AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene053078

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053078.t1 MTR_6g004520 97.167 353 9 1 8 360 1 352 0.0 707
MS.gene053078.t1 MTR_6g004520 96.736 337 10 1 24 360 28 363 0.0 674
MS.gene053078.t1 MTR_6g004520 97.377 305 8 0 56 360 1 305 0.0 617
MS.gene053078.t1 MTR_2g036810 59.866 299 115 4 65 358 19 317 3.40e-126 365
MS.gene053078.t1 MTR_4g005740 58.054 298 120 4 65 357 15 312 7.90e-122 354
MS.gene053078.t1 MTR_7g116910 54.949 293 128 3 62 350 18 310 1.17e-114 336
MS.gene053078.t1 MTR_4g092780 54.608 293 129 3 62 350 18 310 1.23e-112 331
MS.gene053078.t1 MTR_5g009670 53.103 290 133 3 58 344 15 304 1.50e-110 325
MS.gene053078.t1 MTR_5g009670 52.361 233 108 3 58 287 15 247 2.10e-84 256
MS.gene053078.t1 MTR_5g020640 30.662 287 181 7 56 339 39 310 8.62e-33 124
MS.gene053078.t1 MTR_5g020640 34.783 184 104 5 56 232 39 213 1.91e-22 95.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053078.t1 AT5G14500 68.750 304 94 1 56 358 1 304 9.16e-156 440
MS.gene053078.t1 AT3G01590 67.763 304 97 1 56 358 1 304 1.40e-153 434
MS.gene053078.t1 AT3G01590 67.763 304 97 1 56 358 1 304 1.40e-153 434
MS.gene053078.t1 AT5G14500 63.526 329 94 2 56 358 1 329 2.79e-149 424
MS.gene053078.t1 AT5G57330 59.396 298 114 5 65 356 15 311 7.56e-122 354
MS.gene053078.t1 AT3G61610 53.041 296 135 3 60 351 10 305 1.73e-110 325
MS.gene053078.t1 AT3G61610 53.041 296 135 3 60 351 16 311 1.98e-110 325
MS.gene053078.t1 AT4G23730 52.055 292 135 3 58 344 15 306 5.63e-105 311
MS.gene053078.t1 AT4G23730 51.007 298 135 4 58 344 15 312 1.85e-102 305
MS.gene053078.t1 AT4G23730 53.903 269 119 3 81 344 3 271 4.09e-99 295
MS.gene053078.t1 AT4G25900 47.872 282 141 4 65 344 38 315 7.93e-90 273
MS.gene053078.t1 AT5G66530 30.796 289 174 9 58 339 8 277 1.68e-32 123
MS.gene053078.t1 AT5G66530 30.526 285 180 8 58 339 36 305 3.24e-32 123
MS.gene053078.t1 AT5G66530 30.526 285 180 8 58 339 36 305 3.24e-32 123
MS.gene053078.t1 AT5G66530 30.526 285 180 8 58 339 36 305 3.24e-32 123

Find 70 sgRNAs with CRISPR-Local

Find 134 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCCTCGTCGAGTTCTTTA+TGG 0.207407 6.2:-557989 MS.gene053078:CDS
TTCAAAGGCATCTGTATAAT+TGG 0.207577 6.2:+560521 None:intergenic
TTTCTACTAAACAGGCTAAA+TGG 0.236756 6.2:-559640 MS.gene053078:intron
GGCCAAAGTTCTACCTGATT+TGG 0.254754 6.2:-558149 MS.gene053078:CDS
TGGTTTCAGGTGCTTCTATA+TGG 0.300749 6.2:-559845 MS.gene053078:intron
TCACATGGCTTCAAGATAAT+AGG 0.304789 6.2:+558073 None:intergenic
AGTGAAAATGCAAAAGAAAA+TGG 0.307262 6.2:+558689 None:intergenic
GCTGATGCAATTACATTTGA+TGG 0.309473 6.2:-558470 MS.gene053078:CDS
ATGGAATCCATGGAATAAAA+AGG 0.317111 6.2:-558170 MS.gene053078:CDS
ATGGAGGGCATATTGTTTCT+TGG 0.327788 6.2:-559826 MS.gene053078:CDS
TATCTGGAAGTGAATTCTTC+TGG 0.338427 6.2:+558296 None:intergenic
AACTAATAGTAACCTGTATC+TGG 0.360667 6.2:+558280 None:intergenic
ATGAAATTGAGAACATTGTT+TGG 0.367606 6.2:-560644 MS.gene053078:CDS
CTTTCACTCTTCTCCAATCC+AGG 0.376719 6.2:+560600 None:intergenic
GCCAAAGTTCTACCTGATTT+GGG 0.381734 6.2:-558148 MS.gene053078:CDS
ATTTGTCTGTATCAGATATC+AGG 0.393837 6.2:-558658 MS.gene053078:intron
ACAGATGAATGATTGTCTAT+TGG 0.398461 6.2:+558964 None:intergenic
AAGCTATTGCAGTGGACAAT+TGG 0.406866 6.2:-558011 MS.gene053078:CDS
ATATTATGTTGATGTTGTTA+TGG 0.408797 6.2:-560679 None:intergenic
AAGAATTCACTTCCAGATAC+AGG 0.417082 6.2:-558292 MS.gene053078:intron
TAATCATCAACTCCCAAATC+AGG 0.419942 6.2:+558136 None:intergenic
TGAGTAATTCAAGAGCATTA+AGG 0.428845 6.2:-560565 MS.gene053078:CDS
GCTCTTGAATTACTCACAAA+TGG 0.432943 6.2:+560572 None:intergenic
AATGTATTTCAAGACAAAGA+TGG 0.433363 6.2:-560500 MS.gene053078:CDS
GGATCAGTCAATACAATCCT+TGG 0.445366 6.2:+560473 None:intergenic
AAGAAGCAGGATGTGGTCAT+TGG 0.450123 6.2:-559010 MS.gene053078:CDS
GATTTGATATTAAAGTCAAC+AGG 0.453233 6.2:-558940 MS.gene053078:CDS
ACCTCAGCTGATGAACCATT+TGG 0.455672 6.2:+560452 None:intergenic
TTGTCTTGAAATACATTCAA+AGG 0.463676 6.2:+560506 None:intergenic
GTTGATGTTGTTATGGTGGA+TGG 0.474269 6.2:-560672 MS.gene053078:CDS
TTATCAGTGTTTCTGACTCT+AGG 0.478385 6.2:+558716 None:intergenic
GTGATGAGAGTGCAGTTGTA+TGG 0.481151 6.2:-558189 MS.gene053078:intron
ATTGGTTGCAGAACCTGGAT+TGG 0.488869 6.2:-560613 MS.gene053078:CDS
GTGTTGCAGTTTGGTGATGT+TGG 0.494871 6.2:-559057 MS.gene053078:intron
TCTTGAAGCCATGTGAAGAA+TGG 0.498380 6.2:-558066 MS.gene053078:CDS
TGAAGTGCGTATTGAGGGAC+TGG 0.503808 6.2:-558546 MS.gene053078:CDS
TTCAGGTGCTTCTATATGGA+GGG 0.504410 6.2:-559841 MS.gene053078:intron
GATGAATGATTGTCTATTGG+AGG 0.517054 6.2:+558967 None:intergenic
GTATATCAGCTTGCTTTGCA+CGG 0.520980 6.2:-559592 MS.gene053078:CDS
TGCAATTACATTTGATGGAG+AGG 0.525933 6.2:-558465 MS.gene053078:intron
TAGCCCTTCCATTCTTCACA+TGG 0.529103 6.2:+558058 None:intergenic
TGCAGTGAAGTGCGTATTGA+GGG 0.534124 6.2:-558551 MS.gene053078:intron
ATTGTATTGACTGATCCAAA+TGG 0.534205 6.2:-560467 MS.gene053078:CDS
TCCCAAATCAGGTAGAACTT+TGG 0.535834 6.2:+558147 None:intergenic
GTGCAGTTGTATGGAATCCA+TGG 0.540295 6.2:-558180 MS.gene053078:intron
TTGTTTCTTGGAAGAATCAA+AGG 0.540471 6.2:-559814 MS.gene053078:CDS
TCTATTGGAGGTAGTGGTGA+AGG 0.541685 6.2:+558979 None:intergenic
TTATGTTGATGTTGTTATGG+TGG 0.541988 6.2:-560676 MS.gene053078:CDS
TAGATCAAGATTCACTGAGC+AGG 0.544743 6.2:-558492 MS.gene053078:CDS
CTTCGCATGTCTCTAAGTGC+TGG 0.547254 6.2:-558755 MS.gene053078:CDS
TGATTGTCTATTGGAGGTAG+TGG 0.547520 6.2:+558973 None:intergenic
TATATCAGCTTGCTTTGCAC+GGG 0.548498 6.2:-559591 MS.gene053078:intron
CACAAGGAATGACAAGAAGC+AGG 0.553963 6.2:-559023 MS.gene053078:CDS
GAAGCCATGTGAAGAATGGA+AGG 0.558681 6.2:-558062 MS.gene053078:CDS
CTATTGGAGGTAGTGGTGAA+GGG 0.565619 6.2:+558980 None:intergenic
GAATGACAAGAAGCAGGATG+TGG 0.566145 6.2:-559017 MS.gene053078:CDS
ACATATGATACATACCTTCG+CGG 0.567462 6.2:+558901 None:intergenic
TTTCAGGTGCTTCTATATGG+AGG 0.583536 6.2:-559842 MS.gene053078:intron
TTGACTTAAAGACGCCGCGA+AGG 0.585387 6.2:-558915 MS.gene053078:intron
GTGCAGTGAAGTGCGTATTG+AGG 0.591729 6.2:-558552 MS.gene053078:intron
AAGACAAAGATGGATTGCCA+AGG 0.592129 6.2:-560490 MS.gene053078:CDS
TTCTTGGAAGAATCAAAGGA+AGG 0.617206 6.2:-559810 MS.gene053078:CDS
TCCAAATGGTTCATCAGCTG+AGG 0.630236 6.2:-560453 MS.gene053078:intron
AATAGACAATCATTCATCTG+TGG 0.635597 6.2:-558962 MS.gene053078:CDS
GTTTCATCAAGCTATTGCAG+TGG 0.637223 6.2:-558019 MS.gene053078:CDS
AAACAACATAAAGCAATCAG+AGG 0.644716 6.2:-559617 MS.gene053078:CDS
CAACATAAAGCAATCAGAGG+AGG 0.656588 6.2:-559614 MS.gene053078:CDS
AAGCCATGTGAAGAATGGAA+GGG 0.663507 6.2:-558061 MS.gene053078:CDS
GTTGGTTCACTTGAGACACA+AGG 0.687208 6.2:-559039 MS.gene053078:CDS
AAACCATAAAGAACTCGACG+AGG 0.748460 6.2:+557986 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCTATCATCAAATATTATT+TGG - chr6.2:558709-558728 MS.gene053078:CDS 15.0%
!!! TTTGACTTAAATTTATCTTT+TGG + chr6.2:558391-558410 None:intergenic 15.0%
!! AAAGATTATTATTCAAGGTA+TGG + chr6.2:558608-558627 None:intergenic 20.0%
!! ACAAAAAATACTATCATGTT+GGG + chr6.2:558268-558287 None:intergenic 20.0%
!! ACAAGTTAGTCAAAATTATA+AGG + chr6.2:558686-558705 None:intergenic 20.0%
!! AGTCAAAAGATTATTATTCA+AGG + chr6.2:558613-558632 None:intergenic 20.0%
!! CTAGTAATAATTTGAGAAAA+TGG - chr6.2:559240-559259 MS.gene053078:intron 20.0%
!! TAGTTCTCTAATTATTGTTT+CGG - chr6.2:560248-560267 MS.gene053078:intron 20.0%
!! TATAAATAACCAAAATGCTA+AGG + chr6.2:560056-560075 None:intergenic 20.0%
!! TTAAGTGAAATAGAAATAGA+AGG + chr6.2:559826-559845 None:intergenic 20.0%
!!! AAAACATTCTTGCTTTATTT+TGG - chr6.2:558906-558925 MS.gene053078:intron 20.0%
!!! AATAAAGCTTTTGAAACATA+TGG - chr6.2:558788-558807 MS.gene053078:intron 20.0%
!!! GATATATACGAAGTAATTTT+AGG - chr6.2:559431-559450 MS.gene053078:intron 20.0%
!!! TTGTCTAAGTTTTAAAATGA+TGG - chr6.2:558742-558761 MS.gene053078:CDS 20.0%
! AATGTATTTCAAGACAAAGA+TGG - chr6.2:558153-558172 MS.gene053078:CDS 25.0%
! AGCACTTAATGTAAATTATG+GGG - chr6.2:558988-559007 MS.gene053078:CDS 25.0%
! AGTGAAAATGCAAAAGAAAA+TGG + chr6.2:559967-559986 None:intergenic 25.0%
! AGTGATCTTAATGGAAAAAT+GGG - chr6.2:558238-558257 MS.gene053078:intron 25.0%
! ATACAGGTTACTATTAGTTA+GGG - chr6.2:560377-560396 MS.gene053078:intron 25.0%
! ATGAAATTGAGAACATTGTT+TGG - chr6.2:558009-558028 MS.gene053078:CDS 25.0%
! CACAAAAAATACTATCATGT+TGG + chr6.2:558269-558288 None:intergenic 25.0%
! CTATTGATGTTACATGAAAT+TGG - chr6.2:559352-559371 MS.gene053078:intron 25.0%
! GAGCACTTAATGTAAATTAT+GGG - chr6.2:558987-559006 MS.gene053078:CDS 25.0%
! GATTTGATATTAAAGTCAAC+AGG - chr6.2:559713-559732 MS.gene053078:intron 25.0%
! GTTAGTCAAAATTATAAGGA+AGG + chr6.2:558682-558701 None:intergenic 25.0%
! TAGTGATCTTAATGGAAAAA+TGG - chr6.2:558237-558256 MS.gene053078:intron 25.0%
! TCATCAAATATTATTTGGAC+CGG - chr6.2:558714-558733 MS.gene053078:CDS 25.0%
! TGAGCACTTAATGTAAATTA+TGG - chr6.2:558986-559005 MS.gene053078:CDS 25.0%
! TTCTTCACATTCACAATATA+TGG - chr6.2:559093-559112 MS.gene053078:intron 25.0%
! TTGTCTTGAAATACATTCAA+AGG + chr6.2:558150-558169 None:intergenic 25.0%
!! TCTATGATGGCAATTTTATT+TGG + chr6.2:560310-560329 None:intergenic 25.0%
!! TTTCTTTTCATGATCTATGA+TGG + chr6.2:560323-560342 None:intergenic 25.0%
!!! CAAGTAAAGTTAGTTTTAAC+TGG - chr6.2:559152-559171 MS.gene053078:intron 25.0%
!!! CATTGTTTGGTTTTTTTGAT+TGG - chr6.2:558022-558041 MS.gene053078:CDS 25.0%
!!! CTATGATGGCAATTTTATTT+GGG + chr6.2:560309-560328 None:intergenic 25.0%
!!! GTTCTTTTGTAAGTTGAAAT+TGG + chr6.2:559477-559496 None:intergenic 25.0%
!!! TTCAGAAATTTGTGTTACTT+TGG - chr6.2:558581-558600 MS.gene053078:intron 25.0%
AAACAACATAAAGCAATCAG+AGG - chr6.2:559036-559055 MS.gene053078:CDS 30.0%
AAATATTATTTGGACCGGTA+TGG - chr6.2:558719-558738 MS.gene053078:CDS 30.0%
AACTAATAGTAACCTGTATC+TGG + chr6.2:560376-560395 None:intergenic 30.0%
AATAGACAATCATTCATCTG+TGG - chr6.2:559691-559710 MS.gene053078:intron 30.0%
ACAGATGAATGATTGTCTAT+TGG + chr6.2:559692-559711 None:intergenic 30.0%
ATGGAATCCATGGAATAAAA+AGG - chr6.2:560483-560502 MS.gene053078:CDS 30.0%
ATTTGTCTGTATCAGATATC+AGG - chr6.2:559995-560014 MS.gene053078:intron 30.0%
GATACAGGTTACTATTAGTT+AGG - chr6.2:560376-560395 MS.gene053078:intron 30.0%
GTATAGACACTTTATGTTGA+AGG - chr6.2:559776-559795 MS.gene053078:intron 30.0%
TAAAACTTAGACAACCATAC+CGG + chr6.2:558736-558755 None:intergenic 30.0%
TAGTTGAATATCAGCAAGTT+TGG + chr6.2:559569-559588 None:intergenic 30.0%
TGTTAGTGTAAATGTTTGTC+CGG + chr6.2:559212-559231 None:intergenic 30.0%
TTGTGTAGCTCAACATAAAT+AGG - chr6.2:558519-558538 MS.gene053078:CDS 30.0%
TTTCTACTAAACAGGCTAAA+TGG - chr6.2:559013-559032 MS.gene053078:CDS 30.0%
! TCTTTTGCTAGTGATCTTAA+TGG - chr6.2:558229-558248 MS.gene053078:intron 30.0%
! TTGTTTCTTGGAAGAATCAA+AGG - chr6.2:558839-558858 MS.gene053078:intron 30.0%
!! ATTGTATTGACTGATCCAAA+TGG - chr6.2:558186-558205 MS.gene053078:intron 30.0%
!! CATCTGAGTTTTTCAATTCT+AGG + chr6.2:559499-559518 None:intergenic 30.0%
!! TGAGTAATTCAAGAGCATTA+AGG - chr6.2:558088-558107 MS.gene053078:CDS 30.0%
!! TTCAAAGGCATCTGTATAAT+TGG + chr6.2:558135-558154 None:intergenic 30.0%
!!! CTTTTGAAACATATGGTTTC+AGG - chr6.2:558795-558814 MS.gene053078:intron 30.0%
AAGAATTCACTTCCAGATAC+AGG - chr6.2:560361-560380 MS.gene053078:intron 35.0%
ACATATGATACATACCTTCG+CGG + chr6.2:559755-559774 None:intergenic 35.0%
ATTACATTTGATGGAGAGGT+AGG - chr6.2:560192-560211 MS.gene053078:intron 35.0%
CATTAAGTGCTCACAAAAGA+TGG + chr6.2:558979-558998 None:intergenic 35.0%
CATTCTATGCTTACTTGCTT+TGG - chr6.2:558645-558664 MS.gene053078:intron 35.0%
GATGAATGATTGTCTATTGG+AGG + chr6.2:559689-559708 None:intergenic 35.0%
GCTCTTGAATTACTCACAAA+TGG + chr6.2:558084-558103 None:intergenic 35.0%
GCTGATGCAATTACATTTGA+TGG - chr6.2:560183-560202 MS.gene053078:intron 35.0%
GTTTATATTGAAGACGTGTC+TGG + chr6.2:559333-559352 None:intergenic 35.0%
TAATCATCAACTCCCAAATC+AGG + chr6.2:560520-560539 None:intergenic 35.0%
TACAACTTTGTGTTGCAGTT+TGG - chr6.2:559587-559606 MS.gene053078:intron 35.0%
TATCTGGAAGTGAATTCTTC+TGG + chr6.2:560360-560379 None:intergenic 35.0%
TCACATGGCTTCAAGATAAT+AGG + chr6.2:560583-560602 None:intergenic 35.0%
TGCAATTACATTTGATGGAG+AGG - chr6.2:560188-560207 MS.gene053078:intron 35.0%
TTCTTGGAAGAATCAAAGGA+AGG - chr6.2:558843-558862 MS.gene053078:intron 35.0%
! ATCATCATGCCTTAGCATTT+TGG - chr6.2:560044-560063 MS.gene053078:intron 35.0%
! ATGGGGATTTTCTACTAAAC+AGG - chr6.2:559005-559024 MS.gene053078:CDS 35.0%
! TTATCAGTGTTTCTGACTCT+AGG + chr6.2:559940-559959 None:intergenic 35.0%
!! ACTTTGGCCTTTTTATTCCA+TGG + chr6.2:560493-560512 None:intergenic 35.0%
!!! ACTACTTTTTATGAGCAGCA+AGG - chr6.2:558870-558889 MS.gene053078:intron 35.0%
AAACCATAAAGAACTCGACG+AGG + chr6.2:560670-560689 None:intergenic 40.0%
AAGCCATGTGAAGAATGGAA+GGG - chr6.2:560592-560611 MS.gene053078:CDS 40.0%
AAGCTATTGCAGTGGACAAT+TGG - chr6.2:560642-560661 MS.gene053078:CDS 40.0%
CAACACTATCACAACACATG+TGG + chr6.2:559283-559302 None:intergenic 40.0%
CAACATAAAGCAATCAGAGG+AGG - chr6.2:559039-559058 MS.gene053078:CDS 40.0%
GAAATAGAAGGCAAACGTGT+CGG + chr6.2:559814-559833 None:intergenic 40.0%
GCCAAAGTTCTACCTGATTT+GGG - chr6.2:560505-560524 MS.gene053078:CDS 40.0%
GGATCAGTCAATACAATCCT+TGG + chr6.2:558183-558202 None:intergenic 40.0%
GTTTCATCAAGCTATTGCAG+TGG - chr6.2:560634-560653 MS.gene053078:CDS 40.0%
GTTTCGGTTTACCTTGTAGA+CGG - chr6.2:560264-560283 MS.gene053078:intron 40.0%
TAGATCAAGATTCACTGAGC+AGG - chr6.2:560161-560180 MS.gene053078:intron 40.0%
TCCCAAATCAGGTAGAACTT+TGG + chr6.2:560509-560528 None:intergenic 40.0%
TCTTGAAGCCATGTGAAGAA+TGG - chr6.2:560587-560606 MS.gene053078:CDS 40.0%
TGATTGTCTATTGGAGGTAG+TGG + chr6.2:559683-559702 None:intergenic 40.0%
TTCAGGTGCTTCTATATGGA+GGG - chr6.2:558812-558831 MS.gene053078:intron 40.0%
! ATGGAGGGCATATTGTTTCT+TGG - chr6.2:558827-558846 MS.gene053078:intron 40.0%
! CACATGTGTTGTGATAGTGT+TGG - chr6.2:559281-559300 MS.gene053078:intron 40.0%
! CTTTATGTTGAAGGTGTGTC+TGG - chr6.2:559785-559804 MS.gene053078:CDS 40.0%
! GTATATCAGCTTGCTTTGCA+CGG - chr6.2:559061-559080 MS.gene053078:intron 40.0%
! GTTGATGTTGTTATGGTGGA+TGG - chr6.2:557981-558000 MS.gene053078:CDS 40.0%
! TAACACATCAAGAGCGTGTT+TGG + chr6.2:558491-558510 None:intergenic 40.0%
! TATATCAGCTTGCTTTGCAC+GGG - chr6.2:559062-559081 MS.gene053078:intron 40.0%
! TGGTTTCAGGTGCTTCTATA+TGG - chr6.2:558808-558827 MS.gene053078:intron 40.0%
! TTTCAGGTGCTTCTATATGG+AGG - chr6.2:558811-558830 MS.gene053078:intron 40.0%
!! AAGACAAAGATGGATTGCCA+AGG - chr6.2:558163-558182 MS.gene053078:CDS 40.0%
!! GTTGTGATAGTGTTGGTGTT+GGG - chr6.2:559288-559307 MS.gene053078:intron 40.0%
!! TGTTGTGATAGTGTTGGTGT+TGG - chr6.2:559287-559306 MS.gene053078:intron 40.0%
!! TTGTGATAGTGTTGGTGTTG+GGG - chr6.2:559289-559308 MS.gene053078:intron 40.0%
!! TTTTGATTGGTTGCAGAACC+TGG - chr6.2:558035-558054 MS.gene053078:CDS 40.0%
AAGAAGCAGGATGTGGTCAT+TGG - chr6.2:559643-559662 MS.gene053078:intron 45.0%
AATGGTTCATCAGCTGAGGT+TGG - chr6.2:558204-558223 MS.gene053078:intron 45.0%
ACCTCAGCTGATGAACCATT+TGG + chr6.2:558204-558223 None:intergenic 45.0%
ATTGGTTGCAGAACCTGGAT+TGG - chr6.2:558040-558059 MS.gene053078:CDS 45.0%
CACAAGGAATGACAAGAAGC+AGG - chr6.2:559630-559649 MS.gene053078:intron 45.0%
CTTTCACTCTTCTCCAATCC+AGG + chr6.2:558056-558075 None:intergenic 45.0%
GAAGCCATGTGAAGAATGGA+AGG - chr6.2:560591-560610 MS.gene053078:CDS 45.0%
GAATGACAAGAAGCAGGATG+TGG - chr6.2:559636-559655 MS.gene053078:intron 45.0%
GATCCTCGTCGAGTTCTTTA+TGG - chr6.2:560664-560683 MS.gene053078:CDS 45.0%
GGCCAAAGTTCTACCTGATT+TGG - chr6.2:560504-560523 MS.gene053078:CDS 45.0%
GTATACTCTGTCCGTCTACA+AGG + chr6.2:560278-560297 None:intergenic 45.0%
GTGCAGTTGTATGGAATCCA+TGG - chr6.2:560473-560492 MS.gene053078:CDS 45.0%
TAGCCCTTCCATTCTTCACA+TGG + chr6.2:560598-560617 None:intergenic 45.0%
TCCAAATGGTTCATCAGCTG+AGG - chr6.2:558200-558219 MS.gene053078:intron 45.0%
TGCAGTGAAGTGCGTATTGA+GGG - chr6.2:560102-560121 MS.gene053078:intron 45.0%
! CTATTGGAGGTAGTGGTGAA+GGG + chr6.2:559676-559695 None:intergenic 45.0%
! GTGATGAGAGTGCAGTTGTA+TGG - chr6.2:560464-560483 MS.gene053078:CDS 45.0%
! GTTGGTTCACTTGAGACACA+AGG - chr6.2:559614-559633 MS.gene053078:CDS 45.0%
! TCTATTGGAGGTAGTGGTGA+AGG + chr6.2:559677-559696 None:intergenic 45.0%
!! GTGTTGCAGTTTGGTGATGT+TGG - chr6.2:559596-559615 MS.gene053078:CDS 45.0%
AATGAAACACCGACAGACGC+CGG - chr6.2:559190-559209 MS.gene053078:intron 50.0%
AATGTTTGTCCGGCGTCTGT+CGG + chr6.2:559202-559221 None:intergenic 50.0%
CTTCGCATGTCTCTAAGTGC+TGG - chr6.2:559898-559917 MS.gene053078:intron 50.0%
GTGCAGTGAAGTGCGTATTG+AGG - chr6.2:560101-560120 MS.gene053078:intron 50.0%
TGAAGTGCGTATTGAGGGAC+TGG - chr6.2:560107-560126 MS.gene053078:intron 50.0%
TGTTGGGGATTGTCACGTGT+CGG - chr6.2:559304-559323 MS.gene053078:intron 50.0%
TTGACTTAAAGACGCCGCGA+AGG - chr6.2:559738-559757 MS.gene053078:intron 50.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 557979 560696 557979 ID=MS.gene053078
chr6.2 mRNA 557979 560696 557979 ID=MS.gene053078.t1;Parent=MS.gene053078
chr6.2 exon 560454 560696 560454 ID=MS.gene053078.t1.exon1;Parent=MS.gene053078.t1
chr6.2 CDS 560454 560696 560454 ID=cds.MS.gene053078.t1;Parent=MS.gene053078.t1
chr6.2 exon 559784 559858 559784 ID=MS.gene053078.t1.exon2;Parent=MS.gene053078.t1
chr6.2 CDS 559784 559858 559784 ID=cds.MS.gene053078.t1;Parent=MS.gene053078.t1
chr6.2 exon 559592 559648 559592 ID=MS.gene053078.t1.exon3;Parent=MS.gene053078.t1
chr6.2 CDS 559592 559648 559592 ID=cds.MS.gene053078.t1;Parent=MS.gene053078.t1
chr6.2 exon 558916 559070 558916 ID=MS.gene053078.t1.exon4;Parent=MS.gene053078.t1
chr6.2 CDS 558916 559070 558916 ID=cds.MS.gene053078.t1;Parent=MS.gene053078.t1
chr6.2 exon 558659 558790 558659 ID=MS.gene053078.t1.exon5;Parent=MS.gene053078.t1
chr6.2 CDS 558659 558790 558659 ID=cds.MS.gene053078.t1;Parent=MS.gene053078.t1
chr6.2 exon 558466 558568 558466 ID=MS.gene053078.t1.exon6;Parent=MS.gene053078.t1
chr6.2 CDS 558466 558568 558466 ID=cds.MS.gene053078.t1;Parent=MS.gene053078.t1
chr6.2 exon 558293 558392 558293 ID=MS.gene053078.t1.exon7;Parent=MS.gene053078.t1
chr6.2 CDS 558293 558392 558293 ID=cds.MS.gene053078.t1;Parent=MS.gene053078.t1
chr6.2 exon 557979 558196 557979 ID=MS.gene053078.t1.exon8;Parent=MS.gene053078.t1
chr6.2 CDS 557979 558196 557979 ID=cds.MS.gene053078.t1;Parent=MS.gene053078.t1
Gene Sequence

>MS.gene053078

ATGTTGATGTTGTTATGGTGGATGGTGAAGATGAAATTGAGAACATTGTTTGGTTTTTTTGATTGGTTGCAGAACCTGGATTGGAGAAGAGTGAAAGTGAAGCCATTTGTGAGTAATTCAAGAGCATTAAGGTTGCAGCAACAGCAGCATCAACCAATTATACAGATGCCTTTGAATGTATTTCAAGACAAAGATGGATTGCCAAGGATTGTATTGACTGATCCAAATGGTTCATCAGCTGAGGTTGGTTTCTTTTGCTAGTGATCTTAATGGAAAAATGGGATTTCCCAACATGATAGTATTTTTTGTGATCATAAAAAATCGAGTCATGTTTGTATAAACAACTTAATTTAACGATTATCGTATAAGTACTTTTGTGATAAGTGTTTATGTATAAACTATTTCTATACCAAAAGATAAATTTAAGTCAAACTATTAGTTATTTCTCTAAATTCACTCAAACAGTCTCAGAAGTGCTTATGTTAGTAGATAAGCTAAGAAAAGTCAATCCAAACACGCTCTTGATGTGTTAATTATTGATTGTGTAGCTCAACATAAATAGGTTGTAGAATATCTATGTTTGCAATAACTTGTTATCATTTTTCAGAAATTTGTGTTACTTTGGACCATACCTTGAATAATAATCTTTTGACTACTCAGAACAAACATTCTATGCTTACTTGCTTTGGTTTGTATTAATCCTTCCTTATAATTTTGACTAACTTGTAAATTCTATCATCAAATATTATTTGGACCGGTATGGTTGTCTAAGTTTTAAAATGATGGTACAGAAGCAACTATGATCTCATAATAAAGCTTTTGAAACATATGGTTTCAGGTGCTTCTATATGGAGGGCATATTGTTTCTTGGAAGAATCAAAGGAAGGAAGAACTACTTTTTATGAGCAGCAAGGTAAAAAAAAAAAAAAAACATTCTTGCTTTATTTTGGCTTTAATTTCTTGTAAGAAAATGCAGATGTTACTTCTATGAATTTGTCCATCTTTTGTGAGCACTTAATGTAAATTATGGGGATTTTCTACTAAACAGGCTAAATGGAAACAACATAAAGCAATCAGAGGAGGTATATCAGCTTGCTTTGCACGGGTAAGTACTTTCTTCACATTCACAATATATGGTGTGAACTTTGAACATATTTCAATTTTGTCATTGCTCAAGTAAAGTTAGTTTTAACTGGCTTAGTTTAGAATAGAATGAAACACCGACAGACGCCGGACAAACATTTACACTAACACATGAACACTAGTAATAATTTGAGAAAATGGAAAGTAATTGAATCTAACCACATGTGTTGTGATAGTGTTGGTGTTGGGGATTGTCACGTGTCGGAAACCAGACACGTCTTCAATATAAACTATTGATGTTACATGAAATTGGAAGCTTTTCATTTAAAATAAGTTAACAATTCATCACTTTTATAAACAAAAATTATAGATATATACGAAGTAATTTTAGGAAAAAATTAATATGTAGAAGCCAATTTCAACTTACAAAAGAACCTAGAATTGAAAAACTCAGATGCTGCAATGTATTTTATTCTAAATAAAAGTGCTTGTTGAGAAATTTTTCCAAACTTGCTGATATTCAACTACAACTTTGTGTTGCAGTTTGGTGATGTTGGTTCACTTGAGACACAAGGAATGACAAGAAGCAGGATGTGGTCATTGGATAGAGACCCTTCACCACTACCTCCAATAGACAATCATTCATCTGTGGATTTGATATTAAAGTCAACAGGAGTTGACTTAAAGACGCCGCGAAGGTATGTATCATATGTAGTATAGACACTTTATGTTGAAGGTGTGTCTGGTGTCCGACACGTTTGCCTTCTATTTCTATTTCACTTAATCATATATATATTTCAATTTGTATGTTCTGTTTATGCAGTTTTGAATTGAGACTTCGCATGTCTCTAAGTGCTGGCAAGCTCATTCTGATTCCTAGAGTCAGAAACACTGATAACAAACCATTTTCTTTTGCATTTTCACTATGCAACTATTTGTCTGTATCAGATATCAGGTATGCACTTCATTTTCTTACTACATGATCATCATGCCTTAGCATTTTGGTTATTTATATGTCTTTAAGAGTGTTTCAACGAATGTGCAGTGAAGTGCGTATTGAGGGACTGGAAACACTTGATTATGTTGATAATTTGATGAATAGATCAAGATTCACTGAGCAGGCTGATGCAATTACATTTGATGGAGAGGTAGGTATCATAAAGCATCACATTCTTTCATAGATACATAGTTCTCTAATTATTGTTTCGGTTTACCTTGTAGACGGACAGAGTATACTTGCATAGCCCAAATAAAATTGCCATCATAGATCATGAAAAGAAAAGAACTTTTGTACTCCAGAAGAATTCACTTCCAGATACAGGTTACTATTAGTTAGGGAATCACATTTTACATGTTTTCTGTTTCATACATTTGATGTATTTGCATGACTTTATATCGATTTGTGATGAGAGTGCAGTTGTATGGAATCCATGGAATAAAAAGGCCAAAGTTCTACCTGATTTGGGAGTTGATGATTACAAAATGATGTTATGTGTGAATTCAGCAGCTATTGATACTCCTATTATCTTGAAGCCATGTGAAGAATGGAAGGGCTATCAAGAAATCTCTACTGTTTCATCAAGCTATTGCAGTGGACAATTGGATCCTCGTCGAGTTCTTTATGGTTTTCAGTGA
Protein sequence

>MS.gene053078.t1

MLMLLWWMVKMKLRTLFGFFDWLQNLDWRRVKVKPFVSNSRALRLQQQQHQPIIQMPLNVFQDKDGLPRIVLTDPNGSSAEVLLYGGHIVSWKNQRKEELLFMSSKAKWKQHKAIRGGISACFARFGDVGSLETQGMTRSRMWSLDRDPSPLPPIDNHSSVDLILKSTGVDLKTPRSFELRLRMSLSAGKLILIPRVRNTDNKPFSFAFSLCNYLSVSDISEVRIEGLETLDYVDNLMNRSRFTEQADAITFDGETDRVYLHSPNKIAIIDHEKKRTFVLQKNSLPDTVVWNPWNKKAKVLPDLGVDDYKMMLCVNSAAIDTPIILKPCEEWKGYQEISTVSSSYCSGQLDPRRVLYGFQ