AlfalfaGEDB | MS.gene060400

M. sativa cultivar XinJiangDaYe / MS.gene060400

KEGG: K01792
GO: GO:0003674 GO:0003824 GO:0005488 GO:0005975 GO:0008150 GO:0008152 GO:0016853 GO:0030246 GO:0044238 GO:0071704
PFAM: PF01263.23

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060400.t1	XP_003594970.1	98.7	319	3	1	1	319	1	318	2.00E-168	601.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060400.t1	Q40784	72.7	304	83	0	15	318	26	329	2.6e-132	473.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060400.t1	G7IN18	98.7	319	3	1	1	319	1	318	1.5e-168	601.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene060400	0.807484	4.94E-50	-1.69E-46
MS.gene050361	MS.gene060400	0.818143	2.29E-52	-1.69E-46
MS.gene050556	MS.gene060400	0.818383	2.02E-52	-1.69E-46
MS.gene050762	MS.gene060400	0.805226	1.48E-49	-1.69E-46
MS.gene050763	MS.gene060400	0.803342	3.65E-49	-1.69E-46
MS.gene052609	MS.gene060400	0.836727	7.90E-57	-1.69E-46
MS.gene052776	MS.gene060400	0.811817	5.79E-51	-1.69E-46
MS.gene052932	MS.gene060400	0.834625	2.69E-56	-1.69E-46
MS.gene052994	MS.gene060400	0.800056	1.72E-48	-1.69E-46
MS.gene053167	MS.gene060400	0.800176	1.63E-48	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene060400	MS.gene032655	PPI
MS.gene060400	MS.gene072750	PPI
MS.gene060400	MS.gene21644	PPI
MS.gene060400	MS.gene82807	PPI
MS.gene060400	MS.gene028526	PPI
MS.gene060400	MS.gene024472	PPI
MS.gene060400	MS.gene40102	PPI
MS.gene060400	MS.gene025937	PPI
MS.gene060400	MS.gene024663	PPI
MS.gene060400	MS.gene053627	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060400.t1	MTR_2g036810	99.060	319	2	1	1	319	1	318	0.0	652
MS.gene060400.t1	MTR_4g005740	76.254	299	71	0	18	316	13	311	0.0	503
MS.gene060400.t1	MTR_5g009670	67.347	294	94	1	11	304	13	304	1.75e-155	437
MS.gene060400.t1	MTR_4g092780	65.781	301	100	2	15	314	16	314	3.11e-151	427
MS.gene060400.t1	MTR_7g116910	65.116	301	102	2	15	314	16	314	4.41e-151	427
MS.gene060400.t1	MTR_6g004520	60.535	299	113	4	20	318	10	303	4.59e-129	370
MS.gene060400.t1	MTR_6g004520	60.535	299	113	4	20	318	68	361	6.55e-129	372
MS.gene060400.t1	MTR_6g004520	60.535	299	113	4	20	318	57	350	2.62e-128	370
MS.gene060400.t1	MTR_5g009670	65.966	238	79	1	11	248	13	248	2.35e-120	346
MS.gene060400.t1	MTR_5g020640	34.146	287	168	7	15	299	43	310	1.09e-41	147

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060400.t1	AT5G57330	78.205	312	68	0	6	317	1	312	0.0	529
MS.gene060400.t1	AT3G61610	65.667	300	100	2	15	313	16	313	4.57e-151	427
MS.gene060400.t1	AT3G61610	65.667	300	100	2	15	313	10	307	5.25e-151	426
MS.gene060400.t1	AT3G01590	63.880	299	104	3	20	318	10	304	3.08e-143	406
MS.gene060400.t1	AT3G01590	63.880	299	104	3	20	318	10	304	3.08e-143	406
MS.gene060400.t1	AT5G14500	63.211	299	106	3	20	318	10	304	7.60e-142	403
MS.gene060400.t1	AT4G23730	63.356	292	103	3	15	304	17	306	2.93e-140	399
MS.gene060400.t1	AT4G23730	62.416	298	102	4	15	304	17	312	3.03e-138	394
MS.gene060400.t1	AT5G14500	58.333	324	106	4	20	318	10	329	8.40e-136	389
MS.gene060400.t1	AT4G23730	64.207	271	93	3	36	304	3	271	8.28e-133	379

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Find 84 sgRNAs with CRISPR-Local

Find 327 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTGGAGAAGAATGGAA+AGG	0.623143	2.1:+53542071	MS.gene060400:CDS
AAAGATGGCCTTCCTGATGC+TGG	0.515378	2.1:+53541428	MS.gene060400:CDS
AAAGTCTATGGCTGATTTCG+GGG	0.626184	2.1:+53541986	MS.gene060400:CDS
AAATTATTTGTTGGAAAAGG+AGG	0.527511	2.1:-53539236	None:intergenic
AAGCCTCCTAAGGCTATTCG+TGG	0.556125	2.1:+53538074	MS.gene060400:CDS
AAGGAGCGCTTTACTGAACA+GGG	0.674715	2.1:+53540597	MS.gene060400:CDS
AAGGCTATCACTTTGAAACC+TGG	0.573783	2.1:+53542056	MS.gene060400:CDS
ACATGAAGATCTGGAATCAC+AGG	0.534377	2.1:+53539303	MS.gene060400:CDS
ACATGGATTTGCTAGAAATC+GGG	0.458820	2.1:+53539190	MS.gene060400:CDS
ACCAGTGGTGTGGAATCCTT+GGG	0.429036	2.1:+53541953	MS.gene060400:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGATATTCAAGTGAGACT+TGG	-	chr2.1:53541704-53541723	None:intergenic	30.0%
AATTATTCTAGATTCCGATC+TGG	+	chr2.1:53536933-53536952	MS.gene060400:intron	30.0%
ACCAAGTAGTCAACATATTA+GGG	+	chr2.1:53538468-53538487	MS.gene060400:intron	30.0%
ACTTTCCTTGTATTGTTACT+TGG	-	chr2.1:53541636-53541655	None:intergenic	30.0%
AGCAACAATTCTAGATATCT+AGG	+	chr2.1:53538771-53538790	MS.gene060400:intron	30.0%
AGTTTAATGTTGCGATTTAG+AGG	-	chr2.1:53538701-53538720	None:intergenic	30.0%
ATATCTTTGAATGCCTTGAT+TGG	+	chr2.1:53541716-53541735	MS.gene060400:intron	30.0%
ATCATTTCAAGAAAAAGGGA+AGG	-	chr2.1:53541328-53541347	None:intergenic	30.0%
ATGGATCAAGAACAGAAAAA+CGG	-	chr2.1:53536864-53536883	None:intergenic	30.0%
CAAAACATTTACCCTTAATC+CGG	-	chr2.1:53537912-53537931	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	53536741	53542172	53536741	ID=MS.gene060400
chr2.1	mRNA	53536741	53542172	53536741	ID=MS.gene060400.t1;Parent=MS.gene060400
chr2.1	exon	53536741	53536848	53536741	ID=MS.gene060400.t1.exon1;Parent=MS.gene060400.t1
chr2.1	CDS	53536741	53536848	53536741	ID=cds.MS.gene060400.t1;Parent=MS.gene060400.t1
chr2.1	exon	53537150	53537224	53537150	ID=MS.gene060400.t1.exon2;Parent=MS.gene060400.t1
chr2.1	CDS	53537150	53537224	53537150	ID=cds.MS.gene060400.t1;Parent=MS.gene060400.t1
chr2.1	exon	53538065	53538121	53538065	ID=MS.gene060400.t1.exon3;Parent=MS.gene060400.t1
chr2.1	CDS	53538065	53538121	53538065	ID=cds.MS.gene060400.t1;Parent=MS.gene060400.t1
chr2.1	exon	53539164	53539324	53539164	ID=MS.gene060400.t1.exon4;Parent=MS.gene060400.t1
chr2.1	CDS	53539164	53539324	53539164	ID=cds.MS.gene060400.t1;Parent=MS.gene060400.t1
chr2.1	exon	53539469	53539609	53539469	ID=MS.gene060400.t1.exon5;Parent=MS.gene060400.t1
chr2.1	CDS	53539469	53539609	53539469	ID=cds.MS.gene060400.t1;Parent=MS.gene060400.t1
chr2.1	exon	53540542	53540644	53540542	ID=MS.gene060400.t1.exon6;Parent=MS.gene060400.t1
chr2.1	CDS	53540542	53540644	53540542	ID=cds.MS.gene060400.t1;Parent=MS.gene060400.t1
chr2.1	exon	53541350	53541449	53541350	ID=MS.gene060400.t1.exon7;Parent=MS.gene060400.t1
chr2.1	CDS	53541350	53541449	53541350	ID=cds.MS.gene060400.t1;Parent=MS.gene060400.t1
chr2.1	exon	53541958	53542172	53541958	ID=MS.gene060400.t1.exon8;Parent=MS.gene060400.t1
chr2.1	CDS	53541958	53542172	53541958	ID=cds.MS.gene060400.t1;Parent=MS.gene060400.t1

Gene Sequence

>MS.gene060400

ATGAATAACGAAAAGCTTTCTTCTTCTTCTTCTTCCTTTACGTTAACCAAAGGTATCAATGGTCTCGATAAGGTTCTTCTTCGTGAATCTCGTGGCGCTTCCGCTGAGGTATAATCATAACCGTTTTTCTGTTCTTGATCCATGTAATTCAAATCTTGATTCACTTTCATCGCTTTAGATTTCACCGATTTCAATTATTCTAGATTCCGATCTGGTTAGGTATATTTCGATTTAGATCTTGTTTTTTTGTTTTTGCTTCATTAATCGTTGTTAATTAACGGAAGATTCTCGATCTAACTCATGCACTGATTTTAAATTTGACTGTGAAATTTAGAAGGAGGAAGAAGAAAAAGGAAAATAATCGATTATGTTTTTATGATTTTTGATGCATTTTGTTTGTGATTTGTAGATTTATCTGTACGGTGGACATGTGACTTCGTGGAAGAATGATCATGCTGAGGAATTGCTTTTTCTCAGTAGTAAGGTTTGTGATTTCGAATTTACGAAACTGTGTTTGTTTTGGTTGATTTTAGTATTTTTTAGTGTTGGTGCATTAATTTAGTTGCCGAGTTTGTTGGTGAAAAATTTTCTATCGAAAAGGAAAATGAAAGAGTTCGTTGTCGATAATTTTCTATCGAAAAGGAAAATGAAAAATAGAGTTAACTGTATTCTTTTTTAGATCACGGTTCTAAATTGTGGCCGCGAACTTTGATATCATGGGTAAATGCAGTTGACGCGCCTTTTTTTGTTGTTGTTGTTGTAATCTACGCGCTTTAAAACCTTTATGTTGTAGTTGTAGACCGCAATTTAGTATTATGATATAGATCTCGTTAGTTTGTGAAGTTCAATTTTGCTATGTAAGTGACAGTTTATACAGTGAGTGATCATTAGAAGTGATTTGACTTCGATTAATTAGAGTATCTTTAGGTAGTTTGAGATCTTGATTCACTTTTAAAGAAAATTAATATCAAACTTTATCTTCTAACCGACAATGAAGCATTGTATGTATCGGTGTCAAACGCCGGACACACATCCCATTAGAAGTGTCGGTTCTACAGAGCTAACTAATTAAAATTGGCTTCAAAATGAACGGGTTTCTATCTTGCTTTCAAAACAATGTAAAATGTATGAATTCCTGATATTAATATTTGCTTCAATGGCAGTTAATCCGGATTAAGGGTAAATGTTTTGATAGTTTTTTTTTTTTTTGTTTTTGTGTGTGTGTGACTATAGTTTTGAAAAATTTAACCTCCAGCTTTCATGTTGATTAGATGATTGATATATGGTCAATGTCTGTTTGATTATTATCTTGTTCCTTGTGCAGGCTATCTTTAAGCCTCCTAAGGCTATTCGTGGAGGGATTCCAATATGCTTTCCACAAGTATGTACTTACTATTTCCTTTTTATTTTTTTTGACAATTCTTAACTGTTTCTGTTTTCCTTAGAGATGAGAGGTGAAAGGCTCCTAAAACTTAAACTCTGACTTTAAATTTGATATGTTCCACAAATATAAATCCTAGCTTATTACATTCCTGTGAGAAAATTAAATTCGATAGCATAAGTCGTATTGAAGAAGGGGTGGGGGTGGGTTCAGGGTTAGTTTAGTCGCTGCTTGATGCCTTGATTTGATTTTGTTGGATCACACAACCCTACAAAGAGAGCAGCTCACTGCCGTTTTGAGAACTGGCATATTACACACTCAGACAGTTAGACTTGTCACATAGTTGACCAAGTAGTCAACATATTAGGGTCCAAGTTAGATAACTAGCCTCTACTTAGAGTAGTTAACAACAATGTTAATTGAGGGTCTATGTAAGATTGGGAGGGGGTTGAAAGATTGAAACTCGAGGATTGTAGCACGGATCGTAAGATCCTACCAACAGGGAAAAAGTGTATGTGCGTGTGTATTAAATTTTATACATATGTGCATACAAGTTATTATGGATAAAGAAAATAACCTCTAAATCGCAACATTAAACTAAGTTCATTAATAACTCAAAAAACTATGTTCAAAATGAATCCAATCTAGAAGCAACAATTCTAGATATCTAGGAAGTTATCCAATATAGTCGTCTTCATCCTCTTGGAAGTGAAACAGAGGATGAAATTACTGAAAACAGAGGAACCACCGCGCCGCATAGAGGAAACCAAGATAATGAAAACTTTCTTTTTAAAAATTTTCCTTCTAGATTTCACTGCTGTCTCTTTATCAAACTATATCTGCTATCATATCGATATCCCAAGAAACAACGAAACCAATAGAAATTGATATAATACCAATAGAAATTGATATAATTAATGAAAACTATATGATATATTTCTGAAAATAATTACAATTTCTAAATGGTGTTCTAGAACTTGTGTTTGTTGTTATCATCACACTCCAGATGACATGGTGATGGAAATTTTCTATCTATTTGCAGTTTGCAAACCATGGAAACTTGGAATCACATGGATTTGCTAGAAATCGGGTTTGGGCCATTGAAGATGACCCTCCTCCTTTTCCAACAAATAATTTGAGCAAAGCCTTTGTTGATTTGATTCTTAAACCCTCTGAAGAAGACATGAAGATCTGGAATCACAGGTATCTATAGAATACTTTCAGAAAATTTTTACAATTTTTTTTAATACCTGGTGTAACTTTAATATCTTCATTCATAGTTAAAGTTGTTGTATACTTATATTATGTTTCTTTCTGATTATTATACACATTTCTTTTTGAATGTAGTTTTGAGTACCGTCTGAGGGTAGCTTTGGGACCCGGAGGAGATTTGATGTTGACATCTCGGATTCGGAACACAAACAGTGATGGGAAGCCATTTTCGTTCACATTTGCTTATCATACTTATTTTTCGGTATCAGACATAAGGTAAGTGCTTGAATATGTTCATCTCACACTTCAACATCGCTGTTTAGTATTAACTGGTTTTATTTGTAACATTGTTGTTACATTTAACAACTTGCTTTTTGTTTGTTTTGTAACCATGGTTAGGCTACTTTCACCAACAACATTTCATTAATTTTAAAATTCAAATTAATATACTATTAATTGGTGAATTTGTAACTAAAGATTTAACAGCTGAATTTATAATAGAAAGGACCTCAAACTCAAAGCATTATTGCCGGGGTTTTTTATTTGGTGGCACGGGCAAGAGCGAGTTTATAGCTTTATTATACTGAAAATACATTTTTTTTTTTTTTTTTGTATAGCTCAAGGGCTTTAAGTGGTCCTTATTTGGTCAAACCTCACTTAGTCTGATAAGGTTTAGTTGTCGTATCTTTTGGTTGAAATCTAGTTCAAGAGGCATGTACTGAACTATGCTATGATTGGCAATTTGGTGTTAACTTTTTCTCTGATTTATGAAAAATCATTTACTTTTCCTTCATGTGGGCAGTTGTACTTGTAGTGTAGTTGTGTCAAATCTGAAAGTTGGCTCTGAACTTACAAAAACAAGTGTGGATTTTTGTACATGATGGTGCAGAGTGTGGAAATGCAAATTTTTGTAGTGTGCTGATGTTGAAACAATATGCTTCTGTAATTTGTTGAATGAAATTTGTAGCTTGCTAATTCGGTTACTTTGTTTAGTTAAATTTAGTCATGTTGTGAAATATTTAAGTTTAGTTTTATTTCCCAACTCAGTTAGTGGAGTTAAAGACTGTGGTATCTACCTACATATGTTTCTTGCTTTTATCTATCCACATATATTTCTTGTTCTTTTTAGCTTTACTTTCTAAAAATTGGTTGTGGTATTAATGAATGTTTAGATAGAGTGCCTAACTGGTTTATTTGCATGTGTTCAGTGAAGTTCGGGTAGAGGGATTAGAGACCTTGGATTATCTTGACAACTTGCAGAACAAGGAGCGCTTTACTGAACAGGGAGATGCTTTGACTTTTGAATCAGAAGTAAGTCTGGGTTTTCCCTTCTATTTAGTTTCAGGTTAAGAGATGCTGGTTTTATAGGACATGAACAAAATTCATTTGACTGAAATAAATGGAATATTACCTTTCATTTGAATAACTTTTTTTTTGAAAAAAAGGAGCGAGAACCGCTTGTTATGTGAAATATTGAAACAATATATAGTTCCTGAAAAGGCTTTTCATTTTTTCATTGTTCATAAAATTTATTTTTCCTATTGATGAATTCATACCAAAAGTGTGCACTGGTTGCTATTTTTCATTTGCAGAAACAATATCACATTTGCTTCTTCTCCATCCTATACTCCCCCACTGTCGGCTTTATCTTTCCTCTGCGTTTTCTTGCTTATATTTTATGTTTAATTTACTATTTTACCCCTTTATTCTATACTTATTCTGTAATAGGGGTAGGCCTTGCCCAATATGCGCTGGTTGATACCATGCCACCCACTTCATATCTGGGCATTGGTTGTACCCAACCTATATCTGAATGAAACATGTCTTCACATTAACTAAAATTAACACAAAAAAGTAAAGTTCATGTATCTGACCTGTATTTTTCTAAACTCTAATACTTTATTCTGTTCACATGTGTGTAGCTAATATGTTTCACAGGTTTTTTTTTTTGAGGAAATGTTTCACAGGTTTTTTGTTGGTTATAAGCTGATCCTTCCCTTTTTCTTGAAATGATAGGTTGATAAGATATATCTTAGTACTCCTACAAAGATTGCAATCATTGATCATGAAAAAAAGAGGACATTTGTTTTGCGTAAAGATGGCCTTCCTGATGCTGGTCAGTACTATCTTACTTATCTTCATCAATCTGTACACGTACTTCATAGATGTGTAAATATAAAAGAACAGATAAGGTAGAGTGAAAAGTCAGATTTCTTAGTAGCTCATAGCAGAAAACTGATTAAGTACTTGTTCTAATATCCATGTCCAATATTTTCCTGTAAAGTTGTAAGATATACTACCAAGTAACAATACAAGGAAAGTGACTTTCCTTGCAGAAACTCTGTTTTTAGCTAGTAATGACATTTTCCAAGTCTCACTTGAATATCTTTGAATGCCTTGATTGGGGATGTTCGAGTGAGCTTGGGTTGTAATACAGTAGTCTTATGGGACACTGAGATAAGAAGTATGAAATTGATAGATTATTATTCATAAGCCTACACTCAAGTATGAAATTAATAGATTATTATTACATAAACCTTTTATTACAATTAGGTTGTAACTTCTAAGTTATCAAATTTGAGTGGCTGTTGGTCTAACCTTTTTATTATTTTTTTTTTTACCAGTGGTGTGGAATCCTTGGGATAAGAAAGCAAAGTCTATGGCTGATTTCGGGGATGATGAGTATAAGCATATGCTTTGTGTAGAGGCTGCTAATATTGAAAAGGCTATCACTTTGAAACCTGGAGAAGAATGGAAAGGAAGACTAGAGCTTTCAGCTGTTCCATCTAGTTACTGTAGTGGGCAGCTTGATCCCCAGAGAGTTCTTCAGGGCAGCTGA

Protein sequence

>MS.gene060400.t1

MNNEKLSSSSSSFTLTKGINGLDKVLLRESRGASAEIYLYGGHVTSWKNDHAEELLFLSSKAIFKPPKAIRGGIPICFPQFANHGNLESHGFARNRVWAIEDDPPPFPTNNLSKAFVDLILKPSEEDMKIWNHSFEYRLRVALGPGGDLMLTSRIRNTNSDGKPFSFTFAYHTYFSVSDISEVRVEGLETLDYLDNLQNKERFTEQGDALTFESEVDKIYLSTPTKIAIIDHEKKRTFVLRKDGLPDAVVWNPWDKKAKSMADFGDDEYKHMLCVEAANIEKAITLKPGEEWKGRLELSAVPSSYCSGQLDPQRVLQGS