17500	73.835	1223	302	4	1	1222	1	1206	1904
MS.gene011235.t1	AT1G17500	73.835	1223	302	4	1	1222	1	1206	1904
MS.gene011235.t1	AT1G54280	73.191	1216	321	4	12	1222	12	1227	1884
MS.gene011235.t1	AT1G54280	73.191	1216	321	4	12	1222	12	1227	1884
MS.gene011235.t1	AT1G54280	73.191	1216	321	4	12	1222	12	1227	1884
MS.gene011235.t1	AT3G13900	73.520	1216	315	5	12	1222	12	1225	1879
MS.gene011235.t1	AT1G72700	72.268	1226	328	5	1	1222	1	1218	1869
MS.gene011235.t1	AT1G72700	72.268	1226	328	5	1	1222	1	1218	1869
MS.gene011235.t1	AT1G72700	72.268	1226	328	5	1	1222	1	1218	1869
MS.gene011235.t1	AT3G13900	74.545	935	231	5	12	941	12	944	1436

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Find 296 sgRNAs with CRISPR-Local

Find 433 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAGTTGATTCTTGTTG+GGG	0.534028	8.2:-76026227	MS.gene011235:CDS
AAAAGCTAAATCACTATCTA+GGG	0.495806	8.2:+76028171	None:intergenic
AAACTTTGAGTATGAGCGCC+AGG	0.523169	8.2:-76028086	MS.gene011235:CDS
AAAGTGTAAAGACTGGGGTT+CGG	0.469430	8.2:+76028115	None:intergenic
AAATACACCAAGTGAAATGA+CGG	0.570611	8.2:+76024016	None:intergenic
AAATGACAAAGGGAAGGATC+AGG	0.460343	8.2:-76028813	MS.gene011235:CDS
AAATGTAAGCACGTTGTATT+TGG	0.230347	8.2:+76028615	None:intergenic
AAATTTGGCCCTCCTCATCA+CGG	0.634882	8.2:+76026779	None:intergenic
AACATCTTTGAAATGATATG+TGG	0.514371	8.2:+76023444	None:intergenic
AACTTTAACATGTAATCAGA+TGG	0.548950	8.2:-76027528	MS.gene011235:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATACACCAAGTGAAATGA+CGG	+	chr8.2:76028030-76028049	None:intergenic	30.0%
AAATGTAAGCACGTTGTATT+TGG	+	chr8.2:76023431-76023450	None:intergenic	30.0%
AATGTTCACTTGCATAATCT+GGG	-	chr8.2:76028347-76028366	MS.gene011235:CDS	30.0%
AATGTTGTTGCCCAATAAAT+AGG	+	chr8.2:76028543-76028562	None:intergenic	30.0%
AATTCTATTGTTCTTGCCTA+TGG	-	chr8.2:76025323-76025342	MS.gene011235:intron	30.0%
ACCAATTACAATTCATGAGA+CGG	+	chr8.2:76024800-76024819	None:intergenic	30.0%
ACGACAACTTATTAATAGGT+TGG	+	chr8.2:76028136-76028155	None:intergenic	30.0%
AGAAGATATCAGTTAAGAAG+AGG	+	chr8.2:76027862-76027881	None:intergenic	30.0%
ATCATACTCAATGCACTAAA+AGG	+	chr8.2:76023541-76023560	None:intergenic	30.0%
ATGATACAAGAAGCAGATAT+TGG	-	chr8.2:76026936-76026955	MS.gene011235:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.2	gene	76023232	76028833	76023232	ID=MS.gene011235
chr8.2	mRNA	76023232	76028833	76023232	ID=MS.gene011235.t1;Parent=MS.gene011235
chr8.2	exon	76027011	76028833	76027011	ID=MS.gene011235.t1.exon1;Parent=MS.gene011235.t1
chr8.2	CDS	76027011	76028833	76027011	ID=cds.MS.gene011235.t1;Parent=MS.gene011235.t1
chr8.2	exon	76026754	76026864	76026754	ID=MS.gene011235.t1.exon2;Parent=MS.gene011235.t1
chr8.2	CDS	76026754	76026864	76026754	ID=cds.MS.gene011235.t1;Parent=MS.gene011235.t1
chr8.2	exon	76026195	76026471	76026195	ID=MS.gene011235.t1.exon3;Parent=MS.gene011235.t1
chr8.2	CDS	76026195	76026471	76026195	ID=cds.MS.gene011235.t1;Parent=MS.gene011235.t1
chr8.2	exon	76025999	76026087	76025999	ID=MS.gene011235.t1.exon4;Parent=MS.gene011235.t1
chr8.2	CDS	76025999	76026087	76025999	ID=cds.MS.gene011235.t1;Parent=MS.gene011235.t1
chr8.2	exon	76025783	76025867	76025783	ID=MS.gene011235.t1.exon5;Parent=MS.gene011235.t1
chr8.2	CDS	76025783	76025867	76025783	ID=cds.MS.gene011235.t1;Parent=MS.gene011235.t1
chr8.2	exon	76025479	76025688	76025479	ID=MS.gene011235.t1.exon6;Parent=MS.gene011235.t1
chr8.2	CDS	76025479	76025688	76025479	ID=cds.MS.gene011235.t1;Parent=MS.gene011235.t1
chr8.2	exon	76025076	76025201	76025076	ID=MS.gene011235.t1.exon7;Parent=MS.gene011235.t1
chr8.2	CDS	76025076	76025201	76025076	ID=cds.MS.gene011235.t1;Parent=MS.gene011235.t1
chr8.2	exon	76024359	76024457	76024359	ID=MS.gene011235.t1.exon8;Parent=MS.gene011235.t1
chr8.2	CDS	76024359	76024457	76024359	ID=cds.MS.gene011235.t1;Parent=MS.gene011235.t1
chr8.2	exon	76023983	76024174	76023983	ID=MS.gene011235.t1.exon9;Parent=MS.gene011235.t1
chr8.2	CDS	76023983	76024174	76023983	ID=cds.MS.gene011235.t1;Parent=MS.gene011235.t1
chr8.2	exon	76023232	76023900	76023232	ID=MS.gene011235.t1.exon10;Parent=MS.gene011235.t1
chr8.2	CDS	76023232	76023900	76023232	ID=cds.MS.gene011235.t1;Parent=MS.gene011235.t1

Gene Sequence

>MS.gene011235

ATGACAAAGGGAAGGATCAGGGCAAGGCTCCGAAGGAGCAATTTTTACACATTTGGTTGTCTTCGAGCTTCTGCTACTACTGAGGAGGGGCCTCATCCACTTCAAGGTCCGGGCTACTCGCGAACCGTGCACTGCAACCAGCCTCAGATCCATGAGAAGAGACCTTTCTATTATTGCAAGAATGATATTTCCACAACCAAATACAACGTGCTTACATTTTTGCCCAAAGCAATTTTTGAACAGTTTCGTAGGGTTGCTAATATATACTTTCTTTTGGCTGCGTGTCTCTCATATACTCCAATGTCACCTTTTAGTGCATTGAGTATGATCGCTCCTTTAGCATTTGTTGTCGGGCTTAGTATGGCGAAGGAAGCATTGGAAGATTCACGCAGGTTTGTTCAGGATGTGAAAGTTAATCGTCGAAAAGTTAATCACCATAAAGGTGATGGTGTTTTTGGTCACAGGTCGTGGCAGAATATTATGGTTGGCGATGTAGTAAAAGTAGAAAAGGATAAGTTTTTTCCAGCTGATTTGCTTCTCCTATCGTCAAGTTATGAAGATGGGATATGCTATGTGGAGACGATGAATTTAGATGGTGAGACCAACTTGAAGGTAAAGAGATCTTTGGAGTCTACCTTGGCCCTAGATAGTGATTTAGCTTTTAAGGATTTCACTGGAACAATAAGATGTGAAGACCCGAACCCCAGTCTTTACACTTTTGTTGGAAACTTTGAGTATGAGCGCCAGGTTTATCCTCTTGATCCTAGTCAAATTCTCCTCCGAGATTCTAAGCTCAGGAACACCGAATACATATATGGAGTGGTCATTTTCACTGGTCACGACAGCAAAGTCATGCAGAATTCCACAAGATCCCCTTCAAAAAGGAGCACAATAGAAAAGAAGATGGATTATATCATATACACTCTCTTCACTGTCCTTATATTTATATCTGTCATTAGTACCATAGCATTTATGGTCATGACTAAGTACAGAACCCCAAAGTGGTGGTACATACGCCCTGACCAAATTGACCGCCAGTATGATCCCAAGTTCCTTGGAATGGCTGGGATGAGTCATTTGATTACCGCTCTCATTCTCTATGGATATTTGATACCCATCTCACTTTATGTTTCCATCGAGGTTGTGAAGGTTTTACAGGCAACCTTCATTAACCAAGACATTCTAATGTATGATGAAGAAACCGGAACTCCAGCTGATGCACGGACTTCAAATTTGAATGAAGAGTTGGGTCAGGTGGATACAATCCTCTCTGATAAAACTGGAACTTTAACATGTAATCAGATGGACTTTTTGAAGTGCTCTATTGCGGGTACTCCATATGGTGCGTCTTCAAGTGAAGTTGAACTTGCTGCTGCAAAGCAGATAGCTTCTGATCTCGAGGACGGGGATTCAGATCTCTCCAATTTCCCCCTACGTCATAGGAAAGCTCAGGTTTCATGGGAAAACATTGATAAAGTTGATGAAATTGAACTAGAGACTGTTGTTACTTCCAAAGGTGATGAGGATCAAAAGCAGGCCATAAAGGGATTTGGTTTTGAAGACGACCGTCTCATGAATTGTAATTGGTTGCAAGAGCCCAATGTCGATGACATTTTATTATTTTTCCGAATACTAGCAGTTTGCCATACTGCCATTCCTGAGCTGAATGAGGAGACGGGTGGTTTTACATATGAAGCCGAGTCTCCAGATGAAGGGGCTTTTCTCGTAGCTGCAAGAGAATTTGGCTTTGAGTTTTGCAGGAGGACCCAGTCAAGTATTTTCACACGTGAAAGAATATCTGCTTCAGGGCAAGTGGTTGAAAGGTATGAGTTTATGAAAACTCTTATGCTCATCTATTTCTTTTGCTTTGTTTGCACTCCCAACCCCAAGCAGGCATTACAAGATATGTTTTGTCTTTATTCATGTCTATTTATATTTCTGTATAAATACTTTTGCGTGGATCATTCAGGGAGTACAAACTCTTGAATCTACTAGATTTCACAAGTAAAAGAAAGCGTATGTCAGTGATTGTCCGTGATGAGGAGGGCCAAATTTTTCTTCTGTGCAAAGGGGCAGACAGGTTAGCTTACAAATTCTATTGTTCTTGCCTATGGTACTCATTTTTTACTGCTGAGCGTATAATGTCGATCATCAATAGGACCTTCTCAAATAATACATTAGAATAAATGAAATTGAAATTAAATTTGATCTGCACAACGTACAGCAAATTTACAACATAATCACAAAAATCCCCTGCTTCCATAGAAGAATCTTGCAAAAACACACGTATTACTCTCATAAAGAGGCTTTCAATATCTCTCTTAGAATTTGACATCCATTCTTTTCTTGCTCGGTTTTTCAGTATCATATTTGATCGTTTGTCCAAGAACGGAAAAGCGTATTTGGAGGCTACTACCAAGCATTTAAATGATTATGGAGAAACAGGTTTAAGAACACTAGCTCTGTCCTATAGAAGGCTTGAAGAAAAAGAGTACTCAGATTGGAACAATGAGTTTCAGAAAGCCAAAGCAGCCGTTGGGGCTGATAGAGAGGCAATGCTTGAGCGGGTCTCAGATATTATGGAAAAAGAGTTGATTCTTGTTGGGGCTACTGCTATAGAAGACAAACTGCAGAAAGGGGTAGGATTTGTTATTCTTTCTAATCAACACACACACGCACATATTGCTGTCGTTGTTGTTTTCCTACTTCAAATCTTCAACCAAATTCAATGCTTTATTCTTCTCAGGTTCCCGAGTGCATTGATAAACTTGCTCAAGCTGGTCTCAAGATTTGGGTATTGACGGGGGATAAGATGGAAACTGCAATCAACATTGGGTCAGTCAACCACAAACTATCTAGCCTCGTATACTATTTCATTTATGTTCTAAACATATAAGGTTGAACTTACAGAAAAGTGCTTCCGTAACAAAGTATGTTGAAATGAAATTGTATTTTCTGTGGTGCAGCTTTTCCTGTAGTTTGCTTCGACAGGGAATGAAGCAGATCTGTATAACTACGAATTCAGACTCAGTATCCAATGATACCAAACAGGTACTCTTTTTCATTGAGAAAGCGTATCAGAGTTAACTTTACAGGCTCGTGTTTTATCTGACGTTGGGCCTAGTTCTTTTGCTTAACACCGCAGGCCATTAAGGACAACATATTAAATCAAATTACCAATGCTACACAAATGATAAAGCTGGAGAAGGATCCTCATGCAGCATTTGCATTAATTATTGATGGGAAAACTCTGACATATGCTTTAGAAGATGACGTGAAGCACCAATTTTTGGGACTGGCAGTTGATTGTGCTTCTGTCATCTGCTGTCGCGTGTCTCCCAAGCAAAAGGCACTGGTAGGAGATTTTTTTTTCCGTTTTCTGTTGTGATTTTGTGGACTCTCATATACTGTATAAGAGTAGTTGATTATTGGAGTTATATGTATGCATGATTGCTCACATGGATCCACCGTAGTTAAATAGGAAAACTTAGGTCCATTTAAAATCAACTTGTATGTCACTCATTGCCACACTTATATAAATTGCATATATCTAACTCTATCTCTATGCCAACTCTGAGATATAAAGTAATATGCATTTTACAATGTCCTGATTTCTTAATCTTCTGGGCCAGGTCGTAAGGTTGGTAAAACAAGGAACTGGGAAGACCACTCTTGCAATAGGTGATGGTGCAAATGATGTTGGCATGATACAAGAAGCAGATATTGGTGTTGGAATCAGCGGGGTTGAAGGTATGCAGGTCAGTGGCATACATGACTGTCTCTTTAAGAAAAACTGTCTCACAAATATCACTTCTTATGACAAGTTAATTCTAGCCTTTAATTTTGCAAGTTGGAATGCCATACATGTTATTTTTCAGATACAAAATAAAATTTTAGTCTTATATGGTCTTATTATTTTAAAAAATAATACCGTGATTAGAGAAAGAAAACCTGTCATGTATCTTTTTTCATGTTTGGACTCACTTTCAAGCTGGACTGTGCACCAGATGGACGTCTTGTCAAGCCTTTTCTCATAGTTGTCTTGTGATTAGAGCTTCTGAACTGATGCAAGAGGAAAGTGAACTTCCTCTTTGCATTATCAATAATATGCAGACTGATTTATTCTATAAAACGAGGGAAAAAATCTAACTTGCTTAAAATGAAACTTATTTAGAAAATTAGCATTTTGGTATTTTCTTAATTCTTTTTGTCATTATAGTCTGAAAATAGTTATATCTGAATTTTGATCAGAATGAATTGCTAAATTTTATTGTAGTGTGGAAAATGATGTGCAAATTTTCTGACGTTACGTAATTGTGATGTATTCCTTAATTGTCCTTTTAAGTTGTGGTCTCAAGCATGCAATTTCCTTTCAGGCAGTGATGGCTAGCGACTTCTCGATTGCCCAATTTCGATTTTTGGAGCGGCTTCTGGTGGTCCATGGACACTGGTGTTACAAGAGAATTGCACAGATGGTAATTGATTAATGATTGTCTTGATCGTCATTCTCACAAACTGGATGACTTGCATTCAATGCCTTGCGTGTTGTGTATCCTTTGCATGGATAGAGAAGCACTTAATATTTCTAGCATGTTGTATCTGTTTATTATGAATCAAATCCTTCATTCCTCTTCTTAACTGATATCTTCTGCCTTGCAGATTTGTTATTTCTTTTACAAGAATATAGCATTTGGCCTCACCATCTTTTACTTTGAGGCCTATACAGGCTTCTCCGGCCAATCGGTTTATGATGACTGGTACATGATATTGTTCAACGTTTGTTTGACATCATTACCCGTCATTTCACTTGGTGTATTTGAACAAGATGTTTCGTCGGAAGTTTGTTTACAGGTTTGTTCTCTTGCAATGTCTTCTACATATTTCGTCCCTGTGTGAAAAATCCAACCTATTAATAAGTTGTCGTGTTTTGCAGTTTCCAGCACTTTACCAACAAGGACCCAAAAATCTGTTCTTTGATTGGTATAGAATATTAGGATGGATGGCCAATGGTCTATATTCTTCCGTCGTCATCTTCTTCGGCACCGTCGCCATATTCTACGAGCAAGCATTCCGTGTTGATGGTCAGACATCTGACTTGGCTGCTCTTGGAACCACAATGTTCACTTGCATAATCTGGGCAGTCAACTGTCAAATTTCACTGACAATGAGCCATTTTACATGGATTCAACATCTGTTTATATGGGGTAGCATAGTTACTTGGTACCTCTTTCTCATGATGTATGGCGCACTTTCTCCCAACCTTTCTCACAGTGCCTACCATTTACTGATTGAGGCTCTCGGACCTGCGCCTATTTATTGGGCAACAACATTATTAGCTACCGTTGCATGCATTCTTCCTTATCTTATCCACATATCATTTCAAAGATGTTTTAGTCCCATGGATCACCACATTATCCAAGAAATCAAGCACTACAAGAAAGATATTGAGGATCAATCCATGTGGGTGAGGGAGAGTTCTAAAGCAAGACAAGAAACCAAGATTGGGTTCACTGCAAGAGTGGAAGCAAAGATCAGACAATTGAAGGGAAAGCTGCAGAAAAAACAATCTTTCTTGACTATTTTGTCCCCAGTACGTACATAA

Protein sequence

>MS.gene011235.t1

MTKGRIRARLRRSNFYTFGCLRASATTEEGPHPLQGPGYSRTVHCNQPQIHEKRPFYYCKNDISTTKYNVLTFLPKAIFEQFRRVANIYFLLAACLSYTPMSPFSALSMIAPLAFVVGLSMAKEALEDSRRFVQDVKVNRRKVNHHKGDGVFGHRSWQNIMVGDVVKVEKDKFFPADLLLLSSSYEDGICYVETMNLDGETNLKVKRSLESTLALDSDLAFKDFTGTIRCEDPNPSLYTFVGNFEYERQVYPLDPSQILLRDSKLRNTEYIYGVVIFTGHDSKVMQNSTRSPSKRSTIEKKMDYIIYTLFTVLIFISVISTIAFMVMTKYRTPKWWYIRPDQIDRQYDPKFLGMAGMSHLITALILYGYLIPISLYVSIEVVKVLQATFINQDILMYDEETGTPADARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKCSIAGTPYGASSSEVELAAAKQIASDLEDGDSDLSNFPLRHRKAQVSWENIDKVDEIELETVVTSKGDEDQKQAIKGFGFEDDRLMNCNWLQEPNVDDILLFFRILAVCHTAIPELNEETGGFTYEAESPDEGAFLVAAREFGFEFCRRTQSSIFTRERISASGQVVEREYKLLNLLDFTSKRKRMSVIVRDEEGQIFLLCKGADSIIFDRLSKNGKAYLEATTKHLNDYGETGLRTLALSYRRLEEKEYSDWNNEFQKAKAAVGADREAMLERVSDIMEKELILVGATAIEDKLQKGVPECIDKLAQAGLKIWVLTGDKMETAINIGFSCSLLRQGMKQICITTNSDSVSNDTKQAIKDNILNQITNATQMIKLEKDPHAAFALIIDGKTLTYALEDDVKHQFLGLAVDCASVICCRVSPKQKALVVRLVKQGTGKTTLAIGDGANDVGMIQEADIGVGISGVEGMQAVMASDFSIAQFRFLERLLVVHGHWCYKRIAQMICYFFYKNIAFGLTIFYFEAYTGFSGQSVYDDWYMILFNVCLTSLPVISLGVFEQDVSSEVCLQFPALYQQGPKNLFFDWYRILGWMANGLYSSVVIFFGTVAIFYEQAFRVDGQTSDLAALGTTMFTCIIWAVNCQISLTMSHFTWIQHLFIWGSIVTWYLFLMMYGALSPNLSHSAYHLLIEALGPAPIYWATTLLATVACILPYLIHISFQRCFSPMDHHIIQEIKHYKKDIEDQSMWVRESSKARQETKIGFTARVEAKIRQLKGKLQKKQSFLTILSPVRT