AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene027548

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene027548.t1 MTR_5g035580 86.266 466 13 1 1 415 1 466 0.0 805
MS.gene027548.t1 MTR_5g035560 82.969 458 27 1 9 415 7 464 0.0 766
MS.gene027548.t1 MTR_6g038200 42.013 457 211 2 3 405 1 457 1.75e-128 378
MS.gene027548.t1 MTR_6g038230 42.544 456 208 2 3 404 1 456 2.67e-128 378
MS.gene027548.t1 MTR_6g038220 42.544 456 209 2 3 405 1 456 8.64e-124 366
MS.gene027548.t1 MTR_6g038240 39.865 444 213 2 13 402 11 454 2.65e-117 350
MS.gene027548.t1 MTR_6g038300 39.910 446 213 2 13 403 11 456 1.14e-111 335
MS.gene027548.t1 MTR_7g080940 38.976 449 220 4 10 405 8 455 2.28e-109 329
MS.gene027548.t1 MTR_7g080935 39.294 453 221 4 9 408 7 458 8.32e-109 328
MS.gene027548.t1 MTR_8g088560 39.602 452 213 6 10 402 7 457 1.84e-107 325
MS.gene027548.t1 MTR_7g080950 37.444 446 225 4 10 402 3 447 3.23e-103 314
MS.gene027548.t1 MTR_7g080900 37.054 448 224 8 11 402 10 455 1.97e-94 291
MS.gene027548.t1 MTR_8g083290 34.490 461 224 16 14 400 5 461 1.26e-74 240
MS.gene027548.t1 MTR_8g083280 31.924 473 231 16 14 408 8 467 6.62e-65 215
MS.gene027548.t1 MTR_1g107380 30.769 468 246 9 12 405 12 475 1.99e-64 214
MS.gene027548.t1 MTR_1g107350 31.478 467 239 11 12 402 7 468 9.87e-64 212
MS.gene027548.t1 MTR_3g049970 31.568 472 236 13 12 404 8 471 1.37e-63 212
MS.gene027548.t1 MTR_3g084530 32.353 476 233 15 10 402 3 472 9.39e-60 201
MS.gene027548.t1 MTR_1g107315 32.059 471 237 12 11 404 6 470 2.48e-59 201
MS.gene027548.t1 MTR_1g107375 29.322 457 249 8 11 402 6 453 1.66e-58 198
MS.gene027548.t1 MTR_1g032490 32.196 469 235 13 11 402 8 470 1.08e-56 194
MS.gene027548.t1 MTR_1g107365 28.889 450 259 8 12 402 44 491 2.45e-56 193
MS.gene027548.t1 MTR_1g107360 30.197 457 250 11 12 402 8 461 2.69e-56 192
MS.gene027548.t1 MTR_1g107285 28.033 478 266 10 8 413 3 474 5.88e-54 186
MS.gene027548.t1 MTR_3g084520 34.985 343 199 10 10 334 3 339 1.00e-53 186
MS.gene027548.t1 MTR_3g084520 44.578 83 45 1 327 408 396 478 3.66e-16 80.5
MS.gene027548.t1 MTR_7g080960 41.475 217 123 3 11 223 10 226 1.61e-51 180
MS.gene027548.t1 MTR_7g080960 36.548 197 84 4 228 402 293 470 3.83e-27 113
MS.gene027548.t1 MTR_4g095008 34.393 346 183 14 11 333 9 333 1.58e-48 173
MS.gene027548.t1 MTR_3g084540 33.432 338 202 10 10 327 3 337 2.47e-46 166
MS.gene027548.t1 MTR_3g084540 48.718 78 38 2 327 402 396 473 1.53e-15 78.6
MS.gene027548.t1 MTR_8g064880 33.758 314 188 8 12 308 8 318 6.22e-45 162
MS.gene027548.t1 MTR_0036s0220 28.008 482 240 16 13 402 12 478 7.34e-45 162
MS.gene027548.t1 MTR_5g016480 27.673 477 260 13 12 409 7 477 2.05e-44 161
MS.gene027548.t1 MTR_5g464810 27.349 479 246 13 10 399 9 474 2.17e-44 161
MS.gene027548.t1 MTR_5g064240 27.349 479 246 13 10 399 9 474 2.17e-44 161
MS.gene027548.t1 MTR_4g094920 34.402 343 187 13 11 333 24 348 2.50e-44 161
MS.gene027548.t1 MTR_3g479520 26.458 480 261 12 5 399 7 479 5.09e-44 160
MS.gene027548.t1 MTR_3g479490 25.257 487 264 11 9 406 2 477 3.56e-43 157
MS.gene027548.t1 MTR_8g064870 32.907 313 188 8 12 308 10 316 8.49e-42 154
MS.gene027548.t1 MTR_3g079480 25.979 485 259 12 13 408 21 494 5.30e-41 152
MS.gene027548.t1 MTR_5g464760 25.309 486 255 14 10 402 9 479 7.66e-41 151
MS.gene027548.t1 MTR_6g014186 27.477 444 250 15 13 399 7 435 2.00e-40 149
MS.gene027548.t1 MTR_2g008210 25.577 477 257 15 13 402 11 476 2.35e-38 144
MS.gene027548.t1 MTR_3g008010 30.240 334 192 9 9 308 6 332 2.61e-38 144
MS.gene027548.t1 MTR_6g013440 25.873 487 255 14 9 402 7 480 4.69e-38 144
MS.gene027548.t1 MTR_7g013180 26.293 464 244 16 11 400 3 442 1.15e-35 136
MS.gene027548.t1 MTR_6g014040 29.254 335 189 11 13 308 10 335 1.39e-35 137
MS.gene027548.t1 MTR_6g014290 28.144 334 199 8 9 308 6 332 4.70e-35 135
MS.gene027548.t1 MTR_6g014220 28.060 335 198 8 9 308 6 332 1.62e-34 134
MS.gene027548.t1 MTR_5g072830 26.752 471 244 17 9 404 6 450 3.17e-34 132
MS.gene027548.t1 MTR_6g014250 28.144 334 199 9 9 308 6 332 3.30e-34 133
MS.gene027548.t1 MTR_7g011470 30.189 318 193 10 13 308 10 320 9.75e-34 131
MS.gene027548.t1 MTR_4g094220 28.358 335 192 8 13 308 7 332 1.32e-33 131
MS.gene027548.t1 MTR_7g013260 25.330 454 250 14 13 399 6 437 2.99e-33 130
MS.gene027548.t1 MTR_5g072810 25.474 475 256 15 5 404 4 455 3.07e-33 130
MS.gene027548.t1 MTR_7g011470 29.618 314 196 8 13 308 10 316 4.49e-33 129
MS.gene027548.t1 MTR_7g013200 26.362 459 241 15 13 400 5 437 1.32e-32 128
MS.gene027548.t1 MTR_3g479470 26.050 476 259 15 1 391 1 468 4.70e-32 127
MS.gene027548.t1 MTR_7g013240 25.495 455 247 14 13 399 6 436 4.89e-32 126
MS.gene027548.t1 MTR_7g055710 28.402 338 201 11 3 312 1 325 4.88e-31 124
MS.gene027548.t1 MTR_6g014270 28.190 337 191 12 13 308 7 333 6.21e-31 124
MS.gene027548.t1 MTR_0288s0020 27.027 333 187 9 9 308 6 315 2.01e-30 122
MS.gene027548.t1 MTR_6g014200 28.955 335 189 12 13 308 7 331 2.68e-30 122
MS.gene027548.t1 MTR_6g014310 27.893 337 190 10 13 308 11 335 2.93e-30 122
MS.gene027548.t1 MTR_6g014187 27.711 332 197 14 13 308 10 334 3.43e-30 122
MS.gene027548.t1 MTR_3g031450 26.696 457 251 17 13 405 18 454 4.07e-30 121
MS.gene027548.t1 MTR_6g013960 27.108 332 199 11 13 308 10 334 4.38e-30 121
MS.gene027548.t1 MTR_5g087620 28.804 368 207 14 13 335 10 367 5.10e-30 121
MS.gene027548.t1 MTR_8g059425 26.807 332 198 9 13 308 10 332 5.69e-30 121
MS.gene027548.t1 MTR_3g031400 25.934 455 255 16 13 405 18 452 6.44e-30 120
MS.gene027548.t1 MTR_7g013220 25.106 470 244 14 13 400 5 448 8.67e-30 120
MS.gene027548.t1 MTR_6g013680 28.760 379 214 16 58 399 12 371 2.14e-29 118
MS.gene027548.t1 MTR_6g014150 29.552 335 187 13 13 308 7 331 2.45e-29 119
MS.gene027548.t1 MTR_1g019510 25.793 473 249 13 11 398 4 459 6.42e-29 118
MS.gene027548.t1 MTR_5g072820 27.987 318 180 10 12 306 9 300 7.54e-29 117
MS.gene027548.t1 MTR_6g011340 27.795 331 198 11 13 308 10 334 7.55e-29 118
MS.gene027548.t1 MTR_5g072860 25.738 474 252 17 13 407 18 470 9.47e-29 117
MS.gene027548.t1 MTR_7g070610 27.072 362 227 10 1 335 1 352 1.14e-28 117
MS.gene027548.t1 MTR_6g013450 28.313 332 196 13 13 308 10 335 1.29e-28 117
MS.gene027548.t1 MTR_7g070660 28.841 371 212 13 3 349 1 343 1.31e-28 117
MS.gene027548.t1 MTR_6g013900 28.571 329 197 12 13 308 10 333 2.17e-28 116
MS.gene027548.t1 MTR_5g072840 26.923 312 201 7 9 308 6 302 4.28e-28 115
MS.gene027548.t1 MTR_3g069690 25.217 460 258 13 12 402 7 449 5.02e-28 115
MS.gene027548.t1 MTR_4g064987 26.709 468 245 18 14 406 9 453 5.16e-28 115
MS.gene027548.t1 MTR_6g013990 27.356 329 200 12 13 308 10 332 5.88e-28 115
MS.gene027548.t1 MTR_8g012745 24.532 481 258 12 13 404 6 470 1.38e-27 114
MS.gene027548.t1 MTR_4g064987 26.030 461 251 16 14 406 9 447 1.82e-27 113
MS.gene027548.t1 MTR_6g014050 27.545 334 195 10 13 308 11 335 1.95e-27 114
MS.gene027548.t1 MTR_6g013920 29.091 330 194 13 13 308 10 333 2.23e-27 114
MS.gene027548.t1 MTR_8g012635 24.638 483 262 11 11 404 4 473 2.63e-27 113
MS.gene027548.t1 MTR_6g014170 28.173 323 197 11 9 308 6 316 3.06e-27 113
MS.gene027548.t1 MTR_6g014020 27.381 336 193 11 13 308 10 334 4.78e-27 112
MS.gene027548.t1 MTR_5g075440 25.745 470 241 18 12 399 9 452 7.70e-27 112
MS.gene027548.t1 MTR_7g047030 24.638 483 249 14 13 402 6 466 1.38e-26 111
MS.gene027548.t1 MTR_7g047270 24.638 483 249 14 13 402 6 466 1.38e-26 111
MS.gene027548.t1 MTR_4g485630 28.000 350 203 15 7 324 3 335 1.80e-26 111
MS.gene027548.t1 MTR_7g070860 26.069 491 243 22 3 402 1 462 5.15e-26 110
MS.gene027548.t1 MTR_5g031860 25.470 479 255 16 13 406 12 473 9.64e-26 108
MS.gene027548.t1 MTR_7g070740 25.496 353 220 11 3 326 1 339 1.02e-25 109
MS.gene027548.t1 MTR_6g013435 29.658 263 162 7 150 399 51 303 1.06e-25 106
MS.gene027548.t1 MTR_5g031840 30.211 331 179 16 13 308 5 318 1.56e-25 108
MS.gene027548.t1 MTR_8g012650 24.116 481 263 10 13 404 6 473 3.17e-25 107
MS.gene027548.t1 MTR_3g069710 23.605 466 272 11 4 402 3 451 3.57e-25 107
MS.gene027548.t1 MTR_5g031830 25.620 484 249 20 13 406 12 474 4.10e-25 107
MS.gene027548.t1 MTR_7g070930 26.496 351 218 12 4 326 5 343 9.38e-25 106
MS.gene027548.t1 MTR_0078s0010 24.025 487 259 13 13 408 6 472 9.81e-25 106
MS.gene027548.t1 MTR_6g023665 23.361 488 237 14 14 398 14 467 1.09e-24 105
MS.gene027548.t1 MTR_7g070800 28.739 341 193 17 10 319 3 324 2.49e-24 105
MS.gene027548.t1 MTR_0184s0040 27.473 364 210 12 12 349 20 355 2.92e-24 104
MS.gene027548.t1 MTR_0078s0190 27.473 364 210 12 12 349 20 355 2.92e-24 104
MS.gene027548.t1 MTR_8g009067 24.740 481 247 13 11 399 4 461 3.56e-24 104
MS.gene027548.t1 MTR_6g014300 26.023 342 186 12 7 308 6 320 5.44e-24 103
MS.gene027548.t1 MTR_7g071040 25.691 362 233 12 2 336 6 358 7.16e-24 103
MS.gene027548.t1 MTR_8g008970 23.285 481 264 12 11 404 4 466 1.28e-23 103
MS.gene027548.t1 MTR_4g128720 22.894 463 268 11 12 404 14 457 1.53e-23 102
MS.gene027548.t1 MTR_8g009050 27.701 361 203 16 11 338 4 339 1.89e-23 102
MS.gene027548.t1 MTR_8g077590 24.948 485 252 14 13 407 9 471 2.46e-23 102
MS.gene027548.t1 MTR_5g016660 28.291 357 203 13 15 335 12 351 3.05e-23 102
MS.gene027548.t1 MTR_6g033625 24.101 473 252 16 16 398 5 460 3.56e-23 101
MS.gene027548.t1 MTR_5g058320 27.607 326 190 13 13 308 10 319 4.27e-23 101
MS.gene027548.t1 MTR_0078s0060 23.218 491 249 15 11 402 4 465 4.37e-23 101
MS.gene027548.t1 MTR_1g107340 28.980 245 156 5 8 236 3 245 4.58e-23 97.8
MS.gene027548.t1 MTR_4g108250 27.174 368 219 15 3 335 1 354 5.28e-23 101
MS.gene027548.t1 MTR_7g070780 25.197 508 257 18 3 407 1 488 5.58e-23 101
MS.gene027548.t1 MTR_3g479610 25.484 310 164 7 148 399 9 309 6.12e-23 99.0
MS.gene027548.t1 MTR_8g066610 26.879 346 219 14 9 326 5 344 6.88e-23 100
MS.gene027548.t1 MTR_6g488280 23.327 493 235 15 10 396 3 458 9.01e-23 100
MS.gene027548.t1 MTR_0428s0010 23.327 493 235 15 10 396 3 458 9.01e-23 100
MS.gene027548.t1 MTR_7g117405 26.807 332 208 9 2 309 1 321 1.19e-22 100
MS.gene027548.t1 MTR_6g033615 27.614 373 171 12 96 396 99 444 3.41e-22 98.6
MS.gene027548.t1 MTR_6g033725 26.866 335 164 11 134 400 138 459 3.44e-22 98.6
MS.gene027548.t1 MTR_5g090660 27.429 350 214 14 14 338 6 340 4.23e-22 99.0
MS.gene027548.t1 MTR_0009s0240 24.736 473 260 14 9 402 3 458 4.25e-22 98.2
MS.gene027548.t1 MTR_0891s0010 25.170 294 157 6 173 408 7 295 4.71e-22 95.9
MS.gene027548.t1 MTR_7g071050 27.066 351 175 14 1 326 1 295 5.06e-22 97.8
MS.gene027548.t1 MTR_4g128690 22.863 468 269 11 7 404 9 454 5.44e-22 97.8
MS.gene027548.t1 MTR_8g009055 28.532 361 200 15 11 338 4 339 5.73e-22 98.2
MS.gene027548.t1 MTR_8g465670 26.686 341 196 12 14 327 8 321 6.00e-22 98.2
MS.gene027548.t1 MTR_6g014240 27.795 331 170 16 12 308 6 301 6.46e-22 97.8
MS.gene027548.t1 MTR_5g090620 26.888 331 193 11 14 318 6 313 8.36e-22 97.4
MS.gene027548.t1 MTR_6g033675 26.393 341 159 12 134 400 140 462 1.39e-21 97.1
MS.gene027548.t1 MTR_0078s0200 26.899 316 197 10 12 308 5 305 1.54e-21 94.7
MS.gene027548.t1 MTR_5g090630 27.356 329 187 11 13 318 5 304 1.56e-21 96.7
MS.gene027548.t1 MTR_0184s0030 26.899 316 197 10 12 308 5 305 1.68e-21 96.7
MS.gene027548.t1 MTR_5g090700 25.496 353 212 12 14 338 6 335 2.08e-21 96.3
MS.gene027548.t1 MTR_8g006220 27.385 325 176 13 14 308 7 301 2.50e-21 96.3
MS.gene027548.t1 MTR_5g098960 26.074 326 214 9 14 323 8 322 2.63e-21 95.9
MS.gene027548.t1 MTR_8g009063 26.686 341 186 12 1 308 1 310 4.17e-21 95.5
MS.gene027548.t1 MTR_7g070910 24.571 350 228 11 3 326 1 340 4.28e-21 95.5
MS.gene027548.t1 MTR_5g045970 24.444 495 263 21 10 405 13 495 7.11e-21 95.1
MS.gene027548.t1 MTR_3g009510 27.642 369 214 13 14 351 6 352 8.24e-21 94.7
MS.gene027548.t1 MTR_8g008990 26.667 360 210 12 11 338 4 341 9.15e-21 94.4
MS.gene027548.t1 MTR_8g008990 42.667 75 43 0 324 398 390 464 2.09e-11 65.9
MS.gene027548.t1 MTR_8g071070 24.230 487 255 18 9 402 3 468 1.70e-20 93.6
MS.gene027548.t1 MTR_6g033660 26.765 340 157 12 134 400 141 461 3.07e-20 92.8
MS.gene027548.t1 MTR_5g040030 26.810 373 225 14 1 347 1 351 4.02e-20 92.8
MS.gene027548.t1 MTR_8g074550 27.322 366 193 16 13 333 8 345 5.31e-20 92.4
MS.gene027548.t1 MTR_7g117170 27.864 323 179 12 14 308 16 312 1.15e-19 91.3
MS.gene027548.t1 MTR_7g102450 25.926 324 208 12 1 309 1 307 1.25e-19 91.3
MS.gene027548.t1 MTR_5g098930 25.220 341 183 11 12 318 4 306 1.28e-19 90.9
MS.gene027548.t1 MTR_2g098430 23.887 494 260 17 14 407 7 484 1.33e-19 91.3
MS.gene027548.t1 MTR_1g029540 25.788 349 199 13 7 324 8 327 2.45e-19 90.1
MS.gene027548.t1 MTR_7g070810 26.184 359 202 15 1 326 1 329 3.64e-19 89.7
MS.gene027548.t1 MTR_7g070940 24.716 352 215 11 1 326 1 328 6.20e-19 89.0
MS.gene027548.t1 MTR_5g004940 33.696 184 82 5 259 402 194 377 7.78e-19 88.2
MS.gene027548.t1 MTR_5g004940 27.273 176 107 4 13 171 17 188 3.11e-16 80.5
MS.gene027548.t1 MTR_8g083300 37.037 135 76 4 14 141 8 140 1.46e-18 82.8
MS.gene027548.t1 MTR_8g006260 28.391 317 187 11 13 306 6 305 1.63e-18 87.8
MS.gene027548.t1 MTR_5g045960 24.615 325 205 13 11 307 7 319 1.99e-18 87.4
MS.gene027548.t1 MTR_8g006270 27.181 298 182 7 19 309 32 301 2.07e-18 87.4
MS.gene027548.t1 MTR_8g006230 30.252 238 135 8 102 327 46 264 2.37e-18 85.1
MS.gene027548.t1 MTR_5g090580 25.688 327 202 9 14 318 6 313 3.23e-18 86.7
MS.gene027548.t1 MTR_7g102550 24.395 496 252 22 9 399 5 482 4.22e-18 86.7
MS.gene027548.t1 MTR_8g027885 25.994 327 174 11 14 308 19 309 6.43e-18 85.9
MS.gene027548.t1 MTR_0536s0020 25.672 335 203 11 14 321 19 334 7.23e-18 85.9
MS.gene027548.t1 MTR_2g008225 25.575 348 223 11 2 326 4 338 7.49e-18 85.9
MS.gene027548.t1 MTR_8g009073 26.074 326 187 11 11 308 4 303 8.50e-18 85.5
MS.gene027548.t1 MTR_6g005600 26.364 330 177 12 13 308 6 303 1.08e-17 85.1
MS.gene027548.t1 MTR_7g070870 24.928 349 198 13 12 326 18 336 1.27e-17 85.1
MS.gene027548.t1 MTR_5g072850 25.587 426 221 19 13 399 10 378 1.66e-17 84.0
MS.gene027548.t1 MTR_6g035295 26.126 333 196 11 11 310 10 325 2.10e-17 84.3
MS.gene027548.t1 MTR_7g046490 25.309 324 185 9 13 308 6 300 3.54e-17 83.6
MS.gene027548.t1 MTR_4g117960 25.672 335 205 13 17 321 15 335 3.94e-17 83.6
MS.gene027548.t1 MTR_4g082810 26.415 371 211 12 12 352 6 344 5.59e-17 82.8
MS.gene027548.t1 MTR_5g090600 25.291 344 210 10 14 338 6 321 8.56e-17 82.4
MS.gene027548.t1 MTR_5g090670 24.062 320 204 9 14 309 6 310 1.03e-16 82.4
MS.gene027548.t1 MTR_5g039900 23.615 343 211 11 1 310 1 325 1.05e-16 82.4
MS.gene027548.t1 MTR_2g008220 24.638 345 228 10 3 326 4 337 1.07e-16 82.0
MS.gene027548.t1 MTR_4g008630 23.955 359 213 11 7 338 8 333 1.09e-16 82.0
MS.gene027548.t1 MTR_6g042310 24.725 364 204 14 2 326 4 336 1.11e-16 82.0
MS.gene027548.t1 MTR_4g485590 26.048 334 199 14 13 326 9 314 2.34e-16 80.9
MS.gene027548.t1 MTR_4g485640 24.406 463 246 15 23 399 219 663 2.45e-16 81.6
MS.gene027548.t1 MTR_7g470610 29.032 217 124 8 117 326 3 196 2.95e-16 79.3
MS.gene027548.t1 MTR_7g070583 29.032 217 124 8 117 326 3 196 2.95e-16 79.3
MS.gene027548.t1 MTR_6g035185 23.724 333 216 10 17 321 15 337 3.34e-16 80.9
MS.gene027548.t1 MTR_4g024020 26.036 338 196 14 12 312 8 328 3.71e-16 80.5
MS.gene027548.t1 MTR_5g067170 23.432 303 214 6 17 307 15 311 5.58e-16 80.1
MS.gene027548.t1 MTR_4g117980 25.723 346 193 12 17 321 15 337 5.66e-16 80.1
MS.gene027548.t1 MTR_3g479620 31.429 140 84 2 13 140 6 145 6.05e-16 75.9
MS.gene027548.t1 MTR_2g046750 23.867 331 200 12 14 315 6 313 6.32e-16 79.7
MS.gene027548.t1 MTR_4g117890 25.501 349 214 10 14 335 14 343 8.57e-16 79.3
MS.gene027548.t1 MTR_4g082820 27.151 372 205 13 12 352 6 342 1.02e-15 79.3
MS.gene027548.t1 MTR_6g052375 29.583 240 131 9 148 366 15 237 1.17e-15 77.8
MS.gene027548.t1 MTR_2g034990 23.871 310 206 8 17 307 15 313 1.61e-15 78.6
MS.gene027548.t1 MTR_6g036650 27.042 355 204 16 8 326 8 343 1.68e-15 78.6
MS.gene027548.t1 MTR_2g008226 26.361 349 212 14 9 325 6 341 1.75e-15 78.6
MS.gene027548.t1 MTR_8g044140 28.750 240 146 11 111 335 87 316 2.66e-15 77.8
MS.gene027548.t1 MTR_8g027870 26.480 321 180 11 14 308 19 309 3.27e-15 77.8
MS.gene027548.t1 MTR_5g027210 24.850 334 195 13 14 308 5 321 3.28e-15 77.8
MS.gene027548.t1 MTR_7g102560 24.638 345 222 14 12 329 8 341 7.16e-15 76.6
MS.gene027548.t1 MTR_5g070040 24.633 341 201 12 14 319 12 331 1.07e-14 75.9
MS.gene027548.t1 MTR_8g006730 25.234 321 201 10 9 308 2 304 1.15e-14 75.9
MS.gene027548.t1 MTR_2g059240 22.998 487 273 16 1 403 1 469 1.24e-14 75.9
MS.gene027548.t1 MTR_6g078320 21.922 333 205 10 13 308 11 325 2.02e-14 75.1
MS.gene027548.t1 MTR_1g040310 24.148 352 225 13 12 335 14 351 2.19e-14 75.1
MS.gene027548.t1 MTR_7g102460 25.150 334 202 15 12 312 8 326 2.38e-14 75.1
MS.gene027548.t1 MTR_4g117950 25.806 341 192 14 17 331 10 315 2.54e-14 75.1
MS.gene027548.t1 MTR_6g014190 31.884 138 89 4 173 308 7 141 3.51e-14 73.2
MS.gene027548.t1 MTR_4g485620 26.667 315 201 13 27 318 3 310 3.89e-14 74.3
MS.gene027548.t1 MTR_6g035265 25.301 332 207 12 17 331 15 322 5.25e-14 73.9
MS.gene027548.t1 MTR_4g077960 25.000 332 196 13 23 325 2 309 6.47e-14 73.6
MS.gene027548.t1 MTR_8g466240 26.000 350 210 15 13 335 8 335 7.36e-14 73.6
MS.gene027548.t1 MTR_8g006710 24.074 324 200 11 9 308 2 303 1.08e-13 72.8
MS.gene027548.t1 MTR_4g031800 26.420 352 209 16 14 335 10 341 1.12e-13 72.8
MS.gene027548.t1 MTR_8g090095 23.056 360 202 13 18 335 30 356 1.21e-13 72.8
MS.gene027548.t1 MTR_0199s0010 24.082 245 148 7 9 221 6 244 2.03e-13 70.5
MS.gene027548.t1 MTR_8g032950 23.743 358 216 15 14 335 13 349 4.69e-13 70.9
MS.gene027548.t1 MTR_2g040530 23.512 336 204 11 14 319 6 318 5.59e-13 70.9
MS.gene027548.t1 MTR_4g118000 24.189 339 208 12 17 336 16 324 5.64e-13 70.9
MS.gene027548.t1 MTR_8g009067 29.648 199 114 7 120 308 3 185 7.83e-13 69.7
MS.gene027548.t1 MTR_8g068340 23.615 343 221 11 12 326 11 340 1.50e-12 69.3
MS.gene027548.t1 MTR_0536s0010 26.331 357 199 18 3 324 11 338 1.58e-12 69.3
MS.gene027548.t1 MTR_5g019580 23.313 326 209 9 9 309 3 312 3.81e-12 68.2
MS.gene027548.t1 MTR_8g009073 31.169 154 84 6 161 308 37 174 4.16e-12 67.4
MS.gene027548.t1 MTR_5g090690 23.673 245 138 7 73 309 35 238 5.83e-12 67.4
MS.gene027548.t1 MTR_7g012120 25.566 309 199 12 17 307 20 315 5.99e-12 67.8
MS.gene027548.t1 MTR_5g090610 22.857 315 200 10 13 309 5 294 1.52e-11 66.2
MS.gene027548.t1 MTR_6g014160 25.301 249 137 11 85 308 76 300 1.77e-11 65.9
MS.gene027548.t1 MTR_8g007585 26.623 154 98 4 9 149 6 157 2.79e-11 65.1
MS.gene027548.t1 MTR_2g046820 24.581 358 211 13 14 339 6 336 4.00e-11 65.1
MS.gene027548.t1 MTR_5g029800 23.708 329 217 11 17 321 15 333 5.72e-11 64.7
MS.gene027548.t1 MTR_7g102520 24.234 359 228 12 10 335 9 356 7.71e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene027548.t1 AT1G24100 44.248 452 186 7 13 402 11 458 4.92e-126 372
MS.gene027548.t1 AT2G43820 42.094 449 192 8 13 402 7 446 3.57e-117 349
MS.gene027548.t1 AT2G43840 42.572 451 187 10 13 402 7 446 2.87e-114 342
MS.gene027548.t1 AT2G43840 42.350 451 188 10 13 402 7 446 2.95e-113 339
MS.gene027548.t1 AT1G05675 39.286 448 207 5 13 399 6 449 3.18e-101 308
MS.gene027548.t1 AT1G05680 38.753 449 208 5 13 399 6 449 9.86e-100 305
MS.gene027548.t1 AT2G31750 38.000 450 210 7 13 399 8 451 4.18e-94 290
MS.gene027548.t1 AT2G31750 37.500 456 216 7 13 405 8 457 1.36e-93 290
MS.gene027548.t1 AT2G31790 36.947 452 222 6 13 403 8 457 7.74e-92 285
MS.gene027548.t1 AT4G15490 28.367 490 246 12 9 411 4 475 4.70e-59 200
MS.gene027548.t1 AT3G21560 28.078 463 258 9 13 402 12 472 1.96e-58 199
MS.gene027548.t1 AT4G15480 28.696 345 216 7 1 322 7 344 1.64e-49 175
MS.gene027548.t1 AT2G23260 28.698 453 253 12 13 403 10 454 1.62e-46 166
MS.gene027548.t1 AT4G15500 31.746 315 196 8 13 313 9 318 5.26e-46 165
MS.gene027548.t1 AT1G22380 27.673 477 249 16 13 402 13 480 2.23e-45 164
MS.gene027548.t1 AT2G23250 27.928 444 248 13 22 405 7 438 3.22e-45 162
MS.gene027548.t1 AT1G22400 26.427 473 255 12 13 399 13 478 1.45e-42 156
MS.gene027548.t1 AT2G36970 24.738 477 260 12 13 404 10 472 1.33e-41 154
MS.gene027548.t1 AT2G28080 25.053 471 263 11 17 410 22 479 2.58e-41 152
MS.gene027548.t1 AT1G05530 32.588 313 177 9 13 309 5 299 1.24e-40 150
MS.gene027548.t1 AT1G05530 52.632 76 35 1 327 402 380 454 5.20e-16 80.1
MS.gene027548.t1 AT1G05560 32.448 339 201 10 13 339 5 327 6.45e-40 149
MS.gene027548.t1 AT1G05560 46.429 84 44 1 327 410 377 459 6.67e-15 76.6
MS.gene027548.t1 AT1G22370 30.625 320 195 9 13 308 13 329 9.61e-40 148
MS.gene027548.t1 AT1G05560 32.448 339 201 10 13 339 55 377 1.06e-39 149
MS.gene027548.t1 AT1G05560 46.429 84 44 1 327 410 427 509 5.86e-15 77.0
MS.gene027548.t1 AT1G78270 25.773 485 260 13 13 408 13 486 8.75e-39 145
MS.gene027548.t1 AT4G14090 26.205 477 251 14 1 400 1 453 2.02e-38 144
MS.gene027548.t1 AT1G22360 25.217 460 266 15 13 400 10 463 3.00e-38 144
MS.gene027548.t1 AT2G30140 28.178 472 239 17 9 406 9 454 1.26e-37 142
MS.gene027548.t1 AT1G22340 27.864 323 205 7 13 308 13 334 2.04e-37 142
MS.gene027548.t1 AT2G30140 28.118 473 239 17 9 406 9 455 2.99e-37 141
MS.gene027548.t1 AT1G22360 28.354 328 197 8 13 308 10 331 3.47e-37 141
MS.gene027548.t1 AT4G15550 27.731 357 204 11 13 339 13 345 1.36e-34 134
MS.gene027548.t1 AT3G02100 26.797 459 251 16 13 400 13 457 1.82e-33 130
MS.gene027548.t1 AT2G15480 25.255 491 262 16 5 402 2 480 4.50e-32 127
MS.gene027548.t1 AT2G30150 26.144 459 253 16 13 403 13 453 9.60e-32 125
MS.gene027548.t1 AT2G15490 25.051 491 251 14 11 402 5 477 2.68e-31 125
MS.gene027548.t1 AT2G15480 25.349 501 259 18 5 402 2 490 1.47e-30 123
MS.gene027548.t1 AT2G15490 24.494 494 253 13 11 402 5 480 2.38e-30 122
MS.gene027548.t1 AT2G30150 25.934 455 251 16 17 403 1 437 5.60e-30 120
MS.gene027548.t1 AT1G01420 26.667 480 251 15 3 397 1 464 7.76e-30 120
MS.gene027548.t1 AT1G01420 26.850 473 245 15 10 397 5 461 1.40e-29 120
MS.gene027548.t1 AT5G17050 23.932 468 259 12 13 404 12 458 7.68e-28 115
MS.gene027548.t1 AT4G01070 28.863 343 189 10 13 327 8 323 2.44e-27 112
MS.gene027548.t1 AT1G10400 24.211 475 262 18 12 404 6 464 4.17e-27 113
MS.gene027548.t1 AT5G05870 24.947 469 261 13 9 403 4 455 5.41e-27 112
MS.gene027548.t1 AT4G01070 28.863 343 189 10 13 327 8 323 6.72e-27 112
MS.gene027548.t1 AT5G59590 23.779 471 247 16 13 402 10 449 1.08e-25 108
MS.gene027548.t1 AT5G17040 24.123 456 263 11 11 402 3 439 3.27e-25 107
MS.gene027548.t1 AT1G73880 25.971 489 253 19 2 404 3 468 7.71e-25 106
MS.gene027548.t1 AT4G34131 24.297 498 261 22 5 404 2 481 1.11e-24 106
MS.gene027548.t1 AT3G46650 28.105 306 180 8 13 308 10 285 1.40e-24 105
MS.gene027548.t1 AT2G36760 25.862 348 214 10 12 326 13 349 1.66e-24 105
MS.gene027548.t1 AT3G46670 28.617 311 189 10 13 308 9 301 3.04e-24 104
MS.gene027548.t1 AT4G34135 24.225 355 226 12 5 326 3 347 8.64e-24 103
MS.gene027548.t1 AT2G36780 26.257 358 216 14 4 326 5 349 1.04e-23 103
MS.gene027548.t1 AT5G59580 24.628 471 254 19 13 408 9 453 1.41e-23 102
MS.gene027548.t1 AT1G01390 26.611 357 200 9 10 326 22 356 1.81e-23 102
MS.gene027548.t1 AT1G01390 26.611 357 200 9 10 326 5 339 1.85e-23 102
MS.gene027548.t1 AT5G03490 25.970 335 208 11 13 326 19 334 3.82e-23 101
MS.gene027548.t1 AT3G46660 28.797 316 182 11 14 308 15 308 4.35e-23 101
MS.gene027548.t1 AT1G30530 23.632 457 266 13 13 403 12 451 6.93e-23 100
MS.gene027548.t1 AT5G38010 27.500 320 186 8 13 308 10 307 1.27e-22 99.8
MS.gene027548.t1 AT5G05880 23.158 475 258 17 9 404 4 450 9.73e-22 97.4
MS.gene027548.t1 AT2G36770 24.090 357 225 12 4 326 5 349 1.46e-21 97.1
MS.gene027548.t1 AT3G46690 26.452 310 198 8 13 308 9 302 6.30e-21 94.7
MS.gene027548.t1 AT2G36750 27.143 350 206 14 12 326 9 344 7.94e-21 94.7
MS.gene027548.t1 AT5G05860 22.484 467 271 15 6 402 2 447 1.34e-20 94.0
MS.gene027548.t1 AT3G16520 28.511 235 139 9 108 326 113 334 1.42e-20 93.6
MS.gene027548.t1 AT3G16520 28.511 235 139 9 108 326 113 334 1.54e-20 94.0
MS.gene027548.t1 AT3G16520 28.511 235 139 9 108 326 113 334 1.62e-20 93.6
MS.gene027548.t1 AT5G49690 27.193 342 199 14 12 326 9 327 2.90e-20 92.8
MS.gene027548.t1 AT2G23210 27.437 277 177 11 13 277 10 274 3.16e-20 90.5
MS.gene027548.t1 AT3G46700 23.291 468 249 18 13 402 9 444 4.13e-20 92.4
MS.gene027548.t1 AT4G34138 22.200 491 266 18 10 403 8 479 5.55e-20 92.4
MS.gene027548.t1 AT5G05900 26.332 319 201 12 9 308 4 307 6.75e-20 91.7
MS.gene027548.t1 AT3G46720 25.658 456 247 18 14 402 10 440 7.09e-20 91.7
MS.gene027548.t1 AT3G46680 25.566 309 202 8 13 308 9 302 1.06e-19 91.3
MS.gene027548.t1 AT5G17030 22.930 471 267 15 9 404 8 457 1.32e-19 90.9
MS.gene027548.t1 AT1G22370 32.653 147 96 3 164 308 14 159 2.65e-19 88.2
MS.gene027548.t1 AT2G36800 23.889 360 227 12 2 326 1 348 7.25e-19 89.0
MS.gene027548.t1 AT5G26310 28.173 323 198 13 13 319 7 311 2.09e-18 87.4
MS.gene027548.t1 AT1G51210 25.904 332 207 13 13 326 20 330 2.29e-18 87.0
MS.gene027548.t1 AT5G53990 21.535 469 262 15 10 404 3 439 5.49e-18 85.9
MS.gene027548.t1 AT5G38040 29.022 317 165 15 21 308 18 303 5.59e-18 85.9
MS.gene027548.t1 AT5G65550 27.841 352 204 16 12 332 8 340 7.43e-18 85.9
MS.gene027548.t1 AT3G21800 23.743 358 214 9 10 326 2 341 9.06e-18 85.5
MS.gene027548.t1 AT2G26480 25.000 320 186 11 13 308 8 297 1.02e-17 85.1
MS.gene027548.t1 AT5G12890 24.129 373 214 12 10 335 7 357 7.46e-17 82.8
MS.gene027548.t1 AT3G11340 19.647 453 282 12 14 402 10 444 1.19e-16 82.0
MS.gene027548.t1 AT3G55710 24.145 468 254 17 14 402 9 454 2.15e-16 81.3
MS.gene027548.t1 AT3G53160 25.562 356 211 16 9 326 4 343 3.97e-16 80.5
MS.gene027548.t1 AT5G66690 25.305 328 201 11 13 319 7 311 4.90e-16 80.1
MS.gene027548.t1 AT3G53150 25.526 333 204 14 11 312 20 339 7.09e-16 79.7
MS.gene027548.t1 AT3G21780 23.028 317 212 8 12 310 3 305 1.04e-15 79.3
MS.gene027548.t1 AT5G05890 21.322 469 278 14 9 404 4 454 1.17e-15 79.0
MS.gene027548.t1 AT3G21790 22.817 355 215 12 14 325 5 343 3.01e-15 77.8
MS.gene027548.t1 AT2G36790 25.419 358 225 14 1 326 1 348 3.18e-15 77.8
MS.gene027548.t1 AT2G29710 25.146 342 218 13 11 326 3 332 3.50e-15 77.4
MS.gene027548.t1 AT3G50740 25.526 333 199 11 13 319 7 316 1.44e-14 75.9
MS.gene027548.t1 AT2G29730 24.340 341 218 13 10 323 2 329 2.88e-14 74.7
MS.gene027548.t1 AT1G64910 21.776 473 258 18 9 404 2 439 3.65e-14 74.3
MS.gene027548.t1 AT5G17040 23.208 293 157 5 164 402 59 337 6.86e-14 72.8
MS.gene027548.t1 AT5G54010 22.353 340 218 10 9 326 2 317 6.92e-14 73.6
MS.gene027548.t1 AT3G21760 22.973 370 218 12 12 338 3 348 7.14e-14 73.6
MS.gene027548.t1 AT5G37950 26.724 232 133 6 92 308 70 279 8.60e-14 72.8
MS.gene027548.t1 AT2G29740 24.022 358 210 10 9 323 4 342 1.05e-13 73.2
MS.gene027548.t1 AT2G29750 24.444 360 212 14 9 326 4 345 1.06e-13 73.2
MS.gene027548.t1 AT3G55700 21.909 461 271 16 13 402 8 450 1.67e-13 72.4
MS.gene027548.t1 AT1G64920 23.304 339 210 13 9 326 2 311 1.96e-13 72.0
MS.gene027548.t1 AT5G37950 28.017 232 124 9 92 308 70 273 2.59e-13 71.2
MS.gene027548.t1 AT3G21750 22.409 357 233 10 12 347 3 336 3.07e-13 71.6
MS.gene027548.t1 AT3G29630 22.293 471 261 17 13 406 6 448 1.64e-12 69.3
MS.gene027548.t1 AT4G36770 25.836 329 181 12 12 308 3 300 4.60e-12 67.8
MS.gene027548.t1 AT2G15490 25.275 182 111 4 11 168 5 185 5.40e-12 66.2
MS.gene027548.t1 AT3G29630 22.581 465 241 15 13 406 6 422 1.31e-11 66.2
MS.gene027548.t1 AT4G09500 21.687 332 216 10 13 326 6 311 2.19e-11 65.9

Find 82 sgRNAs with CRISPR-Local

Find 118 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGTGTCCTTGTGCTGGATA+TGG 0.240050 5.1:+26215101 None:intergenic
AAGGGTATGGAGCAAATTTA+TGG 0.263548 5.1:-26214239 MS.gene027548:CDS
TGAGTGAAGATTGCATTAAT+TGG 0.270840 5.1:-26214209 MS.gene027548:CDS
TGAAAGTTACCCTGCTTATA+TGG 0.273177 5.1:-26214607 MS.gene027548:CDS
AAAGTGAAGTGAATTTCTTA+TGG 0.295838 5.1:-26214086 MS.gene027548:CDS
GTTCCTTCTGCTTACTTAGA+TGG 0.303927 5.1:-26214279 MS.gene027548:CDS
AATACATTTGAAGCTTTAGA+AGG 0.325832 5.1:-26214531 MS.gene027548:CDS
GAACATTGTTGTTGTAGTTT+TGG 0.330597 5.1:+26215138 None:intergenic
ATATAAGCAGGGTAACTTTC+AGG 0.345186 5.1:+26214609 None:intergenic
CAAATTTAAATCAAGCTGAT+TGG 0.345604 5.1:-26214563 MS.gene027548:CDS
GAGAAAGAGTTCAACATTGT+TGG 0.352328 5.1:+26214926 None:intergenic
AATGAGGTTTGAGAGTGTTT+TGG 0.357948 5.1:+26214881 None:intergenic
AAGTGAAGTGAATTTCTTAT+GGG 0.361840 5.1:-26214085 MS.gene027548:CDS
GCTAAACAACATGGGATATA+TGG 0.368764 5.1:-26214783 MS.gene027548:CDS
AAAGAAGTGAAGTGATTAGA+AGG 0.376196 5.1:-26213732 MS.gene027548:CDS
AGAATTTATGTTGAGTTTGA+AGG 0.376290 5.1:-26213770 MS.gene027548:CDS
ATAGAATCTTTGTACCCCTT+TGG 0.387662 5.1:+26214033 None:intergenic
TTAGAGGAAATTTGGGAAGT+TGG 0.388475 5.1:-26213835 MS.gene027548:CDS
TCTGATGGGTTCGACGAATC+CGG 0.389070 5.1:-26214960 MS.gene027548:CDS
GCAAATAGAAGAGCTGGCTT+TGG 0.394825 5.1:-26214118 MS.gene027548:CDS
CAAATAGAAGAGCTGGCTTT+GGG 0.397560 5.1:-26214117 MS.gene027548:CDS
CAAAGATTCTATCAAAGAAA+AGG 0.398161 5.1:-26214022 MS.gene027548:CDS
ATCAAAGGCAATTCATCAAC+AGG 0.418143 5.1:+26214687 None:intergenic
TAAGAATATTAATGAGTTTG+TGG 0.419812 5.1:-26213650 MS.gene027548:CDS
TCAGTGGTGTACATCTCATT+TGG 0.424701 5.1:-26214165 MS.gene027548:CDS
ATGTTTCCTGCTAAATTGAT+TGG 0.435113 5.1:-26214309 MS.gene027548:CDS
TGCTAAATTGATTGGTCCAA+TGG 0.436681 5.1:-26214301 MS.gene027548:CDS
CTCACTTCATTCAAAACCAA+TGG 0.450750 5.1:-26214906 MS.gene027548:CDS
ATTGGTTCGACAGAGATGTT+TGG 0.459900 5.1:+26214984 None:intergenic
TTTGACTAACACAAATAAGA+TGG 0.461412 5.1:-26213623 MS.gene027548:CDS
TTAATGCAATCTTCACTCAA+TGG 0.462648 5.1:+26214213 None:intergenic
TGTGTCCTTGTGCTGGATAT+GGG 0.463765 5.1:+26215102 None:intergenic
ATCTGAGCAAATAGAAGAGC+TGG 0.471976 5.1:-26214124 MS.gene027548:CDS
TTTGTATTATAGGTTGTGAA+AGG 0.472117 5.1:-26214342 MS.gene027548:intron
TCAGGAAATCTTATAAAACT+TGG 0.478491 5.1:+26214627 None:intergenic
AACTTCATAGCCATATAAGC+AGG 0.478952 5.1:+26214597 None:intergenic
TCGTCGAACCCATCAGAGAT+TGG 0.480355 5.1:+26214966 None:intergenic
ATTGGACCAATCAATTTAGC+AGG 0.490090 5.1:+26214303 None:intergenic
GGACTAATGTGTCCTTGTGC+TGG 0.492266 5.1:+26215095 None:intergenic
GCTAGGGATGCTGTTTCTGA+AGG 0.493618 5.1:-26213685 MS.gene027548:CDS
TCATACACAATGCAAGTGAT+TGG 0.499867 5.1:+26214834 None:intergenic
AGGCCAAAAGAGGATGAAAA+TGG 0.504839 5.1:-26213808 MS.gene027548:CDS
AAAGATTCTATCAAAGAAAA+GGG 0.505195 5.1:-26214021 MS.gene027548:intron
GTACATCTCATTTGGAAGCA+TGG 0.509576 5.1:-26214157 MS.gene027548:CDS
ATCAAAGGAGACAAAGGGTA+TGG 0.516111 5.1:-26214252 MS.gene027548:CDS
TTAGAAGGAATGCTAGTGAA+TGG 0.522513 5.1:-26213717 MS.gene027548:CDS
GAATTGCCTTTGATTGTACC+TGG 0.526634 5.1:-26214678 MS.gene027548:CDS
TTGTATTATAGGTTGTGAAA+GGG 0.528055 5.1:-26214341 MS.gene027548:intron
TCTGTCGAACCAATCTCTGA+TGG 0.530114 5.1:-26214975 MS.gene027548:CDS
GTGAATGGAAGAAGTTGGCT+AGG 0.530432 5.1:-26213702 MS.gene027548:CDS
GAGCAAGGAAAATTACCAAA+GGG 0.530734 5.1:-26214048 MS.gene027548:CDS
GGAAGATCTCTAGAATTCAA+TGG 0.531119 5.1:+26214648 None:intergenic
CTTGATGTTGCTAAACAACA+TGG 0.541379 5.1:-26214792 MS.gene027548:CDS
TGCTAGTGAATGGAAGAAGT+TGG 0.547570 5.1:-26213707 MS.gene027548:CDS
TACTTAGATGGAAGAATCAA+AGG 0.552258 5.1:-26214267 MS.gene027548:CDS
GGAAGAATCAAAGGAGACAA+AGG 0.555117 5.1:-26214258 MS.gene027548:CDS
AAGTAAGCAGAAGGAACCAT+TGG 0.560336 5.1:+26214285 None:intergenic
GAAGAATCAAAGGAGACAAA+GGG 0.563073 5.1:-26214257 MS.gene027548:CDS
GGAAGACCAGGTACAATCAA+AGG 0.565814 5.1:+26214672 None:intergenic
GTTGAGTTTGAAGGTTGTGA+TGG 0.568417 5.1:-26213761 MS.gene027548:CDS
CTGTCGAACCAATCTCTGAT+GGG 0.568980 5.1:-26214974 MS.gene027548:CDS
AGTTTGAAGGTTGTGATGGA+AGG 0.569295 5.1:-26213757 MS.gene027548:CDS
TTGACTAACACAAATAAGAT+GGG 0.572178 5.1:-26213622 MS.gene027548:CDS
AGTTGGTGTGAGGCCAAAAG+AGG 0.574075 5.1:-26213818 MS.gene027548:CDS
GAATTCAATGGAGGAAGACC+AGG 0.574734 5.1:+26214660 None:intergenic
ATTTGAAGCTTTAGAAGGAG+AGG 0.576940 5.1:-26214526 MS.gene027548:intron
CTTCCATCTAAGTAAGCAGA+AGG 0.580606 5.1:+26214276 None:intergenic
GTAATGGGTTGTTGCAAATG+TGG 0.584893 5.1:+26215028 None:intergenic
AGGGATGCTGTTTCTGAAGG+AGG 0.610192 5.1:-26213682 MS.gene027548:CDS
TGCAAAGCCATCACAATCAG+TGG 0.611111 5.1:-26214181 MS.gene027548:CDS
TGAATGGAAGAAGTTGGCTA+GGG 0.620033 5.1:-26213701 MS.gene027548:CDS
ACTTCATAGCCATATAAGCA+GGG 0.620841 5.1:+26214598 None:intergenic
AGAGCAAGGAAAATTACCAA+AGG 0.640751 5.1:-26214049 MS.gene027548:CDS
TTAGCAACATCAAGTGCCCA+AGG 0.641911 5.1:+26214801 None:intergenic
AAATTTGGGAAGTTGGTGTG+AGG 0.651908 5.1:-26213828 MS.gene027548:CDS
AAGATGGGAAATGATTTGAG+TGG 0.669554 5.1:-26213607 MS.gene027548:CDS
TTGATGTTGCTAAACAACAT+GGG 0.671981 5.1:-26214791 MS.gene027548:CDS
GTGATCCCATATCCAGCACA+AGG 0.680747 5.1:-26215107 MS.gene027548:CDS
TTCGACAGAGATGTTTGGTG+CGG 0.690908 5.1:+26214989 None:intergenic
AGATCTCTAGAATTCAATGG+AGG 0.691278 5.1:+26214651 None:intergenic
AGCAAGGAAAATTACCAAAG+GGG 0.693527 5.1:-26214047 MS.gene027548:CDS
ATGTACACCACTGATTGTGA+TGG 0.698550 5.1:+26214174 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAATAAAATATTTGATATT+TGG - chr5.1:26214287-26214306 MS.gene027548:CDS 10.0%
!!! CAATTTTCTTTTTGTATTAT+AGG - chr5.1:26214400-26214419 MS.gene027548:intron 15.0%
!! AAAATTCATAAGAGAAAGAT+TGG + chr5.1:26214356-26214375 None:intergenic 20.0%
!! AAAGATTCTATCAAAGAAAA+GGG - chr5.1:26214731-26214750 MS.gene027548:CDS 20.0%
!! TAAGAATATTAATGAGTTTG+TGG - chr5.1:26215102-26215121 MS.gene027548:CDS 20.0%
!! TCGATAAAGATTAATGTATT+TGG + chr5.1:26214333-26214352 None:intergenic 20.0%
!!! AAACTAATCTTTTTGAGAAT+TGG + chr5.1:26213689-26213708 None:intergenic 20.0%
!!! AAAGTTTTTAGAGGAAATTT+GGG - chr5.1:26214910-26214929 MS.gene027548:CDS 20.0%
!!! CTTTCTCTTATGAATTTTAA+CGG - chr5.1:26214358-26214377 MS.gene027548:intron 20.0%
!!! TCAAAAAGATTAGTTTCAAA+AGG - chr5.1:26213693-26213712 MS.gene027548:CDS 20.0%
! AAAGTGAAGTGAATTTCTTA+TGG - chr5.1:26214666-26214685 MS.gene027548:CDS 25.0%
! AAGTGAAGTGAATTTCTTAT+GGG - chr5.1:26214667-26214686 MS.gene027548:CDS 25.0%
! AGAATTTATGTTGAGTTTGA+AGG - chr5.1:26214982-26215001 MS.gene027548:CDS 25.0%
! CAAAGATTCTATCAAAGAAA+AGG - chr5.1:26214730-26214749 MS.gene027548:CDS 25.0%
! CAAATTTAAATCAAGCTGAT+TGG - chr5.1:26214189-26214208 MS.gene027548:CDS 25.0%
! TCAGGAAATCTTATAAAACT+TGG + chr5.1:26214128-26214147 None:intergenic 25.0%
! TTGACTAACACAAATAAGAT+GGG - chr5.1:26215130-26215149 MS.gene027548:CDS 25.0%
! TTGTATTATAGGTTGTGAAA+GGG - chr5.1:26214411-26214430 MS.gene027548:intron 25.0%
! TTTGACTAACACAAATAAGA+TGG - chr5.1:26215129-26215148 MS.gene027548:CDS 25.0%
! TTTGTATTATAGGTTGTGAA+AGG - chr5.1:26214410-26214429 MS.gene027548:intron 25.0%
!! AAAAGGGTATAATTGTAACA+TGG - chr5.1:26214747-26214766 MS.gene027548:CDS 25.0%
!! GATAGATTTTACAGTGTAAT+GGG + chr5.1:26213742-26213761 None:intergenic 25.0%
!! TGATAGATTTTACAGTGTAA+TGG + chr5.1:26213743-26213762 None:intergenic 25.0%
!! TGATATTTGGTTGATGTATT+TGG - chr5.1:26214300-26214319 MS.gene027548:CDS 25.0%
!!! AATACATTTGAAGCTTTAGA+AGG - chr5.1:26214221-26214240 MS.gene027548:CDS 25.0%
!!! ATTTTTTGTCGTATACATCA+TGG - chr5.1:26214029-26214048 MS.gene027548:CDS 25.0%
!!! CAAAGTTTTTAGAGGAAATT+TGG - chr5.1:26214909-26214928 MS.gene027548:CDS 25.0%
!!! TTTTTTGGTGTTTTTGAATG+AGG + chr5.1:26213890-26213909 None:intergenic 25.0%
AAAGAAGTGAAGTGATTAGA+AGG - chr5.1:26215020-26215039 MS.gene027548:CDS 30.0%
ATGTTTCCTGCTAAATTGAT+TGG - chr5.1:26214443-26214462 MS.gene027548:intron 30.0%
GTGTAACCAACTAGAATTAT+TGG - chr5.1:26214769-26214788 MS.gene027548:CDS 30.0%
TACTTAGATGGAAGAATCAA+AGG - chr5.1:26214485-26214504 MS.gene027548:intron 30.0%
TGAGTGAAGATTGCATTAAT+TGG - chr5.1:26214543-26214562 MS.gene027548:CDS 30.0%
TTAATGCAATCTTCACTCAA+TGG + chr5.1:26214542-26214561 None:intergenic 30.0%
TTGATGTTGCTAAACAACAT+GGG - chr5.1:26213961-26213980 MS.gene027548:intron 30.0%
! GTATGATTCTTTTCTACCTT+GGG - chr5.1:26213935-26213954 MS.gene027548:intron 30.0%
! TGTATGATTCTTTTCTACCT+TGG - chr5.1:26213934-26213953 MS.gene027548:intron 30.0%
!! CTTTTTGAGAATTGGATTAG+TGG + chr5.1:26213681-26213700 None:intergenic 30.0%
!! GAACATTGTTGTTGTAGTTT+TGG + chr5.1:26213617-26213636 None:intergenic 30.0%
!!! TGATTGGTGTTGAAGTTTTT+TGG + chr5.1:26213905-26213924 None:intergenic 30.0%
AACTTCATAGCCATATAAGC+AGG + chr5.1:26214158-26214177 None:intergenic 35.0%
AAGATGGGAAATGATTTGAG+TGG - chr5.1:26215145-26215164 MS.gene027548:CDS 35.0%
ACTTCATAGCCATATAAGCA+GGG + chr5.1:26214157-26214176 None:intergenic 35.0%
AGAGCAAGGAAAATTACCAA+AGG - chr5.1:26214703-26214722 MS.gene027548:CDS 35.0%
AGCAAGGAAAATTACCAAAG+GGG - chr5.1:26214705-26214724 MS.gene027548:CDS 35.0%
ATAGAATCTTTGTACCCCTT+TGG + chr5.1:26214722-26214741 None:intergenic 35.0%
ATATAAGCAGGGTAACTTTC+AGG + chr5.1:26214146-26214165 None:intergenic 35.0%
ATCAAAGGCAATTCATCAAC+AGG + chr5.1:26214068-26214087 None:intergenic 35.0%
ATTGGACCAATCAATTTAGC+AGG + chr5.1:26214452-26214471 None:intergenic 35.0%
CATGTGCCAATAATTCTAGT+TGG + chr5.1:26214778-26214797 None:intergenic 35.0%
CTCACTTCATTCAAAACCAA+TGG - chr5.1:26213846-26213865 MS.gene027548:CDS 35.0%
CTTGATGTTGCTAAACAACA+TGG - chr5.1:26213960-26213979 MS.gene027548:intron 35.0%
GAAGAATCAAAGGAGACAAA+GGG - chr5.1:26214495-26214514 MS.gene027548:intron 35.0%
GAGAAAGAGTTCAACATTGT+TGG + chr5.1:26213829-26213848 None:intergenic 35.0%
GAGCAAGGAAAATTACCAAA+GGG - chr5.1:26214704-26214723 MS.gene027548:CDS 35.0%
GCTAAACAACATGGGATATA+TGG - chr5.1:26213969-26213988 MS.gene027548:intron 35.0%
TCATACACAATGCAAGTGAT+TGG + chr5.1:26213921-26213940 None:intergenic 35.0%
TGAAAGTTACCCTGCTTATA+TGG - chr5.1:26214145-26214164 MS.gene027548:CDS 35.0%
TTAGAAGGAATGCTAGTGAA+TGG - chr5.1:26215035-26215054 MS.gene027548:CDS 35.0%
TTAGAGGAAATTTGGGAAGT+TGG - chr5.1:26214917-26214936 MS.gene027548:CDS 35.0%
! AAGGGTATGGAGCAAATTTA+TGG - chr5.1:26214513-26214532 MS.gene027548:intron 35.0%
! ACACCATTTTCATCCTCTTT+TGG + chr5.1:26214950-26214969 None:intergenic 35.0%
! TCCTCTAAAAACTTTGCATC+TGG + chr5.1:26214905-26214924 None:intergenic 35.0%
! TGCTAAATTGATTGGTCCAA+TGG - chr5.1:26214451-26214470 MS.gene027548:intron 35.0%
!! AGATCTCTAGAATTCAATGG+AGG + chr5.1:26214104-26214123 None:intergenic 35.0%
!! ATTGTTGGCTTGTGAAAAAC+CGG + chr5.1:26213814-26213833 None:intergenic 35.0%
!! ATTTGAAGCTTTAGAAGGAG+AGG - chr5.1:26214226-26214245 MS.gene027548:CDS 35.0%
!! GGAAGATCTCTAGAATTCAA+TGG + chr5.1:26214107-26214126 None:intergenic 35.0%
!!! AATGAGGTTTGAGAGTGTTT+TGG + chr5.1:26213874-26213893 None:intergenic 35.0%
AAGTAAGCAGAAGGAACCAT+TGG + chr5.1:26214470-26214489 None:intergenic 40.0%
ACACTTGAGAGTCTAAGTCT+TGG - chr5.1:26214839-26214858 MS.gene027548:CDS 40.0%
AGGCCAAAAGAGGATGAAAA+TGG - chr5.1:26214944-26214963 MS.gene027548:CDS 40.0%
ATCAAAGGAGACAAAGGGTA+TGG - chr5.1:26214500-26214519 MS.gene027548:intron 40.0%
ATCTGAGCAAATAGAAGAGC+TGG - chr5.1:26214628-26214647 MS.gene027548:CDS 40.0%
CTTCCATCTAAGTAAGCAGA+AGG + chr5.1:26214479-26214498 None:intergenic 40.0%
GAATTGCCTTTGATTGTACC+TGG - chr5.1:26214074-26214093 MS.gene027548:CDS 40.0%
GGAAGAATCAAAGGAGACAA+AGG - chr5.1:26214494-26214513 MS.gene027548:intron 40.0%
GTACATCTCATTTGGAAGCA+TGG - chr5.1:26214595-26214614 MS.gene027548:CDS 40.0%
GTTCCTTCTGCTTACTTAGA+TGG - chr5.1:26214473-26214492 MS.gene027548:intron 40.0%
GTTGAGTTTGAAGGTTGTGA+TGG - chr5.1:26214991-26215010 MS.gene027548:CDS 40.0%
TCAGTGGTGTACATCTCATT+TGG - chr5.1:26214587-26214606 MS.gene027548:CDS 40.0%
TGAATGGAAGAAGTTGGCTA+GGG - chr5.1:26215051-26215070 MS.gene027548:CDS 40.0%
TGCTAGTGAATGGAAGAAGT+TGG - chr5.1:26215045-26215064 MS.gene027548:CDS 40.0%
TTATTGGCACATGATGCTGT+TGG - chr5.1:26214785-26214804 MS.gene027548:CDS 40.0%
! AGTTTGAAGGTTGTGATGGA+AGG - chr5.1:26214995-26215014 MS.gene027548:CDS 40.0%
! ATGTACACCACTGATTGTGA+TGG + chr5.1:26214581-26214600 None:intergenic 40.0%
! GGATGTTTTGTGACACATTG+TGG - chr5.1:26214806-26214825 MS.gene027548:CDS 40.0%
! GTTTTGTGACACATTGTGGT+TGG - chr5.1:26214810-26214829 MS.gene027548:CDS 40.0%
!! AAATTTGGGAAGTTGGTGTG+AGG - chr5.1:26214924-26214943 MS.gene027548:CDS 40.0%
!! ATTGGTTCGACAGAGATGTT+TGG + chr5.1:26213771-26213790 None:intergenic 40.0%
!! CAAATAGAAGAGCTGGCTTT+GGG - chr5.1:26214635-26214654 MS.gene027548:CDS 40.0%
!! GCCAGATGCAAAGTTTTTAG+AGG - chr5.1:26214901-26214920 MS.gene027548:CDS 40.0%
!! GTAATGGGTTGTTGCAAATG+TGG + chr5.1:26213727-26213746 None:intergenic 40.0%
!!! GTTTTAAGAGAGTCAGAGCA+AGG - chr5.1:26214689-26214708 MS.gene027548:CDS 40.0%
!!! TGAGAGTGTTTTGGAACCAT+TGG + chr5.1:26213865-26213884 None:intergenic 40.0%
ATGTGTCCTTGTGCTGGATA+TGG + chr5.1:26213654-26213673 None:intergenic 45.0%
CTGTCGAACCAATCTCTGAT+GGG - chr5.1:26213778-26213797 MS.gene027548:CDS 45.0%
GAATTCAATGGAGGAAGACC+AGG + chr5.1:26214095-26214114 None:intergenic 45.0%
GGAAGACCAGGTACAATCAA+AGG + chr5.1:26214083-26214102 None:intergenic 45.0%
GTGAATGGAAGAAGTTGGCT+AGG - chr5.1:26215050-26215069 MS.gene027548:CDS 45.0%
TCTGTCGAACCAATCTCTGA+TGG - chr5.1:26213777-26213796 MS.gene027548:CDS 45.0%
TGCAAAGCCATCACAATCAG+TGG - chr5.1:26214571-26214590 MS.gene027548:CDS 45.0%
TGTGGTGTGTTTGCCACAAT+GGG - chr5.1:26214868-26214887 MS.gene027548:CDS 45.0%
TGTGTCCTTGTGCTGGATAT+GGG + chr5.1:26213653-26213672 None:intergenic 45.0%
TTAGCAACATCAAGTGCCCA+AGG + chr5.1:26213954-26213973 None:intergenic 45.0%
! GCAAATAGAAGAGCTGGCTT+TGG - chr5.1:26214634-26214653 MS.gene027548:CDS 45.0%
! TTCGACAGAGATGTTTGGTG+CGG + chr5.1:26213766-26213785 None:intergenic 45.0%
!! TCTAAGTCTTGGTGTTCCTG+TGG - chr5.1:26214850-26214869 MS.gene027548:CDS 45.0%
CATTGTGGCAAACACACCAC+AGG + chr5.1:26214869-26214888 None:intergenic 50.0%
CTGTGGTGTGTTTGCCACAA+TGG - chr5.1:26214867-26214886 MS.gene027548:CDS 50.0%
GGACTAATGTGTCCTTGTGC+TGG + chr5.1:26213660-26213679 None:intergenic 50.0%
GGCAATTGATCAGCCCATTG+TGG + chr5.1:26214884-26214903 None:intergenic 50.0%
GTGATCCCATATCCAGCACA+AGG - chr5.1:26213645-26213664 MS.gene027548:CDS 50.0%
TCGTCGAACCCATCAGAGAT+TGG + chr5.1:26213789-26213808 None:intergenic 50.0%
! AGTTGGTGTGAGGCCAAAAG+AGG - chr5.1:26214934-26214953 MS.gene027548:CDS 50.0%
!! AGGGATGCTGTTTCTGAAGG+AGG - chr5.1:26215070-26215089 MS.gene027548:CDS 50.0%
!! GCTAGGGATGCTGTTTCTGA+AGG - chr5.1:26215067-26215086 MS.gene027548:CDS 50.0%
!! TCTGATGGGTTCGACGAATC+CGG - chr5.1:26213792-26213811 MS.gene027548:CDS 50.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 26213600 26215174 26213600 ID=MS.gene027548
chr5.1 mRNA 26213600 26215174 26213600 ID=MS.gene027548.t1;Parent=MS.gene027548
chr5.1 exon 26214527 26215174 26214527 ID=MS.gene027548.t1.exon1;Parent=MS.gene027548.t1
chr5.1 CDS 26214527 26215174 26214527 ID=cds.MS.gene027548.t1;Parent=MS.gene027548.t1
chr5.1 exon 26214022 26214352 26214022 ID=MS.gene027548.t1.exon2;Parent=MS.gene027548.t1
chr5.1 CDS 26214022 26214352 26214022 ID=cds.MS.gene027548.t1;Parent=MS.gene027548.t1
chr5.1 exon 26213600 26213868 26213600 ID=MS.gene027548.t1.exon3;Parent=MS.gene027548.t1
chr5.1 CDS 26213600 26213868 26213600 ID=cds.MS.gene027548.t1;Parent=MS.gene027548.t1
Gene Sequence

>MS.gene027548

ATGGTGGTACAGAGCCAAAACTACAACAACAATGTTCATGTCTTAGTGATCCCATATCCAGCACAAGGACACATTAGTCCACTAATCCAATTCTCAAAAAGATTAGTTTCAAAAGGCATCAAAACCACATTTGCAACAACCCATTACACTGTAAAATCTATCACCGCACCAAACATCTCTGTCGAACCAATCTCTGATGGGTTCGACGAATCCGGTTTTTCACAAGCCAACAATGTTGAACTCTTTCTCACTTCATTCAAAACCAATGGTTCCAAAACACTCTCAAACCTCATTCAAAAACACCAAAAAACTTCAACACCAATCACTTGCATTGTGTATGATTCTTTTCTACCTTGGGCACTTGATGTTGCTAAACAACATGGGATATATGGTGCTGCTTTTTTCACTAATTCAGCTGCTGTTTGTAACATTTTTTGTCGTATACATCATGGTTTGATTAAAACTCCTGTTGATGAATTGCCTTTGATTGTACCTGGTCTTCCTCCATTGAATTCTAGAGATCTTCCAAGTTTTATAAGATTTCCTGAAAGTTACCCTGCTTATATGGCTATGAAGTTAAATCAATTCTCAAATTTAAATCAAGCTGATTGGATGTTTGTCAATACATTTGAAGCTTTAGAAGGAGAGGTACAAATTCTTAGCATTTTATTATTCATTTTTCATTCATGAATAAAATATTTGATATTTGGTTGATGTATTTGGTCTCAAACCAAATACATTAATCTTTATCGACCAATCTTTCTCTTATGAATTTTAACGGACAATTAATTGATGATTAACAATTTTCTTTTTGTATTATAGGTTGTGAAAGGGCTAACTGAGATGTTTCCTGCTAAATTGATTGGTCCAATGGTTCCTTCTGCTTACTTAGATGGAAGAATCAAAGGAGACAAAGGGTATGGAGCAAATTTATGGAAGCCATTGAGTGAAGATTGCATTAATTGGTTAAATGCAAAGCCATCACAATCAGTGGTGTACATCTCATTTGGAAGCATGGTTTCTTTAACATCTGAGCAAATAGAAGAGCTGGCTTTGGGATTAAAAGAAAGTGAAGTGAATTTCTTATGGGTTTTAAGAGAGTCAGAGCAAGGAAAATTACCAAAGGGGTACAAAGATTCTATCAAAGAAAAGGGTATAATTGTAACATGGTGTAACCAACTAGAATTATTGGCACATGATGCTGTTGGATGTTTTGTGACACATTGTGGTTGGAATTCAACACTTGAGAGTCTAAGTCTTGGTGTTCCTGTGGTGTGTTTGCCACAATGGGCTGATCAATTGCCAGATGCAAAGTTTTTAGAGGAAATTTGGGAAGTTGGTGTGAGGCCAAAAGAGGATGAAAATGGTGTTGTGAAGAGAGAAGAATTTATGTTGAGTTTGAAGGTTGTGATGGAAGGTGAAAGAAGTGAAGTGATTAGAAGGAATGCTAGTGAATGGAAGAAGTTGGCTAGGGATGCTGTTTCTGAAGGAGGTAGCTCTGATAAGAATATTAATGAGTTTGTGGATCATTTGACTAACACAAATAAGATGGGAAATGATTTGAGTGGTTATTAG
Protein sequence

>MS.gene027548.t1

MVVQSQNYNNNVHVLVIPYPAQGHISPLIQFSKRLVSKGIKTTFATTHYTVKSITAPNISVEPISDGFDESGFSQANNVELFLTSFKTNGSKTLSNLIQKHQKTSTPITCIVYDSFLPWALDVAKQHGIYGAAFFTNSAAVCNIFCRIHHGLIKTPVDELPLIVPGLPPLNSRDLPSFIRFPESYPAYMAMKLNQFSNLNQADWMFVNTFEALEGEVVKGLTEMFPAKLIGPMVPSAYLDGRIKGDKGYGANLWKPLSEDCINWLNAKPSQSVVYISFGSMVSLTSEQIEELALGLKESEVNFLWVLRESEQGKLPKGYKDSIKEKDAKFLEEIWEVGVRPKEDENGVVKREEFMLSLKVVMEGERSEVIRRNASEWKKLARDAVSEGGSSDKNINEFVDHLTNTNKMGNDLSGY