AlfalfaGEDB | MS.gene21644

M. sativa cultivar XinJiangDaYe / MS.gene21644

KEGG: K01792
GO: GO:0003674 GO:0003824 GO:0005488 GO:0005975 GO:0008150 GO:0008152 GO:0016853 GO:0030246 GO:0044238 GO:0071704
PFAM: PF01263.23

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21644.t1	XP_003611029.1	99	304	3	0	1	304	1	304	2.10E-175	624.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21644.t1	Q40784	66.3	291	96	1	16	304	25	315	1.2e-118	427.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21644.t1	G7KAP1	99.0	304	3	0	1	304	1	304	1.5e-175	624.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene21644	0.867966	9.26E-66	-1.69E-46
MS.gene049222	MS.gene21644	0.831372	1.73E-55	-1.69E-46
MS.gene049285	MS.gene21644	0.808632	2.82E-50	-1.69E-46
MS.gene049609	MS.gene21644	0.849504	3.10E-60	-1.69E-46
MS.gene049805	MS.gene21644	0.849966	2.30E-60	-1.69E-46
MS.gene050593	MS.gene21644	0.817547	3.12E-52	-1.69E-46
MS.gene050747	MS.gene21644	0.853061	3.06E-61	-1.69E-46
MS.gene050772	MS.gene21644	0.839645	1.40E-57	-1.69E-46
MS.gene050950	MS.gene21644	0.845496	3.92E-59	-1.69E-46
MS.gene05105	MS.gene21644	0.824366	8.39E-54	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene028526	MS.gene21644	PPI
MS.gene060400	MS.gene21644	PPI
MS.gene21644	MS.gene82807	PPI
MS.gene21644	MS.gene024472	PPI
MS.gene21644	MS.gene40102	PPI
MS.gene21644	MS.gene025937	PPI
MS.gene21644	MS.gene037013	PPI
MS.gene21644	MS.gene053627	PPI
MS.gene21644	MS.gene90270	PPI
MS.gene21644	MS.gene053078	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21644.t1	MTR_5g009670	99.013	304	3	0	1	304	1	304	0.0	625
MS.gene21644.t1	MTR_5g009670	99.194	248	2	0	1	248	1	248	0.0	511
MS.gene21644.t1	MTR_4g092780	71.803	305	84	2	1	304	1	304	1.89e-165	462
MS.gene21644.t1	MTR_7g116910	69.836	305	90	2	1	304	1	304	3.15e-165	462
MS.gene21644.t1	MTR_2g036810	67.241	290	93	1	17	304	14	303	1.18e-152	430
MS.gene21644.t1	MTR_4g005740	66.667	285	93	1	22	304	15	299	5.05e-146	413
MS.gene21644.t1	MTR_6g004520	54.138	290	130	3	15	304	3	289	4.01e-115	334
MS.gene21644.t1	MTR_6g004520	54.138	290	130	3	15	304	61	347	9.04e-115	335
MS.gene21644.t1	MTR_6g004520	54.138	290	130	3	15	304	50	336	1.75e-114	334
MS.gene21644.t1	MTR_5g020640	33.218	289	174	7	15	301	41	312	5.82e-43	150

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21644.t1	AT4G23730	69.608	306	91	2	1	304	1	306	1.13e-165	462
MS.gene21644.t1	AT3G61610	74.483	290	73	1	16	304	15	304	6.52e-165	461
MS.gene21644.t1	AT3G61610	74.483	290	73	1	16	304	9	298	7.22e-165	461
MS.gene21644.t1	AT4G23730	68.269	312	91	3	1	304	1	312	5.78e-163	456
MS.gene21644.t1	AT4G23730	73.881	268	68	2	39	304	4	271	1.60e-154	433
MS.gene21644.t1	AT5G57330	67.698	291	92	1	16	304	9	299	2.79e-154	434
MS.gene21644.t1	AT3G01590	60.000	285	112	2	20	304	8	290	6.11e-130	372
MS.gene21644.t1	AT3G01590	60.000	285	112	2	20	304	8	290	6.11e-130	372
MS.gene21644.t1	AT5G14500	57.586	290	121	2	15	304	3	290	8.30e-130	372
MS.gene21644.t1	AT5G14500	53.016	315	121	3	15	304	3	315	1.36e-123	357

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Find 75 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCGGGAGAAGAATGGAC+CGG	0.609197	5.2:-3267694	MS.gene21644:CDS
AAATCCGATAACCTTAAAAC+CGG	0.461715	5.2:-3267710	MS.gene21644:CDS
AAATCCTCCACCACTGCCCA+CGG	0.590093	5.2:-3268972	MS.gene21644:CDS
AACAGAAAGCTCCAAGCGGC+CGG	0.541122	5.2:+3267675	None:intergenic
AACATCAGTTGAAGTTATCA+AGG	0.479030	5.2:-3269671	MS.gene21644:CDS
AAGCAAATGCTCTGCGTGGA+TGG	0.557893	5.2:-3267745	MS.gene21644:CDS
AAGGAACGCTTCACAGAACA+AGG	0.595906	5.2:-3268204	MS.gene21644:CDS
AAGGAAGGTCTTCCAGATGT+TGG	0.585878	5.2:-3267970	MS.gene21644:intron
AAGGCTTGCCATTGACATTC+CGG	0.382320	5.2:+3268516	None:intergenic
AATAGTTGTTTGGAATCCCT+GGG	0.525696	5.2:-3267812	MS.gene21644:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATCCGATAACCTTAAAAC+CGG	-	chr5.2:3269656-3269675	MS.gene21644:CDS	30.0%
AACATCAGTTGAAGTTATCA+AGG	-	chr5.2:3267695-3267714	MS.gene21644:CDS	30.0%
AATGTGTAAATTGACATGGA+TGG	+	chr5.2:3269533-3269552	None:intergenic	30.0%
AGCACCAATCAAATTCAAAA+GGG	+	chr5.2:3267825-3267844	None:intergenic	30.0%
ATCTTGAGAATTGAGATTGT+TGG	-	chr5.2:3268728-3268747	MS.gene21644:intron	30.0%
ATTTCTCCATATCAGATATC+AGG	-	chr5.2:3268900-3268919	MS.gene21644:CDS	30.0%
ATTTCTCTCTCTTTCCAATT+AGG	-	chr5.2:3268153-3268172	MS.gene21644:intron	30.0%
CAAAAAAACCTCATTTACCT+TGG	+	chr5.2:3267943-3267962	None:intergenic	30.0%
GAAGTTATCAAGGACAAAAA+TGG	-	chr5.2:3267705-3267724	MS.gene21644:CDS	30.0%
GATTTGCAAGGAATAAGATA+TGG	-	chr5.2:3268360-3268379	MS.gene21644:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.2	gene	3267660	3269728	3267660	ID=MS.gene21644
chr5.2	mRNA	3267660	3269728	3267660	ID=MS.gene21644.t1;Parent=MS.gene21644
chr5.2	exon	3269615	3269728	3269615	ID=MS.gene21644.t1.exon1;Parent=MS.gene21644.t1
chr5.2	CDS	3269615	3269728	3269615	ID=cds.MS.gene21644.t1;Parent=MS.gene21644.t1
chr5.2	exon	3269444	3269518	3269444	ID=MS.gene21644.t1.exon2;Parent=MS.gene21644.t1
chr5.2	CDS	3269444	3269518	3269444	ID=cds.MS.gene21644.t1;Parent=MS.gene21644.t1
chr5.2	exon	3269157	3269213	3269157	ID=MS.gene21644.t1.exon3;Parent=MS.gene21644.t1
chr5.2	CDS	3269157	3269213	3269157	ID=cds.MS.gene21644.t1;Parent=MS.gene21644.t1
chr5.2	exon	3268899	3269059	3268899	ID=MS.gene21644.t1.exon4;Parent=MS.gene21644.t1
chr5.2	CDS	3268899	3269059	3268899	ID=cds.MS.gene21644.t1;Parent=MS.gene21644.t1
chr5.2	exon	3268467	3268601	3268467	ID=MS.gene21644.t1.exon5;Parent=MS.gene21644.t1
chr5.2	CDS	3268467	3268601	3268467	ID=cds.MS.gene21644.t1;Parent=MS.gene21644.t1
chr5.2	exon	3268179	3268281	3268179	ID=MS.gene21644.t1.exon6;Parent=MS.gene21644.t1
chr5.2	CDS	3268179	3268281	3268179	ID=cds.MS.gene21644.t1;Parent=MS.gene21644.t1
chr5.2	exon	3267971	3268070	3267971	ID=MS.gene21644.t1.exon7;Parent=MS.gene21644.t1
chr5.2	CDS	3267971	3268070	3267971	ID=cds.MS.gene21644.t1;Parent=MS.gene21644.t1
chr5.2	exon	3267660	3267829	3267660	ID=MS.gene21644.t1.exon8;Parent=MS.gene21644.t1
chr5.2	CDS	3267660	3267829	3267660	ID=cds.MS.gene21644.t1;Parent=MS.gene21644.t1

Gene Sequence

>MS.gene21644

ATGAATCATTCTGGAGCTGAAAGTGATCATAAAATAACATCAGTTGAAGTTATCAAGGACAAAAATGGAATAGAACAAGTTGTTCTTCGAAACGTTCGAGGAGCTTCAGCAACGGTTACATTTTCTCAACTCTTTCAATTTCAATTTCAACTACCGCATCTACCCTTTTGAATTTGATTGGTGCTAGCGTTGTGTGTGTGACTTTTTCAGGTTAGCTTGCACGGAGGGCAAGTTCTTTCATGGAAAACAGAACGCGGTGAAGAGTTATTGTTCACTAGTACCAAGGTAAATGAGGTTTTTTTGTGCCAGTTATTTCCTATGTAGCACTGACACTTCGAATTAAAGGCATGTCCGGTCACTTCTATGATTGGTGTTTATGTGTCCAGTATCAGTGCTGTGTCTGATATATGTGATAGTGATTCGTAGGTTATTTCTCGACAATATTACCAATTAACCTTAATTTTGTTTGTAAAATGTAACAAATTTTTATGACATTTCTCTCTCTTTCCAATTAGGCCGTCTATACTCCTCCAAAACCAGTACGAGGAGGAATCCCAATCTGTTTTCCACAGGTAATTTTAGATAGTAGTACTATTTATATAACACCTGAATTACAGAAATCTATATAGATAGATAGATAATAAGGTTGGTTGGTGTGATTTATTTTAGTTTGGAAACCGTGGAACACTAGAGCAACATGGATTTGCAAGGAATAAGATATGGGTTATCGATCAAAATCCTCCACCACTGCCCACGGATTCAAATGGAAAAGCTTGCATCGACTTGCTGCTCAAACCATCTGAAGACGATATGAAGATATGGCCACATAGGTGCGACGCGCTTTATCTTCTATACTTTACTAACATCACAACCAGCATTTTACTTATGAATTTGGGGGACTGAGAAGAATAACTGAGATAAATTGAGAGGCTATATATAGAACTATTAAAGGACTATTGGCTTGAGAATCCTTACAAAGAAAAATGAATCGCATCCAAGAGAGGAGAAATCCCAAAAGCATGTAGCTAGATACCCCAGTTCCTATATAATAACAAGTATATTTCATGTATCTTGAGAATTGAGATTGTTGGATGACAATGTTTTATGTACTAAATTATTTTATTCAGCTTCGAGTTTCGCCTAAGGGTCTGTTTGGCAGCAGATGGCCGTCTGAATATGATATCTCGCATCCGGAATGTCAATGGCAAGCCTTTCAGTTTCTCCTTTGCATTTCATACATATTTCTCCATATCAGATATCAGGTCCGTATGCCATTCCAACACTTTCAAGATAAGATCAAGATCAATTATTTTATCAAGGAATCAATCTGTTCTGAAAGATTAATTTCTTTTCACAAGTCCTTTTGTTCGTTTTTAAATTTTATAAAGTTGCAAAAAGTTGCATATAAGTTTTTAAGTTAACCTTAACTTTTGCCGATTATTGACAGTGAAGTGAGGGTAGAAGGGTTGGAGACTCTTGACTACCTGGATAACCTATACCAGAAGGAACGCTTCACAGAACAAGGAGATGCTTTAACATTTGAATCTGAGGTGAGGAAATTGATGATTTTAATTCAAGTTCATCCTTATATTTATCAAGTTAAATTAATCTGCAACCCTTGAAATTTTACCAACATGCTAAGGTCTTATTTGTGTTAGGTGGATCGAGTTTATCTCGATTCTAGCAGTATGGTAGCCGTTCTAGATCATGAGAAGAAACGAACATTTGTGATACGAAAGGAAGGTCTTCCAGATGTTGGTAAGTGTCTTTCATTCTAAACAAATGACATTTCCGACTCAAAATCTAAGTACTATAATTGGAAAAACTTCTGTTATTTCATTACACAAACATGAAAGATAACTAAAACTAACCATCCATGTCAATTTACACATTGAATAGTTGTTTGGAATCCCTGGGAGAAAAAATCAAAGTCAATAGTGGATTTTGGGGATGAGGAGTACAAGCAAATGCTCTGCGTGGATGGTGCAGCAGTTGGAAATCCGATAACCTTAAAACCGGGAGAAGAATGGACCGGCCGCTTGGAGCTTTCTGTTGTACCTTCTACTTGA

Protein sequence

>MS.gene21644.t1

MNHSGAESDHKITSVEVIKDKNGIEQVVLRNVRGASATVSLHGGQVLSWKTERGEELLFTSTKAVYTPPKPVRGGIPICFPQFGNRGTLEQHGFARNKIWVIDQNPPPLPTDSNGKACIDLLLKPSEDDMKIWPHSFEFRLRVCLAADGRLNMISRIRNVNGKPFSFSFAFHTYFSISDISEVRVEGLETLDYLDNLYQKERFTEQGDALTFESEVDRVYLDSSSMVAVLDHEKKRTFVIRKEGLPDVVVWNPWEKKSKSIVDFGDEEYKQMLCVDGAAVGNPITLKPGEEWTGRLELSVVPST