Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024663.t1 | XP_003611029.1 | 98.7 | 304 | 4 | 0 | 1 | 304 | 1 | 304 | 1.80E-174 | 621.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024663.t1 | Q40784 | 66.0 | 291 | 97 | 1 | 16 | 304 | 25 | 315 | 1.0e-117 | 424.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024663.t1 | G7KAP1 | 98.7 | 304 | 4 | 0 | 1 | 304 | 1 | 304 | 1.3e-174 | 621.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene024472 | MS.gene024663 | PPI |
| MS.gene053078 | MS.gene024663 | PPI |
| MS.gene40102 | MS.gene024663 | PPI |
| MS.gene22823 | MS.gene024663 | PPI |
| MS.gene57695 | MS.gene024663 | PPI |
| MS.gene028526 | MS.gene024663 | PPI |
| MS.gene032655 | MS.gene024663 | PPI |
| MS.gene73340 | MS.gene024663 | PPI |
| MS.gene024663 | MS.gene90270 | PPI |
| MS.gene024663 | MS.gene053078 | PPI |
| MS.gene060400 | MS.gene024663 | PPI |
| MS.gene024663 | MS.gene050620 | PPI |
| MS.gene025937 | MS.gene024663 | PPI |
| MS.gene053627 | MS.gene024663 | PPI |
| MS.gene82807 | MS.gene024663 | PPI |
| MS.gene037013 | MS.gene024663 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024663.t1 | MTR_5g009670 | 98.684 | 304 | 4 | 0 | 1 | 304 | 1 | 304 | 0.0 | 620 |
| MS.gene024663.t1 | MTR_5g009670 | 99.194 | 248 | 2 | 0 | 1 | 248 | 1 | 248 | 0.0 | 511 |
| MS.gene024663.t1 | MTR_4g092780 | 71.475 | 305 | 85 | 2 | 1 | 304 | 1 | 304 | 4.93e-164 | 459 |
| MS.gene024663.t1 | MTR_7g116910 | 69.508 | 305 | 91 | 2 | 1 | 304 | 1 | 304 | 7.00e-164 | 458 |
| MS.gene024663.t1 | MTR_2g036810 | 66.897 | 290 | 94 | 1 | 17 | 304 | 14 | 303 | 2.10e-151 | 427 |
| MS.gene024663.t1 | MTR_4g005740 | 66.316 | 285 | 94 | 1 | 22 | 304 | 15 | 299 | 1.44e-144 | 409 |
| MS.gene024663.t1 | MTR_6g004520 | 54.138 | 290 | 130 | 3 | 15 | 304 | 3 | 289 | 4.73e-115 | 334 |
| MS.gene024663.t1 | MTR_6g004520 | 54.138 | 290 | 130 | 3 | 15 | 304 | 61 | 347 | 1.25e-114 | 335 |
| MS.gene024663.t1 | MTR_6g004520 | 54.138 | 290 | 130 | 3 | 15 | 304 | 50 | 336 | 1.89e-114 | 334 |
| MS.gene024663.t1 | MTR_5g020640 | 33.218 | 289 | 174 | 7 | 15 | 301 | 41 | 312 | 3.65e-43 | 150 |
| MS.gene024663.t1 | MTR_5g020640 | 36.464 | 181 | 107 | 4 | 15 | 195 | 41 | 213 | 5.37e-30 | 114 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024663.t1 | AT4G23730 | 69.608 | 306 | 91 | 2 | 1 | 304 | 1 | 306 | 7.34e-165 | 460 |
| MS.gene024663.t1 | AT3G61610 | 74.138 | 290 | 74 | 1 | 16 | 304 | 15 | 304 | 1.46e-163 | 457 |
| MS.gene024663.t1 | AT3G61610 | 74.138 | 290 | 74 | 1 | 16 | 304 | 9 | 298 | 1.55e-163 | 457 |
| MS.gene024663.t1 | AT4G23730 | 68.269 | 312 | 91 | 3 | 1 | 304 | 1 | 312 | 2.38e-162 | 454 |
| MS.gene024663.t1 | AT4G23730 | 73.881 | 268 | 68 | 2 | 39 | 304 | 4 | 271 | 8.00e-154 | 431 |
| MS.gene024663.t1 | AT5G57330 | 67.354 | 291 | 93 | 1 | 16 | 304 | 9 | 299 | 5.79e-153 | 431 |
| MS.gene024663.t1 | AT5G14500 | 57.241 | 290 | 122 | 2 | 15 | 304 | 3 | 290 | 9.40e-129 | 369 |
| MS.gene024663.t1 | AT3G01590 | 59.649 | 285 | 113 | 2 | 20 | 304 | 8 | 290 | 1.08e-128 | 369 |
| MS.gene024663.t1 | AT3G01590 | 59.649 | 285 | 113 | 2 | 20 | 304 | 8 | 290 | 1.08e-128 | 369 |
| MS.gene024663.t1 | AT5G14500 | 52.698 | 315 | 122 | 3 | 15 | 304 | 3 | 315 | 1.73e-122 | 354 |
| MS.gene024663.t1 | AT4G25900 | 51.042 | 288 | 136 | 2 | 16 | 303 | 32 | 314 | 8.47e-113 | 329 |
| MS.gene024663.t1 | AT5G66530 | 34.021 | 291 | 171 | 9 | 13 | 300 | 6 | 278 | 1.47e-44 | 153 |
| MS.gene024663.t1 | AT5G66530 | 34.021 | 291 | 171 | 9 | 13 | 300 | 34 | 306 | 3.71e-44 | 153 |
| MS.gene024663.t1 | AT5G66530 | 34.021 | 291 | 171 | 9 | 13 | 300 | 34 | 306 | 3.71e-44 | 153 |
| MS.gene024663.t1 | AT5G66530 | 34.021 | 291 | 171 | 9 | 13 | 300 | 34 | 306 | 3.71e-44 | 153 |
Find 74 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAAGTCAATAGTGGATTT+TGG | 0.129984 | 5.1:-3265120 | MS.gene024663:CDS |
| ATTCCTCCTCGTACTGGTTT+TGG | 0.222742 | 5.1:+3266509 | None:intergenic |
| GACAGTGAAGTGAGGGTAGA+AGG | 0.250795 | 5.1:-3265603 | MS.gene024663:intron |
| GATTTGCAAGGAATAAGATA+TGG | 0.355587 | 5.1:-3266339 | MS.gene024663:CDS |
| TTACACATTGAATAGTTGTT+TGG | 0.364398 | 5.1:-3265161 | MS.gene024663:intron |
| ACGGAGGGCAAGTTCTTTCA+TGG | 0.380303 | 5.1:-3266819 | MS.gene024663:CDS |
| AAGGCTTGCCATTGACATTC+CGG | 0.382320 | 5.1:+3265850 | None:intergenic |
| TACGGACCTGATATCTGATA+TGG | 0.394110 | 5.1:+3265794 | None:intergenic |
| TGAAGCGTTCCTTCTGGTAT+AGG | 0.403091 | 5.1:+3265553 | None:intergenic |
| CTGAAGACGATATGAAGATA+TGG | 0.407969 | 5.1:-3266240 | MS.gene024663:CDS |
| GTTCTGTGAAGCGTTCCTTC+TGG | 0.411774 | 5.1:+3265547 | None:intergenic |
| TTATCTCGATTCTAGCAGTA+TGG | 0.412644 | 5.1:-3265376 | MS.gene024663:CDS |
| TGAAGTGAGGGTAGAAGGGT+TGG | 0.418375 | 5.1:-3265598 | MS.gene024663:CDS |
| ATTACCTGTGGAAAACAGAT+TGG | 0.421320 | 5.1:+3266485 | None:intergenic |
| GAAAGACACTTACCAACATC+TGG | 0.431173 | 5.1:+3265297 | None:intergenic |
| CAGCCGGTCCATTCTTCTCC+CGG | 0.431313 | 5.1:+3265030 | None:intergenic |
| ATTTCTCCATATCAGATATC+AGG | 0.439981 | 5.1:-3265800 | MS.gene024663:intron |
| AGAAGAATGGACCGGCTGCT+TGG | 0.443265 | 5.1:-3265025 | MS.gene024663:CDS |
| GTTTCGCCTAAGGGTCTGTT+TGG | 0.445507 | 5.1:-3265907 | MS.gene024663:CDS |
| GAATAGTTGTTTGGAATCCC+TGG | 0.459977 | 5.1:-3265152 | MS.gene024663:intron |
| CCATTTGAATCCGTGGGCAG+TGG | 0.460101 | 5.1:+3266295 | None:intergenic |
| GTTGTTCTTCGAAACGTTCG+AGG | 0.461265 | 5.1:-3266961 | MS.gene024663:CDS |
| AAATCCGATAACCTTAAAAC+CGG | 0.461715 | 5.1:-3265049 | MS.gene024663:CDS |
| CCTTAAAACCGGGAGAAGAA+TGG | 0.474210 | 5.1:-3265038 | MS.gene024663:CDS |
| TTACCTGTGGAAAACAGATT+GGG | 0.476013 | 5.1:+3266486 | None:intergenic |
| ATTGGGATTCCTCCTCGTAC+TGG | 0.478898 | 5.1:+3266503 | None:intergenic |
| AACATCAGTTGAAGTTATCA+AGG | 0.479030 | 5.1:-3267004 | MS.gene024663:CDS |
| GAATCCGTGGGCAGTGGTGG+AGG | 0.481987 | 5.1:+3266301 | None:intergenic |
| TTGAAGTCAAGTCAAGTAGA+AGG | 0.484710 | 5.1:+3264988 | None:intergenic |
| CAGCTTCGAGTTTCGCCTAA+GGG | 0.487911 | 5.1:-3265916 | MS.gene024663:CDS |
| TCAGCTTCGAGTTTCGCCTA+AGG | 0.489943 | 5.1:-3265917 | MS.gene024663:intron |
| ACAGTGAAGTGAGGGTAGAA+GGG | 0.492013 | 5.1:-3265602 | MS.gene024663:intron |
| CCTTCTGGTATAGGTTATCC+AGG | 0.493007 | 5.1:+3265562 | None:intergenic |
| TGCTTTAACATTTGAATCTG+AGG | 0.495159 | 5.1:-3265517 | MS.gene024663:intron |
| GTTATTGTTCACTAGTACCA+AGG | 0.506527 | 5.1:-3266776 | MS.gene024663:intron |
| TGAATATGATATCTCGCATC+CGG | 0.512657 | 5.1:-3265869 | MS.gene024663:CDS |
| ATTTGCAAGGAATAAGATAT+GGG | 0.514716 | 5.1:-3266338 | MS.gene024663:CDS |
| TCTCGCATCCGGAATGTCAA+TGG | 0.518066 | 5.1:-3265858 | MS.gene024663:CDS |
| TTCAGGTTAGCTTGCACGGA+GGG | 0.519016 | 5.1:-3266834 | MS.gene024663:intron |
| TTTGAATCCGTGGGCAGTGG+TGG | 0.520143 | 5.1:+3266298 | None:intergenic |
| AATAGTTGTTTGGAATCCCT+GGG | 0.525696 | 5.1:-3265151 | MS.gene024663:intron |
| CCACTGCCCACGGATTCAAA+TGG | 0.526642 | 5.1:-3266295 | MS.gene024663:CDS |
| CATGTTGCTCTAGTGTTCCA+CGG | 0.532159 | 5.1:+3266362 | None:intergenic |
| TTTCTTCTCATGATCTAGAA+CGG | 0.537918 | 5.1:+3265350 | None:intergenic |
| ATCTTCATATCGTCTTCAGA+TGG | 0.538140 | 5.1:+3266244 | None:intergenic |
| AGGGTCTGTTTGGCAGCAGA+TGG | 0.540406 | 5.1:-3265897 | MS.gene024663:CDS |
| AACAGAAAGCTCCAAGCAGC+CGG | 0.541122 | 5.1:+3265014 | None:intergenic |
| TGCGTGGATGGTGCAGCAGT+TGG | 0.542462 | 5.1:-3265072 | MS.gene024663:CDS |
| GTTGGAGACTCTTGACTACC+TGG | 0.542710 | 5.1:-3265580 | MS.gene024663:CDS |
| AAGCAAATGCTCTGCGTGGA+TGG | 0.557893 | 5.1:-3265084 | MS.gene024663:CDS |
| GAAATATGTATGAAATGCAA+AGG | 0.575295 | 5.1:+3265818 | None:intergenic |
| AAGGAAGGTCTTCCAGATGT+TGG | 0.585878 | 5.1:-3265309 | MS.gene024663:intron |
| CTGCTGCCAAACAGACCCTT+AGG | 0.589405 | 5.1:+3265901 | None:intergenic |
| CGATTATTGACAGTGAAGTG+AGG | 0.590022 | 5.1:-3265611 | MS.gene024663:intron |
| AAATCCTCCACCACTGCCCA+CGG | 0.590093 | 5.1:-3266305 | MS.gene024663:CDS |
| AAGGAACGCTTCACAGAACA+AGG | 0.595906 | 5.1:-3265543 | MS.gene024663:CDS |
| AAACCGGGAGAAGAATGGAC+CGG | 0.597121 | 5.1:-3265033 | MS.gene024663:CDS |
| AATGCAAAGGAGAAACTGAA+AGG | 0.627775 | 5.1:+3265831 | None:intergenic |
| GATTATTGACAGTGAAGTGA+GGG | 0.633522 | 5.1:-3265610 | MS.gene024663:intron |
| ACGAACATTTGTGATACGAA+AGG | 0.635723 | 5.1:-3265328 | MS.gene024663:CDS |
| ATATGAAGATATGGCCACAT+AGG | 0.635993 | 5.1:-3266231 | MS.gene024663:intron |
| CCTGGATAACCTATACCAGA+AGG | 0.640312 | 5.1:-3265562 | MS.gene024663:CDS |
| CGTGGAACACTAGAGCAACA+TGG | 0.643884 | 5.1:-3266361 | MS.gene024663:CDS |
| TAAAGCGTGTCGCACCTATG+TGG | 0.645929 | 5.1:+3266217 | None:intergenic |
| TAGAGCAACATGGATTTGCA+AGG | 0.656362 | 5.1:-3266351 | MS.gene024663:CDS |
| TTTCAGGTTAGCTTGCACGG+AGG | 0.662583 | 5.1:-3266835 | MS.gene024663:intron |
| ACATTTGTGATACGAAAGGA+AGG | 0.663497 | 5.1:-3265324 | MS.gene024663:CDS |
| CGTTCGAGGAGCTTCAGCAA+CGG | 0.664112 | 5.1:-3266947 | MS.gene024663:intron |
| CTTTCATGGAAAACAGAACG+CGG | 0.670837 | 5.1:-3266805 | MS.gene024663:CDS |
| TGCGAGATATCATATTCAGA+CGG | 0.674803 | 5.1:+3265874 | None:intergenic |
| AATCCGATAACCTTAAAACC+GGG | 0.679316 | 5.1:-3265048 | MS.gene024663:CDS |
| GTACAAGCAAATGCTCTGCG+TGG | 0.681422 | 5.1:-3265088 | MS.gene024663:CDS |
| CCTCCAAAACCAGTACGAGG+AGG | 0.735431 | 5.1:-3266512 | MS.gene024663:CDS |
| ACTCCTCCAAAACCAGTACG+AGG | 0.754632 | 5.1:-3266515 | MS.gene024663:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATAAAATTTAAAAACGA+AGG | + | chr5.1:3266360-3266379 | None:intergenic | 10.0% |
| !!! | AAATATACTTGTTATTATAT+AGG | + | chr5.1:3266041-3266060 | None:intergenic | 10.0% |
| !!! | AATTTAACTTGATAAATATA+AGG | + | chr5.1:3266579-3266598 | None:intergenic | 10.0% |
| !! | ATATAGATAGATAGATAATA+AGG | - | chr5.1:3265622-3265641 | MS.gene024663:intron | 15.0% |
| !!! | ACATTTTACAAACAAAATTA+AGG | + | chr5.1:3265456-3265475 | None:intergenic | 15.0% |
| !! | CAAAATCTAAGTACTATAAT+TGG | - | chr5.1:3266790-3266809 | MS.gene024663:CDS | 20.0% |
| !! | CAAACAAAATTAAGGTTAAT+TGG | + | chr5.1:3265448-3265467 | None:intergenic | 20.0% |
| !! | GCTATATATAGAACTATTAA+AGG | - | chr5.1:3265928-3265947 | MS.gene024663:intron | 20.0% |
| !! | TAACTTGATAAATATAAGGA+TGG | + | chr5.1:3266575-3266594 | None:intergenic | 20.0% |
| !! | TATATAGATTTCTGTAATTC+AGG | + | chr5.1:3265607-3265626 | None:intergenic | 20.0% |
| !!! | AGCATTTTACTTATGAATTT+GGG | - | chr5.1:3265872-3265891 | MS.gene024663:CDS | 20.0% |
| !!! | CAAGATCAATTATTTTATCA+AGG | - | chr5.1:3266295-3266314 | MS.gene024663:CDS | 20.0% |
| ! | AATAACTGAGATAAATTGAG+AGG | - | chr5.1:3265906-3265925 | MS.gene024663:CDS | 25.0% |
| ! | AGATAGATAGATAATAAGGT+TGG | - | chr5.1:3265626-3265645 | MS.gene024663:intron | 25.0% |
| ! | ATTCAATGTGTAAATTGACA+TGG | + | chr5.1:3266870-3266889 | None:intergenic | 25.0% |
| ! | ATTTGCAAGGAATAAGATAT+GGG | - | chr5.1:3265700-3265719 | MS.gene024663:intron | 25.0% |
| ! | CAAATTCATAAGTAAAATGC+TGG | + | chr5.1:3265873-3265892 | None:intergenic | 25.0% |
| ! | GAAAAAATCAAAGTCAATAG+TGG | - | chr5.1:3266911-3266930 | MS.gene024663:intron | 25.0% |
| ! | GAAATATGTATGAAATGCAA+AGG | + | chr5.1:3266223-3266242 | None:intergenic | 25.0% |
| ! | TAGAACTATTAAAGGACTAT+TGG | - | chr5.1:3265936-3265955 | MS.gene024663:intron | 25.0% |
| ! | TTACACATTGAATAGTTGTT+TGG | - | chr5.1:3266877-3266896 | MS.gene024663:intron | 25.0% |
| !! | CAGCATTTTACTTATGAATT+TGG | - | chr5.1:3265871-3265890 | MS.gene024663:CDS | 25.0% |
| !! | CATTTTACTTATGAATTTGG+GGG | - | chr5.1:3265874-3265893 | MS.gene024663:CDS | 25.0% |
| !! | GCATTTTACTTATGAATTTG+GGG | - | chr5.1:3265873-3265892 | MS.gene024663:CDS | 25.0% |
| !! | TTGTTATTATATAGGAACTG+GGG | + | chr5.1:3266033-3266052 | None:intergenic | 25.0% |
| !!! | ACTTGTTATTATATAGGAAC+TGG | + | chr5.1:3266035-3266054 | None:intergenic | 25.0% |
| !!! | ATAGTACTTAGATTTTGAGT+CGG | + | chr5.1:3266787-3266806 | None:intergenic | 25.0% |
| !!! | CTTGTTATTATATAGGAACT+GGG | + | chr5.1:3266034-3266053 | None:intergenic | 25.0% |
| !!! | TGGTGTGATTTATTTTAGTT+TGG | - | chr5.1:3265650-3265669 | MS.gene024663:intron | 25.0% |
| AAATCCGATAACCTTAAAAC+CGG | - | chr5.1:3266989-3267008 | MS.gene024663:CDS | 30.0% | |
| AACATCAGTTGAAGTTATCA+AGG | - | chr5.1:3265034-3265053 | MS.gene024663:CDS | 30.0% | |
| AATGTGTAAATTGACATGGA+TGG | + | chr5.1:3266866-3266885 | None:intergenic | 30.0% | |
| AGCACCAATCAAATTCAAAA+GGG | + | chr5.1:3265164-3265183 | None:intergenic | 30.0% | |
| ATCTTGAGAATTGAGATTGT+TGG | - | chr5.1:3266066-3266085 | MS.gene024663:intron | 30.0% | |
| ATTTCTCCATATCAGATATC+AGG | - | chr5.1:3266238-3266257 | MS.gene024663:CDS | 30.0% | |
| ATTTCTCTCTCTTTCCAATT+AGG | - | chr5.1:3265492-3265511 | MS.gene024663:intron | 30.0% | |
| CAAAAAAACCTCATTTACCT+TGG | + | chr5.1:3265282-3265301 | None:intergenic | 30.0% | |
| GAAGTTATCAAGGACAAAAA+TGG | - | chr5.1:3265044-3265063 | MS.gene024663:CDS | 30.0% | |
| GATTTGCAAGGAATAAGATA+TGG | - | chr5.1:3265699-3265718 | MS.gene024663:intron | 30.0% | |
| TAGCACCAATCAAATTCAAA+AGG | + | chr5.1:3265165-3265184 | None:intergenic | 30.0% | |
| TCAATAATCGGCAAAAGTTA+AGG | + | chr5.1:3266417-3266436 | None:intergenic | 30.0% | |
| TGCTTTAACATTTGAATCTG+AGG | - | chr5.1:3266521-3266540 | MS.gene024663:CDS | 30.0% | |
| TTTCTTCTCATGATCTAGAA+CGG | + | chr5.1:3266691-3266710 | None:intergenic | 30.0% | |
| ! | AGATAGATAATAAGGTTGGT+TGG | - | chr5.1:3265630-3265649 | MS.gene024663:intron | 30.0% |
| ! | AGCATGTTGGTAAAATTTCA+AGG | + | chr5.1:3266612-3266631 | None:intergenic | 30.0% |
| ! | CTACTATCTAAAATTACCTG+TGG | + | chr5.1:3265568-3265587 | None:intergenic | 30.0% |
| ! | GAAATTTTACCAACATGCTA+AGG | - | chr5.1:3266613-3266632 | MS.gene024663:intron | 30.0% |
| ! | GCATGTTGGTAAAATTTCAA+GGG | + | chr5.1:3266611-3266630 | None:intergenic | 30.0% |
| ! | TATATGTGATAGTGATTCGT+AGG | - | chr5.1:3265403-3265422 | MS.gene024663:intron | 30.0% |
| ! | TCTACCCTTTTGAATTTGAT+TGG | - | chr5.1:3265157-3265176 | MS.gene024663:intron | 30.0% |
| ! | TGATCTTATCTTGAAAGTGT+TGG | + | chr5.1:3266277-3266296 | None:intergenic | 30.0% |
| !! | GCGATTCATTTTTCTTTGTA+AGG | + | chr5.1:3265971-3265990 | None:intergenic | 30.0% |
| !! | TTATCTTGAAAGTGTTGGAA+TGG | + | chr5.1:3266272-3266291 | None:intergenic | 30.0% |
| !!! | AAAGTCAATAGTGGATTTTG+GGG | - | chr5.1:3266920-3266939 | MS.gene024663:intron | 30.0% |
| !!! | CAAAGTCAATAGTGGATTTT+GGG | - | chr5.1:3266919-3266938 | MS.gene024663:intron | 30.0% |
| !!! | TCAAAGTCAATAGTGGATTT+TGG | - | chr5.1:3266918-3266937 | MS.gene024663:intron | 30.0% |
| !!! | TTATTTTAGTTTGGAAACCG+TGG | - | chr5.1:3265659-3265678 | MS.gene024663:intron | 30.0% |
| AATCCGATAACCTTAAAACC+GGG | - | chr5.1:3266990-3267009 | MS.gene024663:CDS | 35.0% | |
| AATGCAAAGGAGAAACTGAA+AGG | + | chr5.1:3266210-3266229 | None:intergenic | 35.0% | |
| ACATTTGTGATACGAAAGGA+AGG | - | chr5.1:3266714-3266733 | MS.gene024663:intron | 35.0% | |
| ACGAACATTTGTGATACGAA+AGG | - | chr5.1:3266710-3266729 | MS.gene024663:intron | 35.0% | |
| AGTGCTACATAGGAAATAAC+TGG | + | chr5.1:3265307-3265326 | None:intergenic | 35.0% | |
| ATATGAAGATATGGCCACAT+AGG | - | chr5.1:3265807-3265826 | MS.gene024663:CDS | 35.0% | |
| ATCTTCATATCGTCTTCAGA+TGG | + | chr5.1:3265797-3265816 | None:intergenic | 35.0% | |
| ATTACCTGTGGAAAACAGAT+TGG | + | chr5.1:3265556-3265575 | None:intergenic | 35.0% | |
| CAAATAAGACCTTAGCATGT+TGG | + | chr5.1:3266625-3266644 | None:intergenic | 35.0% | |
| CAAATTCAAAAGGGTAGATG+CGG | + | chr5.1:3265155-3265174 | None:intergenic | 35.0% | |
| CTCACTTCACTGTCAATAAT+CGG | + | chr5.1:3266429-3266448 | None:intergenic | 35.0% | |
| CTGAAGACGATATGAAGATA+TGG | - | chr5.1:3265798-3265817 | MS.gene024663:intron | 35.0% | |
| GATTATTGACAGTGAAGTGA+GGG | - | chr5.1:3266428-3266447 | MS.gene024663:intron | 35.0% | |
| GTTATTGTTCACTAGTACCA+AGG | - | chr5.1:3265262-3265281 | MS.gene024663:intron | 35.0% | |
| TGAATATGATATCTCGCATC+CGG | - | chr5.1:3266169-3266188 | MS.gene024663:intron | 35.0% | |
| TGCGAGATATCATATTCAGA+CGG | + | chr5.1:3266167-3266186 | None:intergenic | 35.0% | |
| TTACCTGTGGAAAACAGATT+GGG | + | chr5.1:3265555-3265574 | None:intergenic | 35.0% | |
| TTATCTCGATTCTAGCAGTA+TGG | - | chr5.1:3266662-3266681 | MS.gene024663:intron | 35.0% | |
| ! | AATAGTTGTTTGGAATCCCT+GGG | - | chr5.1:3266887-3266906 | MS.gene024663:intron | 35.0% |
| ! | CTTCAAATTAAAGGCATGTC+CGG | - | chr5.1:3265331-3265350 | MS.gene024663:CDS | 35.0% |
| ! | GCACTGACACTTCAAATTAA+AGG | - | chr5.1:3265322-3265341 | MS.gene024663:CDS | 35.0% |
| ! | GTATCTAGCTACATGCTTTT+GGG | + | chr5.1:3266011-3266030 | None:intergenic | 35.0% |
| ! | TAACATTTGAATCTGAGGTG+AGG | - | chr5.1:3266526-3266545 | MS.gene024663:CDS | 35.0% |
| !! | AAGGTCTTATTTGTGTTAGG+TGG | - | chr5.1:3266632-3266651 | MS.gene024663:intron | 35.0% |
| !! | GCTAAGGTCTTATTTGTGTT+AGG | - | chr5.1:3266629-3266648 | MS.gene024663:intron | 35.0% |
| !!! | GACTTTGATTTTTTCTCCCA+GGG | + | chr5.1:3266906-3266925 | None:intergenic | 35.0% |
| !!! | TGACTTTGATTTTTTCTCCC+AGG | + | chr5.1:3266907-3266926 | None:intergenic | 35.0% |
| AAAATGAATCGCATCCAGAG+AGG | - | chr5.1:3265979-3265998 | MS.gene024663:intron | 40.0% | |
| ACACCAATCATAGAAGTGAC+CGG | + | chr5.1:3265353-3265372 | None:intergenic | 40.0% | |
| ATCAGACACAACACTGATAC+TGG | + | chr5.1:3265384-3265403 | None:intergenic | 40.0% | |
| CACTAGTACCAAGGTAAATG+AGG | - | chr5.1:3265271-3265290 | MS.gene024663:intron | 40.0% | |
| CGATTATTGACAGTGAAGTG+AGG | - | chr5.1:3266427-3266446 | MS.gene024663:intron | 40.0% | |
| CTTTCATGGAAAACAGAACG+CGG | - | chr5.1:3265233-3265252 | MS.gene024663:intron | 40.0% | |
| GAAAGACACTTACCAACATC+TGG | + | chr5.1:3266744-3266763 | None:intergenic | 40.0% | |
| GGTAAAATTTCAAGGGTTGC+AGG | + | chr5.1:3266604-3266623 | None:intergenic | 40.0% | |
| TACGGACCTGATATCTGATA+TGG | + | chr5.1:3266247-3266266 | None:intergenic | 40.0% | |
| TAGAGCAACATGGATTTGCA+AGG | - | chr5.1:3265687-3265706 | MS.gene024663:intron | 40.0% | |
| ! | AATCCCAATCTGTTTTCCAC+AGG | - | chr5.1:3265549-3265568 | MS.gene024663:CDS | 40.0% |
| ! | AGCTTTTCCATTTGAATCCG+TGG | + | chr5.1:3265753-3265772 | None:intergenic | 40.0% |
| ! | GAATAGTTGTTTGGAATCCC+TGG | - | chr5.1:3266886-3266905 | MS.gene024663:intron | 40.0% |
| ! | GCTTTTCCATTTGAATCCGT+GGG | + | chr5.1:3265752-3265771 | None:intergenic | 40.0% |
| ! | GGTATCTAGCTACATGCTTT+TGG | + | chr5.1:3266012-3266031 | None:intergenic | 40.0% |
| ! | TTGAAGTGTCAGTGCTACAT+AGG | + | chr5.1:3265317-3265336 | None:intergenic | 40.0% |
| !! | GAAAGTGTTGGAATGGCATA+CGG | + | chr5.1:3266265-3266284 | None:intergenic | 40.0% |
| !! | GTTGTGTGTGTGACTTTTTC+AGG | - | chr5.1:3265187-3265206 | MS.gene024663:intron | 40.0% |
| !!! | CTTTTTCAGGTTAGCTTGCA+CGG | - | chr5.1:3265200-3265219 | MS.gene024663:intron | 40.0% |
| !!! | TCTCCCGGTTTTAAGGTTAT+CGG | + | chr5.1:3266996-3267015 | None:intergenic | 40.0% |
| !!! | TGGTTTTGGAGGAGTATAGA+CGG | + | chr5.1:3265518-3265537 | None:intergenic | 40.0% |
| AAGGAACGCTTCACAGAACA+AGG | - | chr5.1:3266495-3266514 | MS.gene024663:CDS | 45.0% | |
| AAGGAAGGTCTTCCAGATGT+TGG | - | chr5.1:3266729-3266748 | MS.gene024663:intron | 45.0% | |
| AAGGCTTGCCATTGACATTC+CGG | + | chr5.1:3266191-3266210 | None:intergenic | 45.0% | |
| ACAGTGAAGTGAGGGTAGAA+GGG | - | chr5.1:3266436-3266455 | MS.gene024663:intron | 45.0% | |
| CATGTTGCTCTAGTGTTCCA+CGG | + | chr5.1:3265679-3265698 | None:intergenic | 45.0% | |
| CCTGGATAACCTATACCAGA+AGG | - | chr5.1:3266476-3266495 | MS.gene024663:intron | 45.0% | |
| CCTTAAAACCGGGAGAAGAA+TGG | - | chr5.1:3267000-3267019 | MS.gene024663:CDS | 45.0% | |
| CCTTCTGGTATAGGTTATCC+AGG | + | chr5.1:3266479-3266498 | None:intergenic | 45.0% | |
| GTTGTTCTTCGAAACGTTCG+AGG | - | chr5.1:3265077-3265096 | MS.gene024663:CDS | 45.0% | |
| TGTCCGGTCACTTCTATGAT+TGG | - | chr5.1:3265347-3265366 | MS.gene024663:CDS | 45.0% | |
| ! | AGGAGTATAGACGGCCTAAT+TGG | + | chr5.1:3265509-3265528 | None:intergenic | 45.0% |
| ! | CCATTCTTCTCCCGGTTTTA+AGG | + | chr5.1:3267003-3267022 | None:intergenic | 45.0% |
| ! | TGAAGCGTTCCTTCTGGTAT+AGG | + | chr5.1:3266488-3266507 | None:intergenic | 45.0% |
| !!! | ATTCCTCCTCGTACTGGTTT+TGG | + | chr5.1:3265532-3265551 | None:intergenic | 45.0% |
| !!! | CTTTTGGGATTTCTCCTCTC+TGG | + | chr5.1:3265996-3266015 | None:intergenic | 45.0% |
| AAACCGGGAGAAGAATGGAC+CGG | - | chr5.1:3267005-3267024 | MS.gene024663:CDS | 50.0% | |
| AACAGAAAGCTCCAAGCAGC+CGG | + | chr5.1:3267027-3267046 | None:intergenic | 50.0% | |
| AAGCAAATGCTCTGCGTGGA+TGG | - | chr5.1:3266954-3266973 | MS.gene024663:CDS | 50.0% | |
| ACGGAGGGCAAGTTCTTTCA+TGG | - | chr5.1:3265219-3265238 | MS.gene024663:intron | 50.0% | |
| ACTCCTCCAAAACCAGTACG+AGG | - | chr5.1:3265523-3265542 | MS.gene024663:CDS | 50.0% | |
| ATTGGGATTCCTCCTCGTAC+TGG | + | chr5.1:3265538-3265557 | None:intergenic | 50.0% | |
| CGTGGAACACTAGAGCAACA+TGG | - | chr5.1:3265677-3265696 | MS.gene024663:intron | 50.0% | |
| GACAGTGAAGTGAGGGTAGA+AGG | - | chr5.1:3266435-3266454 | MS.gene024663:intron | 50.0% | |
| GTACAAGCAAATGCTCTGCG+TGG | - | chr5.1:3266950-3266969 | MS.gene024663:CDS | 50.0% | |
| GTTGGAGACTCTTGACTACC+TGG | - | chr5.1:3266458-3266477 | MS.gene024663:intron | 50.0% | |
| GTTTCGCCTAAGGGTCTGTT+TGG | - | chr5.1:3266131-3266150 | MS.gene024663:intron | 50.0% | |
| TAAAGCGTGTCGCACCTATG+TGG | + | chr5.1:3265824-3265843 | None:intergenic | 50.0% | |
| TCTCGCATCCGGAATGTCAA+TGG | - | chr5.1:3266180-3266199 | MS.gene024663:intron | 50.0% | |
| TGAAGTGAGGGTAGAAGGGT+TGG | - | chr5.1:3266440-3266459 | MS.gene024663:intron | 50.0% | |
| ! | CAGCTTCGAGTTTCGCCTAA+GGG | - | chr5.1:3266122-3266141 | MS.gene024663:intron | 50.0% |
| ! | GTTCTGTGAAGCGTTCCTTC+TGG | + | chr5.1:3266494-3266513 | None:intergenic | 50.0% |
| ! | TCAGCTTCGAGTTTCGCCTA+AGG | - | chr5.1:3266121-3266140 | MS.gene024663:intron | 50.0% |
| !! | TTCAGGTTAGCTTGCACGGA+GGG | - | chr5.1:3265204-3265223 | MS.gene024663:intron | 50.0% |
| !! | TTTCAGGTTAGCTTGCACGG+AGG | - | chr5.1:3265203-3265222 | MS.gene024663:intron | 50.0% |
| AAATCCTCCACCACTGCCCA+CGG | - | chr5.1:3265733-3265752 | MS.gene024663:intron | 55.0% | |
| AGAAGAATGGACCGGCTGCT+TGG | - | chr5.1:3267013-3267032 | MS.gene024663:CDS | 55.0% | |
| AGGGTCTGTTTGGCAGCAGA+TGG | - | chr5.1:3266141-3266160 | MS.gene024663:intron | 55.0% | |
| CCACTGCCCACGGATTCAAA+TGG | - | chr5.1:3265743-3265762 | MS.gene024663:intron | 55.0% | |
| CCATTTGAATCCGTGGGCAG+TGG | + | chr5.1:3265746-3265765 | None:intergenic | 55.0% | |
| CCTCCAAAACCAGTACGAGG+AGG | - | chr5.1:3265526-3265545 | MS.gene024663:CDS | 55.0% | |
| CGTTCGAGGAGCTTCAGCAA+CGG | - | chr5.1:3265091-3265110 | MS.gene024663:CDS | 55.0% | |
| CTGCTGCCAAACAGACCCTT+AGG | + | chr5.1:3266140-3266159 | None:intergenic | 55.0% | |
| TTTGAATCCGTGGGCAGTGG+TGG | + | chr5.1:3265743-3265762 | None:intergenic | 55.0% | |
| !!! | CCTCCTCGTACTGGTTTTGG+AGG | + | chr5.1:3265529-3265548 | None:intergenic | 55.0% |
| CAGCCGGTCCATTCTTCTCC+CGG | + | chr5.1:3267011-3267030 | None:intergenic | 60.0% | |
| TGCGTGGATGGTGCAGCAGT+TGG | - | chr5.1:3266966-3266985 | MS.gene024663:CDS | 60.0% | |
| GAATCCGTGGGCAGTGGTGG+AGG | + | chr5.1:3265740-3265759 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 3264999 | 3267061 | 3264999 | ID=MS.gene024663 |
| chr5.1 | mRNA | 3264999 | 3267061 | 3264999 | ID=MS.gene024663.t1;Parent=MS.gene024663 |
| chr5.1 | exon | 3266948 | 3267061 | 3266948 | ID=MS.gene024663.t1.exon1;Parent=MS.gene024663.t1 |
| chr5.1 | CDS | 3266948 | 3267061 | 3266948 | ID=cds.MS.gene024663.t1;Parent=MS.gene024663.t1 |
| chr5.1 | exon | 3266777 | 3266851 | 3266777 | ID=MS.gene024663.t1.exon2;Parent=MS.gene024663.t1 |
| chr5.1 | CDS | 3266777 | 3266851 | 3266777 | ID=cds.MS.gene024663.t1;Parent=MS.gene024663.t1 |
| chr5.1 | exon | 3266490 | 3266546 | 3266490 | ID=MS.gene024663.t1.exon3;Parent=MS.gene024663.t1 |
| chr5.1 | CDS | 3266490 | 3266546 | 3266490 | ID=cds.MS.gene024663.t1;Parent=MS.gene024663.t1 |
| chr5.1 | exon | 3266232 | 3266392 | 3266232 | ID=MS.gene024663.t1.exon4;Parent=MS.gene024663.t1 |
| chr5.1 | CDS | 3266232 | 3266392 | 3266232 | ID=cds.MS.gene024663.t1;Parent=MS.gene024663.t1 |
| chr5.1 | exon | 3265801 | 3265935 | 3265801 | ID=MS.gene024663.t1.exon5;Parent=MS.gene024663.t1 |
| chr5.1 | CDS | 3265801 | 3265935 | 3265801 | ID=cds.MS.gene024663.t1;Parent=MS.gene024663.t1 |
| chr5.1 | exon | 3265518 | 3265620 | 3265518 | ID=MS.gene024663.t1.exon6;Parent=MS.gene024663.t1 |
| chr5.1 | CDS | 3265518 | 3265620 | 3265518 | ID=cds.MS.gene024663.t1;Parent=MS.gene024663.t1 |
| chr5.1 | exon | 3265310 | 3265409 | 3265310 | ID=MS.gene024663.t1.exon7;Parent=MS.gene024663.t1 |
| chr5.1 | CDS | 3265310 | 3265409 | 3265310 | ID=cds.MS.gene024663.t1;Parent=MS.gene024663.t1 |
| chr5.1 | exon | 3264999 | 3265168 | 3264999 | ID=MS.gene024663.t1.exon8;Parent=MS.gene024663.t1 |
| chr5.1 | CDS | 3264999 | 3265168 | 3264999 | ID=cds.MS.gene024663.t1;Parent=MS.gene024663.t1 |
| Gene Sequence |
| Protein sequence |
