Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032655.t1 | KEH24767.1 | 98.3 | 350 | 5 | 1 | 1 | 350 | 4 | 352 | 5.40E-199 | 703.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032655.t1 | Q40784 | 58.4 | 298 | 119 | 4 | 56 | 348 | 32 | 329 | 5.3e-94 | 345.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032655.t1 | A0A072U4Z1 | 98.3 | 350 | 5 | 1 | 1 | 350 | 4 | 352 | 3.9e-199 | 703.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene060400 | MS.gene032655 | PPI |
| MS.gene032655 | MS.gene82807 | PPI |
| MS.gene032655 | MS.gene024472 | PPI |
| MS.gene032655 | MS.gene40102 | PPI |
| MS.gene032655 | MS.gene024663 | PPI |
| MS.gene032655 | MS.gene037013 | PPI |
| MS.gene032655 | MS.gene053627 | PPI |
| MS.gene032655 | MS.gene90270 | PPI |
| MS.gene22823 | MS.gene032655 | PPI |
| MS.gene032655 | MS.gene053078 | PPI |
| MS.gene032655 | MS.gene050620 | PPI |
| MS.gene032655 | MS.gene025937 | PPI |
| MS.gene028526 | MS.gene032655 | PPI |
| MS.gene032655 | MS.gene072750 | PPI |
| MS.gene21644 | MS.gene032655 | PPI |
| MS.gene032655 | MS.gene57695 | PPI |
| MS.gene73340 | MS.gene032655 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032655.t1 | MTR_6g004520 | 98.286 | 350 | 5 | 1 | 1 | 350 | 4 | 352 | 0.0 | 709 |
| MS.gene032655.t1 | MTR_6g004520 | 97.923 | 337 | 6 | 1 | 14 | 350 | 28 | 363 | 0.0 | 682 |
| MS.gene032655.t1 | MTR_6g004520 | 98.689 | 305 | 4 | 0 | 46 | 350 | 1 | 305 | 0.0 | 625 |
| MS.gene032655.t1 | MTR_2g036810 | 60.870 | 299 | 112 | 4 | 55 | 348 | 19 | 317 | 7.72e-129 | 372 |
| MS.gene032655.t1 | MTR_4g005740 | 59.060 | 298 | 117 | 4 | 55 | 347 | 15 | 312 | 1.71e-123 | 358 |
| MS.gene032655.t1 | MTR_7g116910 | 55.290 | 293 | 127 | 3 | 52 | 340 | 18 | 310 | 6.98e-117 | 341 |
| MS.gene032655.t1 | MTR_4g092780 | 54.949 | 293 | 128 | 3 | 52 | 340 | 18 | 310 | 6.66e-115 | 336 |
| MS.gene032655.t1 | MTR_5g009670 | 53.448 | 290 | 132 | 3 | 48 | 334 | 15 | 304 | 1.12e-112 | 330 |
| MS.gene032655.t1 | MTR_5g009670 | 52.564 | 234 | 108 | 3 | 48 | 278 | 15 | 248 | 8.01e-86 | 259 |
| MS.gene032655.t1 | MTR_5g020640 | 31.707 | 287 | 178 | 7 | 46 | 329 | 39 | 310 | 4.73e-35 | 130 |
| MS.gene032655.t1 | MTR_5g020640 | 35.326 | 184 | 103 | 5 | 46 | 222 | 39 | 213 | 5.71e-24 | 99.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032655.t1 | AT5G14500 | 69.737 | 304 | 91 | 1 | 46 | 348 | 1 | 304 | 5.89e-159 | 447 |
| MS.gene032655.t1 | AT3G01590 | 68.750 | 304 | 94 | 1 | 46 | 348 | 1 | 304 | 3.22e-156 | 441 |
| MS.gene032655.t1 | AT3G01590 | 68.750 | 304 | 94 | 1 | 46 | 348 | 1 | 304 | 3.22e-156 | 441 |
| MS.gene032655.t1 | AT5G14500 | 64.438 | 329 | 91 | 2 | 46 | 348 | 1 | 329 | 1.77e-152 | 432 |
| MS.gene032655.t1 | AT5G57330 | 60.403 | 298 | 111 | 5 | 55 | 346 | 15 | 311 | 6.61e-124 | 359 |
| MS.gene032655.t1 | AT3G61610 | 53.041 | 296 | 135 | 3 | 50 | 341 | 10 | 305 | 1.20e-111 | 328 |
| MS.gene032655.t1 | AT3G61610 | 53.041 | 296 | 135 | 3 | 50 | 341 | 16 | 311 | 1.52e-111 | 328 |
| MS.gene032655.t1 | AT4G23730 | 52.740 | 292 | 133 | 3 | 48 | 334 | 15 | 306 | 2.06e-107 | 317 |
| MS.gene032655.t1 | AT4G23730 | 52.013 | 298 | 132 | 4 | 48 | 334 | 15 | 312 | 2.66e-105 | 311 |
| MS.gene032655.t1 | AT4G23730 | 54.647 | 269 | 117 | 3 | 71 | 334 | 3 | 271 | 1.95e-101 | 300 |
| MS.gene032655.t1 | AT4G25900 | 48.227 | 282 | 140 | 4 | 55 | 334 | 38 | 315 | 3.59e-91 | 276 |
| MS.gene032655.t1 | AT5G66530 | 31.228 | 285 | 178 | 8 | 48 | 329 | 8 | 277 | 1.00e-34 | 129 |
| MS.gene032655.t1 | AT5G66530 | 31.228 | 285 | 178 | 8 | 48 | 329 | 36 | 305 | 2.11e-34 | 128 |
| MS.gene032655.t1 | AT5G66530 | 31.228 | 285 | 178 | 8 | 48 | 329 | 36 | 305 | 2.11e-34 | 128 |
| MS.gene032655.t1 | AT5G66530 | 31.228 | 285 | 178 | 8 | 48 | 329 | 36 | 305 | 2.11e-34 | 128 |
Find 63 sgRNAs with CRISPR-Local
Find 125 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCCTCGTCGAGTTCTTTA+TGG | 0.207407 | 6.3:-670040 | MS.gene032655:CDS |
| TTCAAAGGCATCTGTATAAT+TGG | 0.207577 | 6.3:+672275 | None:intergenic |
| GGCTAAAGCTCTACCTGATT+TGG | 0.261406 | 6.3:-670200 | MS.gene032655:CDS |
| GGATCAGTCAATACAATTCT+TGG | 0.263132 | 6.3:+672227 | None:intergenic |
| TTTCTACTGAACAGGCTAAA+TGG | 0.267382 | 6.3:-671355 | MS.gene032655:intron |
| TGGTTTCAGGTGCTTCTATA+TGG | 0.300749 | 6.3:-671600 | MS.gene032655:intron |
| TCACATGGCTTCAAGATAAT+AGG | 0.304789 | 6.3:+670124 | None:intergenic |
| AGTGAAAATGCAAAAGAAAA+TGG | 0.307262 | 6.3:+670768 | None:intergenic |
| CATCTGGAAGTGAATTCTTC+TGG | 0.316198 | 6.3:+670347 | None:intergenic |
| ATGGAATCCATGGAATAAAA+AGG | 0.317111 | 6.3:-670221 | MS.gene032655:CDS |
| GCTGATGCAATTACATTTGA+TGG | 0.318284 | 6.3:-670523 | MS.gene032655:CDS |
| ATGGAGGGCATATTGTTTCT+TGG | 0.327788 | 6.3:-671581 | MS.gene032655:CDS |
| ATGAAATTGAGAACATTGTT+TGG | 0.367606 | 6.3:-672398 | MS.gene032655:CDS |
| CTTTCACTCTTCTCCAATCC+AGG | 0.376719 | 6.3:+672354 | None:intergenic |
| ACAGATGAATGATTGTCTAT+TGG | 0.398461 | 6.3:+671084 | None:intergenic |
| GCTAAAGCTCTACCTGATTT+GGG | 0.410922 | 6.3:-670199 | MS.gene032655:CDS |
| TTTCTTCTCATGATCTATGA+TGG | 0.415275 | 6.3:+670384 | None:intergenic |
| AAGCTATTGCAGTGGACAAT+TGG | 0.418644 | 6.3:-670062 | MS.gene032655:CDS |
| TAATCATCAACTCCCAAATC+AGG | 0.419942 | 6.3:+670187 | None:intergenic |
| CACATGGAATGACAAGAAAC+AGG | 0.427401 | 6.3:-671143 | MS.gene032655:CDS |
| TGAGTAATTCAAGAGCATTA+AGG | 0.428845 | 6.3:-672319 | MS.gene032655:CDS |
| GCTCTTGAATTACTCACAAA+TGG | 0.432943 | 6.3:+672326 | None:intergenic |
| AATGTATTTCAAGACAAAGA+TGG | 0.433363 | 6.3:-672254 | MS.gene032655:CDS |
| AACTAATAGTAACCTGCATC+TGG | 0.440068 | 6.3:+670331 | None:intergenic |
| AAGAAACAGGATGTGGTCAT+TGG | 0.451987 | 6.3:-671130 | MS.gene032655:CDS |
| GATTTGATATTAAAGTCAAC+AGG | 0.453233 | 6.3:-671060 | MS.gene032655:CDS |
| ACCTCAGCTGATGAACCATT+TGG | 0.455672 | 6.3:+672206 | None:intergenic |
| TTGTCTTGAAATACATTCAA+AGG | 0.463676 | 6.3:+672260 | None:intergenic |
| GTGATAAGAGTGCAGTTGTA+TGG | 0.466146 | 6.3:-670240 | MS.gene032655:intron |
| TCTTGAAGCCATGTGAAGAA+TGG | 0.469606 | 6.3:-670117 | MS.gene032655:CDS |
| TTATCAGTGTTTCTGACTCT+AGG | 0.478385 | 6.3:+670795 | None:intergenic |
| ACATATGATGCATACCTTCG+TGG | 0.480527 | 6.3:+671021 | None:intergenic |
| ATTGGTTGCAGAACCTGGAT+TGG | 0.488869 | 6.3:-672367 | MS.gene032655:CDS |
| CAGATCAAGATTCACAGAAC+AGG | 0.492587 | 6.3:-670545 | MS.gene032655:CDS |
| GTGTTGCAGTTTGGTGATGT+TGG | 0.494871 | 6.3:-671177 | MS.gene032655:intron |
| AAGAATTCACTTCCAGATGC+AGG | 0.502151 | 6.3:-670343 | MS.gene032655:intron |
| TTCAGGTGCTTCTATATGGA+GGG | 0.504410 | 6.3:-671596 | MS.gene032655:intron |
| GATGAATGATTGTCTATTGG+AGG | 0.517054 | 6.3:+671087 | None:intergenic |
| ATTGTATTGACTGATCCAAA+TGG | 0.525147 | 6.3:-672221 | MS.gene032655:CDS |
| TGCAATTACATTTGATGGAG+AGG | 0.525933 | 6.3:-670518 | MS.gene032655:intron |
| GTGCAGTTGTATGGAATCCA+TGG | 0.531959 | 6.3:-670231 | MS.gene032655:intron |
| TTGTTTCTTGGAAGAATCAA+AGG | 0.540471 | 6.3:-671569 | MS.gene032655:CDS |
| TCTATTGGAGGTAGTGGTGA+AGG | 0.541685 | 6.3:+671099 | None:intergenic |
| TGATTGTCTATTGGAGGTAG+TGG | 0.547520 | 6.3:+671093 | None:intergenic |
| GTATATCAGCTTGCTTCGCA+CGG | 0.554586 | 6.3:-671307 | MS.gene032655:CDS |
| TGCAGTGAAGTGCGTATCGA+GGG | 0.559173 | 6.3:-670604 | MS.gene032655:intron |
| CTATTGGAGGTAGTGGTGAA+GGG | 0.565619 | 6.3:+671100 | None:intergenic |
| CTTAGGATATCTCTAAGTGC+TGG | 0.578744 | 6.3:-670834 | MS.gene032655:CDS |
| TAACCTTTCCATTCTTCACA+TGG | 0.581051 | 6.3:+670109 | None:intergenic |
| TATATCAGCTTGCTTCGCAC+GGG | 0.583439 | 6.3:-671306 | MS.gene032655:intron |
| TTTCAGGTGCTTCTATATGG+AGG | 0.583536 | 6.3:-671597 | MS.gene032655:intron |
| GAATGACAAGAAACAGGATG+TGG | 0.614717 | 6.3:-671137 | MS.gene032655:CDS |
| TTCTTGGAAGAATCAAAGGA+AGG | 0.617206 | 6.3:-671565 | MS.gene032655:CDS |
| GTGCAGTGAAGTGCGTATCG+AGG | 0.625522 | 6.3:-670605 | MS.gene032655:intron |
| AAGCCATGTGAAGAATGGAA+AGG | 0.627246 | 6.3:-670112 | MS.gene032655:CDS |
| TCCAAATGGTTCATCAGCTG+AGG | 0.630236 | 6.3:-672207 | MS.gene032655:intron |
| AATAGACAATCATTCATCTG+TGG | 0.635597 | 6.3:-671082 | MS.gene032655:CDS |
| GTTTCGTCAAGCTATTGCAG+TGG | 0.637223 | 6.3:-670070 | MS.gene032655:CDS |
| AAACAACATAAAGCAATCAG+AGG | 0.644716 | 6.3:-671332 | MS.gene032655:CDS |
| CAACATAAAGCAATCAGAGG+AGG | 0.656588 | 6.3:-671329 | MS.gene032655:CDS |
| GTTGGTTCACTTGAGACACA+TGG | 0.677188 | 6.3:-671159 | MS.gene032655:CDS |
| TTGACTTAAAGACGCCACGA+AGG | 0.719729 | 6.3:-671035 | MS.gene032655:intron |
| AAACCATAAAGAACTCGACG+AGG | 0.748460 | 6.3:+670037 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAAATAACCAAAATACTA+AGG | + | chr6.3:671772-671791 | None:intergenic | 15.0% |
| !!! | TTTGACTTAAATTTATCTTT+TGG | + | chr6.3:670411-670430 | None:intergenic | 15.0% |
| !! | AAAAAAATTCTCAACAAGTA+AGG | + | chr6.3:671201-671220 | None:intergenic | 20.0% |
| !! | AAAGATTATTATTCAAGGTA+TGG | + | chr6.3:670628-670647 | None:intergenic | 20.0% |
| !! | ACAAAAAATACTATCATGTT+AGG | + | chr6.3:670289-670308 | None:intergenic | 20.0% |
| !! | ACAAGTTAGTCAAAATTATA+AGG | + | chr6.3:670706-670725 | None:intergenic | 20.0% |
| !! | AGTCAAAAGATTATTATTCA+AGG | + | chr6.3:670633-670652 | None:intergenic | 20.0% |
| !! | ATATATATGAAAGAATGTCA+TGG | + | chr6.3:671949-671968 | None:intergenic | 20.0% |
| !! | TTCCATCATCAAATATTATT+TGG | - | chr6.3:670729-670748 | MS.gene032655:intron | 20.0% |
| !!! | AATAAAGCTTTTGAAACATA+TGG | - | chr6.3:670808-670827 | MS.gene032655:CDS | 20.0% |
| !!! | TTGTCTAAGTTTTAAAATGA+TGG | - | chr6.3:670762-670781 | MS.gene032655:CDS | 20.0% |
| ! | AAAAAATTACCCTAGTAATG+CGG | - | chr6.3:671024-671043 | MS.gene032655:intron | 25.0% |
| ! | AATGTATTTCAAGACAAAGA+TGG | - | chr6.3:670174-670193 | MS.gene032655:CDS | 25.0% |
| ! | ACATCATGAAAGTAATTGAA+TGG | + | chr6.3:671508-671527 | None:intergenic | 25.0% |
| ! | AGTGAAAATGCAAAAGAAAA+TGG | + | chr6.3:671663-671682 | None:intergenic | 25.0% |
| ! | AGTGATCTTAATGGAAAAAT+TGG | - | chr6.3:670259-670278 | MS.gene032655:intron | 25.0% |
| ! | ATGAAATTGAGAACATTGTT+TGG | - | chr6.3:670030-670049 | MS.gene032655:CDS | 25.0% |
| ! | GATTTGATATTAAAGTCAAC+AGG | - | chr6.3:671368-671387 | MS.gene032655:intron | 25.0% |
| ! | GTCCAAATAATATTTGATGA+TGG | + | chr6.3:670734-670753 | None:intergenic | 25.0% |
| ! | GTTAGTCAAAATTATAAGGA+AGG | + | chr6.3:670702-670721 | None:intergenic | 25.0% |
| ! | TAAAACTTAGACAATCATAC+CGG | + | chr6.3:670756-670775 | None:intergenic | 25.0% |
| ! | TAGTTGAATATCAACAAGTT+TGG | + | chr6.3:671224-671243 | None:intergenic | 25.0% |
| ! | TCATCAAATATTATTTGGAC+CGG | - | chr6.3:670734-670753 | MS.gene032655:intron | 25.0% |
| ! | TTCATCATATACACAACATA+TGG | - | chr6.3:671153-671172 | MS.gene032655:CDS | 25.0% |
| ! | TTGTCTTGAAATACATTCAA+AGG | + | chr6.3:670171-670190 | None:intergenic | 25.0% |
| !! | AAATTTGTCAGTGGTTTTTA+TGG | - | chr6.3:670978-670997 | MS.gene032655:intron | 25.0% |
| !! | TCTATGATGGCAATTTTATT+TGG | + | chr6.3:672034-672053 | None:intergenic | 25.0% |
| !! | TTTTATCTGTATCAGATATC+AGG | - | chr6.3:671691-671710 | MS.gene032655:intron | 25.0% |
| !!! | CATTGTTTGGTTTTTTTGAT+TGG | - | chr6.3:670043-670062 | MS.gene032655:CDS | 25.0% |
| !!! | CTATGATGGCAATTTTATTT+GGG | + | chr6.3:672033-672052 | None:intergenic | 25.0% |
| !!! | GTAATTTTTTTCCCTAGAAT+CGG | + | chr6.3:671014-671033 | None:intergenic | 25.0% |
| !!! | TTCAGAAATTTGTGTTACTT+TGG | - | chr6.3:670601-670620 | MS.gene032655:CDS | 25.0% |
| AAAAACCACTGACAAATTTG+TGG | + | chr6.3:670977-670996 | None:intergenic | 30.0% | |
| AAACAACATAAAGCAATCAG+AGG | - | chr6.3:671096-671115 | MS.gene032655:CDS | 30.0% | |
| AATAGACAATCATTCATCTG+TGG | - | chr6.3:671346-671365 | MS.gene032655:intron | 30.0% | |
| ACAGATGAATGATTGTCTAT+TGG | + | chr6.3:671347-671366 | None:intergenic | 30.0% | |
| ATGCAGGTTACTATTAGTTA+GGG | - | chr6.3:672101-672120 | MS.gene032655:intron | 30.0% | |
| ATGGAATCCATGGAATAAAA+AGG | - | chr6.3:672207-672226 | MS.gene032655:intron | 30.0% | |
| GGAAAAAAAGTGAAAATCAG+TGG | + | chr6.3:671730-671749 | None:intergenic | 30.0% | |
| TTGTGTAGCTCAACATAAAT+AGG | - | chr6.3:670539-670558 | MS.gene032655:CDS | 30.0% | |
| TTTCTTCTCATGATCTATGA+TGG | + | chr6.3:672047-672066 | None:intergenic | 30.0% | |
| ! | ATCATCATGCCTTAGTATTT+TGG | - | chr6.3:671760-671779 | MS.gene032655:intron | 30.0% |
| ! | TAGCTCTCTAAACATTGTTT+TGG | - | chr6.3:671972-671991 | MS.gene032655:intron | 30.0% |
| ! | TAGGTATTTTTCTACTGAAC+AGG | - | chr6.3:671065-671084 | MS.gene032655:CDS | 30.0% |
| ! | TTGTTTCTTGGAAGAATCAA+AGG | - | chr6.3:670859-670878 | MS.gene032655:intron | 30.0% |
| !! | ATTGTATTGACTGATCCAAA+TGG | - | chr6.3:670207-670226 | MS.gene032655:CDS | 30.0% |
| !! | TGAGTAATTCAAGAGCATTA+AGG | - | chr6.3:670109-670128 | MS.gene032655:CDS | 30.0% |
| !! | TTCAAAGGCATCTGTATAAT+TGG | + | chr6.3:670156-670175 | None:intergenic | 30.0% |
| !!! | CTTTTGAAACATATGGTTTC+AGG | - | chr6.3:670815-670834 | MS.gene032655:CDS | 30.0% |
| AACTAATAGTAACCTGCATC+TGG | + | chr6.3:672100-672119 | None:intergenic | 35.0% | |
| ATTACATTTGATGGAGAGGT+AGG | - | chr6.3:671914-671933 | MS.gene032655:intron | 35.0% | |
| CATTCTATGCTTACTTGCTT+TGG | - | chr6.3:670665-670684 | MS.gene032655:intron | 35.0% | |
| CTCAACAAGTAAGGAGAAAA+CGG | + | chr6.3:671192-671211 | None:intergenic | 35.0% | |
| CTTTATGTTGAAGATGTCTC+TGG | - | chr6.3:671440-671459 | MS.gene032655:intron | 35.0% | |
| GACTATCGAGTTTGATCAAT+AGG | - | chr6.3:671046-671065 | MS.gene032655:CDS | 35.0% | |
| GATGAATGATTGTCTATTGG+AGG | + | chr6.3:671344-671363 | None:intergenic | 35.0% | |
| GATGCAGGTTACTATTAGTT+AGG | - | chr6.3:672100-672119 | MS.gene032655:intron | 35.0% | |
| GCTCTTGAATTACTCACAAA+TGG | + | chr6.3:670105-670124 | None:intergenic | 35.0% | |
| GCTGATGCAATTACATTTGA+TGG | - | chr6.3:671905-671924 | MS.gene032655:intron | 35.0% | |
| GGATCAGTCAATACAATTCT+TGG | + | chr6.3:670204-670223 | None:intergenic | 35.0% | |
| TAACCTTTCCATTCTTCACA+TGG | + | chr6.3:672322-672341 | None:intergenic | 35.0% | |
| TAATCATCAACTCCCAAATC+AGG | + | chr6.3:672244-672263 | None:intergenic | 35.0% | |
| TACAATTCTGTGTTGCAGTT+TGG | - | chr6.3:671242-671261 | MS.gene032655:intron | 35.0% | |
| TCACATGGCTTCAAGATAAT+AGG | + | chr6.3:672307-672326 | None:intergenic | 35.0% | |
| TCCATTAAGATCACTAGCAA+AGG | + | chr6.3:670254-670273 | None:intergenic | 35.0% | |
| TCCTTTGCTAGTGATCTTAA+TGG | - | chr6.3:670250-670269 | MS.gene032655:intron | 35.0% | |
| TGCAATTACATTTGATGGAG+AGG | - | chr6.3:671910-671929 | MS.gene032655:intron | 35.0% | |
| TTCTTGGAAGAATCAAAGGA+AGG | - | chr6.3:670863-670882 | MS.gene032655:intron | 35.0% | |
| TTTCTACTGAACAGGCTAAA+TGG | - | chr6.3:671073-671092 | MS.gene032655:CDS | 35.0% | |
| ! | TTATCAGTGTTTCTGACTCT+AGG | + | chr6.3:671636-671655 | None:intergenic | 35.0% |
| !! | GCTTTAGCCTTTTTATTCCA+TGG | + | chr6.3:672217-672236 | None:intergenic | 35.0% |
| !! | GTTTTAAACCTCCGATTCTA+GGG | - | chr6.3:671000-671019 | MS.gene032655:intron | 35.0% |
| !!! | ACTGCTTTTTATGAGCAGTA+AGG | - | chr6.3:670890-670909 | MS.gene032655:intron | 35.0% |
| !!! | ATTTTTTTCCCTAGAATCGG+AGG | + | chr6.3:671011-671030 | None:intergenic | 35.0% |
| !!! | GTATATGCAGTTTTGAGTTG+AGG | - | chr6.3:671571-671590 | MS.gene032655:CDS | 35.0% |
| !!! | GTTTTGGTTTACCTTGTAGA+CGG | - | chr6.3:671988-672007 | MS.gene032655:intron | 35.0% |
| AAACCATAAAGAACTCGACG+AGG | + | chr6.3:672394-672413 | None:intergenic | 40.0% | |
| AAGAAACAGGATGTGGTCAT+TGG | - | chr6.3:671298-671317 | MS.gene032655:intron | 40.0% | |
| AAGAATTCACTTCCAGATGC+AGG | - | chr6.3:672085-672104 | MS.gene032655:intron | 40.0% | |
| AAGCCATGTGAAGAATGGAA+AGG | - | chr6.3:672316-672335 | MS.gene032655:CDS | 40.0% | |
| AAGCTATTGCAGTGGACAAT+TGG | - | chr6.3:672366-672385 | MS.gene032655:CDS | 40.0% | |
| ACATATGATGCATACCTTCG+TGG | + | chr6.3:671410-671429 | None:intergenic | 40.0% | |
| ACTTTCATGATGTGTGTCGT+CGG | - | chr6.3:671515-671534 | MS.gene032655:intron | 40.0% | |
| CAACATAAAGCAATCAGAGG+AGG | - | chr6.3:671099-671118 | MS.gene032655:CDS | 40.0% | |
| CACATGGAATGACAAGAAAC+AGG | - | chr6.3:671285-671304 | MS.gene032655:intron | 40.0% | |
| CAGATCAAGATTCACAGAAC+AGG | - | chr6.3:671883-671902 | MS.gene032655:intron | 40.0% | |
| CATCTGGAAGTGAATTCTTC+TGG | + | chr6.3:672084-672103 | None:intergenic | 40.0% | |
| CTTAGGATATCTCTAAGTGC+TGG | - | chr6.3:671594-671613 | MS.gene032655:CDS | 40.0% | |
| GAATGACAAGAAACAGGATG+TGG | - | chr6.3:671291-671310 | MS.gene032655:intron | 40.0% | |
| GACTTCCACAAATTTGTCAG+TGG | - | chr6.3:670969-670988 | MS.gene032655:intron | 40.0% | |
| GCTAAAGCTCTACCTGATTT+GGG | - | chr6.3:672229-672248 | MS.gene032655:CDS | 40.0% | |
| GGCATGATGATCATGTAGAA+AGG | + | chr6.3:671751-671770 | None:intergenic | 40.0% | |
| GTTGTGTCAGTTATACGTGT+CGG | + | chr6.3:671469-671488 | None:intergenic | 40.0% | |
| TCTTGAAGCCATGTGAAGAA+TGG | - | chr6.3:672311-672330 | MS.gene032655:CDS | 40.0% | |
| TGATTGTCTATTGGAGGTAG+TGG | + | chr6.3:671338-671357 | None:intergenic | 40.0% | |
| TTCAGGTGCTTCTATATGGA+GGG | - | chr6.3:670832-670851 | MS.gene032655:CDS | 40.0% | |
| ! | ATGGAGGGCATATTGTTTCT+TGG | - | chr6.3:670847-670866 | MS.gene032655:CDS | 40.0% |
| ! | GTGATAAGAGTGCAGTTGTA+TGG | - | chr6.3:672188-672207 | MS.gene032655:intron | 40.0% |
| ! | TAACACATCAAGAGCGTGTT+TGG | + | chr6.3:670511-670530 | None:intergenic | 40.0% |
| ! | TGGTTTCAGGTGCTTCTATA+TGG | - | chr6.3:670828-670847 | MS.gene032655:CDS | 40.0% |
| ! | TTTCAGGTGCTTCTATATGG+AGG | - | chr6.3:670831-670850 | MS.gene032655:CDS | 40.0% |
| !! | TTTTGATTGGTTGCAGAACC+TGG | - | chr6.3:670056-670075 | MS.gene032655:CDS | 40.0% |
| !!! | GGTTTTAAACCTCCGATTCT+AGG | - | chr6.3:670999-671018 | MS.gene032655:intron | 40.0% |
| AATGGTTCATCAGCTGAGGT+TGG | - | chr6.3:670225-670244 | MS.gene032655:CDS | 45.0% | |
| ACCTCAGCTGATGAACCATT+TGG | + | chr6.3:670225-670244 | None:intergenic | 45.0% | |
| ACTCGATAGTCCGCATTACT+AGG | + | chr6.3:671037-671056 | None:intergenic | 45.0% | |
| ATTGGTTGCAGAACCTGGAT+TGG | - | chr6.3:670061-670080 | MS.gene032655:CDS | 45.0% | |
| CTCGATAGTCCGCATTACTA+GGG | + | chr6.3:671036-671055 | None:intergenic | 45.0% | |
| CTTTCACTCTTCTCCAATCC+AGG | + | chr6.3:670077-670096 | None:intergenic | 45.0% | |
| GATCCTCGTCGAGTTCTTTA+TGG | - | chr6.3:672388-672407 | MS.gene032655:CDS | 45.0% | |
| GGCTAAAGCTCTACCTGATT+TGG | - | chr6.3:672228-672247 | MS.gene032655:CDS | 45.0% | |
| GTATACTCTGTCCGTCTACA+AGG | + | chr6.3:672002-672021 | None:intergenic | 45.0% | |
| GTGCAGTTGTATGGAATCCA+TGG | - | chr6.3:672197-672216 | MS.gene032655:intron | 45.0% | |
| GTTTCGTCAAGCTATTGCAG+TGG | - | chr6.3:672358-672377 | MS.gene032655:CDS | 45.0% | |
| TCCAAATGGTTCATCAGCTG+AGG | - | chr6.3:670221-670240 | MS.gene032655:CDS | 45.0% | |
| TTGACTTAAAGACGCCACGA+AGG | - | chr6.3:671393-671412 | MS.gene032655:intron | 45.0% | |
| ! | CTATTGGAGGTAGTGGTGAA+GGG | + | chr6.3:671331-671350 | None:intergenic | 45.0% |
| ! | GTATATCAGCTTGCTTCGCA+CGG | - | chr6.3:671121-671140 | MS.gene032655:CDS | 45.0% |
| ! | GTTGGTTCACTTGAGACACA+TGG | - | chr6.3:671269-671288 | MS.gene032655:intron | 45.0% |
| ! | TATATCAGCTTGCTTCGCAC+GGG | - | chr6.3:671122-671141 | MS.gene032655:CDS | 45.0% |
| ! | TCTATTGGAGGTAGTGGTGA+AGG | + | chr6.3:671332-671351 | None:intergenic | 45.0% |
| !! | GTGTTGCAGTTTGGTGATGT+TGG | - | chr6.3:671251-671270 | MS.gene032655:intron | 45.0% |
| !!! | GCAGTTTTGAGTTGAGGCTT+AGG | - | chr6.3:671577-671596 | MS.gene032655:CDS | 45.0% |
| TGCAGTGAAGTGCGTATCGA+GGG | - | chr6.3:671824-671843 | MS.gene032655:intron | 50.0% | |
| GTGCAGTGAAGTGCGTATCG+AGG | - | chr6.3:671823-671842 | MS.gene032655:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 670030 | 672420 | 670030 | ID=MS.gene032655 |
| chr6.3 | mRNA | 670030 | 672420 | 670030 | ID=MS.gene032655.t1;Parent=MS.gene032655 |
| chr6.3 | exon | 672208 | 672420 | 672208 | ID=MS.gene032655.t1.exon1;Parent=MS.gene032655.t1 |
| chr6.3 | CDS | 672208 | 672420 | 672208 | ID=cds.MS.gene032655.t1;Parent=MS.gene032655.t1 |
| chr6.3 | exon | 671539 | 671613 | 671539 | ID=MS.gene032655.t1.exon2;Parent=MS.gene032655.t1 |
| chr6.3 | CDS | 671539 | 671613 | 671539 | ID=cds.MS.gene032655.t1;Parent=MS.gene032655.t1 |
| chr6.3 | exon | 671307 | 671363 | 671307 | ID=MS.gene032655.t1.exon3;Parent=MS.gene032655.t1 |
| chr6.3 | CDS | 671307 | 671363 | 671307 | ID=cds.MS.gene032655.t1;Parent=MS.gene032655.t1 |
| chr6.3 | exon | 671036 | 671190 | 671036 | ID=MS.gene032655.t1.exon4;Parent=MS.gene032655.t1 |
| chr6.3 | CDS | 671036 | 671190 | 671036 | ID=cds.MS.gene032655.t1;Parent=MS.gene032655.t1 |
| chr6.3 | exon | 670738 | 670869 | 670738 | ID=MS.gene032655.t1.exon5;Parent=MS.gene032655.t1 |
| chr6.3 | CDS | 670738 | 670869 | 670738 | ID=cds.MS.gene032655.t1;Parent=MS.gene032655.t1 |
| chr6.3 | exon | 670519 | 670621 | 670519 | ID=MS.gene032655.t1.exon6;Parent=MS.gene032655.t1 |
| chr6.3 | CDS | 670519 | 670621 | 670519 | ID=cds.MS.gene032655.t1;Parent=MS.gene032655.t1 |
| chr6.3 | exon | 670344 | 670443 | 670344 | ID=MS.gene032655.t1.exon7;Parent=MS.gene032655.t1 |
| chr6.3 | CDS | 670344 | 670443 | 670344 | ID=cds.MS.gene032655.t1;Parent=MS.gene032655.t1 |
| chr6.3 | exon | 670030 | 670247 | 670030 | ID=MS.gene032655.t1.exon8;Parent=MS.gene032655.t1 |
| chr6.3 | CDS | 670030 | 670247 | 670030 | ID=cds.MS.gene032655.t1;Parent=MS.gene032655.t1 |
| Gene Sequence |
| Protein sequence |
