Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82807.t1 | XP_013450738.2 | 97.8 | 357 | 7 | 1 | 2 | 358 | 3 | 358 | 9.10E-202 | 712.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82807.t1 | Q40784 | 57.7 | 298 | 121 | 4 | 64 | 356 | 32 | 329 | 1.3e-92 | 341.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82807.t1 | A0A072U4Z1 | 97.7 | 353 | 7 | 1 | 6 | 358 | 1 | 352 | 5.2e-199 | 703.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene028526 | MS.gene82807 | PPI |
| MS.gene032655 | MS.gene82807 | PPI |
| MS.gene21644 | MS.gene82807 | PPI |
| MS.gene82807 | MS.gene072750 | PPI |
| MS.gene82807 | MS.gene050620 | PPI |
| MS.gene82807 | MS.gene57695 | PPI |
| MS.gene060400 | MS.gene82807 | PPI |
| MS.gene053627 | MS.gene82807 | PPI |
| MS.gene82807 | MS.gene024472 | PPI |
| MS.gene82807 | MS.gene40102 | PPI |
| MS.gene40102 | MS.gene82807 | PPI |
| MS.gene22823 | MS.gene82807 | PPI |
| MS.gene82807 | MS.gene90270 | PPI |
| MS.gene82807 | MS.gene053078 | PPI |
| MS.gene82807 | MS.gene025937 | PPI |
| MS.gene82807 | MS.gene024663 | PPI |
| MS.gene73340 | MS.gene82807 | PPI |
| MS.gene82807 | MS.gene037013 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82807.t1 | MTR_6g004520 | 97.734 | 353 | 7 | 1 | 6 | 358 | 1 | 352 | 0.0 | 709 |
| MS.gene82807.t1 | MTR_6g004520 | 97.329 | 337 | 8 | 1 | 22 | 358 | 28 | 363 | 0.0 | 677 |
| MS.gene82807.t1 | MTR_6g004520 | 98.033 | 305 | 6 | 0 | 54 | 358 | 1 | 305 | 0.0 | 620 |
| MS.gene82807.t1 | MTR_2g036810 | 60.201 | 299 | 114 | 4 | 63 | 356 | 19 | 317 | 3.93e-127 | 367 |
| MS.gene82807.t1 | MTR_4g005740 | 58.725 | 298 | 118 | 4 | 63 | 355 | 15 | 312 | 6.24e-123 | 357 |
| MS.gene82807.t1 | MTR_7g116910 | 55.290 | 293 | 127 | 3 | 60 | 348 | 18 | 310 | 8.70e-116 | 338 |
| MS.gene82807.t1 | MTR_4g092780 | 54.949 | 293 | 128 | 3 | 60 | 348 | 18 | 310 | 1.04e-113 | 333 |
| MS.gene82807.t1 | MTR_5g009670 | 53.448 | 290 | 132 | 3 | 56 | 342 | 15 | 304 | 1.58e-111 | 327 |
| MS.gene82807.t1 | MTR_5g009670 | 52.790 | 233 | 107 | 3 | 56 | 285 | 15 | 247 | 2.44e-85 | 259 |
| MS.gene82807.t1 | MTR_5g020640 | 31.010 | 287 | 180 | 7 | 54 | 337 | 39 | 310 | 9.06e-34 | 127 |
| MS.gene82807.t1 | MTR_5g020640 | 35.326 | 184 | 103 | 5 | 54 | 230 | 39 | 213 | 2.01e-23 | 97.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82807.t1 | AT5G14500 | 69.408 | 304 | 92 | 1 | 54 | 356 | 1 | 304 | 3.76e-157 | 443 |
| MS.gene82807.t1 | AT3G01590 | 68.421 | 304 | 95 | 1 | 54 | 356 | 1 | 304 | 8.36e-155 | 437 |
| MS.gene82807.t1 | AT3G01590 | 68.421 | 304 | 95 | 1 | 54 | 356 | 1 | 304 | 8.36e-155 | 437 |
| MS.gene82807.t1 | AT5G14500 | 64.134 | 329 | 92 | 2 | 54 | 356 | 1 | 329 | 1.13e-150 | 428 |
| MS.gene82807.t1 | AT5G57330 | 60.067 | 298 | 112 | 5 | 63 | 354 | 15 | 311 | 8.75e-123 | 356 |
| MS.gene82807.t1 | AT3G61610 | 53.378 | 296 | 134 | 3 | 58 | 349 | 16 | 311 | 1.41e-111 | 328 |
| MS.gene82807.t1 | AT3G61610 | 53.378 | 296 | 134 | 3 | 58 | 349 | 10 | 305 | 1.74e-111 | 327 |
| MS.gene82807.t1 | AT4G23730 | 52.397 | 292 | 134 | 3 | 56 | 342 | 15 | 306 | 4.94e-106 | 313 |
| MS.gene82807.t1 | AT4G23730 | 51.342 | 298 | 134 | 4 | 56 | 342 | 15 | 312 | 2.18e-103 | 307 |
| MS.gene82807.t1 | AT4G23730 | 54.275 | 269 | 118 | 3 | 79 | 342 | 3 | 271 | 4.42e-100 | 297 |
| MS.gene82807.t1 | AT4G25900 | 47.872 | 282 | 141 | 4 | 63 | 342 | 38 | 315 | 4.31e-90 | 273 |
| MS.gene82807.t1 | AT5G66530 | 30.877 | 285 | 179 | 8 | 56 | 337 | 8 | 277 | 1.84e-33 | 125 |
| MS.gene82807.t1 | AT5G66530 | 30.877 | 285 | 179 | 8 | 56 | 337 | 36 | 305 | 2.80e-33 | 125 |
| MS.gene82807.t1 | AT5G66530 | 30.877 | 285 | 179 | 8 | 56 | 337 | 36 | 305 | 2.80e-33 | 125 |
| MS.gene82807.t1 | AT5G66530 | 30.877 | 285 | 179 | 8 | 56 | 337 | 36 | 305 | 2.80e-33 | 125 |
Find 70 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAAAGGCATCTGTATAAT+TGG | 0.207577 | 6.1:+616841 | None:intergenic |
| TTTCTACTGAACAGGCTAAA+TGG | 0.252721 | 6.1:-615795 | MS.gene82807:intron |
| GGCCAAAGTTCTACCTGATT+TGG | 0.254754 | 6.1:-614300 | MS.gene82807:CDS |
| GATCCTCGTAGAGTTCTTTA+TGG | 0.280881 | 6.1:-614140 | MS.gene82807:CDS |
| TGGTTTCAGGTGCTTCTATA+TGG | 0.300749 | 6.1:-616166 | MS.gene82807:intron |
| TCACATGGCTTCAAGATAAT+AGG | 0.304789 | 6.1:+614224 | None:intergenic |
| AGTGAAAATGCAAAAGAAAA+TGG | 0.307262 | 6.1:+614846 | None:intergenic |
| GCTGATGCAATTACATTTGA+TGG | 0.309473 | 6.1:-614621 | MS.gene82807:CDS |
| ATGGAATCCATGGAATAAAA+AGG | 0.317111 | 6.1:-614321 | MS.gene82807:CDS |
| ATGGAGGGCATATTGTTTCT+TGG | 0.327788 | 6.1:-616147 | MS.gene82807:CDS |
| TATCTGGAAGTGAATTCTTC+TGG | 0.338427 | 6.1:+614447 | None:intergenic |
| AACTAATAGTAACCTGTATC+TGG | 0.360667 | 6.1:+614431 | None:intergenic |
| ATGAAATTGAGAACATTGTT+TGG | 0.367606 | 6.1:-616964 | MS.gene82807:CDS |
| CTTTCACTCTTCTCCAATCC+AGG | 0.376719 | 6.1:+616920 | None:intergenic |
| GCCAAAGTTCTACCTGATTT+GGG | 0.381734 | 6.1:-614299 | MS.gene82807:CDS |
| ATTTGTCTGTATCAGATATC+AGG | 0.393837 | 6.1:-614815 | MS.gene82807:intron |
| ACAGATGAATGATTGTCTAT+TGG | 0.398461 | 6.1:+615119 | None:intergenic |
| AAGCTATTGCAGTGGACAAT+TGG | 0.406866 | 6.1:-614162 | MS.gene82807:CDS |
| ATATTATGTTGATGTTGTTA+TGG | 0.408797 | 6.1:-616999 | None:intergenic |
| AAGAATTCACTTCCAGATAC+AGG | 0.417082 | 6.1:-614443 | MS.gene82807:intron |
| TAATCATCAACTCCCAAATC+AGG | 0.419942 | 6.1:+614287 | None:intergenic |
| CACAAGGAATGACAAGAAAC+AGG | 0.420881 | 6.1:-615178 | MS.gene82807:CDS |
| TGAGTAATTCAAGAGCATTA+AGG | 0.428845 | 6.1:-616885 | MS.gene82807:CDS |
| GCTCTTGAATTACTCACAAA+TGG | 0.432943 | 6.1:+616892 | None:intergenic |
| AATGTATTTCAAGACAAAGA+TGG | 0.433363 | 6.1:-616820 | MS.gene82807:CDS |
| GGATCAGTCAATACAATCCT+TGG | 0.445366 | 6.1:+616793 | None:intergenic |
| AAGAAACAGGATGTGGTCAT+TGG | 0.451987 | 6.1:-615165 | MS.gene82807:CDS |
| GATTTGATATTAAAGTCAAC+AGG | 0.453233 | 6.1:-615095 | MS.gene82807:CDS |
| ACCTCAGCTGATGAACCATT+TGG | 0.455672 | 6.1:+616772 | None:intergenic |
| TTGTCTTGAAATACATTCAA+AGG | 0.463676 | 6.1:+616826 | None:intergenic |
| GTTGATGTTGTTATGGTGGA+TGG | 0.474269 | 6.1:-616992 | None:intergenic |
| TTATCAGTGTTTCTGACTCT+AGG | 0.478385 | 6.1:+614873 | None:intergenic |
| GTGATGAGAGTGCAGTTGTA+TGG | 0.481151 | 6.1:-614340 | MS.gene82807:intron |
| ATTGGTTGCAGAACCTGGAT+TGG | 0.488869 | 6.1:-616933 | MS.gene82807:CDS |
| GTGTTGCAGTTTGGTGATGT+TGG | 0.494871 | 6.1:-615212 | MS.gene82807:intron |
| TCTTGAAGCCATGTGAAGAA+TGG | 0.498380 | 6.1:-614217 | MS.gene82807:CDS |
| TGAAGTGCGTATTGAGGGAC+TGG | 0.503808 | 6.1:-614697 | MS.gene82807:CDS |
| TTCAGGTGCTTCTATATGGA+GGG | 0.504410 | 6.1:-616162 | MS.gene82807:intron |
| GATGAATGATTGTCTATTGG+AGG | 0.517054 | 6.1:+615122 | None:intergenic |
| GTATATCAGCTTGCTTTGCA+CGG | 0.520980 | 6.1:-615747 | MS.gene82807:CDS |
| ACATATGATACATACCTTCG+TGG | 0.523003 | 6.1:+615056 | None:intergenic |
| TAGCCCTTCCATTCTTCACA+TGG | 0.529103 | 6.1:+614209 | None:intergenic |
| TGCAGTGAAGTGCGTATTGA+GGG | 0.534124 | 6.1:-614702 | MS.gene82807:intron |
| ATTGTATTGACTGATCCAAA+TGG | 0.534205 | 6.1:-616787 | MS.gene82807:CDS |
| TCCCAAATCAGGTAGAACTT+TGG | 0.535834 | 6.1:+614298 | None:intergenic |
| GTGCAGTTGTATGGAATCCA+TGG | 0.540295 | 6.1:-614331 | MS.gene82807:intron |
| TTGTTTCTTGGAAGAATCAA+AGG | 0.540471 | 6.1:-616135 | MS.gene82807:CDS |
| TCTATTGGAGGTAGTGGTGA+AGG | 0.541685 | 6.1:+615134 | None:intergenic |
| TTATGTTGATGTTGTTATGG+TGG | 0.541988 | 6.1:-616996 | None:intergenic |
| TGCAATTACATTTGATGGAG+AGG | 0.542074 | 6.1:-614616 | MS.gene82807:intron |
| TAGATCAAGATTCACTGAGC+AGG | 0.544743 | 6.1:-614643 | MS.gene82807:CDS |
| TGATTGTCTATTGGAGGTAG+TGG | 0.547520 | 6.1:+615128 | None:intergenic |
| TATATCAGCTTGCTTTGCAC+GGG | 0.548498 | 6.1:-615746 | MS.gene82807:intron |
| GAAGCCATGTGAAGAATGGA+AGG | 0.558681 | 6.1:-614213 | MS.gene82807:CDS |
| CTATTGGAGGTAGTGGTGAA+GGG | 0.565619 | 6.1:+615135 | None:intergenic |
| CTTCGCATATCTCTAAGTGC+TGG | 0.569161 | 6.1:-614912 | MS.gene82807:CDS |
| TTTCAGGTGCTTCTATATGG+AGG | 0.583536 | 6.1:-616163 | MS.gene82807:intron |
| GTGCAGTGAAGTGCGTATTG+AGG | 0.591729 | 6.1:-614703 | MS.gene82807:intron |
| AAGACAAAGATGGATTGCCA+AGG | 0.592129 | 6.1:-616810 | MS.gene82807:CDS |
| GAATGACAAGAAACAGGATG+TGG | 0.611763 | 6.1:-615172 | MS.gene82807:CDS |
| TTCTTGGAAGAATCAAAGGA+AGG | 0.617206 | 6.1:-616131 | MS.gene82807:CDS |
| TCCAAATGGTTCATCAGCTG+AGG | 0.630236 | 6.1:-616773 | MS.gene82807:intron |
| AATAGACAATCATTCATCTG+TGG | 0.635597 | 6.1:-615117 | MS.gene82807:CDS |
| GTTTCATCAAGCTATTGCAG+TGG | 0.637223 | 6.1:-614170 | MS.gene82807:CDS |
| AAACAACATAAAGCAATCAG+AGG | 0.644716 | 6.1:-615772 | MS.gene82807:CDS |
| CAACATAAAGCAATCAGAGG+AGG | 0.656588 | 6.1:-615769 | MS.gene82807:CDS |
| AAGCCATGTGAAGAATGGAA+GGG | 0.663507 | 6.1:-614212 | MS.gene82807:CDS |
| GTTGGTTCACTTGAGACACA+AGG | 0.687208 | 6.1:-615194 | MS.gene82807:CDS |
| TTGACTTAAAGACGCCACGA+AGG | 0.719729 | 6.1:-615070 | MS.gene82807:intron |
| AAACCATAAAGAACTCTACG+AGG | 0.756087 | 6.1:+614137 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAGTTTTCTAATTATTTTTT+CGG | - | chr6.1:616562-616581 | MS.gene82807:intron | 10.0% |
| !! | AATCAAAAGATTATTATTCA+AGG | + | chr6.1:614757-614776 | None:intergenic | 15.0% |
| !! | TTCTATCATCAAATATTATT+TGG | - | chr6.1:614853-614872 | MS.gene82807:CDS | 15.0% |
| !!! | ACAAAAAATACTATCATTTT+AGG | + | chr6.1:614413-614432 | None:intergenic | 15.0% |
| !!! | TTGTATATTTTGAATTGTTT+TGG | - | chr6.1:615257-615276 | MS.gene82807:intron | 15.0% |
| !!! | TTTGACTTAAATTTATCTTT+TGG | + | chr6.1:614535-614554 | None:intergenic | 15.0% |
| !!! | TTTTTTGTGATCATAAAAAT+CGG | - | chr6.1:614425-614444 | MS.gene82807:intron | 15.0% |
| !! | AAAGATTATTATTCAAGGTA+TGG | + | chr6.1:614752-614771 | None:intergenic | 20.0% |
| !! | AACACTTAATGTAAATTATG+GGG | - | chr6.1:615298-615317 | MS.gene82807:intron | 20.0% |
| !! | AAGTAATTTAAGGAAAAACT+TGG | - | chr6.1:615740-615759 | MS.gene82807:intron | 20.0% |
| !! | ACAAGTTAGTCAAAATTATA+AGG | + | chr6.1:614830-614849 | None:intergenic | 20.0% |
| !! | AGTAATTTAAGGAAAAACTT+GGG | - | chr6.1:615741-615760 | MS.gene82807:intron | 20.0% |
| !! | ATTAAAACTTTACTTGAGTA+AGG | + | chr6.1:615451-615470 | None:intergenic | 20.0% |
| !! | GAACACTTAATGTAAATTAT+GGG | - | chr6.1:615297-615316 | MS.gene82807:intron | 20.0% |
| !! | GAGAATAATTATTTCAGTTA+GGG | - | chr6.1:615211-615230 | MS.gene82807:intron | 20.0% |
| !! | GATATATACGAAGTAATTTA+AGG | - | chr6.1:615730-615749 | MS.gene82807:intron | 20.0% |
| !! | GTTATTAGATAAGTAAAGAA+TGG | - | chr6.1:615189-615208 | MS.gene82807:CDS | 20.0% |
| !! | TATAAATAACCAAAATGCTA+AGG | + | chr6.1:616364-616383 | None:intergenic | 20.0% |
| !! | TGAACACTTAATGTAAATTA+TGG | - | chr6.1:615296-615315 | MS.gene82807:intron | 20.0% |
| !! | TTAAGTGAAATAGAAATAGA+AGG | + | chr6.1:616136-616155 | None:intergenic | 20.0% |
| !!! | AATAAAGCTTTTGAAACATA+TGG | - | chr6.1:614932-614951 | MS.gene82807:intron | 20.0% |
| !!! | ACTAGTAATATTTTGAGAAA+AGG | - | chr6.1:615538-615557 | MS.gene82807:intron | 20.0% |
| !!! | CTAGTAATATTTTGAGAAAA+GGG | - | chr6.1:615539-615558 | MS.gene82807:intron | 20.0% |
| !!! | TACTCAAGTAAAGTTTTAAT+TGG | - | chr6.1:615451-615470 | MS.gene82807:intron | 20.0% |
| !!! | TTGTCTAAGTTTTAAAATGA+AGG | - | chr6.1:614886-614905 | MS.gene82807:CDS | 20.0% |
| !!! | TTTTTGTGATCATAAAAATC+GGG | - | chr6.1:614426-614445 | MS.gene82807:intron | 20.0% |
| ! | AATGTATTTCAAGACAAAGA+TGG | - | chr6.1:614298-614317 | MS.gene82807:CDS | 25.0% |
| ! | AATTTAACAAACATCCAAGT+TGG | + | chr6.1:615239-615258 | None:intergenic | 25.0% |
| ! | AGTGAAAATGCAAAAGAAAA+TGG | + | chr6.1:616275-616294 | None:intergenic | 25.0% |
| ! | AGTGATCTTAATGGAAAAAT+GGG | - | chr6.1:614383-614402 | MS.gene82807:intron | 25.0% |
| ! | ATACAGGTTACTATTAGTTA+GGG | - | chr6.1:616691-616710 | MS.gene82807:intron | 25.0% |
| ! | ATGAAATTGAGAACATTGTT+TGG | - | chr6.1:614154-614173 | MS.gene82807:CDS | 25.0% |
| ! | CTATTGATGTTACATGAAAT+TGG | - | chr6.1:615651-615670 | MS.gene82807:intron | 25.0% |
| ! | GATTTGATATTAAAGTCAAC+AGG | - | chr6.1:616023-616042 | MS.gene82807:intron | 25.0% |
| ! | GGAGAATAATTATTTCAGTT+AGG | - | chr6.1:615210-615229 | MS.gene82807:intron | 25.0% |
| ! | GTTAGTCAAAATTATAAGGA+AGG | + | chr6.1:614826-614845 | None:intergenic | 25.0% |
| ! | TAAAACTTAGACAATCATAC+CGG | + | chr6.1:614880-614899 | None:intergenic | 25.0% |
| ! | TAGTGATCTTAATGGAAAAA+TGG | - | chr6.1:614382-614401 | MS.gene82807:intron | 25.0% |
| ! | TCATCAAATATTATTTGGAC+CGG | - | chr6.1:614858-614877 | MS.gene82807:CDS | 25.0% |
| ! | TTGTCTTGAAATACATTCAA+AGG | + | chr6.1:614295-614314 | None:intergenic | 25.0% |
| !! | TCTATGATGGCAATTTTATT+TGG | + | chr6.1:616624-616643 | None:intergenic | 25.0% |
| !! | TTTCTTTTCATGATCTATGA+TGG | + | chr6.1:616637-616656 | None:intergenic | 25.0% |
| !!! | CAAACATTCTTGCTTTATTT+TGG | - | chr6.1:615046-615065 | MS.gene82807:intron | 25.0% |
| !!! | CATTGTTTGGTTTTTTTGAT+TGG | - | chr6.1:614167-614186 | MS.gene82807:CDS | 25.0% |
| !!! | CTATGATGGCAATTTTATTT+GGG | + | chr6.1:616623-616642 | None:intergenic | 25.0% |
| !!! | GTTCTTTTGTAAGTTGAAAT+TGG | + | chr6.1:615787-615806 | None:intergenic | 25.0% |
| !!! | TTCAGAAATTTGTGTTACTT+TGG | - | chr6.1:614725-614744 | MS.gene82807:intron | 25.0% |
| !!! | TTTGAATTGTTTTGGTTACT+AGG | - | chr6.1:615265-615284 | MS.gene82807:intron | 25.0% |
| AAACAACATAAAGCAATCAG+AGG | - | chr6.1:615346-615365 | MS.gene82807:intron | 30.0% | |
| AACTAATAGTAACCTGTATC+TGG | + | chr6.1:616690-616709 | None:intergenic | 30.0% | |
| AATAGACAATCATTCATCTG+TGG | - | chr6.1:616001-616020 | MS.gene82807:intron | 30.0% | |
| ACAGATGAATGATTGTCTAT+TGG | + | chr6.1:616002-616021 | None:intergenic | 30.0% | |
| AGTTAAAACCAAACAAATCG+TGG | + | chr6.1:615119-615138 | None:intergenic | 30.0% | |
| ATGGAATCCATGGAATAAAA+AGG | - | chr6.1:616797-616816 | MS.gene82807:CDS | 30.0% | |
| ATTTGTCTGTATCAGATATC+AGG | - | chr6.1:616303-616322 | MS.gene82807:intron | 30.0% | |
| GAAAAGGGGCAATAATAATT+CGG | - | chr6.1:615153-615172 | MS.gene82807:CDS | 30.0% | |
| GATACAGGTTACTATTAGTT+AGG | - | chr6.1:616690-616709 | MS.gene82807:intron | 30.0% | |
| GTATAGACACTTTATGTTGA+AGG | - | chr6.1:616086-616105 | MS.gene82807:intron | 30.0% | |
| TAGTTGAATATCAGCAAGTT+TGG | + | chr6.1:615879-615898 | None:intergenic | 30.0% | |
| TTCATCACATACACAACATA+TGG | - | chr6.1:615403-615422 | MS.gene82807:intron | 30.0% | |
| TTGTGTAGCTCAACATAAAT+AGG | - | chr6.1:614663-614682 | MS.gene82807:CDS | 30.0% | |
| ! | TCTTTTGCTAGTGATCTTAA+TGG | - | chr6.1:614374-614393 | MS.gene82807:intron | 30.0% |
| ! | TTGTTTCTTGGAAGAATCAA+AGG | - | chr6.1:614983-615002 | MS.gene82807:intron | 30.0% |
| !! | ATTGTATTGACTGATCCAAA+TGG | - | chr6.1:614331-614350 | MS.gene82807:intron | 30.0% |
| !! | CATCTGAGTTTTTCAATTCT+AGG | + | chr6.1:615809-615828 | None:intergenic | 30.0% |
| !! | TGAGTAATTCAAGAGCATTA+AGG | - | chr6.1:614233-614252 | MS.gene82807:CDS | 30.0% |
| !! | TTCAAAGGCATCTGTATAAT+TGG | + | chr6.1:614280-614299 | None:intergenic | 30.0% |
| !!! | CTTTTGAAACATATGGTTTC+AGG | - | chr6.1:614939-614958 | MS.gene82807:intron | 30.0% |
| !!! | TTTGTTTGGTTTTAACTCTC+CGG | - | chr6.1:615122-615141 | MS.gene82807:CDS | 30.0% |
| AAACCATAAAGAACTCTACG+AGG | + | chr6.1:616984-617003 | None:intergenic | 35.0% | |
| AAGAATTCACTTCCAGATAC+AGG | - | chr6.1:616675-616694 | MS.gene82807:intron | 35.0% | |
| ACATATGATACATACCTTCG+TGG | + | chr6.1:616065-616084 | None:intergenic | 35.0% | |
| ATAATTCGGACTATCGAGTT+TGG | - | chr6.1:615167-615186 | MS.gene82807:CDS | 35.0% | |
| ATTACATTTGATGGAGAGGT+TGG | - | chr6.1:616506-616525 | MS.gene82807:intron | 35.0% | |
| CATTCTATGCTTACTTGCTT+TGG | - | chr6.1:614789-614808 | MS.gene82807:intron | 35.0% | |
| GATGAATGATTGTCTATTGG+AGG | + | chr6.1:615999-616018 | None:intergenic | 35.0% | |
| GCTCTTGAATTACTCACAAA+TGG | + | chr6.1:614229-614248 | None:intergenic | 35.0% | |
| GCTGATGCAATTACATTTGA+TGG | - | chr6.1:616497-616516 | MS.gene82807:intron | 35.0% | |
| GTTTATATTGAAGACGTGTC+TGG | + | chr6.1:615632-615651 | None:intergenic | 35.0% | |
| TAATCATCAACTCCCAAATC+AGG | + | chr6.1:616834-616853 | None:intergenic | 35.0% | |
| TACAACTTTGTGTTGCAGTT+TGG | - | chr6.1:615897-615916 | MS.gene82807:intron | 35.0% | |
| TATCTGGAAGTGAATTCTTC+TGG | + | chr6.1:616674-616693 | None:intergenic | 35.0% | |
| TCACATGGCTTCAAGATAAT+AGG | + | chr6.1:616897-616916 | None:intergenic | 35.0% | |
| TGCAATTACATTTGATGGAG+AGG | - | chr6.1:616502-616521 | MS.gene82807:intron | 35.0% | |
| TGTTAGTGCAAATGTTTGTC+CGG | + | chr6.1:615511-615530 | None:intergenic | 35.0% | |
| TTCTTGGAAGAATCAAAGGA+AGG | - | chr6.1:614987-615006 | MS.gene82807:intron | 35.0% | |
| TTTCTACTGAACAGGCTAAA+TGG | - | chr6.1:615323-615342 | MS.gene82807:intron | 35.0% | |
| ! | ATCATCATGCCTTAGCATTT+TGG | - | chr6.1:616352-616371 | MS.gene82807:intron | 35.0% |
| ! | GAATTTGTCCACGATTTGTT+TGG | - | chr6.1:615108-615127 | MS.gene82807:CDS | 35.0% |
| ! | TTATCAGTGTTTCTGACTCT+AGG | + | chr6.1:616248-616267 | None:intergenic | 35.0% |
| ! | TTTTCGGTTTACCTTGTAGA+CGG | - | chr6.1:616578-616597 | MS.gene82807:intron | 35.0% |
| !! | ACTTTGGCCTTTTTATTCCA+TGG | + | chr6.1:616807-616826 | None:intergenic | 35.0% |
| !! | TTTTAACTCTCCGGTTTCTT+GGG | - | chr6.1:615131-615150 | MS.gene82807:CDS | 35.0% |
| !!! | ACTACTTTTTATGAGCAGCA+AGG | - | chr6.1:615014-615033 | MS.gene82807:intron | 35.0% |
| AAGAAACAGGATGTGGTCAT+TGG | - | chr6.1:615953-615972 | MS.gene82807:intron | 40.0% | |
| AAGCCATGTGAAGAATGGAA+GGG | - | chr6.1:616906-616925 | MS.gene82807:CDS | 40.0% | |
| AAGCTATTGCAGTGGACAAT+TGG | - | chr6.1:616956-616975 | MS.gene82807:CDS | 40.0% | |
| CAACATAAAGCAATCAGAGG+AGG | - | chr6.1:615349-615368 | MS.gene82807:intron | 40.0% | |
| CACAAGGAATGACAAGAAAC+AGG | - | chr6.1:615940-615959 | MS.gene82807:intron | 40.0% | |
| GAAATAGAAGGCAAACGTGT+CGG | + | chr6.1:616124-616143 | None:intergenic | 40.0% | |
| GAATGACAAGAAACAGGATG+TGG | - | chr6.1:615946-615965 | MS.gene82807:intron | 40.0% | |
| GATCCTCGTAGAGTTCTTTA+TGG | - | chr6.1:616978-616997 | MS.gene82807:CDS | 40.0% | |
| GCCAAAGTTCTACCTGATTT+GGG | - | chr6.1:616819-616838 | MS.gene82807:CDS | 40.0% | |
| GGATCAGTCAATACAATCCT+TGG | + | chr6.1:614328-614347 | None:intergenic | 40.0% | |
| GTTTCATCAAGCTATTGCAG+TGG | - | chr6.1:616948-616967 | MS.gene82807:CDS | 40.0% | |
| TAGATCAAGATTCACTGAGC+AGG | - | chr6.1:616475-616494 | MS.gene82807:intron | 40.0% | |
| TCCCAAATCAGGTAGAACTT+TGG | + | chr6.1:616823-616842 | None:intergenic | 40.0% | |
| TCTTGAAGCCATGTGAAGAA+TGG | - | chr6.1:616901-616920 | MS.gene82807:CDS | 40.0% | |
| TGATTGTCTATTGGAGGTAG+TGG | + | chr6.1:615993-616012 | None:intergenic | 40.0% | |
| TTCAGGTGCTTCTATATGGA+GGG | - | chr6.1:614956-614975 | MS.gene82807:intron | 40.0% | |
| ! | ATGGAGGGCATATTGTTTCT+TGG | - | chr6.1:614971-614990 | MS.gene82807:intron | 40.0% |
| ! | ATGGGGATTTTCTACTGAAC+AGG | - | chr6.1:615315-615334 | MS.gene82807:intron | 40.0% |
| ! | CTTTATGTTGAAGGTGTGTC+TGG | - | chr6.1:616095-616114 | MS.gene82807:intron | 40.0% |
| ! | GTATATCAGCTTGCTTTGCA+CGG | - | chr6.1:615371-615390 | MS.gene82807:intron | 40.0% |
| ! | TAACACATCAAGAGCGTGTT+TGG | + | chr6.1:614635-614654 | None:intergenic | 40.0% |
| ! | TATATCAGCTTGCTTTGCAC+GGG | - | chr6.1:615372-615391 | MS.gene82807:intron | 40.0% |
| ! | TGGTTTCAGGTGCTTCTATA+TGG | - | chr6.1:614952-614971 | MS.gene82807:intron | 40.0% |
| ! | TTTCAGGTGCTTCTATATGG+AGG | - | chr6.1:614955-614974 | MS.gene82807:intron | 40.0% |
| !! | AAGACAAAGATGGATTGCCA+AGG | - | chr6.1:614308-614327 | MS.gene82807:CDS | 40.0% |
| !! | TTTTGATTGGTTGCAGAACC+TGG | - | chr6.1:614180-614199 | MS.gene82807:CDS | 40.0% |
| !!! | GTTTTAACTCTCCGGTTTCT+TGG | - | chr6.1:615130-615149 | MS.gene82807:CDS | 40.0% |
| AATGGTTCATCAGCTGAGGT+TGG | - | chr6.1:614349-614368 | MS.gene82807:intron | 45.0% | |
| ACCTCAGCTGATGAACCATT+TGG | + | chr6.1:614349-614368 | None:intergenic | 45.0% | |
| ATTGGTTGCAGAACCTGGAT+TGG | - | chr6.1:614185-614204 | MS.gene82807:CDS | 45.0% | |
| CAACACTATCACGACACAAG+TGG | + | chr6.1:615582-615601 | None:intergenic | 45.0% | |
| CTTCGCATATCTCTAAGTGC+TGG | - | chr6.1:616206-616225 | MS.gene82807:intron | 45.0% | |
| CTTTCACTCTTCTCCAATCC+AGG | + | chr6.1:614201-614220 | None:intergenic | 45.0% | |
| GAAGCCATGTGAAGAATGGA+AGG | - | chr6.1:616905-616924 | MS.gene82807:CDS | 45.0% | |
| GGCCAAAGTTCTACCTGATT+TGG | - | chr6.1:616818-616837 | MS.gene82807:CDS | 45.0% | |
| GTATACTCTGTCCGTCTACA+AGG | + | chr6.1:616592-616611 | None:intergenic | 45.0% | |
| GTGCAGTTGTATGGAATCCA+TGG | - | chr6.1:616787-616806 | MS.gene82807:CDS | 45.0% | |
| TAGCCCTTCCATTCTTCACA+TGG | + | chr6.1:616912-616931 | None:intergenic | 45.0% | |
| TCCAAATGGTTCATCAGCTG+AGG | - | chr6.1:614345-614364 | MS.gene82807:intron | 45.0% | |
| TCTCCGGTTTCTTGGGAAAA+GGG | - | chr6.1:615138-615157 | MS.gene82807:CDS | 45.0% | |
| TGCAGTGAAGTGCGTATTGA+GGG | - | chr6.1:616416-616435 | MS.gene82807:intron | 45.0% | |
| TTGACTTAAAGACGCCACGA+AGG | - | chr6.1:616048-616067 | MS.gene82807:intron | 45.0% | |
| TTTCAGTTAGGGCTCCAACT+TGG | - | chr6.1:615222-615241 | MS.gene82807:intron | 45.0% | |
| ! | CACTTGTGTCGTGATAGTGT+TGG | - | chr6.1:615580-615599 | MS.gene82807:intron | 45.0% |
| ! | CTATTGGAGGTAGTGGTGAA+GGG | + | chr6.1:615986-616005 | None:intergenic | 45.0% |
| ! | GTGATGAGAGTGCAGTTGTA+TGG | - | chr6.1:616778-616797 | MS.gene82807:CDS | 45.0% |
| ! | GTTGGTTCACTTGAGACACA+AGG | - | chr6.1:615924-615943 | MS.gene82807:intron | 45.0% |
| ! | TCTATTGGAGGTAGTGGTGA+AGG | + | chr6.1:615987-616006 | None:intergenic | 45.0% |
| !! | GTCGTGATAGTGTTGGTGTT+GGG | - | chr6.1:615587-615606 | MS.gene82807:intron | 45.0% |
| !! | GTGTTGCAGTTTGGTGATGT+TGG | - | chr6.1:615906-615925 | MS.gene82807:intron | 45.0% |
| !! | TCGTGATAGTGTTGGTGTTG+GGG | - | chr6.1:615588-615607 | MS.gene82807:intron | 45.0% |
| !! | TGTCGTGATAGTGTTGGTGT+TGG | - | chr6.1:615586-615605 | MS.gene82807:intron | 45.0% |
| AATGAAACACCGACAGACGC+CGG | - | chr6.1:615489-615508 | MS.gene82807:intron | 50.0% | |
| AATGTTTGTCCGGCGTCTGT+CGG | + | chr6.1:615501-615520 | None:intergenic | 50.0% | |
| CTCCGGTTTCTTGGGAAAAG+GGG | - | chr6.1:615139-615158 | MS.gene82807:CDS | 50.0% | |
| CTCTCCGGTTTCTTGGGAAA+AGG | - | chr6.1:615137-615156 | MS.gene82807:CDS | 50.0% | |
| GTGCAGTGAAGTGCGTATTG+AGG | - | chr6.1:616415-616434 | MS.gene82807:intron | 50.0% | |
| TGAAGTGCGTATTGAGGGAC+TGG | - | chr6.1:616421-616440 | MS.gene82807:intron | 50.0% | |
| TGTTGGGGACTGTCATGTGT+CGG | - | chr6.1:615603-615622 | MS.gene82807:intron | 50.0% | |
| ! | TGCCCCTTTTCCCAAGAAAC+CGG | + | chr6.1:615144-615163 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 614130 | 617010 | 614130 | ID=MS.gene82807 |
| chr6.1 | mRNA | 614130 | 617010 | 614130 | ID=MS.gene82807.t1;Parent=MS.gene82807 |
| chr6.1 | exon | 616774 | 617010 | 616774 | ID=MS.gene82807.t1.exon1;Parent=MS.gene82807.t1 |
| chr6.1 | CDS | 616774 | 617010 | 616774 | ID=cds.MS.gene82807.t1;Parent=MS.gene82807.t1 |
| chr6.1 | exon | 616105 | 616179 | 616105 | ID=MS.gene82807.t1.exon2;Parent=MS.gene82807.t1 |
| chr6.1 | CDS | 616105 | 616179 | 616105 | ID=cds.MS.gene82807.t1;Parent=MS.gene82807.t1 |
| chr6.1 | exon | 615747 | 615803 | 615747 | ID=MS.gene82807.t1.exon3;Parent=MS.gene82807.t1 |
| chr6.1 | CDS | 615747 | 615803 | 615747 | ID=cds.MS.gene82807.t1;Parent=MS.gene82807.t1 |
| chr6.1 | exon | 615071 | 615225 | 615071 | ID=MS.gene82807.t1.exon4;Parent=MS.gene82807.t1 |
| chr6.1 | CDS | 615071 | 615225 | 615071 | ID=cds.MS.gene82807.t1;Parent=MS.gene82807.t1 |
| chr6.1 | exon | 614816 | 614947 | 614816 | ID=MS.gene82807.t1.exon5;Parent=MS.gene82807.t1 |
| chr6.1 | CDS | 614816 | 614947 | 614816 | ID=cds.MS.gene82807.t1;Parent=MS.gene82807.t1 |
| chr6.1 | exon | 614617 | 614719 | 614617 | ID=MS.gene82807.t1.exon6;Parent=MS.gene82807.t1 |
| chr6.1 | CDS | 614617 | 614719 | 614617 | ID=cds.MS.gene82807.t1;Parent=MS.gene82807.t1 |
| chr6.1 | exon | 614444 | 614543 | 614444 | ID=MS.gene82807.t1.exon7;Parent=MS.gene82807.t1 |
| chr6.1 | CDS | 614444 | 614543 | 614444 | ID=cds.MS.gene82807.t1;Parent=MS.gene82807.t1 |
| chr6.1 | exon | 614130 | 614347 | 614130 | ID=MS.gene82807.t1.exon8;Parent=MS.gene82807.t1 |
| chr6.1 | CDS | 614130 | 614347 | 614130 | ID=cds.MS.gene82807.t1;Parent=MS.gene82807.t1 |
| Gene Sequence |
| Protein sequence |
