AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene027549

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene027549.t1 MTR_5g035560 84.267 464 22 1 1 413 1 464 0.0 783
MS.gene027549.t1 MTR_5g035580 82.833 466 27 2 1 413 1 466 0.0 771
MS.gene027549.t1 MTR_6g038200 41.410 454 212 2 1 400 1 454 4.52e-123 364
MS.gene027549.t1 MTR_6g038230 41.964 448 206 2 7 400 7 454 5.81e-123 364
MS.gene027549.t1 MTR_6g038220 41.722 453 211 2 1 400 1 453 1.94e-118 352
MS.gene027549.t1 MTR_6g038240 38.889 450 221 2 11 406 11 460 1.45e-114 343
MS.gene027549.t1 MTR_7g080940 38.976 449 218 6 8 402 8 454 5.96e-109 328
MS.gene027549.t1 MTR_6g038300 38.938 452 221 2 4 400 4 455 1.08e-108 328
MS.gene027549.t1 MTR_7g080935 39.387 457 221 6 1 403 1 455 4.21e-108 327
MS.gene027549.t1 MTR_7g080950 37.277 448 227 5 8 402 3 449 1.16e-102 312
MS.gene027549.t1 MTR_8g088560 37.802 455 217 8 8 400 7 457 7.14e-98 300
MS.gene027549.t1 MTR_7g080900 34.967 449 234 8 9 401 10 456 2.61e-86 270
MS.gene027549.t1 MTR_8g083290 34.125 463 223 16 12 398 5 461 4.88e-71 231
MS.gene027549.t1 MTR_1g107380 29.325 474 257 8 10 409 12 481 2.87e-63 211
MS.gene027549.t1 MTR_8g083280 31.368 475 231 16 7 401 3 462 1.37e-62 209
MS.gene027549.t1 MTR_3g049970 31.224 474 235 13 10 402 8 471 3.49e-62 208
MS.gene027549.t1 MTR_1g107350 31.263 467 240 13 10 400 7 468 6.67e-61 204
MS.gene027549.t1 MTR_1g107375 29.670 455 250 10 9 400 6 453 1.95e-57 195
MS.gene027549.t1 MTR_1g107315 31.780 472 237 14 9 402 6 470 1.17e-55 191
MS.gene027549.t1 MTR_1g107365 28.982 452 256 10 10 400 44 491 1.73e-54 188
MS.gene027549.t1 MTR_1g107360 29.310 464 259 12 3 400 1 461 3.06e-53 184
MS.gene027549.t1 MTR_1g107285 27.862 463 256 10 10 400 7 463 4.74e-52 181
MS.gene027549.t1 MTR_3g084520 33.819 343 203 10 8 332 3 339 2.47e-51 179
MS.gene027549.t1 MTR_3g084520 48.052 77 39 1 325 400 396 472 1.09e-15 79.0
MS.gene027549.t1 MTR_7g080960 40.553 217 125 3 9 221 10 226 3.08e-51 179
MS.gene027549.t1 MTR_7g080960 34.343 198 89 4 226 401 293 471 1.87e-25 108
MS.gene027549.t1 MTR_4g095008 30.271 479 248 17 1 404 1 468 5.31e-51 180
MS.gene027549.t1 MTR_1g032490 33.438 317 185 7 9 306 8 317 5.70e-48 170
MS.gene027549.t1 MTR_4g094920 29.938 481 247 17 1 404 16 483 1.78e-44 161
MS.gene027549.t1 MTR_3g479520 26.625 477 258 12 11 402 15 484 1.90e-44 161
MS.gene027549.t1 MTR_3g084540 32.727 330 201 9 8 319 3 329 3.13e-44 160
MS.gene027549.t1 MTR_3g084540 47.436 78 39 2 325 400 396 473 1.26e-14 75.9
MS.gene027549.t1 MTR_5g464810 26.585 489 245 14 8 401 9 478 5.84e-44 159
MS.gene027549.t1 MTR_5g064240 26.585 489 245 14 8 401 9 478 5.84e-44 159
MS.gene027549.t1 MTR_0036s0220 27.329 483 244 16 11 401 12 479 1.06e-43 159
MS.gene027549.t1 MTR_3g479490 25.462 487 263 11 7 404 2 477 1.75e-43 158
MS.gene027549.t1 MTR_8g064880 32.803 314 191 8 10 306 8 318 1.02e-42 156
MS.gene027549.t1 MTR_5g016480 28.481 474 254 17 10 404 7 474 1.87e-42 155
MS.gene027549.t1 MTR_5g464760 25.257 487 256 14 8 401 9 480 4.15e-41 152
MS.gene027549.t1 MTR_3g079480 25.880 483 258 12 11 404 21 492 1.14e-40 151
MS.gene027549.t1 MTR_8g064870 31.949 313 191 8 10 306 10 316 3.82e-40 149
MS.gene027549.t1 MTR_8g064870 38.202 89 53 1 325 411 396 484 8.93e-11 63.9
MS.gene027549.t1 MTR_3g084530 31.818 330 204 9 8 319 3 329 1.72e-39 147
MS.gene027549.t1 MTR_3g084530 51.948 77 36 1 325 400 396 472 1.42e-16 81.6
MS.gene027549.t1 MTR_6g014186 26.622 447 258 15 11 401 7 439 3.72e-39 145
MS.gene027549.t1 MTR_2g008210 25.417 480 256 14 11 401 11 477 1.45e-38 145
MS.gene027549.t1 MTR_3g008010 29.499 339 198 9 2 306 1 332 6.08e-37 140
MS.gene027549.t1 MTR_7g013180 25.862 464 246 15 9 398 3 442 5.09e-36 137
MS.gene027549.t1 MTR_4g094220 25.934 482 249 12 11 397 7 475 8.98e-36 137
MS.gene027549.t1 MTR_6g013440 29.118 340 194 10 5 306 5 335 2.16e-35 136
MS.gene027549.t1 MTR_7g013260 25.771 454 248 15 11 397 6 437 4.34e-35 135
MS.gene027549.t1 MTR_7g013240 25.918 463 235 15 11 397 6 436 1.10e-34 134
MS.gene027549.t1 MTR_6g014040 28.358 335 192 11 11 306 10 335 5.64e-34 132
MS.gene027549.t1 MTR_6g014270 25.257 487 254 16 11 401 7 479 5.87e-34 132
MS.gene027549.t1 MTR_7g013200 26.030 461 246 15 11 401 5 440 6.26e-34 131
MS.gene027549.t1 MTR_6g014290 27.246 334 202 8 7 306 6 332 5.06e-33 129
MS.gene027549.t1 MTR_6g014220 27.463 335 200 8 7 306 6 332 6.08e-33 129
MS.gene027549.t1 MTR_7g011470 29.524 315 199 8 11 306 10 320 7.12e-33 129
MS.gene027549.t1 MTR_6g014250 27.246 334 202 9 7 306 6 332 3.94e-32 127
MS.gene027549.t1 MTR_7g011470 29.618 314 196 8 11 306 10 316 4.86e-32 127
MS.gene027549.t1 MTR_6g014200 25.361 485 254 16 11 401 7 477 2.45e-31 125
MS.gene027549.t1 MTR_5g072820 24.684 474 250 15 5 400 4 448 1.39e-30 122
MS.gene027549.t1 MTR_3g031450 26.154 455 256 16 11 403 18 454 2.97e-30 122
MS.gene027549.t1 MTR_5g072810 24.576 472 256 15 2 397 3 450 3.78e-30 121
MS.gene027549.t1 MTR_6g014150 25.361 485 254 17 11 401 7 477 4.15e-30 121
MS.gene027549.t1 MTR_6g013680 27.660 376 230 14 56 401 12 375 5.09e-30 119
MS.gene027549.t1 MTR_6g011340 24.532 481 263 16 11 401 10 480 5.15e-30 121
MS.gene027549.t1 MTR_7g013220 25.581 473 238 18 11 398 5 448 1.23e-29 119
MS.gene027549.t1 MTR_7g055710 27.688 372 208 14 1 333 1 350 1.54e-29 120
MS.gene027549.t1 MTR_3g479470 25.000 464 255 14 11 389 13 468 2.49e-29 119
MS.gene027549.t1 MTR_6g014310 27.300 337 192 10 11 306 11 335 3.93e-29 119
MS.gene027549.t1 MTR_5g072830 28.313 332 188 12 5 312 4 309 5.34e-29 118
MS.gene027549.t1 MTR_6g013960 26.506 332 201 11 11 306 10 334 5.42e-29 118
MS.gene027549.t1 MTR_8g059425 26.205 332 200 9 11 306 10 332 1.59e-28 117
MS.gene027549.t1 MTR_0288s0020 25.826 333 191 9 7 306 6 315 2.52e-28 116
MS.gene027549.t1 MTR_6g014187 26.364 330 204 12 11 306 10 334 2.78e-28 116
MS.gene027549.t1 MTR_5g072840 26.433 314 204 7 5 306 4 302 4.31e-28 115
MS.gene027549.t1 MTR_5g072860 25.826 484 241 18 11 406 18 471 6.70e-28 115
MS.gene027549.t1 MTR_6g013900 28.267 329 198 12 11 306 10 333 7.61e-28 115
MS.gene027549.t1 MTR_5g087620 29.518 332 188 13 11 306 10 331 1.04e-27 115
MS.gene027549.t1 MTR_4g064987 26.496 468 246 18 12 404 9 453 1.10e-27 114
MS.gene027549.t1 MTR_5g075440 25.732 478 241 20 10 402 9 457 1.75e-27 114
MS.gene027549.t1 MTR_6g013990 24.686 478 270 17 11 404 10 481 1.88e-27 114
MS.gene027549.t1 MTR_4g064987 25.813 461 252 16 12 404 9 447 3.51e-27 112
MS.gene027549.t1 MTR_6g013450 26.807 332 201 12 11 306 10 335 6.80e-27 112
MS.gene027549.t1 MTR_7g070610 26.554 354 223 10 7 333 9 352 8.07e-27 112
MS.gene027549.t1 MTR_7g070660 27.701 361 217 13 1 333 1 345 9.45e-27 112
MS.gene027549.t1 MTR_3g069690 30.625 320 182 11 6 306 3 301 2.64e-26 110
MS.gene027549.t1 MTR_6g014050 26.946 334 197 10 11 306 11 335 3.30e-26 110
MS.gene027549.t1 MTR_3g031400 29.841 315 177 11 11 307 18 306 9.67e-26 108
MS.gene027549.t1 MTR_5g016660 28.771 358 200 13 13 333 12 351 1.19e-25 108
MS.gene027549.t1 MTR_6g014020 26.488 336 196 11 11 306 10 334 1.79e-25 108
MS.gene027549.t1 MTR_6g014170 27.083 336 184 11 7 306 6 316 2.15e-25 108
MS.gene027549.t1 MTR_6g013435 28.839 267 167 7 148 401 51 307 2.16e-25 105
MS.gene027549.t1 MTR_5g031840 24.792 480 256 20 11 404 5 465 2.23e-25 107
MS.gene027549.t1 MTR_6g013920 27.052 329 202 11 11 306 10 333 3.22e-25 107
MS.gene027549.t1 MTR_5g031860 25.417 480 254 19 11 404 12 473 1.08e-24 105
MS.gene027549.t1 MTR_7g070740 25.543 368 221 13 1 333 1 350 1.22e-24 105
MS.gene027549.t1 MTR_4g485630 26.912 353 207 16 3 322 1 335 1.59e-24 105
MS.gene027549.t1 MTR_5g031830 24.948 481 256 18 11 404 12 474 2.77e-24 104
MS.gene027549.t1 MTR_0891s0010 26.370 292 152 6 171 404 7 293 9.78e-24 100
MS.gene027549.t1 MTR_7g070800 28.099 363 201 18 8 333 3 342 9.90e-24 103
MS.gene027549.t1 MTR_3g479610 25.397 315 168 7 146 402 9 314 1.29e-23 100
MS.gene027549.t1 MTR_8g465670 27.812 320 177 11 14 306 10 302 3.42e-23 101
MS.gene027549.t1 MTR_7g071040 25.967 362 230 13 1 334 7 358 8.19e-23 100
MS.gene027549.t1 MTR_7g070930 25.414 362 224 14 4 333 7 354 8.38e-23 100
MS.gene027549.t1 MTR_7g047030 26.875 320 191 10 11 307 6 305 1.25e-22 100
MS.gene027549.t1 MTR_7g047270 26.875 320 191 10 11 307 6 305 1.25e-22 100
MS.gene027549.t1 MTR_6g014240 23.690 477 236 19 10 397 6 443 1.35e-22 99.8
MS.gene027549.t1 MTR_4g108250 26.542 373 215 14 1 333 1 354 1.75e-22 99.8
MS.gene027549.t1 MTR_7g117405 26.705 352 220 11 1 327 1 339 2.41e-22 99.4
MS.gene027549.t1 MTR_6g014300 24.854 342 190 12 5 306 6 320 3.11e-22 99.0
MS.gene027549.t1 MTR_7g070860 27.778 342 185 16 6 310 2 318 3.16e-22 99.0
MS.gene027549.t1 MTR_8g066610 26.822 343 217 13 5 319 3 339 4.12e-22 98.6
MS.gene027549.t1 MTR_5g090660 27.143 350 215 14 12 336 6 340 4.49e-22 99.0
MS.gene027549.t1 MTR_3g069710 27.213 305 199 7 12 306 13 304 4.77e-22 98.2
MS.gene027549.t1 MTR_5g058320 26.687 326 193 13 11 306 10 319 5.27e-22 98.2
MS.gene027549.t1 MTR_8g077590 28.255 361 207 14 11 347 9 341 5.28e-22 98.2
MS.gene027549.t1 MTR_0184s0040 26.374 364 214 11 10 347 20 355 5.37e-22 98.2
MS.gene027549.t1 MTR_0078s0190 26.374 364 214 11 10 347 20 355 5.37e-22 98.2
MS.gene027549.t1 MTR_7g070780 23.904 502 271 16 1 405 1 488 1.32e-21 97.1
MS.gene027549.t1 MTR_1g107340 27.801 241 156 5 10 234 7 245 1.43e-21 93.6
MS.gene027549.t1 MTR_8g012745 29.084 251 150 7 102 337 106 343 1.51e-21 96.7
MS.gene027549.t1 MTR_7g102450 25.466 322 210 9 1 307 1 307 1.92e-21 96.7
MS.gene027549.t1 MTR_5g040030 26.741 359 224 13 4 333 7 355 1.94e-21 96.7
MS.gene027549.t1 MTR_8g006220 28.173 323 172 12 14 306 9 301 1.99e-21 96.7
MS.gene027549.t1 MTR_8g009050 26.480 321 192 11 9 306 4 303 3.40e-21 95.9
MS.gene027549.t1 MTR_5g090630 27.900 319 182 10 12 307 6 299 4.73e-21 95.1
MS.gene027549.t1 MTR_6g033625 23.820 466 248 16 14 389 5 453 8.10e-21 94.7
MS.gene027549.t1 MTR_0009s0240 26.667 345 211 12 7 324 3 332 8.40e-21 94.4
MS.gene027549.t1 MTR_5g090620 26.708 322 191 10 12 307 6 308 1.01e-20 94.4
MS.gene027549.t1 MTR_0078s0010 26.332 319 192 9 11 306 6 304 1.37e-20 94.0
MS.gene027549.t1 MTR_6g033725 23.992 471 256 17 14 398 5 459 1.66e-20 93.6
MS.gene027549.t1 MTR_0078s0060 25.676 370 210 13 9 347 4 339 1.74e-20 93.6
MS.gene027549.t1 MTR_7g070910 24.725 364 232 14 1 334 1 352 2.19e-20 93.6
MS.gene027549.t1 MTR_4g128720 22.149 456 270 11 10 397 14 452 2.26e-20 93.2
MS.gene027549.t1 MTR_8g009063 26.911 327 187 11 7 306 9 310 4.17e-20 92.4
MS.gene027549.t1 MTR_5g090700 26.113 337 199 13 12 317 6 323 4.41e-20 92.4
MS.gene027549.t1 MTR_5g045970 28.267 329 196 16 8 308 13 329 4.78e-20 92.4
MS.gene027549.t1 MTR_0184s0030 26.032 315 201 10 10 306 5 305 5.41e-20 92.0
MS.gene027549.t1 MTR_0078s0200 26.101 318 197 11 10 306 5 305 7.23e-20 90.1
MS.gene027549.t1 MTR_5g098930 24.928 345 191 10 10 320 4 314 7.57e-20 91.7
MS.gene027549.t1 MTR_8g009055 27.964 329 177 13 9 306 4 303 9.15e-20 91.3
MS.gene027549.t1 MTR_1g029540 24.451 319 190 12 16 313 19 307 1.03e-19 91.3
MS.gene027549.t1 MTR_6g033675 24.000 375 208 16 14 349 5 341 1.11e-19 91.3
MS.gene027549.t1 MTR_7g070940 24.719 356 226 12 3 333 1 339 1.18e-19 91.3
MS.gene027549.t1 MTR_8g071070 24.138 493 260 18 7 406 3 474 1.48e-19 90.9
MS.gene027549.t1 MTR_6g033615 24.839 467 228 16 14 389 5 439 1.97e-19 90.5
MS.gene027549.t1 MTR_8g008990 27.329 322 188 11 9 306 4 303 2.12e-19 90.5
MS.gene027549.t1 MTR_8g008990 44.000 75 42 0 322 396 390 464 1.17e-11 66.6
MS.gene027549.t1 MTR_7g071050 24.658 365 176 16 4 333 6 306 2.88e-19 89.7
MS.gene027549.t1 MTR_3g009510 26.829 369 217 13 12 349 6 352 3.62e-19 89.7
MS.gene027549.t1 MTR_5g045960 25.231 325 203 13 9 305 7 319 7.15e-19 89.0
MS.gene027549.t1 MTR_6g035295 25.460 326 207 9 9 308 10 325 9.53e-19 88.6
MS.gene027549.t1 MTR_5g090580 25.284 352 221 11 12 336 6 342 1.08e-18 88.2
MS.gene027549.t1 MTR_8g074550 27.219 338 167 16 11 306 8 308 1.30e-18 88.2
MS.gene027549.t1 MTR_8g006260 28.527 319 184 12 11 304 6 305 1.55e-18 87.8
MS.gene027549.t1 MTR_5g098960 25.153 326 217 9 12 321 8 322 1.82e-18 87.4
MS.gene027549.t1 MTR_8g012635 26.087 322 207 9 9 312 4 312 2.10e-18 87.4
MS.gene027549.t1 MTR_7g117170 27.077 325 179 11 12 306 16 312 2.41e-18 87.0
MS.gene027549.t1 MTR_5g004940 32.609 184 84 4 257 400 194 377 2.54e-18 86.7
MS.gene027549.t1 MTR_8g083300 37.037 135 76 4 12 139 8 140 3.20e-18 81.6
MS.gene027549.t1 MTR_8g006270 27.181 298 182 7 17 307 32 301 4.08e-18 86.7
MS.gene027549.t1 MTR_1g019510 26.984 315 196 10 9 306 4 301 5.33e-18 86.3
MS.gene027549.t1 MTR_6g033660 29.956 227 125 10 94 306 104 310 7.30e-18 85.9
MS.gene027549.t1 MTR_7g070810 25.000 368 211 16 3 333 1 340 7.31e-18 85.9
MS.gene027549.t1 MTR_2g098430 23.894 339 206 10 12 318 7 325 9.83e-18 85.5
MS.gene027549.t1 MTR_8g006230 29.832 238 136 8 100 325 46 264 1.10e-17 83.2
MS.gene027549.t1 MTR_8g009073 26.415 318 196 13 9 306 4 303 2.08e-17 84.3
MS.gene027549.t1 MTR_2g034990 24.839 310 203 8 15 305 15 313 2.29e-17 84.3
MS.gene027549.t1 MTR_8g012650 27.668 253 153 7 102 337 106 345 3.23e-17 84.0
MS.gene027549.t1 MTR_5g067170 24.430 307 206 9 15 305 15 311 5.30e-17 83.2
MS.gene027549.t1 MTR_4g117960 25.076 331 212 10 15 319 15 335 6.04e-17 83.2
MS.gene027549.t1 MTR_5g090600 25.836 329 205 9 12 321 6 314 7.55e-17 82.4
MS.gene027549.t1 MTR_7g102550 27.139 339 196 15 5 309 3 324 1.02e-16 82.4
MS.gene027549.t1 MTR_5g039900 23.423 333 206 10 8 308 10 325 1.03e-16 82.4
MS.gene027549.t1 MTR_0536s0020 25.904 332 200 12 15 319 22 334 1.48e-16 81.6
MS.gene027549.t1 MTR_4g024020 25.731 342 192 13 10 310 8 328 1.66e-16 81.6
MS.gene027549.t1 MTR_6g005600 24.471 331 182 12 11 306 6 303 2.83e-16 80.9
MS.gene027549.t1 MTR_4g117980 26.012 346 192 12 15 319 15 337 3.18e-16 80.9
MS.gene027549.t1 MTR_2g046750 23.964 338 204 13 18 326 12 325 3.55e-16 80.5
MS.gene027549.t1 MTR_4g128690 24.556 338 215 10 7 324 11 328 3.55e-16 80.5
MS.gene027549.t1 MTR_8g027885 26.282 312 188 9 14 306 21 309 3.96e-16 80.5
MS.gene027549.t1 MTR_7g070870 25.507 345 211 13 15 333 23 347 4.33e-16 80.5
MS.gene027549.t1 MTR_4g485590 24.233 326 196 11 5 310 3 297 4.42e-16 80.1
MS.gene027549.t1 MTR_6g035185 23.344 317 207 11 15 309 15 317 4.76e-16 80.1
MS.gene027549.t1 MTR_7g102560 24.225 355 213 14 3 323 1 333 6.58e-16 79.7
MS.gene027549.t1 MTR_6g023665 25.077 323 183 11 14 306 16 309 7.95e-16 79.3
MS.gene027549.t1 MTR_5g090670 24.074 324 199 10 12 307 6 310 8.12e-16 79.3
MS.gene027549.t1 MTR_7g470610 28.696 230 128 10 115 333 3 207 9.06e-16 77.8
MS.gene027549.t1 MTR_7g070583 28.696 230 128 10 115 333 3 207 9.06e-16 77.8
MS.gene027549.t1 MTR_7g046490 24.545 330 180 11 11 306 6 300 9.75e-16 79.3
MS.gene027549.t1 MTR_2g008225 25.220 341 219 11 7 324 11 338 1.68e-15 78.6
MS.gene027549.t1 MTR_6g036650 24.713 348 216 12 6 324 13 343 1.86e-15 78.6
MS.gene027549.t1 MTR_5g072850 24.717 441 219 18 11 403 10 385 3.14e-15 77.4
MS.gene027549.t1 MTR_3g479620 30.000 140 86 2 11 138 6 145 3.32e-15 73.6
MS.gene027549.t1 MTR_8g009067 26.935 323 188 11 9 306 4 303 3.35e-15 77.4
MS.gene027549.t1 MTR_6g052375 30.417 240 129 10 146 364 15 237 6.26e-15 75.5
MS.gene027549.t1 MTR_4g117950 26.471 340 193 14 12 319 7 321 6.60e-15 76.6
MS.gene027549.t1 MTR_4g008630 23.313 326 204 10 8 313 11 310 6.65e-15 76.6
MS.gene027549.t1 MTR_8g044140 28.750 240 146 11 109 333 87 316 7.82e-15 76.3
MS.gene027549.t1 MTR_4g082820 26.230 366 216 10 10 350 6 342 9.59e-15 76.3
MS.gene027549.t1 MTR_4g082810 26.203 374 208 13 10 350 6 344 1.33e-14 75.5
MS.gene027549.t1 MTR_5g027210 23.460 341 215 12 12 318 5 333 1.66e-14 75.5
MS.gene027549.t1 MTR_6g042310 24.561 342 224 12 4 324 8 336 2.30e-14 75.1
MS.gene027549.t1 MTR_5g070090 25.816 337 190 14 1 303 1 311 2.38e-14 75.1
MS.gene027549.t1 MTR_8g006730 23.692 325 201 10 7 306 2 304 3.23e-14 74.7
MS.gene027549.t1 MTR_8g027870 25.796 314 187 10 14 306 21 309 3.29e-14 74.7
MS.gene027549.t1 MTR_6g014190 31.884 138 89 4 171 306 7 141 3.43e-14 73.2
MS.gene027549.t1 MTR_4g117890 25.806 341 217 11 15 333 17 343 3.52e-14 74.3
MS.gene027549.t1 MTR_2g040530 23.599 339 206 11 12 320 6 321 3.74e-14 74.3
MS.gene027549.t1 MTR_2g008226 26.346 353 207 15 7 323 6 341 3.82e-14 74.3
MS.gene027549.t1 MTR_6g488280 24.332 337 180 13 8 306 3 302 3.83e-14 74.3
MS.gene027549.t1 MTR_0428s0010 24.332 337 180 13 8 306 3 302 3.83e-14 74.3
MS.gene027549.t1 MTR_4g485620 25.076 331 212 13 25 329 3 323 4.20e-14 74.3
MS.gene027549.t1 MTR_1g040310 24.857 350 219 13 13 333 17 351 4.80e-14 73.9
MS.gene027549.t1 MTR_8g008970 25.387 323 193 10 9 306 4 303 5.46e-14 74.3
MS.gene027549.t1 MTR_4g031800 24.929 353 227 14 5 333 3 341 6.25e-14 73.6
MS.gene027549.t1 MTR_4g485640 25.610 328 209 12 21 332 219 527 6.81e-14 73.9
MS.gene027549.t1 MTR_7g067120 23.779 307 195 9 11 306 9 287 1.04e-13 72.8
MS.gene027549.t1 MTR_6g035265 25.077 323 190 14 15 312 15 310 1.05e-13 73.2
MS.gene027549.t1 MTR_8g090095 24.471 331 187 13 16 316 30 327 1.79e-13 72.4
MS.gene027549.t1 MTR_2g046620 23.743 358 209 15 2 323 4 333 4.63e-13 70.9
MS.gene027549.t1 MTR_8g032950 23.750 320 197 14 12 305 13 311 4.92e-13 70.9
MS.gene027549.t1 MTR_4g077960 25.000 332 196 13 21 323 2 309 7.56e-13 70.1
MS.gene027549.t1 MTR_8g068340 23.620 326 214 9 3 306 4 316 8.60e-13 70.1
MS.gene027549.t1 MTR_6g078320 21.922 333 205 10 11 306 11 325 9.89e-13 70.1
MS.gene027549.t1 MTR_8g006710 25.000 364 224 15 7 347 2 339 1.33e-12 69.7
MS.gene027549.t1 MTR_2g059240 24.079 353 218 12 1 319 1 337 1.97e-12 68.9
MS.gene027549.t1 MTR_7g012120 25.243 309 200 12 15 305 20 315 3.03e-12 68.6
MS.gene027549.t1 MTR_8g009067 29.648 199 114 7 118 306 3 185 3.23e-12 67.8
MS.gene027549.t1 MTR_4g118000 25.237 317 193 13 15 312 16 307 3.77e-12 68.2
MS.gene027549.t1 MTR_0199s0010 23.673 245 149 7 7 219 6 244 3.78e-12 67.0
MS.gene027549.t1 MTR_5g029800 25.879 313 196 11 15 307 15 311 4.44e-12 68.2
MS.gene027549.t1 MTR_8g466240 25.501 349 213 15 11 333 8 335 5.81e-12 67.4
MS.gene027549.t1 MTR_8g007565 22.754 334 205 12 8 308 4 317 8.07e-12 67.0
MS.gene027549.t1 MTR_5g090690 24.082 245 137 7 71 307 35 238 9.04e-12 66.6
MS.gene027549.t1 MTR_5g019580 23.006 326 210 9 7 307 3 312 1.22e-11 66.6
MS.gene027549.t1 MTR_2g035020 23.734 316 199 8 15 305 15 313 2.37e-11 65.9
MS.gene027549.t1 MTR_5g090610 23.810 315 197 11 11 307 5 294 3.02e-11 65.5
MS.gene027549.t1 MTR_2g046820 23.611 360 212 12 12 337 6 336 3.37e-11 65.1
MS.gene027549.t1 MTR_8g009073 30.519 154 85 6 159 306 37 174 4.23e-11 64.3
MS.gene027549.t1 MTR_8g007650 22.455 334 206 12 8 308 4 317 5.38e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene027549.t1 AT1G24100 42.920 452 192 7 11 400 11 458 6.25e-121 359
MS.gene027549.t1 AT2G43820 41.463 451 196 8 11 402 7 448 2.46e-114 342
MS.gene027549.t1 AT2G43840 41.685 451 191 10 11 400 7 446 2.46e-110 332
MS.gene027549.t1 AT2G43840 41.463 451 192 10 11 400 7 446 3.65e-109 328
MS.gene027549.t1 AT1G05675 38.616 448 210 5 11 397 6 449 3.76e-99 303
MS.gene027549.t1 AT1G05680 38.085 449 211 5 11 397 6 449 3.24e-97 298
MS.gene027549.t1 AT2G31750 38.222 450 209 7 11 397 8 451 1.57e-93 289
MS.gene027549.t1 AT2G31750 37.719 456 215 7 11 403 8 457 6.31e-93 288
MS.gene027549.t1 AT2G31790 35.683 454 229 6 5 397 2 453 1.59e-87 273
MS.gene027549.t1 AT3G21560 28.078 463 258 10 11 400 12 472 1.20e-59 202
MS.gene027549.t1 AT4G15490 28.163 490 247 13 7 409 4 475 1.12e-58 199
MS.gene027549.t1 AT4G15480 28.955 335 208 7 8 319 16 343 1.77e-49 175
MS.gene027549.t1 AT2G23260 28.850 461 252 14 5 400 4 453 9.61e-47 167
MS.gene027549.t1 AT4G15500 30.794 315 199 7 11 311 9 318 2.79e-46 166
MS.gene027549.t1 AT2G23250 28.345 441 244 13 20 400 7 435 6.73e-46 164
MS.gene027549.t1 AT1G05530 29.936 471 230 14 11 401 5 455 3.92e-45 162
MS.gene027549.t1 AT1G22370 27.389 471 255 14 11 401 13 476 5.53e-43 157
MS.gene027549.t1 AT1G22400 25.887 479 266 11 11 405 13 486 2.02e-42 155
MS.gene027549.t1 AT1G22360 26.305 479 255 15 11 401 10 478 2.03e-42 155
MS.gene027549.t1 AT1G22380 30.747 348 201 12 5 317 7 349 5.00e-41 152
MS.gene027549.t1 AT1G78270 25.767 489 263 13 5 404 7 484 5.17e-40 149
MS.gene027549.t1 AT1G05560 32.468 308 181 9 11 307 5 296 6.00e-40 149
MS.gene027549.t1 AT1G05560 50.000 76 37 1 325 400 377 451 1.06e-14 76.3
MS.gene027549.t1 AT1G05560 32.468 308 181 9 11 307 55 346 1.31e-39 148
MS.gene027549.t1 AT1G05560 50.000 76 37 1 325 400 427 501 1.06e-14 76.3
MS.gene027549.t1 AT2G28080 27.190 331 204 7 15 318 22 342 2.06e-38 144
MS.gene027549.t1 AT1G22360 25.806 465 263 19 11 401 10 466 3.09e-38 144
MS.gene027549.t1 AT4G14090 26.134 463 261 14 3 398 5 453 4.60e-37 140
MS.gene027549.t1 AT2G36970 23.431 478 265 12 11 402 10 472 1.37e-36 140
MS.gene027549.t1 AT1G22340 27.217 327 202 8 11 306 13 334 1.58e-36 139
MS.gene027549.t1 AT4G15550 28.972 321 187 9 11 307 13 316 4.11e-34 132
MS.gene027549.t1 AT2G30140 27.484 473 242 17 7 404 9 455 4.40e-33 129
MS.gene027549.t1 AT2G30140 27.331 472 243 17 7 404 9 454 7.96e-33 129
MS.gene027549.t1 AT3G02100 25.708 459 256 14 11 398 13 457 4.16e-32 127
MS.gene027549.t1 AT3G46670 26.395 466 246 16 11 403 9 450 2.74e-31 124
MS.gene027549.t1 AT2G30150 25.983 458 247 16 11 397 13 449 1.31e-29 120
MS.gene027549.t1 AT3G46650 26.226 469 226 16 11 403 10 434 1.95e-29 119
MS.gene027549.t1 AT2G30150 25.821 457 247 16 15 400 1 436 2.56e-28 116
MS.gene027549.t1 AT2G15490 23.780 492 262 15 6 400 2 477 6.03e-28 115
MS.gene027549.t1 AT2G15480 27.666 347 202 14 10 319 9 343 2.53e-26 110
MS.gene027549.t1 AT2G15480 27.666 347 202 14 10 319 9 343 2.88e-26 110
MS.gene027549.t1 AT5G59590 24.094 469 248 16 11 400 10 449 3.47e-26 110
MS.gene027549.t1 AT4G01070 28.485 330 180 9 6 306 3 305 1.14e-25 107
MS.gene027549.t1 AT4G01070 28.485 330 180 9 6 306 3 305 1.51e-25 108
MS.gene027549.t1 AT1G01420 29.412 323 188 10 5 306 2 305 1.55e-25 108
MS.gene027549.t1 AT1G10400 24.524 473 263 17 10 402 6 464 1.80e-25 108
MS.gene027549.t1 AT1G01420 29.412 323 188 10 5 306 5 308 1.84e-25 108
MS.gene027549.t1 AT5G17050 23.454 469 260 12 11 402 12 458 7.33e-25 106
MS.gene027549.t1 AT5G59580 24.947 469 251 18 11 404 9 451 2.06e-24 105
MS.gene027549.t1 AT1G73880 26.273 491 250 20 1 402 1 468 2.63e-24 105
MS.gene027549.t1 AT2G15490 25.284 352 211 11 6 321 2 337 7.71e-24 103
MS.gene027549.t1 AT3G46660 25.160 469 248 16 12 403 15 457 8.02e-24 103
MS.gene027549.t1 AT2G36760 26.154 325 200 10 10 306 13 325 1.23e-23 103
MS.gene027549.t1 AT4G34131 27.019 359 204 19 7 324 6 347 1.24e-22 100
MS.gene027549.t1 AT5G17040 23.195 457 268 11 9 401 3 440 3.80e-22 98.2
MS.gene027549.t1 AT1G01390 25.749 334 202 8 1 310 15 326 3.97e-22 98.6
MS.gene027549.t1 AT3G46700 23.142 471 246 16 11 400 9 444 6.54e-22 97.8
MS.gene027549.t1 AT1G22370 26.846 298 155 7 162 401 14 306 7.71e-22 95.5
MS.gene027549.t1 AT1G01390 26.061 330 198 8 5 310 2 309 1.06e-21 97.4
MS.gene027549.t1 AT5G03490 25.581 344 213 11 4 324 11 334 1.06e-21 97.1
MS.gene027549.t1 AT5G38010 25.868 317 195 6 11 306 10 307 1.23e-21 97.1
MS.gene027549.t1 AT4G34135 23.647 351 225 12 7 324 7 347 2.48e-21 96.3
MS.gene027549.t1 AT2G36780 26.571 350 211 15 9 324 12 349 2.95e-21 96.3
MS.gene027549.t1 AT3G46720 25.551 454 250 15 12 400 10 440 3.82e-21 95.5
MS.gene027549.t1 AT2G36750 27.635 351 203 15 10 324 9 344 4.29e-21 95.5
MS.gene027549.t1 AT5G49690 26.849 365 217 14 10 347 9 350 1.32e-20 94.0
MS.gene027549.t1 AT4G34135 23.724 333 214 11 7 309 7 329 1.73e-20 92.0
MS.gene027549.t1 AT2G36770 25.076 331 204 12 10 310 13 329 1.98e-20 93.6
MS.gene027549.t1 AT3G46680 24.625 333 217 8 11 324 9 326 2.26e-20 93.2
MS.gene027549.t1 AT3G46690 22.727 462 264 11 11 400 9 449 2.36e-20 93.2
MS.gene027549.t1 AT5G05880 23.013 478 251 18 7 400 4 448 5.48e-20 92.0
MS.gene027549.t1 AT5G05870 27.129 317 201 9 7 306 4 307 8.19e-20 91.7
MS.gene027549.t1 AT3G16520 29.808 208 126 7 106 306 113 307 8.96e-20 91.3
MS.gene027549.t1 AT3G16520 29.808 208 126 7 106 306 113 307 9.30e-20 91.3
MS.gene027549.t1 AT3G16520 29.808 208 126 7 106 306 113 307 1.07e-19 91.3
MS.gene027549.t1 AT2G36800 25.595 336 201 13 10 312 11 330 1.72e-19 90.9
MS.gene027549.t1 AT1G30530 23.478 460 263 15 11 401 12 451 1.85e-19 90.5
MS.gene027549.t1 AT3G21800 24.865 370 221 10 8 347 2 344 3.08e-19 90.1
MS.gene027549.t1 AT5G05900 26.235 324 195 13 7 306 4 307 4.26e-19 89.4
MS.gene027549.t1 AT2G23210 27.208 283 180 12 6 275 5 274 4.40e-19 87.4
MS.gene027549.t1 AT4G34138 23.819 487 261 20 8 400 8 478 1.19e-18 88.2
MS.gene027549.t1 AT5G38040 28.889 315 168 15 19 306 18 303 1.86e-18 87.4
MS.gene027549.t1 AT1G51210 25.145 346 192 14 11 324 20 330 1.86e-17 84.3
MS.gene027549.t1 AT5G26310 26.822 343 209 14 11 331 7 329 2.59e-17 84.0
MS.gene027549.t1 AT5G17030 22.484 467 266 15 11 402 12 457 5.34e-17 83.2
MS.gene027549.t1 AT3G21780 23.494 332 219 9 10 320 3 320 1.17e-16 82.0
MS.gene027549.t1 AT5G05860 24.375 320 206 10 3 306 1 300 1.43e-16 81.6
MS.gene027549.t1 AT5G12890 23.139 497 258 17 8 401 7 482 2.28e-16 81.3
MS.gene027549.t1 AT2G26480 23.214 336 204 11 12 324 9 313 2.73e-16 80.9
MS.gene027549.t1 AT5G66690 25.076 331 198 9 11 317 7 311 4.25e-16 80.5
MS.gene027549.t1 AT3G55710 26.498 317 193 11 12 306 9 307 4.37e-16 80.5
MS.gene027549.t1 AT3G21790 23.167 341 214 12 12 320 5 329 5.06e-16 80.1
MS.gene027549.t1 AT3G53150 25.294 340 208 14 3 310 14 339 5.93e-16 80.1
MS.gene027549.t1 AT5G53990 21.784 482 259 18 7 408 2 445 8.82e-16 79.3
MS.gene027549.t1 AT3G11340 22.951 305 208 8 12 306 10 297 2.97e-15 77.8
MS.gene027549.t1 AT5G05890 23.055 347 217 11 7 324 4 329 1.20e-14 75.9
MS.gene027549.t1 AT3G21760 22.849 372 216 12 10 336 3 348 1.22e-14 75.9
MS.gene027549.t1 AT2G36790 25.836 329 208 13 10 312 12 330 2.69e-14 75.1
MS.gene027549.t1 AT3G50740 25.937 347 212 14 11 331 7 334 2.71e-14 75.1
MS.gene027549.t1 AT5G37950 25.352 213 131 3 106 306 83 279 5.32e-14 73.2
MS.gene027549.t1 AT5G37950 26.761 213 122 5 106 306 83 273 1.20e-13 72.0
MS.gene027549.t1 AT3G21750 21.530 353 232 10 10 336 3 336 1.23e-13 72.8
MS.gene027549.t1 AT2G29740 24.857 350 202 10 5 317 2 327 1.30e-13 72.8
MS.gene027549.t1 AT2G29710 23.167 341 226 8 9 324 3 332 1.03e-12 70.1
MS.gene027549.t1 AT2G29750 22.192 365 225 12 9 337 6 347 1.29e-12 69.7
MS.gene027549.t1 AT2G29730 23.894 339 218 13 8 319 2 327 5.23e-12 67.8
MS.gene027549.t1 AT3G55700 24.194 310 207 11 11 306 8 303 1.28e-11 66.6
MS.gene027549.t1 AT1G64910 20.594 471 266 16 7 402 2 439 1.69e-11 66.2
MS.gene027549.t1 AT5G54010 22.255 337 222 10 7 324 2 317 2.88e-11 65.5
MS.gene027549.t1 AT2G15490 23.243 185 117 4 6 166 2 185 5.16e-11 63.5
MS.gene027549.t1 AT1G64920 22.096 353 227 13 7 339 2 326 8.84e-11 63.9

Find 83 sgRNAs with CRISPR-Local

Find 125 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAGTATTTAGAGGAAATT+TGG 0.112057 5.1:-26202258 MS.gene027549:CDS
TTAATGCAATCTTCACTTAA+TGG 0.155045 5.1:+26202628 None:intergenic
GCTAAACAACATGGGATTTA+TGG 0.227646 5.1:-26203849 MS.gene027549:CDS
ATAAAATCTTTGTATTCTTT+TGG 0.244650 5.1:+26202448 None:intergenic
AAGGGTATGGAGCAAATTTA+TGG 0.263548 5.1:-26202654 MS.gene027549:CDS
TAAGTGAAGATTGCATTAAT+TGG 0.270840 5.1:-26202624 MS.gene027549:CDS
TGAAAGTTACCCTGCTTATA+TGG 0.273177 5.1:-26203673 MS.gene027549:CDS
AAAGTGAAGTGAATTTCTTA+TGG 0.295838 5.1:-26202501 MS.gene027549:CDS
GTTCCTTCTGCTTACTTAGA+TGG 0.303927 5.1:-26202694 MS.gene027549:CDS
GGATACGTTTGGTGCGGTTA+TGG 0.308410 5.1:+26204061 None:intergenic
GCCAGATGCAAAGTATTTAG+AGG 0.322912 5.1:-26202266 MS.gene027549:intron
AATACCTTTGAAGCTTTAGA+AGG 0.323349 5.1:-26203597 MS.gene027549:CDS
CTATTTCCTGCTAAATTGAT+TGG 0.338865 5.1:-26202724 MS.gene027549:CDS
ATATAAGCAGGGTAACTTTC+AGG 0.345186 5.1:+26203675 None:intergenic
TCTGATGGGTTCGACGAATC+TGG 0.351945 5.1:-26204026 MS.gene027549:CDS
AATGAGGTTTGAGAGTGTTT+TGG 0.357948 5.1:+26203947 None:intergenic
ATGTGTCCTTGTGCTGGGTA+TGG 0.359401 5.1:+26204167 None:intergenic
CTAATTTGAATCAAGCTGAT+TGG 0.360880 5.1:-26203629 MS.gene027549:CDS
AAGTGAAGTGAATTTCTTAT+GGG 0.361840 5.1:-26202500 MS.gene027549:CDS
TCAGTTGTGTATATCTCCTT+TGG 0.374088 5.1:-26202580 MS.gene027549:CDS
AAAGAAGTGAAGTGATTAGA+AGG 0.376196 5.1:-26202147 MS.gene027549:CDS
GTTACAGACAGCAGCTGAAT+TGG 0.378617 5.1:+26203812 None:intergenic
GGACTAATGTGTCCTTGTGC+TGG 0.381138 5.1:+26204161 None:intergenic
TCCTGTTGATGAATTGCCTT+TGG 0.385043 5.1:-26203754 MS.gene027549:CDS
TTAGAGGAAATTTGGGAAGT+TGG 0.386537 5.1:-26202250 MS.gene027549:CDS
GCAAATAGAAGAGCTGGCTT+TGG 0.394825 5.1:-26202533 MS.gene027549:CDS
CAAATAGAAGAGCTGGCTTT+GGG 0.397560 5.1:-26202532 MS.gene027549:CDS
AAAGTATTTAGAGGAAATTT+GGG 0.403427 5.1:-26202257 MS.gene027549:CDS
TCAAAACGATTAGTTTCAAA+AGG 0.423653 5.1:-26204125 MS.gene027549:CDS
TGTGTCCTTGTGCTGGGTAT+GGG 0.433513 5.1:+26204168 None:intergenic
TGCTAAATTGATTGGTCCAA+TGG 0.436681 5.1:-26202716 MS.gene027549:CDS
GTATATCTCCTTTGGAAGCA+TGG 0.437333 5.1:-26202572 MS.gene027549:CDS
ACCAAAGGCAATTCATCAAC+AGG 0.444274 5.1:+26203753 None:intergenic
CTCACTTCATTCAAAACCAA+TGG 0.450750 5.1:-26203972 MS.gene027549:CDS
TAAGAATATTGATGAGTTTG+TGG 0.457417 5.1:-26202065 MS.gene027549:CDS
GAATTCAATGGAGGAAGATC+AGG 0.457561 5.1:+26203726 None:intergenic
AGAATTTGTGTTGAGTTTGA+AGG 0.460934 5.1:-26202185 MS.gene027549:CDS
TCGTCGAACCCATCAGAGAT+TGG 0.467984 5.1:+26204032 None:intergenic
GACTAATGTGTCCTTGTGCT+GGG 0.469831 5.1:+26204162 None:intergenic
ATCTGAGCAAATAGAAGAGC+TGG 0.471976 5.1:-26202539 MS.gene027549:CDS
TTTGATGAACACAAATAAGA+AGG 0.478090 5.1:-26202038 MS.gene027549:CDS
TCAGGAAATCTTATAAAACT+TGG 0.478491 5.1:+26203693 None:intergenic
TGTATTTGAAGGTTGTGAAA+GGG 0.481098 5.1:-26202756 MS.gene027549:intron
ATTGGACCAATCAATTTAGC+AGG 0.490090 5.1:+26202718 None:intergenic
GTGAATGGAAGAAGTTAGCT+AGG 0.491635 5.1:-26202117 MS.gene027549:CDS
CTCTCCTTCTAAAGCTTCAA+AGG 0.491824 5.1:+26203593 None:intergenic
AGGCCAAAAGAGGATGAAAA+TGG 0.504839 5.1:-26202223 MS.gene027549:CDS
ATTGGTTCGACGGATACGTT+TGG 0.511541 5.1:+26204050 None:intergenic
ATCAAAGGAGACAAAGGGTA+TGG 0.516111 5.1:-26202667 MS.gene027549:CDS
AATTTCATAGCCATATAAGC+AGG 0.521666 5.1:+26203663 None:intergenic
TTAGAAGGAATGCTAGTGAA+TGG 0.522513 5.1:-26202132 MS.gene027549:CDS
GGAAGATCTCTAGAATTCAA+TGG 0.531119 5.1:+26203714 None:intergenic
TTGTATTTGAAGGTTGTGAA+AGG 0.532304 5.1:-26202757 MS.gene027549:intron
GCTAGGGATGCTGTTTCTGA+AGG 0.535276 5.1:-26202100 MS.gene027549:CDS
CTTGATGTTGCTAAACAACA+TGG 0.541379 5.1:-26203858 MS.gene027549:CDS
CTTTGAAGCTTTAGAAGGAG+AGG 0.545237 5.1:-26203592 MS.gene027549:intron
GTTGAGTTTGAAGGTTGTGA+TGG 0.549431 5.1:-26202176 MS.gene027549:CDS
TACTTAGATGGAAGAATCAA+AGG 0.552258 5.1:-26202682 MS.gene027549:CDS
GGAAGAATCAAAGGAGACAA+AGG 0.555117 5.1:-26202673 MS.gene027549:CDS
TCATACACAATGCATGTGAT+TGG 0.555679 5.1:+26203900 None:intergenic
AAGTAAGCAGAAGGAACCAT+TGG 0.560336 5.1:+26202700 None:intergenic
TCCGTCGAACCAATCTCTGA+TGG 0.561353 5.1:-26204041 MS.gene027549:CDS
CCCATCAGAGATTGGTTCGA+CGG 0.562302 5.1:+26204040 None:intergenic
GAAGAATCAAAGGAGACAAA+GGG 0.563073 5.1:-26202672 MS.gene027549:CDS
AGTTTGAAGGTTGTGATGGA+AGG 0.569295 5.1:-26202172 MS.gene027549:CDS
AGTTGGTGTGAGGCCAAAAG+AGG 0.574075 5.1:-26202233 MS.gene027549:CDS
CTTCCATCTAAGTAAGCAGA+AGG 0.580606 5.1:+26202691 None:intergenic
TTGATGAACACAAATAAGAA+GGG 0.592546 5.1:-26202037 MS.gene027549:CDS
CCGTCGAACCAATCTCTGAT+GGG 0.598551 5.1:-26204040 MS.gene027549:CDS
CAATTTAGCAGGAAATAGCT+CGG 0.603075 5.1:+26202729 None:intergenic
AAGAAGGGAAATGATTTGAG+TGG 0.604906 5.1:-26202022 MS.gene027549:CDS
GGAAGATCAGGTACAACCAA+AGG 0.604962 5.1:+26203738 None:intergenic
TAAAGAAACCATGCTTCCAA+AGG 0.612065 5.1:+26202564 None:intergenic
AGGGATGCTGTTTCTGAAGG+AGG 0.617628 5.1:-26202097 MS.gene027549:CDS
ATATACACAACTGATTGTGA+TGG 0.621040 5.1:+26202589 None:intergenic
TGAATGGAAGAAGTTAGCTA+GGG 0.630021 5.1:-26202116 MS.gene027549:CDS
TTAGCAACATCAAGTGCCCA+AGG 0.641911 5.1:+26203867 None:intergenic
TTGATGTTGCTAAACAACAT+GGG 0.649754 5.1:-26203857 MS.gene027549:CDS
ATTTCATAGCCATATAAGCA+GGG 0.651404 5.1:+26203664 None:intergenic
AAATTTGGGAAGTTGGTGTG+AGG 0.651908 5.1:-26202243 MS.gene027549:CDS
AGATCTCTAGAATTCAATGG+AGG 0.691278 5.1:+26203717 None:intergenic
TTCGACGGATACGTTTGGTG+CGG 0.700262 5.1:+26204055 None:intergenic
GTAATCCCATACCCAGCACA+AGG 0.709137 5.1:-26204173 MS.gene027549:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATAAAAATCAAAAAGA+GGG + chr5.1:26203433-26203452 None:intergenic 10.0%
!! TAAAAATAAAAATCAAAAAG+AGG + chr5.1:26203434-26203453 None:intergenic 10.0%
!!! AGAAAACAATTTTTTTTTTT+TGG + chr5.1:26203154-26203173 None:intergenic 10.0%
!! AATAGATAGAATAAAATACT+TGG + chr5.1:26203032-26203051 None:intergenic 15.0%
!! CTTTGAATTTATACTTAAAA+TGG - chr5.1:26203005-26203024 MS.gene027549:intron 15.0%
!! GATATTTAGTTAATGTATTT+GGG - chr5.1:26202751-26202770 MS.gene027549:intron 15.0%
!! TGATATTTAGTTAATGTATT+TGG - chr5.1:26202750-26202769 MS.gene027549:intron 15.0%
!!! AAAGATTTTATCAAAGAAAA+AGG - chr5.1:26203791-26203810 MS.gene027549:CDS 15.0%
!!! ATAAAATCTTTGTATTCTTT+TGG + chr5.1:26203782-26203801 None:intergenic 15.0%
!! ATAAATAGTCATGAATATTG+TGG + chr5.1:26202891-26202910 None:intergenic 20.0%
!!! AAAAAGGTATAATTGTAACA+TGG - chr5.1:26203807-26203826 MS.gene027549:CDS 20.0%
!!! AAAGTATTTAGAGGAAATTT+GGG - chr5.1:26203970-26203989 MS.gene027549:CDS 20.0%
!!! TTTTTTGGTATTTTTGAATG+AGG + chr5.1:26202299-26202318 None:intergenic 20.0%
! AAAAATCAAAAAGAGGGAAT+TGG + chr5.1:26203427-26203446 None:intergenic 25.0%
! AAAGTGAAGTGAATTTCTTA+TGG - chr5.1:26203726-26203745 MS.gene027549:CDS 25.0%
! AAATCACATCTTACATGTTT+GGG - chr5.1:26203295-26203314 MS.gene027549:intron 25.0%
! AAGTGAAGTGAATTTCTTAT+GGG - chr5.1:26203727-26203746 MS.gene027549:CDS 25.0%
! ATTAAAAGTTGTGACGTTTA+TGG - chr5.1:26203384-26203403 MS.gene027549:intron 25.0%
! TAAGAATATTGATGAGTTTG+TGG - chr5.1:26204162-26204181 MS.gene027549:CDS 25.0%
! TAAGTGAAGATTGCATTAAT+TGG - chr5.1:26203603-26203622 MS.gene027549:CDS 25.0%
! TATTATAATAAAGGGTTGTG+AGG + chr5.1:26203365-26203384 None:intergenic 25.0%
! TCAGGAAATCTTATAAAACT+TGG + chr5.1:26202537-26202556 None:intergenic 25.0%
! TTAATGCAATCTTCACTTAA+TGG + chr5.1:26203602-26203621 None:intergenic 25.0%
! TTGATGAACACAAATAAGAA+GGG - chr5.1:26204190-26204209 MS.gene027549:CDS 25.0%
! TTTGATGAACACAAATAAGA+AGG - chr5.1:26204189-26204208 MS.gene027549:CDS 25.0%
!! CAAAGTATTTAGAGGAAATT+TGG - chr5.1:26203969-26203988 MS.gene027549:CDS 25.0%
!! GCTTTTCTATTTGTATTTGA+AGG - chr5.1:26203460-26203479 MS.gene027549:intron 25.0%
!!! AAACTAATCGTTTTGAGAAT+TGG + chr5.1:26202098-26202117 None:intergenic 25.0%
!!! ATTTTTTGTCGTATACATCA+TGG - chr5.1:26202438-26202457 MS.gene027549:CDS 25.0%
!!! CTAAACACATTTCAGTTTTT+TGG + chr5.1:26202959-26202978 None:intergenic 25.0%
!!! GTGAATATTTTAGTCATGAA+TGG + chr5.1:26202692-26202711 None:intergenic 25.0%
!!! TCAAAACGATTAGTTTCAAA+AGG - chr5.1:26202102-26202121 MS.gene027549:CDS 25.0%
AAAGAAGTGAAGTGATTAGA+AGG - chr5.1:26204080-26204099 MS.gene027549:CDS 30.0%
AATTTCATAGCCATATAAGC+AGG + chr5.1:26202567-26202586 None:intergenic 30.0%
AGAATTTGTGTTGAGTTTGA+AGG - chr5.1:26204042-26204061 MS.gene027549:CDS 30.0%
ATATACACAACTGATTGTGA+TGG + chr5.1:26203641-26203660 None:intergenic 30.0%
ATTTCATAGCCATATAAGCA+GGG + chr5.1:26202566-26202585 None:intergenic 30.0%
CTAATTTGAATCAAGCTGAT+TGG - chr5.1:26202598-26202617 MS.gene027549:CDS 30.0%
CTATTTCCTGCTAAATTGAT+TGG - chr5.1:26203503-26203522 MS.gene027549:intron 30.0%
GAAATCACATCTTACATGTT+TGG - chr5.1:26203294-26203313 MS.gene027549:intron 30.0%
GTGTAACCAACTAGAATTAT+TGG - chr5.1:26203829-26203848 MS.gene027549:CDS 30.0%
TACTTAGATGGAAGAATCAA+AGG - chr5.1:26203545-26203564 MS.gene027549:intron 30.0%
TGTATTTGAAGGTTGTGAAA+GGG - chr5.1:26203471-26203490 MS.gene027549:intron 30.0%
TTGATGTTGCTAAACAACAT+GGG - chr5.1:26202370-26202389 MS.gene027549:intron 30.0%
TTGTATTTGAAGGTTGTGAA+AGG - chr5.1:26203470-26203489 MS.gene027549:intron 30.0%
! GTATGATTCTTTTCTACCTT+GGG - chr5.1:26202344-26202363 MS.gene027549:intron 30.0%
! TGTATGATTCTTTTCTACCT+TGG - chr5.1:26202343-26202362 MS.gene027549:intron 30.0%
!! AATACCTTTGAAGCTTTAGA+AGG - chr5.1:26202630-26202649 MS.gene027549:CDS 30.0%
!!! TGATTGGTGTTGAAGTTTTT+TGG + chr5.1:26202314-26202333 None:intergenic 30.0%
AAGAAGGGAAATGATTTGAG+TGG - chr5.1:26204205-26204224 MS.gene027549:CDS 35.0%
ATATAAGCAGGGTAACTTTC+AGG + chr5.1:26202555-26202574 None:intergenic 35.0%
ATTGGACCAATCAATTTAGC+AGG + chr5.1:26203512-26203531 None:intergenic 35.0%
CAATTTAGCAGGAAATAGCT+CGG + chr5.1:26203501-26203520 None:intergenic 35.0%
CATGTGCCAATAATTCTAGT+TGG + chr5.1:26203838-26203857 None:intergenic 35.0%
CTCACTTCATTCAAAACCAA+TGG - chr5.1:26202255-26202274 MS.gene027549:CDS 35.0%
CTTGATGTTGCTAAACAACA+TGG - chr5.1:26202369-26202388 MS.gene027549:intron 35.0%
GAAGAATCAAAGGAGACAAA+GGG - chr5.1:26203555-26203574 MS.gene027549:intron 35.0%
GCTAAACAACATGGGATTTA+TGG - chr5.1:26202378-26202397 MS.gene027549:intron 35.0%
TAAAGAAACCATGCTTCCAA+AGG + chr5.1:26203666-26203685 None:intergenic 35.0%
TCAGTTGTGTATATCTCCTT+TGG - chr5.1:26203647-26203666 MS.gene027549:CDS 35.0%
TCATACACAATGCATGTGAT+TGG + chr5.1:26202330-26202349 None:intergenic 35.0%
TCCTCTAAATACTTTGCATC+TGG + chr5.1:26203965-26203984 None:intergenic 35.0%
TGAAAGTTACCCTGCTTATA+TGG - chr5.1:26202554-26202573 MS.gene027549:CDS 35.0%
TGAATGGAAGAAGTTAGCTA+GGG - chr5.1:26204111-26204130 MS.gene027549:CDS 35.0%
TTAGAAGGAATGCTAGTGAA+TGG - chr5.1:26204095-26204114 MS.gene027549:CDS 35.0%
TTAGAGGAAATTTGGGAAGT+TGG - chr5.1:26203977-26203996 MS.gene027549:CDS 35.0%
! AAGGGTATGGAGCAAATTTA+TGG - chr5.1:26203573-26203592 MS.gene027549:intron 35.0%
! ACACCATTTTCATCCTCTTT+TGG + chr5.1:26204010-26204029 None:intergenic 35.0%
! TGCTAAATTGATTGGTCCAA+TGG - chr5.1:26203511-26203530 MS.gene027549:intron 35.0%
!! AGATCTCTAGAATTCAATGG+AGG + chr5.1:26202513-26202532 None:intergenic 35.0%
!! GGAAGATCTCTAGAATTCAA+TGG + chr5.1:26202516-26202535 None:intergenic 35.0%
!!! AATGAGGTTTGAGAGTGTTT+TGG + chr5.1:26202283-26202302 None:intergenic 35.0%
!!! CGTTTTGAGAATTGGATTAG+TGG + chr5.1:26202090-26202109 None:intergenic 35.0%
AAGTAAGCAGAAGGAACCAT+TGG + chr5.1:26203530-26203549 None:intergenic 40.0%
ACACTTGAGAGTCTAAGTCT+TGG - chr5.1:26203899-26203918 MS.gene027549:CDS 40.0%
ACCAAAGGCAATTCATCAAC+AGG + chr5.1:26202477-26202496 None:intergenic 40.0%
AGGCCAAAAGAGGATGAAAA+TGG - chr5.1:26204004-26204023 MS.gene027549:CDS 40.0%
ATCAAAGGAGACAAAGGGTA+TGG - chr5.1:26203560-26203579 MS.gene027549:intron 40.0%
ATCTGAGCAAATAGAAGAGC+TGG - chr5.1:26203688-26203707 MS.gene027549:CDS 40.0%
CTTCCATCTAAGTAAGCAGA+AGG + chr5.1:26203539-26203558 None:intergenic 40.0%
GAATTCAATGGAGGAAGATC+AGG + chr5.1:26202504-26202523 None:intergenic 40.0%
GGAAGAATCAAAGGAGACAA+AGG - chr5.1:26203554-26203573 MS.gene027549:intron 40.0%
GTGAATGGAAGAAGTTAGCT+AGG - chr5.1:26204110-26204129 MS.gene027549:CDS 40.0%
GTTCCTTCTGCTTACTTAGA+TGG - chr5.1:26203533-26203552 MS.gene027549:intron 40.0%
GTTGAGTTTGAAGGTTGTGA+TGG - chr5.1:26204051-26204070 MS.gene027549:CDS 40.0%
TGTTGTGTGTTTGCCACAAT+GGG - chr5.1:26203928-26203947 MS.gene027549:CDS 40.0%
TTATTGGCACATGATGCTGT+TGG - chr5.1:26203845-26203864 MS.gene027549:CDS 40.0%
! AGTTTGAAGGTTGTGATGGA+AGG - chr5.1:26204055-26204074 MS.gene027549:CDS 40.0%
! GCCAGATGCAAAGTATTTAG+AGG - chr5.1:26203961-26203980 MS.gene027549:CDS 40.0%
! GGATGTTTTGTGACACATTG+TGG - chr5.1:26203866-26203885 MS.gene027549:CDS 40.0%
! GTATATCTCCTTTGGAAGCA+TGG - chr5.1:26203655-26203674 MS.gene027549:CDS 40.0%
! GTTTTGTGACACATTGTGGT+TGG - chr5.1:26203870-26203889 MS.gene027549:CDS 40.0%
! TCCTGTTGATGAATTGCCTT+TGG - chr5.1:26202473-26202492 MS.gene027549:CDS 40.0%
!! AAATTTGGGAAGTTGGTGTG+AGG - chr5.1:26203984-26204003 MS.gene027549:CDS 40.0%
!! CAAATAGAAGAGCTGGCTTT+GGG - chr5.1:26203695-26203714 MS.gene027549:CDS 40.0%
!! CTCTCCTTCTAAAGCTTCAA+AGG + chr5.1:26202637-26202656 None:intergenic 40.0%
!! CTTTGAAGCTTTAGAAGGAG+AGG - chr5.1:26202635-26202654 MS.gene027549:CDS 40.0%
!!! GTTTTAAGAGAGTCAGAGCA+AGG - chr5.1:26203749-26203768 MS.gene027549:CDS 40.0%
!!! TGAGAGTGTTTTGGAACCAT+TGG + chr5.1:26202274-26202293 None:intergenic 40.0%
CATTGTGGCAAACACACAAC+AGG + chr5.1:26203929-26203948 None:intergenic 45.0%
CTGTTGTGTGTTTGCCACAA+TGG - chr5.1:26203927-26203946 MS.gene027549:CDS 45.0%
GACTAATGTGTCCTTGTGCT+GGG + chr5.1:26202068-26202087 None:intergenic 45.0%
GGAAGATCAGGTACAACCAA+AGG + chr5.1:26202492-26202511 None:intergenic 45.0%
GTTACAGACAGCAGCTGAAT+TGG + chr5.1:26202418-26202437 None:intergenic 45.0%
TTAGCAACATCAAGTGCCCA+AGG + chr5.1:26202363-26202382 None:intergenic 45.0%
! GCAAATAGAAGAGCTGGCTT+TGG - chr5.1:26203694-26203713 MS.gene027549:CDS 45.0%
!! ATTGGTTCGACGGATACGTT+TGG + chr5.1:26202180-26202199 None:intergenic 45.0%
!!! AACTTTTAATATTATAATAA+AGG + chr5.1:26203374-26203393 None:intergenic 5.0%
!!! ACTTTTAATATTATAATAAA+GGG + chr5.1:26203373-26203392 None:intergenic 5.0%
!!! GAAAATAAATTAATTTTATT+TGG - chr5.1:26202849-26202868 MS.gene027549:intron 5.0%
ATGTGTCCTTGTGCTGGGTA+TGG + chr5.1:26202063-26202082 None:intergenic 50.0%
CCGTCGAACCAATCTCTGAT+GGG - chr5.1:26202187-26202206 MS.gene027549:CDS 50.0%
GGACTAATGTGTCCTTGTGC+TGG + chr5.1:26202069-26202088 None:intergenic 50.0%
GGCAATTGATCAGCCCATTG+TGG + chr5.1:26203944-26203963 None:intergenic 50.0%
GTAATCCCATACCCAGCACA+AGG - chr5.1:26202054-26202073 MS.gene027549:CDS 50.0%
TCCGTCGAACCAATCTCTGA+TGG - chr5.1:26202186-26202205 MS.gene027549:CDS 50.0%
TCGTCGAACCCATCAGAGAT+TGG + chr5.1:26202198-26202217 None:intergenic 50.0%
TGTGTCCTTGTGCTGGGTAT+GGG + chr5.1:26202062-26202081 None:intergenic 50.0%
! AGTTGGTGTGAGGCCAAAAG+AGG - chr5.1:26203994-26204013 MS.gene027549:CDS 50.0%
! TTCGACGGATACGTTTGGTG+CGG + chr5.1:26202175-26202194 None:intergenic 50.0%
!! AGGGATGCTGTTTCTGAAGG+AGG - chr5.1:26204130-26204149 MS.gene027549:CDS 50.0%
!! CCCATCAGAGATTGGTTCGA+CGG + chr5.1:26202190-26202209 None:intergenic 50.0%
!! GCTAGGGATGCTGTTTCTGA+AGG - chr5.1:26204127-26204146 MS.gene027549:CDS 50.0%
!! GGATACGTTTGGTGCGGTTA+TGG + chr5.1:26202169-26202188 None:intergenic 50.0%
!! TCTGATGGGTTCGACGAATC+TGG - chr5.1:26202201-26202220 MS.gene027549:CDS 50.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 26202015 26204234 26202015 ID=MS.gene027549
chr5.1 mRNA 26202015 26204234 26202015 ID=MS.gene027549.t1;Parent=MS.gene027549
chr5.1 exon 26203593 26204234 26203593 ID=MS.gene027549.t1.exon1;Parent=MS.gene027549.t1
chr5.1 CDS 26203593 26204234 26203593 ID=cds.MS.gene027549.t1;Parent=MS.gene027549.t1
chr5.1 exon 26202437 26202767 26202437 ID=MS.gene027549.t1.exon2;Parent=MS.gene027549.t1
chr5.1 CDS 26202437 26202767 26202437 ID=cds.MS.gene027549.t1;Parent=MS.gene027549.t1
chr5.1 exon 26202015 26202283 26202015 ID=MS.gene027549.t1.exon3;Parent=MS.gene027549.t1
chr5.1 CDS 26202015 26202283 26202015 ID=cds.MS.gene027549.t1;Parent=MS.gene027549.t1
Gene Sequence

>MS.gene027549

ATGGTGGTAAAGAGTGACAACAACAATGTTCATATGTTAGTAATCCCATACCCAGCACAAGGACACATTAGTCCACTAATCCAATTCTCAAAACGATTAGTTTCAAAAGGCATCAAAACAACATTTGCAACAACACATTACACTGTTCAATCCATAACCGCACCAAACGTATCCGTCGAACCAATCTCTGATGGGTTCGACGAATCTGGTTTTTCACAAGCTAGCAATGTTGAACTCTTTCTCACTTCATTCAAAACCAATGGTTCCAAAACACTCTCAAACCTCATTCAAAAATACCAAAAAACTTCAACACCAATCACATGCATTGTGTATGATTCTTTTCTACCTTGGGCACTTGATGTTGCTAAACAACATGGGATTTATGGTGCTGCATTTTTCACCAATTCAGCTGCTGTCTGTAACATTTTTTGTCGTATACATCATGGTTTGATCGAAACTCCTGTTGATGAATTGCCTTTGGTTGTACCTGATCTTCCTCCATTGAATTCTAGAGATCTTCCAAGTTTTATAAGATTTCCTGAAAGTTACCCTGCTTATATGGCTATGAAATTGAGTCAATTCTCTAATTTGAATCAAGCTGATTGGATGTTTGTCAATACCTTTGAAGCTTTAGAAGGAGAGGTATACATTCTTAGCATTTTATTATTCATTTTCCATTCATGACTAAAATATTCACTCGCATAAAATAGTTGAATCAACAAAAATTAATGTATTTGATATTTAGTTAATGTATTTGGGCATCAACTTTTATGAACTAATCTTTCTCTTATAATTAAGAACGAAGAGAATACTCTATATGAGTATATAACATAAGAAAATAAATTAATTTTATTTGGTTTGATTATTTTTTCTCCACAATATTCATGACTATTTATTACTTAGTCTTACATATATACAAAAGTCAAGTCAAATGTATATTACCAAAAAACTGAAATGTGTTTAGTTTACATTGAAACTAAATACAGTTGACTTTGAATTTATACTTAAAATGGACCAAGTATTTTATTCTATCTATTTCTATTTCTATATCTACAATAAATAGTTAAAATTTTATTAATTTGAAAACAACAAATAAATAGTCAACTATTAGTGACAGCAACTATTGTTTTCTTATTCCAAAAAAAAAAAATTGTTTTCTTAGTTTTTTTGACATCAAGTATTTTATTTTTCTATAAAATCATAATTCATATTTTGTTGAGTTGTGAGATCATGTTCTTTTATTTTATTTTAGTTTTTGATACTACTACAAGCATGCAATGAAATCACATCTTACATGTTTGGGTGTGTTTTTATTTTTTATATATATAGAAAAATGCTAATAAGTATCCTCACAACCCTTTATTATAATATTAAAAGTTGTGACGTTTATGGATAATGTGATTATTAATCCAATTCCCTCTTTTTGATTTTTATTTTTATTTTTTGCTTTTCTATTTGTATTTGAAGGTTGTGAAAGGGTTAACCGAGCTATTTCCTGCTAAATTGATTGGTCCAATGGTTCCTTCTGCTTACTTAGATGGAAGAATCAAAGGAGACAAAGGGTATGGAGCAAATTTATGGAAGCCATTAAGTGAAGATTGCATTAATTGGTTAAATGCAAAGCCATCACAATCAGTTGTGTATATCTCCTTTGGAAGCATGGTTTCTTTAACATCTGAGCAAATAGAAGAGCTGGCTTTGGGATTAAAAGAAAGTGAAGTGAATTTCTTATGGGTTTTAAGAGAGTCAGAGCAAGGAAAATTACCAAAAGAATACAAAGATTTTATCAAAGAAAAAGGTATAATTGTAACATGGTGTAACCAACTAGAATTATTGGCACATGATGCTGTTGGATGTTTTGTGACACATTGTGGTTGGAATTCGACACTTGAGAGTCTAAGTCTTGGCGTTCCTGTTGTGTGTTTGCCACAATGGGCTGATCAATTGCCAGATGCAAAGTATTTAGAGGAAATTTGGGAAGTTGGTGTGAGGCCAAAAGAGGATGAAAATGGTGTTGTGAAGAGAGAAGAATTTGTGTTGAGTTTGAAGGTTGTGATGGAAGGTGAAAGAAGTGAAGTGATTAGAAGGAATGCTAGTGAATGGAAGAAGTTAGCTAGGGATGCTGTTTCTGAAGGAGGTAGCTCTGATAAGAATATTGATGAGTTTGTGGATCATTTGATGAACACAAATAAGAAGGGAAATGATTTGAGTGGTTACTAG
Protein sequence

>MS.gene027549.t1

MVVKSDNNNVHMLVIPYPAQGHISPLIQFSKRLVSKGIKTTFATTHYTVQSITAPNVSVEPISDGFDESGFSQASNVELFLTSFKTNGSKTLSNLIQKYQKTSTPITCIVYDSFLPWALDVAKQHGIYGAAFFTNSAAVCNIFCRIHHGLIETPVDELPLVVPDLPPLNSRDLPSFIRFPESYPAYMAMKLSQFSNLNQADWMFVNTFEALEGEVVKGLTELFPAKLIGPMVPSAYLDGRIKGDKGYGANLWKPLSEDCINWLNAKPSQSVVYISFGSMVSLTSEQIEELALGLKESEVNFLWVLRESEQGKLPKEYKDFIKEKDAKYLEEIWEVGVRPKEDENGVVKREEFVLSLKVVMEGERSEVIRRNASEWKKLARDAVSEGGSSDKNIDEFVDHLMNTNKKGNDLSGY