Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028526.t1 | XP_003608337.1 | 98.4 | 317 | 5 | 0 | 1 | 317 | 1 | 317 | 1.10E-182 | 649 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028526.t1 | Q40784 | 64.4 | 298 | 103 | 2 | 15 | 310 | 25 | 321 | 9.0e-117 | 421.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028526.t1 | G7JU00 | 98.4 | 317 | 5 | 0 | 1 | 317 | 1 | 317 | 7.9e-183 | 649.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene028526 | MS.gene82807 | PPI |
| MS.gene028526 | MS.gene024663 | PPI |
| MS.gene028526 | MS.gene037013 | PPI |
| MS.gene060400 | MS.gene028526 | PPI |
| MS.gene028526 | MS.gene053078 | PPI |
| MS.gene028526 | MS.gene032655 | PPI |
| MS.gene028526 | MS.gene072750 | PPI |
| MS.gene028526 | MS.gene57695 | PPI |
| MS.gene028526 | MS.gene21644 | PPI |
| MS.gene73340 | MS.gene028526 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028526.t1 | MTR_4g092780 | 98.423 | 317 | 5 | 0 | 1 | 317 | 1 | 317 | 0.0 | 646 |
| MS.gene028526.t1 | MTR_7g116910 | 89.841 | 315 | 32 | 0 | 1 | 315 | 1 | 315 | 0.0 | 598 |
| MS.gene028526.t1 | MTR_5g009670 | 73.443 | 305 | 79 | 2 | 1 | 304 | 1 | 304 | 1.28e-169 | 473 |
| MS.gene028526.t1 | MTR_2g036810 | 66.113 | 301 | 99 | 2 | 16 | 314 | 14 | 313 | 5.09e-153 | 431 |
| MS.gene028526.t1 | MTR_4g005740 | 63.823 | 293 | 103 | 2 | 20 | 310 | 14 | 305 | 9.77e-143 | 405 |
| MS.gene028526.t1 | MTR_5g009670 | 71.200 | 250 | 70 | 2 | 1 | 249 | 1 | 249 | 2.48e-130 | 372 |
| MS.gene028526.t1 | MTR_6g004520 | 56.314 | 293 | 124 | 3 | 18 | 310 | 7 | 295 | 8.32e-118 | 342 |
| MS.gene028526.t1 | MTR_6g004520 | 56.314 | 293 | 124 | 3 | 18 | 310 | 65 | 353 | 2.41e-117 | 343 |
| MS.gene028526.t1 | MTR_6g004520 | 56.314 | 293 | 124 | 3 | 18 | 310 | 54 | 342 | 2.51e-117 | 342 |
| MS.gene028526.t1 | MTR_5g020640 | 31.673 | 281 | 172 | 7 | 23 | 301 | 50 | 312 | 3.45e-34 | 127 |
| MS.gene028526.t1 | MTR_5g020640 | 35.260 | 173 | 103 | 4 | 23 | 195 | 50 | 213 | 5.35e-24 | 98.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028526.t1 | AT3G61610 | 73.817 | 317 | 83 | 0 | 1 | 317 | 1 | 317 | 0.0 | 504 |
| MS.gene028526.t1 | AT3G61610 | 73.955 | 311 | 81 | 0 | 7 | 317 | 1 | 311 | 1.20e-178 | 496 |
| MS.gene028526.t1 | AT4G23730 | 65.763 | 295 | 100 | 1 | 11 | 304 | 12 | 306 | 1.87e-153 | 432 |
| MS.gene028526.t1 | AT4G23730 | 64.452 | 301 | 100 | 2 | 11 | 304 | 12 | 312 | 7.80e-151 | 426 |
| MS.gene028526.t1 | AT5G57330 | 63.576 | 302 | 107 | 2 | 11 | 310 | 5 | 305 | 7.05e-148 | 418 |
| MS.gene028526.t1 | AT4G23730 | 67.658 | 269 | 86 | 1 | 37 | 304 | 3 | 271 | 3.11e-143 | 405 |
| MS.gene028526.t1 | AT3G01590 | 63.356 | 292 | 104 | 2 | 19 | 310 | 8 | 296 | 4.10e-134 | 383 |
| MS.gene028526.t1 | AT3G01590 | 63.356 | 292 | 104 | 2 | 19 | 310 | 8 | 296 | 4.10e-134 | 383 |
| MS.gene028526.t1 | AT5G14500 | 59.932 | 292 | 114 | 2 | 19 | 310 | 8 | 296 | 4.29e-131 | 375 |
| MS.gene028526.t1 | AT5G14500 | 55.205 | 317 | 114 | 3 | 19 | 310 | 8 | 321 | 1.31e-124 | 360 |
| MS.gene028526.t1 | AT4G25900 | 50.000 | 290 | 139 | 2 | 15 | 304 | 32 | 315 | 6.85e-109 | 320 |
| MS.gene028526.t1 | AT5G66530 | 32.014 | 278 | 169 | 8 | 25 | 300 | 19 | 278 | 1.51e-36 | 132 |
| MS.gene028526.t1 | AT5G66530 | 32.014 | 278 | 169 | 8 | 25 | 300 | 47 | 306 | 4.23e-36 | 132 |
| MS.gene028526.t1 | AT5G66530 | 32.014 | 278 | 169 | 8 | 25 | 300 | 47 | 306 | 4.23e-36 | 132 |
| MS.gene028526.t1 | AT5G66530 | 32.014 | 278 | 169 | 8 | 25 | 300 | 47 | 306 | 4.23e-36 | 132 |
Find 86 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCCTCCTCGTATTGCTTT+TGG | 0.257552 | 4.1:+20469333 | None:intergenic |
| TATTCCTCACTCGTGATATC+AGG | 0.261723 | 4.1:+20468794 | None:intergenic |
| CGCATACCATACATACTTGT+TGG | 0.306903 | 4.1:-20468743 | MS.gene028526:CDS |
| TATGCGAATGAGAAACTAAA+TGG | 0.347249 | 4.1:+20468760 | None:intergenic |
| TATACCTGTGGAAAACATAT+TGG | 0.354365 | 4.1:+20469309 | None:intergenic |
| CCCGTGCCGAAGCGCCTTGT+GGG | 0.355163 | 4.1:+20470119 | None:intergenic |
| TGCAATTAGGTAAGCTTACA+TGG | 0.360588 | 4.1:-20469924 | MS.gene028526:intron |
| TCTAGAACTGCGATTATGTT+TGG | 0.370057 | 4.1:+20468159 | None:intergenic |
| TACCTCGGATTCAAATGTTA+TGG | 0.374354 | 4.1:+20468359 | None:intergenic |
| CTCCCTGTCCACTCCTCTCC+AGG | 0.395754 | 4.1:+20467721 | None:intergenic |
| CACTTCATGGCGTAATGAGC+AGG | 0.401746 | 4.1:-20469892 | MS.gene028526:CDS |
| AAAATTTGTATAGTGAGATA+AGG | 0.404611 | 4.1:-20468455 | MS.gene028526:intron |
| CTTCAGATAATTTGAGTAGC+AGG | 0.408420 | 4.1:+20469053 | None:intergenic |
| ACTTGTTGGTTTCTGACATA+AGG | 0.410514 | 4.1:-20468729 | MS.gene028526:intron |
| AAATTTGTATAGTGAGATAA+GGG | 0.410995 | 4.1:-20468454 | MS.gene028526:intron |
| AAACAAATGCTTTGTGTAGA+TGG | 0.429208 | 4.1:-20467775 | MS.gene028526:CDS |
| GCAAATAGCATACCAACATC+AGG | 0.441237 | 4.1:+20468093 | None:intergenic |
| ATGGAGCGCAGGTCACTTCA+TGG | 0.445349 | 4.1:-20469905 | MS.gene028526:CDS |
| GAATTTACAAAGGACTTGAA+TGG | 0.456569 | 4.1:-20470166 | MS.gene028526:CDS |
| TCTCCAGGCTTCAAGTTCAC+AGG | 0.459284 | 4.1:+20467736 | None:intergenic |
| ACCCGTGCCGAAGCGCCTTG+TGG | 0.465263 | 4.1:+20470118 | None:intergenic |
| GACTTCGATTTCTTCTCCCA+TGG | 0.466878 | 4.1:+20467826 | None:intergenic |
| CAGAAACCAACAAGTATGTA+TGG | 0.472937 | 4.1:+20468737 | None:intergenic |
| AAGCCTGGAGAGGAGTGGAC+AGG | 0.473546 | 4.1:-20467724 | MS.gene028526:CDS |
| TTCTAGATCATGAGAGGAAA+CGG | 0.476080 | 4.1:-20468143 | MS.gene028526:CDS |
| TCACTCGTGATATCAGGGTT+AGG | 0.481124 | 4.1:+20468800 | None:intergenic |
| CCCCACAAGGCGCTTCGGCA+CGG | 0.482644 | 4.1:-20470120 | MS.gene028526:CDS |
| GGGGCATTCGGCAGCTGTGT+GGG | 0.490352 | 4.1:-20470206 | MS.gene028526:CDS |
| GTTTGGAAACTGTGGATCGC+TGG | 0.500146 | 4.1:-20469170 | MS.gene028526:CDS |
| TCGAAGTCGATGGTGGACTT+TGG | 0.502611 | 4.1:-20467811 | MS.gene028526:CDS |
| TATAGTGAGATAAGGGTTGA+AGG | 0.506399 | 4.1:-20468447 | MS.gene028526:intron |
| TCGGACCCCACAAGGCGCTT+CGG | 0.506831 | 4.1:-20470125 | MS.gene028526:CDS |
| AAACCTGTGAACTTGAAGCC+TGG | 0.507242 | 4.1:-20467739 | MS.gene028526:CDS |
| GTGCAGCCGTGTGGAATCCA+TGG | 0.507273 | 4.1:-20467843 | MS.gene028526:intron |
| AGCCTGGAGAGGAGTGGACA+GGG | 0.507327 | 4.1:-20467723 | MS.gene028526:CDS |
| CCCACAAGGCGCTTCGGCAC+GGG | 0.509186 | 4.1:-20470119 | MS.gene028526:intron |
| TCATTTGGAGGCAAAGGAGG+AGG | 0.514508 | 4.1:+20469100 | None:intergenic |
| TTGGAATCATTTGGAGGCAA+AGG | 0.515039 | 4.1:+20469094 | None:intergenic |
| CGAGTGTCTCTTACGACAGA+TGG | 0.533298 | 4.1:-20468826 | MS.gene028526:CDS |
| ACGGACATACATTATAAGAA+AGG | 0.533476 | 4.1:-20468124 | MS.gene028526:CDS |
| TCATAATAGTTTGGAAACTG+TGG | 0.533947 | 4.1:-20469178 | MS.gene028526:intron |
| TTGCCTCCAAATGATTCCAA+TGG | 0.540698 | 4.1:-20469091 | MS.gene028526:CDS |
| TTTCCATTGGAATCATTTGG+AGG | 0.543188 | 4.1:+20469088 | None:intergenic |
| TGGGGCATTCGGCAGCTGTG+TGG | 0.545391 | 4.1:-20470207 | MS.gene028526:CDS |
| GAATGAGAAACTAAATGGCT+TGG | 0.548213 | 4.1:+20468765 | None:intergenic |
| TCTTGAGACACTTGATTACC+TGG | 0.549791 | 4.1:-20468424 | MS.gene028526:CDS |
| CTTCTCCCATGGATTCCACA+CGG | 0.552012 | 4.1:+20467837 | None:intergenic |
| ATGTGAAGTGCTGGCCACAT+AGG | 0.567231 | 4.1:-20469027 | MS.gene028526:intron |
| GAATCATTTGGAGGCAAAGG+AGG | 0.570451 | 4.1:+20469097 | None:intergenic |
| TGTGGATCGCTGGAGCTGCA+TGG | 0.572350 | 4.1:-20469160 | MS.gene028526:CDS |
| TGCCATAACATTTGAATCCG+AGG | 0.572417 | 4.1:-20468361 | MS.gene028526:intron |
| TTGATTGTAGACACTTTCAA+AGG | 0.575710 | 4.1:-20469358 | MS.gene028526:intron |
| ATTCCTCACTCGTGATATCA+GGG | 0.579407 | 4.1:+20468795 | None:intergenic |
| CTGAAGAAGATGTGAAGTGC+TGG | 0.583076 | 4.1:-20469036 | MS.gene028526:CDS |
| ACTTCATGGCGTAATGAGCA+GGG | 0.587126 | 4.1:-20469891 | MS.gene028526:CDS |
| GGTAAGCTTACATGGAGCGC+AGG | 0.592548 | 4.1:-20469916 | MS.gene028526:CDS |
| AAGGAAGGTCTCCCTGATGT+TGG | 0.594415 | 4.1:-20468105 | MS.gene028526:intron |
| GATTTGCAAGAAATAAAATG+TGG | 0.594654 | 4.1:-20469138 | MS.gene028526:CDS |
| TTTGAGTAGCAGGTCGACAA+AGG | 0.600438 | 4.1:+20469063 | None:intergenic |
| CCGTGCCGAAGCGCCTTGTG+GGG | 0.608350 | 4.1:+20470120 | None:intergenic |
| GAATCGATCAAGTTGTACTT+CGG | 0.613420 | 4.1:-20470144 | MS.gene028526:CDS |
| GAAGAAATCGAAGTCGATGG+TGG | 0.614525 | 4.1:-20467818 | MS.gene028526:CDS |
| TGTGAACTTGAAGCCTGGAG+AGG | 0.615658 | 4.1:-20467734 | MS.gene028526:CDS |
| CAATCAAGTTAATACCTATG+TGG | 0.617553 | 4.1:+20469013 | None:intergenic |
| ACTTGAAGCCTGGAGAGGAG+TGG | 0.621676 | 4.1:-20467729 | MS.gene028526:CDS |
| ACATACATTATAAGAAAGGA+AGG | 0.622005 | 4.1:-20468120 | MS.gene028526:CDS |
| ATTTGCAAGAAATAAAATGT+GGG | 0.626744 | 4.1:-20469137 | MS.gene028526:CDS |
| CGACTAGGTCTCGACAGAAG+TGG | 0.627675 | 4.1:-20467658 | MS.gene028526:CDS |
| CAAATAGCATACCAACATCA+GGG | 0.631758 | 4.1:+20468094 | None:intergenic |
| ACTGCTATTCACAAGCTGCA+AGG | 0.635776 | 4.1:-20469862 | MS.gene028526:intron |
| GGAGAAGAAATCGAAGTCGA+TGG | 0.636854 | 4.1:-20467821 | MS.gene028526:CDS |
| CTGGAGAGGAGTGGACAGGG+AGG | 0.637296 | 4.1:-20467720 | MS.gene028526:CDS |
| TCGCAGTTCTAGATCATGAG+AGG | 0.640361 | 4.1:-20468149 | MS.gene028526:CDS |
| GTTGTACTTCGGACCCCACA+AGG | 0.644189 | 4.1:-20470133 | MS.gene028526:CDS |
| TGCAGCCGTGTGGAATCCAT+GGG | 0.655533 | 4.1:-20467842 | MS.gene028526:intron |
| TGTTTCTTTGTGCAGCCGTG+TGG | 0.657679 | 4.1:-20467852 | MS.gene028526:intron |
| AAAGCACGAGTTACAGAACA+AGG | 0.658067 | 4.1:-20468387 | MS.gene028526:CDS |
| TTCATGGCGTAATGAGCAGG+GGG | 0.663337 | 4.1:-20469889 | MS.gene028526:CDS |
| TCGTAAGAGACACTCGAAGG+CGG | 0.666141 | 4.1:+20468833 | None:intergenic |
| CTTCATGGCGTAATGAGCAG+GGG | 0.667301 | 4.1:-20469890 | MS.gene028526:CDS |
| AGCAGCAACTGAATTTACAA+AGG | 0.671488 | 4.1:-20470176 | MS.gene028526:CDS |
| CACTTCTGTCGAGACCTAGT+CGG | 0.679916 | 4.1:+20467659 | None:intergenic |
| TAACCCTGATATCACGAGTG+AGG | 0.687144 | 4.1:-20468798 | MS.gene028526:CDS |
| GCGCCAAAAGCAATACGAGG+AGG | 0.709878 | 4.1:-20469336 | MS.gene028526:CDS |
| CTGTCGTAAGAGACACTCGA+AGG | 0.711416 | 4.1:+20468830 | None:intergenic |
| AAGGCGCCAAAAGCAATACG+AGG | 0.738080 | 4.1:-20469339 | MS.gene028526:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAGTATTTTTATTTTTAGA+TGG | - | chr4.1:20468042-20468061 | MS.gene028526:intron | 10.0% |
| !! | GTTTATTAATGATAAATACT+TGG | - | chr4.1:20469293-20469312 | MS.gene028526:intron | 15.0% |
| !!! | AAAAACTCATTTTTGATAAT+AGG | + | chr4.1:20468125-20468144 | None:intergenic | 15.0% |
| !!! | ATTTTTATTTTTAGATGGTA+TGG | - | chr4.1:20468047-20468066 | MS.gene028526:intron | 15.0% |
| !!! | GTAAATTAAGCTTTTATTTT+TGG | - | chr4.1:20469578-20469597 | MS.gene028526:intron | 15.0% |
| !!! | TTTTCTTCAAATATGATAAT+TGG | - | chr4.1:20469372-20469391 | MS.gene028526:intron | 15.0% |
| !! | AAAATTTGTATAGTGAGATA+AGG | - | chr4.1:20469404-20469423 | MS.gene028526:intron | 20.0% |
| !! | AAATTTGTATAGTGAGATAA+GGG | - | chr4.1:20469405-20469424 | MS.gene028526:intron | 20.0% |
| !! | ATTTGCAAGAAATAAAATGT+GGG | - | chr4.1:20468722-20468741 | MS.gene028526:intron | 20.0% |
| !! | CCAAACTATTATGAAAATTT+AGG | + | chr4.1:20468675-20468694 | None:intergenic | 20.0% |
| !! | TAAAAGCTTAATTTACATCT+TGG | + | chr4.1:20469574-20469593 | None:intergenic | 20.0% |
| !! | TACTTTAATCTAAATGAAAC+AGG | + | chr4.1:20468627-20468646 | None:intergenic | 20.0% |
| !! | TATATATTCCAAAACTATCA+GGG | + | chr4.1:20469351-20469370 | None:intergenic | 20.0% |
| !! | TTATATATTCCAAAACTATC+AGG | + | chr4.1:20469352-20469371 | None:intergenic | 20.0% |
| !! | TTCAATATCAATACATGATA+AGG | - | chr4.1:20467836-20467855 | MS.gene028526:CDS | 20.0% |
| !!! | ACAATCATTTCTTTTTTTGA+GGG | - | chr4.1:20469178-20469197 | MS.gene028526:intron | 20.0% |
| !!! | ATTTGTGTTTTTTGTTACTT+TGG | + | chr4.1:20469865-20469884 | None:intergenic | 20.0% |
| !!! | CCTAAATTTTCATAATAGTT+TGG | - | chr4.1:20468672-20468691 | MS.gene028526:intron | 20.0% |
| !!! | TAAACATTTAAAACCTTGTT+CGG | + | chr4.1:20469909-20469928 | None:intergenic | 20.0% |
| !!! | TCTCAAATCTCAATAATTTT+GGG | - | chr4.1:20468601-20468620 | MS.gene028526:intron | 20.0% |
| !!! | TTTGTGTTTTTTGTTACTTT+GGG | + | chr4.1:20469864-20469883 | None:intergenic | 20.0% |
| ! | AAGCTATTCTGTTTAATCTA+TGG | - | chr4.1:20469934-20469953 | MS.gene028526:intron | 25.0% |
| ! | AATACATGATAAGGAAAACT+TGG | - | chr4.1:20467845-20467864 | MS.gene028526:intron | 25.0% |
| ! | AATCAATTGCAAATAAGAGA+AGG | + | chr4.1:20468487-20468506 | None:intergenic | 25.0% |
| ! | ACATACATTATAAGAAAGGA+AGG | - | chr4.1:20469739-20469758 | MS.gene028526:intron | 25.0% |
| ! | ACCAATATTTCTTTGTAAAG+AGG | - | chr4.1:20468441-20468460 | MS.gene028526:CDS | 25.0% |
| ! | AGTTTGAGAATATATATTCG+AGG | - | chr4.1:20467886-20467905 | MS.gene028526:intron | 25.0% |
| ! | GATTTGCAAGAAATAAAATG+TGG | - | chr4.1:20468721-20468740 | MS.gene028526:intron | 25.0% |
| ! | TAAGATATATGTGTTATGCA+TGG | + | chr4.1:20468650-20468669 | None:intergenic | 25.0% |
| ! | TATGGTAATTTCCTTGATAT+TGG | - | chr4.1:20469967-20469986 | MS.gene028526:intron | 25.0% |
| ! | TATGTATGTATACTTCTTCA+GGG | - | chr4.1:20469271-20469290 | MS.gene028526:intron | 25.0% |
| ! | TTGAAAACCTCTTTATTCAT+AGG | + | chr4.1:20469633-20469652 | None:intergenic | 25.0% |
| ! | TTTCATTCCATGTTAATAGA+CGG | + | chr4.1:20468906-20468925 | None:intergenic | 25.0% |
| !! | ATCTTTCTTTTCTTGCAATT+AGG | - | chr4.1:20467922-20467941 | MS.gene028526:intron | 25.0% |
| !! | GTCTCAAATCTCAATAATTT+TGG | - | chr4.1:20468600-20468619 | MS.gene028526:intron | 25.0% |
| !! | GTTGATTGATTTATTTGCAT+CGG | - | chr4.1:20467772-20467791 | MS.gene028526:CDS | 25.0% |
| !!! | ATCTATGGTATGTAGTTTTA+TGG | - | chr4.1:20469949-20469968 | MS.gene028526:intron | 25.0% |
| !!! | ATTCATGAGCAATTGTTTTA+TGG | + | chr4.1:20468872-20468891 | None:intergenic | 25.0% |
| !!! | GACAATCATTTCTTTTTTTG+AGG | - | chr4.1:20469177-20469196 | MS.gene028526:intron | 25.0% |
| !!! | TAAGCTTTTATTTTTGGTTG+TGG | - | chr4.1:20469584-20469603 | MS.gene028526:intron | 25.0% |
| !!! | TTGTGTTTTTTGTTACTTTG+GGG | + | chr4.1:20469863-20469882 | None:intergenic | 25.0% |
| AAACAAATGCTTTGTGTAGA+TGG | - | chr4.1:20470084-20470103 | MS.gene028526:intron | 30.0% | |
| ACGGACATACATTATAAGAA+AGG | - | chr4.1:20469735-20469754 | MS.gene028526:intron | 30.0% | |
| ATAAGTGCAAAAGAAAACGA+GGG | - | chr4.1:20468285-20468304 | MS.gene028526:intron | 30.0% | |
| CAATCAAGTTAATACCTATG+TGG | + | chr4.1:20468849-20468868 | None:intergenic | 30.0% | |
| CTATGTATGTATACTTCTTC+AGG | - | chr4.1:20469270-20469289 | MS.gene028526:intron | 30.0% | |
| GAATTTACAAAGGACTTGAA+TGG | - | chr4.1:20467693-20467712 | MS.gene028526:CDS | 30.0% | |
| GCCTCTTTACAAAGAAATAT+TGG | + | chr4.1:20468445-20468464 | None:intergenic | 30.0% | |
| GTAGTAATTAGTTATACCTG+TGG | + | chr4.1:20468565-20468584 | None:intergenic | 30.0% | |
| GTAGTGTACAAGAAAAAAGA+TGG | + | chr4.1:20469221-20469240 | None:intergenic | 30.0% | |
| TATAAGTGCAAAAGAAAACG+AGG | - | chr4.1:20468284-20468303 | MS.gene028526:intron | 30.0% | |
| TATACCTGTGGAAAACATAT+TGG | + | chr4.1:20468553-20468572 | None:intergenic | 30.0% | |
| TATGCGAATGAGAAACTAAA+TGG | + | chr4.1:20469102-20469121 | None:intergenic | 30.0% | |
| TCATAATAGTTTGGAAACTG+TGG | - | chr4.1:20468681-20468700 | MS.gene028526:intron | 30.0% | |
| TCTATATTTCCATATCCTGT+CGG | + | chr4.1:20468415-20468434 | None:intergenic | 30.0% | |
| TGAATTAATATCCAACTCTG+TGG | + | chr4.1:20468383-20468402 | None:intergenic | 30.0% | |
| TGTACAAGAAAAAAGATGGT+TGG | + | chr4.1:20469217-20469236 | None:intergenic | 30.0% | |
| TGTTATGAAATACATATCCG+CGG | + | chr4.1:20468148-20468167 | None:intergenic | 30.0% | |
| TTGATTGTAGACACTTTCAA+AGG | - | chr4.1:20468501-20468520 | MS.gene028526:intron | 30.0% | |
| ! | AATTCCAATATGTTTTCCAC+AGG | - | chr4.1:20468546-20468565 | MS.gene028526:intron | 30.0% |
| ! | ATCAAAAATGAGTTTTTCCG+CGG | - | chr4.1:20468128-20468147 | MS.gene028526:CDS | 30.0% |
| ! | GATTTTCCATTGGAATCATT+TGG | + | chr4.1:20468777-20468796 | None:intergenic | 30.0% |
| !!! | TGTGTTTTTTGTTACTTTGG+GGG | + | chr4.1:20469862-20469881 | None:intergenic | 30.0% |
| AACCTCTTTATTCATAGGCT+AGG | + | chr4.1:20469628-20469647 | None:intergenic | 35.0% | |
| ACTACAAATTTCCGCAGAAA+TGG | - | chr4.1:20468210-20468229 | MS.gene028526:intron | 35.0% | |
| AGCAGCAACTGAATTTACAA+AGG | - | chr4.1:20467683-20467702 | MS.gene028526:CDS | 35.0% | |
| ATTAATATCCAACTCTGTGG+TGG | + | chr4.1:20468380-20468399 | None:intergenic | 35.0% | |
| ATTCACTCCGTCTATTAACA+TGG | - | chr4.1:20468896-20468915 | MS.gene028526:intron | 35.0% | |
| CAAATAGCATACCAACATCA+GGG | + | chr4.1:20469768-20469787 | None:intergenic | 35.0% | |
| CAGAAACCAACAAGTATGTA+TGG | + | chr4.1:20469125-20469144 | None:intergenic | 35.0% | |
| CTTCAGATAATTTGAGTAGC+AGG | + | chr4.1:20468809-20468828 | None:intergenic | 35.0% | |
| GAATGAGAAACTAAATGGCT+TGG | + | chr4.1:20469097-20469116 | None:intergenic | 35.0% | |
| GTACACTACAAATTGACTGT+TGG | - | chr4.1:20469232-20469251 | MS.gene028526:intron | 35.0% | |
| TACCTCGGATTCAAATGTTA+TGG | + | chr4.1:20469503-20469522 | None:intergenic | 35.0% | |
| TATAGTGAGATAAGGGTTGA+AGG | - | chr4.1:20469412-20469431 | MS.gene028526:intron | 35.0% | |
| TGCAATTAGGTAAGCTTACA+TGG | - | chr4.1:20467935-20467954 | MS.gene028526:intron | 35.0% | |
| TTCTAGATCATGAGAGGAAA+CGG | - | chr4.1:20469716-20469735 | MS.gene028526:intron | 35.0% | |
| TTGGTTTCTGACATAAGGTA+TGG | - | chr4.1:20469135-20469154 | MS.gene028526:CDS | 35.0% | |
| TTTCCATTGGAATCATTTGG+AGG | + | chr4.1:20468774-20468793 | None:intergenic | 35.0% | |
| ! | ATTTCCTTGATATTGGTGAC+AGG | - | chr4.1:20469974-20469993 | MS.gene028526:intron | 35.0% |
| ! | GAATCGATCAAGTTGTACTT+CGG | - | chr4.1:20467715-20467734 | MS.gene028526:CDS | 35.0% |
| ! | GGTATGGATTTGTTTACTGT+CGG | - | chr4.1:20468063-20468082 | MS.gene028526:intron | 35.0% |
| ! | TAGACATGTGAAAGTGTGAA+TGG | - | chr4.1:20468347-20468366 | MS.gene028526:intron | 35.0% |
| ! | TCTAGAACTGCGATTATGTT+TGG | + | chr4.1:20469703-20469722 | None:intergenic | 35.0% |
| !! | ACTTGTTGGTTTCTGACATA+AGG | - | chr4.1:20469130-20469149 | MS.gene028526:CDS | 35.0% |
| !! | TTCTGTAACTCGTGCTTTTT+GGG | + | chr4.1:20469470-20469489 | None:intergenic | 35.0% |
| AAAGAAAACGAGGGAAGAGA+AGG | - | chr4.1:20468294-20468313 | MS.gene028526:intron | 40.0% | |
| AAAGCACGAGTTACAGAACA+AGG | - | chr4.1:20469472-20469491 | MS.gene028526:intron | 40.0% | |
| AACTCAAAACTGGTGCAATG+GGG | + | chr4.1:20469006-20469025 | None:intergenic | 40.0% | |
| AGAACCCACAAGATTTACCT+CGG | + | chr4.1:20469518-20469537 | None:intergenic | 40.0% | |
| ATTCCTCACTCGTGATATCA+GGG | + | chr4.1:20469067-20469086 | None:intergenic | 40.0% | |
| CAGAAATGGAATGAGTTCAG+TGG | - | chr4.1:20468224-20468243 | MS.gene028526:intron | 40.0% | |
| CGCATACCATACATACTTGT+TGG | - | chr4.1:20469116-20469135 | MS.gene028526:CDS | 40.0% | |
| CGGTCACTACAAAAACTTGA+TGG | + | chr4.1:20470183-20470202 | None:intergenic | 40.0% | |
| CTGAACTCATTCCATTTCTG+CGG | + | chr4.1:20468224-20468243 | None:intergenic | 40.0% | |
| GAACTCAAAACTGGTGCAAT+GGG | + | chr4.1:20469007-20469026 | None:intergenic | 40.0% | |
| GAATCCGAGGTAAATCTTGT+GGG | - | chr4.1:20469511-20469530 | MS.gene028526:intron | 40.0% | |
| GCAAATAGCATACCAACATC+AGG | + | chr4.1:20469769-20469788 | None:intergenic | 40.0% | |
| GTCCTAGCCTATGAATAAAG+AGG | - | chr4.1:20469623-20469642 | MS.gene028526:intron | 40.0% | |
| TATTCCTCACTCGTGATATC+AGG | + | chr4.1:20469068-20469087 | None:intergenic | 40.0% | |
| TCAGCTTCAAACAACCAAAG+TGG | + | chr4.1:20468963-20468982 | None:intergenic | 40.0% | |
| TCTTGAGACACTTGATTACC+TGG | - | chr4.1:20469435-20469454 | MS.gene028526:intron | 40.0% | |
| TGAATCCGAGGTAAATCTTG+TGG | - | chr4.1:20469510-20469529 | MS.gene028526:intron | 40.0% | |
| TGCCATAACATTTGAATCCG+AGG | - | chr4.1:20469498-20469517 | MS.gene028526:intron | 40.0% | |
| TTGCCTCCAAATGATTCCAA+TGG | - | chr4.1:20468768-20468787 | MS.gene028526:CDS | 40.0% | |
| TTGGAATCATTTGGAGGCAA+AGG | + | chr4.1:20468768-20468787 | None:intergenic | 40.0% | |
| ! | AGTTTTTGTAGTGACCGACT+AGG | - | chr4.1:20470186-20470205 | MS.gene028526:CDS | 40.0% |
| ! | ATTCCTCCTCGTATTGCTTT+TGG | + | chr4.1:20468529-20468548 | None:intergenic | 40.0% |
| ! | GTCGACAAAGGATTTTCCAT+TGG | + | chr4.1:20468787-20468806 | None:intergenic | 40.0% |
| ! | GTTCTGTAACTCGTGCTTTT+TGG | + | chr4.1:20469471-20469490 | None:intergenic | 40.0% |
| ! | TGTTCTTCTTTCTGCCACTT+TGG | - | chr4.1:20468946-20468965 | MS.gene028526:intron | 40.0% |
| !! | TAACTCGTGCTTTTTGGGAA+AGG | + | chr4.1:20469465-20469484 | None:intergenic | 40.0% |
| AAACCTGTGAACTTGAAGCC+TGG | - | chr4.1:20470120-20470139 | MS.gene028526:CDS | 45.0% | |
| AATTCAGCGAAAACTCCGAC+AGG | - | chr4.1:20468397-20468416 | MS.gene028526:CDS | 45.0% | |
| ACTGCTATTCACAAGCTGCA+AGG | - | chr4.1:20467997-20468016 | MS.gene028526:intron | 45.0% | |
| ACTTCATGGCGTAATGAGCA+GGG | - | chr4.1:20467968-20467987 | MS.gene028526:intron | 45.0% | |
| ATAAACACGATCCACCTGCT+CGG | + | chr4.1:20469671-20469690 | None:intergenic | 45.0% | |
| CCAAAACTATCAGGGTGAGA+AGG | + | chr4.1:20469343-20469362 | None:intergenic | 45.0% | |
| CTGAAGAAGATGTGAAGTGC+TGG | - | chr4.1:20468823-20468842 | MS.gene028526:CDS | 45.0% | |
| GAAGAAATCGAAGTCGATGG+TGG | - | chr4.1:20470041-20470060 | MS.gene028526:intron | 45.0% | |
| GAATCATTTGGAGGCAAAGG+AGG | + | chr4.1:20468765-20468784 | None:intergenic | 45.0% | |
| GACTTCGATTTCTTCTCCCA+TGG | + | chr4.1:20470036-20470055 | None:intergenic | 45.0% | |
| GGAACTCAAAACTGGTGCAA+TGG | + | chr4.1:20469008-20469027 | None:intergenic | 45.0% | |
| GGAGAAGAAATCGAAGTCGA+TGG | - | chr4.1:20470038-20470057 | MS.gene028526:intron | 45.0% | |
| TAACCCTGATATCACGAGTG+AGG | - | chr4.1:20469061-20469080 | MS.gene028526:CDS | 45.0% | |
| TCACTCGTGATATCAGGGTT+AGG | + | chr4.1:20469062-20469081 | None:intergenic | 45.0% | |
| TCAGCCTGTCACCAATATCA+AGG | + | chr4.1:20469981-20470000 | None:intergenic | 45.0% | |
| TTTGAGTAGCAGGTCGACAA+AGG | + | chr4.1:20468799-20468818 | None:intergenic | 45.0% | |
| ! | CCTTCTCACCCTGATAGTTT+TGG | - | chr4.1:20469340-20469359 | MS.gene028526:CDS | 45.0% |
| !! | CTTTTTGGGAAAGGTTGTCC+AGG | + | chr4.1:20469456-20469475 | None:intergenic | 45.0% |
| !! | GTTTACTGTCGGTGCTAATC+AGG | - | chr4.1:20468074-20468093 | MS.gene028526:intron | 45.0% |
| !! | TCGCAGTTCTAGATCATGAG+AGG | - | chr4.1:20469710-20469729 | MS.gene028526:intron | 45.0% |
| AAGGAAGGTCTCCCTGATGT+TGG | - | chr4.1:20469754-20469773 | MS.gene028526:intron | 50.0% | |
| CACTTCATGGCGTAATGAGC+AGG | - | chr4.1:20467967-20467986 | MS.gene028526:intron | 50.0% | |
| CACTTCTGTCGAGACCTAGT+CGG | + | chr4.1:20470203-20470222 | None:intergenic | 50.0% | |
| CGAGTGTCTCTTACGACAGA+TGG | - | chr4.1:20469033-20469052 | MS.gene028526:CDS | 50.0% | |
| CGTGACATCAAAGCCGAACA+AGG | - | chr4.1:20469893-20469912 | MS.gene028526:CDS | 50.0% | |
| CTGTCGTAAGAGACACTCGA+AGG | + | chr4.1:20469032-20469051 | None:intergenic | 50.0% | |
| CTTCATGGCGTAATGAGCAG+GGG | - | chr4.1:20467969-20467988 | MS.gene028526:intron | 50.0% | |
| CTTCTCCCATGGATTCCACA+CGG | + | chr4.1:20470025-20470044 | None:intergenic | 50.0% | |
| GCATTCAACCACCACAGAGT+TGG | - | chr4.1:20468369-20468388 | MS.gene028526:CDS | 50.0% | |
| GCGAAAACTCCGACAGGATA+TGG | - | chr4.1:20468403-20468422 | MS.gene028526:CDS | 50.0% | |
| GTTTGGAAACTGTGGATCGC+TGG | - | chr4.1:20468689-20468708 | MS.gene028526:intron | 50.0% | |
| TCATTTGGAGGCAAAGGAGG+AGG | + | chr4.1:20468762-20468781 | None:intergenic | 50.0% | |
| TCGAAGGCGGAACTCAAAAC+TGG | + | chr4.1:20469016-20469035 | None:intergenic | 50.0% | |
| TCGTAAGAGACACTCGAAGG+CGG | + | chr4.1:20469029-20469048 | None:intergenic | 50.0% | |
| TGTGAACTTGAAGCCTGGAG+AGG | - | chr4.1:20470125-20470144 | MS.gene028526:CDS | 50.0% | |
| TGTTTCTTTGTGCAGCCGTG+TGG | - | chr4.1:20470007-20470026 | MS.gene028526:intron | 50.0% | |
| TTCATGGCGTAATGAGCAGG+GGG | - | chr4.1:20467970-20467989 | MS.gene028526:intron | 50.0% | |
| ! | AAGGCGCCAAAAGCAATACG+AGG | - | chr4.1:20468520-20468539 | MS.gene028526:intron | 50.0% |
| ! | TCTCCAGGCTTCAAGTTCAC+AGG | + | chr4.1:20470126-20470145 | None:intergenic | 50.0% |
| !! | ATGTGAAGTGCTGGCCACAT+AGG | - | chr4.1:20468832-20468851 | MS.gene028526:CDS | 50.0% |
| !! | TCGAAGTCGATGGTGGACTT+TGG | - | chr4.1:20470048-20470067 | MS.gene028526:intron | 50.0% |
| ACTTGAAGCCTGGAGAGGAG+TGG | - | chr4.1:20470130-20470149 | MS.gene028526:CDS | 55.0% | |
| ATGGAGCGCAGGTCACTTCA+TGG | - | chr4.1:20467954-20467973 | MS.gene028526:intron | 55.0% | |
| CGACTAGGTCTCGACAGAAG+TGG | - | chr4.1:20470201-20470220 | MS.gene028526:CDS | 55.0% | |
| GATCCACCTGCTCGGAAGAA+AGG | + | chr4.1:20469663-20469682 | None:intergenic | 55.0% | |
| GATCCTTTCTTCCGAGCAGG+TGG | - | chr4.1:20469657-20469676 | MS.gene028526:intron | 55.0% | |
| GCGCCAAAAGCAATACGAGG+AGG | - | chr4.1:20468523-20468542 | MS.gene028526:intron | 55.0% | |
| GGTAAGCTTACATGGAGCGC+AGG | - | chr4.1:20467943-20467962 | MS.gene028526:intron | 55.0% | |
| GTCGATCCTTTCTTCCGAGC+AGG | - | chr4.1:20469654-20469673 | MS.gene028526:intron | 55.0% | |
| GTTGTACTTCGGACCCCACA+AGG | - | chr4.1:20467726-20467745 | MS.gene028526:CDS | 55.0% | |
| TGCAGCCGTGTGGAATCCAT+GGG | - | chr4.1:20470017-20470036 | MS.gene028526:intron | 55.0% | |
| AAGCCTGGAGAGGAGTGGAC+AGG | - | chr4.1:20470135-20470154 | MS.gene028526:CDS | 60.0% | |
| AGCCTGGAGAGGAGTGGACA+GGG | - | chr4.1:20470136-20470155 | MS.gene028526:CDS | 60.0% | |
| GTGCAGCCGTGTGGAATCCA+TGG | - | chr4.1:20470016-20470035 | MS.gene028526:intron | 60.0% | |
| TGTGGATCGCTGGAGCTGCA+TGG | - | chr4.1:20468699-20468718 | MS.gene028526:intron | 60.0% | |
| CTCCCTGTCCACTCCTCTCC+AGG | + | chr4.1:20470141-20470160 | None:intergenic | 65.0% | |
| CTGGAGAGGAGTGGACAGGG+AGG | - | chr4.1:20470139-20470158 | MS.gene028526:CDS | 65.0% | |
| ! | GGGGCATTCGGCAGCTGTGT+GGG | - | chr4.1:20467653-20467672 | MS.gene028526:CDS | 65.0% |
| ! | TCGGACCCCACAAGGCGCTT+CGG | - | chr4.1:20467734-20467753 | MS.gene028526:CDS | 65.0% |
| ! | TGGGGCATTCGGCAGCTGTG+TGG | - | chr4.1:20467652-20467671 | MS.gene028526:CDS | 65.0% |
| ! | ACCCGTGCCGAAGCGCCTTG+TGG | + | chr4.1:20467744-20467763 | None:intergenic | 70.0% |
| ! | CCCACAAGGCGCTTCGGCAC+GGG | - | chr4.1:20467740-20467759 | MS.gene028526:CDS | 70.0% |
| ! | CCCCACAAGGCGCTTCGGCA+CGG | - | chr4.1:20467739-20467758 | MS.gene028526:CDS | 70.0% |
| ! | CCCGTGCCGAAGCGCCTTGT+GGG | + | chr4.1:20467743-20467762 | None:intergenic | 70.0% |
| ! | CCGTGCCGAAGCGCCTTGTG+GGG | + | chr4.1:20467742-20467761 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 20467651 | 20470230 | 20467651 | ID=MS.gene028526 |
| chr4.1 | mRNA | 20467651 | 20470230 | 20467651 | ID=MS.gene028526.t1;Parent=MS.gene028526 |
| chr4.1 | exon | 20470120 | 20470230 | 20470120 | ID=MS.gene028526.t1.exon1;Parent=MS.gene028526.t1 |
| chr4.1 | CDS | 20470120 | 20470230 | 20470120 | ID=cds.MS.gene028526.t1;Parent=MS.gene028526.t1 |
| chr4.1 | exon | 20469863 | 20469937 | 20469863 | ID=MS.gene028526.t1.exon2;Parent=MS.gene028526.t1 |
| chr4.1 | CDS | 20469863 | 20469937 | 20469863 | ID=cds.MS.gene028526.t1;Parent=MS.gene028526.t1 |
| chr4.1 | exon | 20469314 | 20469370 | 20469314 | ID=MS.gene028526.t1.exon3;Parent=MS.gene028526.t1 |
| chr4.1 | CDS | 20469314 | 20469370 | 20469314 | ID=cds.MS.gene028526.t1;Parent=MS.gene028526.t1 |
| chr4.1 | exon | 20469028 | 20469191 | 20469028 | ID=MS.gene028526.t1.exon4;Parent=MS.gene028526.t1 |
| chr4.1 | CDS | 20469028 | 20469191 | 20469028 | ID=cds.MS.gene028526.t1;Parent=MS.gene028526.t1 |
| chr4.1 | exon | 20468730 | 20468864 | 20468730 | ID=MS.gene028526.t1.exon5;Parent=MS.gene028526.t1 |
| chr4.1 | CDS | 20468730 | 20468864 | 20468730 | ID=cds.MS.gene028526.t1;Parent=MS.gene028526.t1 |
| chr4.1 | exon | 20468362 | 20468464 | 20468362 | ID=MS.gene028526.t1.exon6;Parent=MS.gene028526.t1 |
| chr4.1 | CDS | 20468362 | 20468464 | 20468362 | ID=cds.MS.gene028526.t1;Parent=MS.gene028526.t1 |
| chr4.1 | exon | 20468106 | 20468205 | 20468106 | ID=MS.gene028526.t1.exon7;Parent=MS.gene028526.t1 |
| chr4.1 | CDS | 20468106 | 20468205 | 20468106 | ID=cds.MS.gene028526.t1;Parent=MS.gene028526.t1 |
| chr4.1 | exon | 20467651 | 20467859 | 20467651 | ID=MS.gene028526.t1.exon8;Parent=MS.gene028526.t1 |
| chr4.1 | CDS | 20467651 | 20467859 | 20467651 | ID=cds.MS.gene028526.t1;Parent=MS.gene028526.t1 |
| Gene Sequence |
| Protein sequence |
