Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072750.t1 | XP_003611029.1 | 99 | 304 | 3 | 0 | 1 | 304 | 1 | 304 | 2.10E-175 | 624.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072750.t1 | Q40784 | 66.3 | 291 | 96 | 1 | 16 | 304 | 25 | 315 | 1.2e-118 | 427.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072750.t1 | G7KAP1 | 99.0 | 304 | 3 | 0 | 1 | 304 | 1 | 304 | 1.5e-175 | 624.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene072750 | 0.861416 | 1.04E-63 | -1.69E-46 |
| MS.gene049222 | MS.gene072750 | 0.837458 | 5.14E-57 | -1.69E-46 |
| MS.gene049285 | MS.gene072750 | 0.811364 | 7.26E-51 | -1.69E-46 |
| MS.gene049609 | MS.gene072750 | 0.853448 | 2.37E-61 | -1.69E-46 |
| MS.gene049805 | MS.gene072750 | 0.847349 | 1.22E-59 | -1.69E-46 |
| MS.gene050170 | MS.gene072750 | 0.800205 | 1.61E-48 | -1.69E-46 |
| MS.gene050593 | MS.gene072750 | 0.825129 | 5.55E-54 | -1.69E-46 |
| MS.gene050747 | MS.gene072750 | 0.859696 | 3.46E-63 | -1.69E-46 |
| MS.gene050772 | MS.gene072750 | 0.847389 | 1.19E-59 | -1.69E-46 |
| MS.gene050950 | MS.gene072750 | 0.85148 | 8.64E-61 | -1.69E-46 |
| MS.gene05105 | MS.gene072750 | 0.816262 | 6.05E-52 | -1.69E-46 |
| MS.gene051167 | MS.gene072750 | -0.800425 | 1.45E-48 | -1.69E-46 |
| MS.gene051387 | MS.gene072750 | 0.82963 | 4.62E-55 | -1.69E-46 |
| MS.gene051666 | MS.gene072750 | 0.814932 | 1.20E-51 | -1.69E-46 |
| MS.gene051694 | MS.gene072750 | 0.823137 | 1.63E-53 | -1.69E-46 |
| MS.gene051858 | MS.gene072750 | 0.822622 | 2.15E-53 | -1.69E-46 |
| MS.gene052421 | MS.gene072750 | 0.859818 | 3.18E-63 | -1.69E-46 |
| MS.gene052501 | MS.gene072750 | 0.848117 | 7.52E-60 | -1.69E-46 |
| MS.gene052503 | MS.gene072750 | 0.829699 | 4.45E-55 | -1.69E-46 |
| MS.gene052505 | MS.gene072750 | 0.85022 | 1.95E-60 | -1.69E-46 |
| MS.gene052615 | MS.gene072750 | 0.833248 | 5.95E-56 | -1.69E-46 |
| MS.gene052823 | MS.gene072750 | 0.830864 | 2.31E-55 | -1.69E-46 |
| MS.gene052825 | MS.gene072750 | 0.830483 | 2.86E-55 | -1.69E-46 |
| MS.gene052982 | MS.gene072750 | 0.801562 | 8.49E-49 | -1.69E-46 |
| MS.gene053213 | MS.gene072750 | 0.846476 | 2.12E-59 | -1.69E-46 |
| MS.gene053286 | MS.gene072750 | 0.837076 | 6.43E-57 | -1.69E-46 |
| MS.gene053421 | MS.gene072750 | -0.804289 | 2.32E-49 | -1.69E-46 |
| MS.gene053436 | MS.gene072750 | 0.808404 | 3.15E-50 | -1.69E-46 |
| MS.gene053480 | MS.gene072750 | 0.812556 | 4.00E-51 | -1.69E-46 |
| MS.gene053574 | MS.gene072750 | 0.846526 | 2.06E-59 | -1.69E-46 |
| MS.gene053579 | MS.gene072750 | 0.810073 | 1.38E-50 | -1.69E-46 |
| MS.gene053626 | MS.gene072750 | 0.803566 | 3.28E-49 | -1.69E-46 |
| MS.gene053824 | MS.gene072750 | 0.83126 | 1.85E-55 | -1.69E-46 |
| MS.gene053873 | MS.gene072750 | 0.824359 | 8.42E-54 | -1.69E-46 |
| MS.gene054408 | MS.gene072750 | 0.844012 | 9.84E-59 | -1.69E-46 |
| MS.gene05505 | MS.gene072750 | 0.853284 | 2.65E-61 | -1.69E-46 |
| MS.gene055224 | MS.gene072750 | 0.810948 | 8.94E-51 | -1.69E-46 |
| MS.gene055289 | MS.gene072750 | 0.811877 | 5.62E-51 | -1.69E-46 |
| MS.gene055502 | MS.gene072750 | 0.809287 | 2.04E-50 | -1.69E-46 |
| MS.gene055909 | MS.gene072750 | 0.804344 | 2.26E-49 | -1.69E-46 |
| MS.gene055911 | MS.gene072750 | 0.805444 | 1.33E-49 | -1.69E-46 |
| MS.gene055941 | MS.gene072750 | 0.821715 | 3.48E-53 | -1.69E-46 |
| MS.gene056511 | MS.gene072750 | 0.817516 | 3.17E-52 | -1.69E-46 |
| MS.gene056692 | MS.gene072750 | 0.805933 | 1.05E-49 | -1.69E-46 |
| MS.gene057048 | MS.gene072750 | 0.806198 | 9.24E-50 | -1.69E-46 |
| MS.gene057076 | MS.gene072750 | 0.815604 | 8.49E-52 | -1.69E-46 |
| MS.gene057146 | MS.gene072750 | 0.823071 | 1.69E-53 | -1.69E-46 |
| MS.gene057416 | MS.gene072750 | 0.843584 | 1.28E-58 | -1.69E-46 |
| MS.gene057856 | MS.gene072750 | 0.809448 | 1.88E-50 | -1.69E-46 |
| MS.gene058007 | MS.gene072750 | 0.80729 | 5.43E-50 | -1.69E-46 |
| MS.gene058019 | MS.gene072750 | 0.821557 | 3.79E-53 | -1.69E-46 |
| MS.gene058376 | MS.gene072750 | 0.813631 | 2.32E-51 | -1.69E-46 |
| MS.gene05837 | MS.gene072750 | 0.825122 | 5.57E-54 | -1.69E-46 |
| MS.gene058419 | MS.gene072750 | 0.823146 | 1.62E-53 | -1.69E-46 |
| MS.gene058700 | MS.gene072750 | 0.817259 | 3.62E-52 | -1.69E-46 |
| MS.gene058838 | MS.gene072750 | 0.808627 | 2.82E-50 | -1.69E-46 |
| MS.gene05883 | MS.gene072750 | 0.809273 | 2.05E-50 | -1.69E-46 |
| MS.gene059023 | MS.gene072750 | 0.815433 | 9.27E-52 | -1.69E-46 |
| MS.gene05934 | MS.gene072750 | 0.843165 | 1.66E-58 | -1.69E-46 |
| MS.gene059455 | MS.gene072750 | 0.802195 | 6.30E-49 | -1.69E-46 |
| MS.gene059536 | MS.gene072750 | 0.800507 | 1.40E-48 | -1.69E-46 |
| MS.gene059677 | MS.gene072750 | 0.80904 | 2.30E-50 | -1.69E-46 |
| MS.gene059718 | MS.gene072750 | 0.812073 | 5.09E-51 | -1.69E-46 |
| MS.gene059756 | MS.gene072750 | 0.802331 | 5.90E-49 | -1.69E-46 |
| MS.gene059801 | MS.gene072750 | 0.81059 | 1.07E-50 | -1.69E-46 |
| MS.gene059902 | MS.gene072750 | 0.814075 | 1.85E-51 | -1.69E-46 |
| MS.gene060485 | MS.gene072750 | 0.804646 | 1.95E-49 | -1.69E-46 |
| MS.gene06077 | MS.gene072750 | 0.818486 | 1.91E-52 | -1.69E-46 |
| MS.gene060835 | MS.gene072750 | 0.805018 | 1.63E-49 | -1.69E-46 |
| MS.gene06092 | MS.gene072750 | 0.821625 | 3.66E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene072750 | MS.gene053078 | PPI |
| MS.gene025937 | MS.gene072750 | PPI |
| MS.gene060400 | MS.gene072750 | PPI |
| MS.gene053627 | MS.gene072750 | PPI |
| MS.gene82807 | MS.gene072750 | PPI |
| MS.gene072750 | MS.gene050620 | PPI |
| MS.gene40102 | MS.gene072750 | PPI |
| MS.gene22823 | MS.gene072750 | PPI |
| MS.gene024472 | MS.gene072750 | PPI |
| MS.gene57695 | MS.gene072750 | PPI |
| MS.gene072750 | MS.gene037013 | PPI |
| MS.gene072750 | MS.gene90270 | PPI |
| MS.gene028526 | MS.gene072750 | PPI |
| MS.gene032655 | MS.gene072750 | PPI |
| MS.gene73340 | MS.gene072750 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072750.t1 | MTR_5g009670 | 99.013 | 304 | 3 | 0 | 1 | 304 | 1 | 304 | 0.0 | 625 |
| MS.gene072750.t1 | MTR_5g009670 | 99.194 | 248 | 2 | 0 | 1 | 248 | 1 | 248 | 0.0 | 511 |
| MS.gene072750.t1 | MTR_4g092780 | 71.803 | 305 | 84 | 2 | 1 | 304 | 1 | 304 | 1.89e-165 | 462 |
| MS.gene072750.t1 | MTR_7g116910 | 69.836 | 305 | 90 | 2 | 1 | 304 | 1 | 304 | 3.15e-165 | 462 |
| MS.gene072750.t1 | MTR_2g036810 | 67.241 | 290 | 93 | 1 | 17 | 304 | 14 | 303 | 1.18e-152 | 430 |
| MS.gene072750.t1 | MTR_4g005740 | 66.667 | 285 | 93 | 1 | 22 | 304 | 15 | 299 | 5.05e-146 | 413 |
| MS.gene072750.t1 | MTR_6g004520 | 54.138 | 290 | 130 | 3 | 15 | 304 | 3 | 289 | 4.01e-115 | 334 |
| MS.gene072750.t1 | MTR_6g004520 | 54.138 | 290 | 130 | 3 | 15 | 304 | 61 | 347 | 9.04e-115 | 335 |
| MS.gene072750.t1 | MTR_6g004520 | 54.138 | 290 | 130 | 3 | 15 | 304 | 50 | 336 | 1.75e-114 | 334 |
| MS.gene072750.t1 | MTR_5g020640 | 33.218 | 289 | 174 | 7 | 15 | 301 | 41 | 312 | 5.82e-43 | 150 |
| MS.gene072750.t1 | MTR_5g020640 | 36.464 | 181 | 107 | 4 | 15 | 195 | 41 | 213 | 4.99e-30 | 114 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072750.t1 | AT4G23730 | 69.608 | 306 | 91 | 2 | 1 | 304 | 1 | 306 | 1.13e-165 | 462 |
| MS.gene072750.t1 | AT3G61610 | 74.483 | 290 | 73 | 1 | 16 | 304 | 15 | 304 | 6.52e-165 | 461 |
| MS.gene072750.t1 | AT3G61610 | 74.483 | 290 | 73 | 1 | 16 | 304 | 9 | 298 | 7.22e-165 | 461 |
| MS.gene072750.t1 | AT4G23730 | 68.269 | 312 | 91 | 3 | 1 | 304 | 1 | 312 | 5.78e-163 | 456 |
| MS.gene072750.t1 | AT4G23730 | 73.881 | 268 | 68 | 2 | 39 | 304 | 4 | 271 | 1.60e-154 | 433 |
| MS.gene072750.t1 | AT5G57330 | 67.698 | 291 | 92 | 1 | 16 | 304 | 9 | 299 | 2.79e-154 | 434 |
| MS.gene072750.t1 | AT3G01590 | 60.000 | 285 | 112 | 2 | 20 | 304 | 8 | 290 | 6.11e-130 | 372 |
| MS.gene072750.t1 | AT3G01590 | 60.000 | 285 | 112 | 2 | 20 | 304 | 8 | 290 | 6.11e-130 | 372 |
| MS.gene072750.t1 | AT5G14500 | 57.586 | 290 | 121 | 2 | 15 | 304 | 3 | 290 | 8.30e-130 | 372 |
| MS.gene072750.t1 | AT5G14500 | 53.016 | 315 | 121 | 3 | 15 | 304 | 3 | 315 | 1.36e-123 | 357 |
| MS.gene072750.t1 | AT4G25900 | 51.042 | 288 | 136 | 2 | 16 | 303 | 32 | 314 | 4.60e-112 | 327 |
| MS.gene072750.t1 | AT5G66530 | 34.021 | 291 | 171 | 9 | 13 | 300 | 6 | 278 | 1.37e-44 | 153 |
| MS.gene072750.t1 | AT5G66530 | 34.021 | 291 | 171 | 9 | 13 | 300 | 34 | 306 | 2.97e-44 | 153 |
| MS.gene072750.t1 | AT5G66530 | 34.021 | 291 | 171 | 9 | 13 | 300 | 34 | 306 | 2.97e-44 | 153 |
| MS.gene072750.t1 | AT5G66530 | 34.021 | 291 | 171 | 9 | 13 | 300 | 34 | 306 | 2.97e-44 | 153 |
Find 75 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAAGTCAATAGTGGATTT+TGG | 0.129984 | 5.3:-3566262 | MS.gene072750:CDS |
| ATTCCTCCTCGTACTGGTTT+TGG | 0.222742 | 5.3:+3567687 | None:intergenic |
| GACAGTGAAGTGAGGGTAGA+AGG | 0.250795 | 5.3:-3566745 | MS.gene072750:intron |
| GATTTGCAAGGAATAAGATA+TGG | 0.355587 | 5.3:-3567517 | MS.gene072750:CDS |
| TTACACATTGAATAGTTGTT+TGG | 0.364398 | 5.3:-3566303 | MS.gene072750:intron |
| ACGGAGGGCAAGTTCTTTCA+TGG | 0.380303 | 5.3:-3567997 | MS.gene072750:CDS |
| AAGGCTTGCCATTGACATTC+CGG | 0.382320 | 5.3:+3567028 | None:intergenic |
| TACGGACCTGATATCTGATA+TGG | 0.394110 | 5.3:+3566972 | None:intergenic |
| TGAAGCGTTCCTTCTGGTAT+AGG | 0.403091 | 5.3:+3566695 | None:intergenic |
| CTGAAGACGATATGAAGATA+TGG | 0.407969 | 5.3:-3567418 | MS.gene072750:CDS |
| CGGCCGGTCCATTCTTCTCC+CGG | 0.408566 | 5.3:+3566172 | None:intergenic |
| GTTCTGTGAAGCGTTCCTTC+TGG | 0.411774 | 5.3:+3566689 | None:intergenic |
| TTATCTCGATTCTAGCAGTA+TGG | 0.412644 | 5.3:-3566518 | MS.gene072750:CDS |
| TGAAGTGAGGGTAGAAGGGT+TGG | 0.418375 | 5.3:-3566740 | MS.gene072750:CDS |
| ATTACCTGTGGAAAACAGAT+TGG | 0.421320 | 5.3:+3567663 | None:intergenic |
| GAAAGACACTTACCAACATC+TGG | 0.431173 | 5.3:+3566439 | None:intergenic |
| ATTTCTCCATATCAGATATC+AGG | 0.439981 | 5.3:-3566978 | MS.gene072750:intron |
| GTTTCGCCTAAGGGTCTGTT+TGG | 0.445507 | 5.3:-3567085 | MS.gene072750:CDS |
| GAATAGTTGTTTGGAATCCC+TGG | 0.459977 | 5.3:-3566294 | MS.gene072750:intron |
| CCATTTGAATCCGTGGGCAG+TGG | 0.460101 | 5.3:+3567473 | None:intergenic |
| AGAAGAATGGACCGGCCGCT+TGG | 0.461091 | 5.3:-3566167 | MS.gene072750:CDS |
| GTTGTTCTTCGAAACGTTCG+AGG | 0.461265 | 5.3:-3568139 | MS.gene072750:CDS |
| AAATCCGATAACCTTAAAAC+CGG | 0.461715 | 5.3:-3566191 | MS.gene072750:CDS |
| CCTTAAAACCGGGAGAAGAA+TGG | 0.474210 | 5.3:-3566180 | MS.gene072750:CDS |
| TTACCTGTGGAAAACAGATT+GGG | 0.476013 | 5.3:+3567664 | None:intergenic |
| ATTGGGATTCCTCCTCGTAC+TGG | 0.478898 | 5.3:+3567681 | None:intergenic |
| AACATCAGTTGAAGTTATCA+AGG | 0.479030 | 5.3:-3568182 | MS.gene072750:CDS |
| GAATCCGTGGGCAGTGGTGG+AGG | 0.481987 | 5.3:+3567479 | None:intergenic |
| TTGAAGTCAAGTCAAGTAGA+AGG | 0.484710 | 5.3:+3566130 | None:intergenic |
| CAGCTTCGAGTTTCGCCTAA+GGG | 0.487911 | 5.3:-3567094 | MS.gene072750:CDS |
| TCAGCTTCGAGTTTCGCCTA+AGG | 0.489943 | 5.3:-3567095 | MS.gene072750:intron |
| ACAGTGAAGTGAGGGTAGAA+GGG | 0.492013 | 5.3:-3566744 | MS.gene072750:intron |
| CCTTCTGGTATAGGTTATCC+AGG | 0.493007 | 5.3:+3566704 | None:intergenic |
| TGCTTTAACATTTGAATCTG+AGG | 0.495159 | 5.3:-3566659 | MS.gene072750:intron |
| GTTATTGTTCACTAGTACCA+AGG | 0.506527 | 5.3:-3567954 | MS.gene072750:intron |
| TGAATATGATATCTCGCATC+CGG | 0.512657 | 5.3:-3567047 | MS.gene072750:CDS |
| ATTTGCAAGGAATAAGATAT+GGG | 0.514716 | 5.3:-3567516 | MS.gene072750:CDS |
| TCTCGCATCCGGAATGTCAA+TGG | 0.518066 | 5.3:-3567036 | MS.gene072750:CDS |
| TTCAGGTTAGCTTGCACGGA+GGG | 0.519016 | 5.3:-3568012 | MS.gene072750:intron |
| TTTGAATCCGTGGGCAGTGG+TGG | 0.520143 | 5.3:+3567476 | None:intergenic |
| AATAGTTGTTTGGAATCCCT+GGG | 0.525696 | 5.3:-3566293 | MS.gene072750:intron |
| CCACTGCCCACGGATTCAAA+TGG | 0.526642 | 5.3:-3567473 | MS.gene072750:CDS |
| CATGTTGCTCTAGTGTTCCA+CGG | 0.532159 | 5.3:+3567540 | None:intergenic |
| TTTCTTCTCATGATCTAGAA+CGG | 0.537918 | 5.3:+3566492 | None:intergenic |
| ATCTTCATATCGTCTTCAGA+TGG | 0.538140 | 5.3:+3567422 | None:intergenic |
| AGGGTCTGTTTGGCAGCAGA+TGG | 0.540406 | 5.3:-3567075 | MS.gene072750:CDS |
| AACAGAAAGCTCCAAGCGGC+CGG | 0.541122 | 5.3:+3566156 | None:intergenic |
| TGCGTGGATGGTGCAGCAGT+TGG | 0.542462 | 5.3:-3566214 | MS.gene072750:CDS |
| GTTGGAGACTCTTGACTACC+TGG | 0.542710 | 5.3:-3566722 | MS.gene072750:CDS |
| AAGCAAATGCTCTGCGTGGA+TGG | 0.557893 | 5.3:-3566226 | MS.gene072750:CDS |
| GAAATATGTATGAAATGCAA+AGG | 0.575295 | 5.3:+3566996 | None:intergenic |
| AAGGAAGGTCTTCCAGATGT+TGG | 0.585878 | 5.3:-3566451 | MS.gene072750:intron |
| CTGCTGCCAAACAGACCCTT+AGG | 0.589405 | 5.3:+3567079 | None:intergenic |
| AAATCCTCCACCACTGCCCA+CGG | 0.590093 | 5.3:-3567483 | MS.gene072750:CDS |
| AAGGAACGCTTCACAGAACA+AGG | 0.595906 | 5.3:-3566685 | MS.gene072750:CDS |
| AAACCGGGAGAAGAATGGAC+CGG | 0.609197 | 5.3:-3566175 | MS.gene072750:CDS |
| AATGCAAAGGAGAAACTGAA+AGG | 0.627775 | 5.3:+3567009 | None:intergenic |
| ACGAACATTTGTGATACGAA+AGG | 0.635723 | 5.3:-3566470 | MS.gene072750:CDS |
| ATATGAAGATATGGCCACAT+AGG | 0.635993 | 5.3:-3567409 | MS.gene072750:intron |
| CCTGGATAACCTATACCAGA+AGG | 0.640312 | 5.3:-3566704 | MS.gene072750:CDS |
| CGTGGAACACTAGAGCAACA+TGG | 0.643884 | 5.3:-3567539 | MS.gene072750:CDS |
| TAAAGCGCGTCGCACCTATG+TGG | 0.646274 | 5.3:+3567395 | None:intergenic |
| TAGAGCAACATGGATTTGCA+AGG | 0.656362 | 5.3:-3567529 | MS.gene072750:CDS |
| GATTATTGACAGTGAAGTGA+GGG | 0.659710 | 5.3:-3566752 | MS.gene072750:intron |
| TTTCAGGTTAGCTTGCACGG+AGG | 0.662583 | 5.3:-3568013 | MS.gene072750:intron |
| ACATTTGTGATACGAAAGGA+AGG | 0.663497 | 5.3:-3566466 | MS.gene072750:CDS |
| CGTTCGAGGAGCTTCAGCAA+CGG | 0.664112 | 5.3:-3568125 | MS.gene072750:intron |
| CTTTCATGGAAAACAGAACG+CGG | 0.670837 | 5.3:-3567983 | MS.gene072750:CDS |
| TGCGAGATATCATATTCAGA+CGG | 0.674803 | 5.3:+3567052 | None:intergenic |
| TGATTATTGACAGTGAAGTG+AGG | 0.678841 | 5.3:-3566753 | MS.gene072750:intron |
| AATCCGATAACCTTAAAACC+GGG | 0.679316 | 5.3:-3566190 | MS.gene072750:CDS |
| GTACAAGCAAATGCTCTGCG+TGG | 0.681422 | 5.3:-3566230 | MS.gene072750:CDS |
| CCTCCAAAACCAGTACGAGG+AGG | 0.735431 | 5.3:-3567690 | MS.gene072750:CDS |
| GTACAACAGAAAGCTCCAAG+CGG | 0.740861 | 5.3:+3566152 | None:intergenic |
| ACTCCTCCAAAACCAGTACG+AGG | 0.754632 | 5.3:-3567693 | MS.gene072750:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTAACTTGATAAATATA+AGG | + | chr5.3:3567757-3567776 | None:intergenic | 10.0% |
| !! | AAAATTTAAAAACGAACAAA+AGG | + | chr5.3:3567502-3567521 | None:intergenic | 15.0% |
| !! | ATATAGATAGATAGATAATA+AGG | - | chr5.3:3566764-3566783 | MS.gene072750:intron | 15.0% |
| !!! | AAATATACTTGTTATTATAG+AGG | + | chr5.3:3567183-3567202 | None:intergenic | 15.0% |
| !!! | ACATTTTACAAACAAAATTA+AGG | + | chr5.3:3566598-3566617 | None:intergenic | 15.0% |
| !! | CAAAATCTAAGTACTATAAT+TGG | - | chr5.3:3567968-3567987 | MS.gene072750:CDS | 20.0% |
| !! | CAAACAAAATTAAGGTTAAT+TGG | + | chr5.3:3566590-3566609 | None:intergenic | 20.0% |
| !! | GCTATATATAGAACTATTAA+AGG | - | chr5.3:3567070-3567089 | MS.gene072750:CDS | 20.0% |
| !! | TAACTTGATAAATATAAGGA+TGG | + | chr5.3:3567753-3567772 | None:intergenic | 20.0% |
| !! | TATATAGATTTCTGTAATTC+AGG | + | chr5.3:3566749-3566768 | None:intergenic | 20.0% |
| !!! | AGCATTTTACTTATGAATTT+GGG | - | chr5.3:3567014-3567033 | MS.gene072750:CDS | 20.0% |
| !!! | CAAGATCAATTATTTTATCA+AGG | - | chr5.3:3567437-3567456 | MS.gene072750:CDS | 20.0% |
| ! | AATAACTGAGATAAATTGAG+AGG | - | chr5.3:3567048-3567067 | MS.gene072750:CDS | 25.0% |
| ! | AGATAGATAGATAATAAGGT+TGG | - | chr5.3:3566768-3566787 | MS.gene072750:intron | 25.0% |
| ! | ATTCAATGTGTAAATTGACA+TGG | + | chr5.3:3568048-3568067 | None:intergenic | 25.0% |
| ! | ATTTGCAAGGAATAAGATAT+GGG | - | chr5.3:3566842-3566861 | MS.gene072750:intron | 25.0% |
| ! | CAAATTCATAAGTAAAATGC+TGG | + | chr5.3:3567015-3567034 | None:intergenic | 25.0% |
| ! | GAAAAAATCAAAGTCAATAG+TGG | - | chr5.3:3568089-3568108 | MS.gene072750:intron | 25.0% |
| ! | GAAATATGTATGAAATGCAA+AGG | + | chr5.3:3567365-3567384 | None:intergenic | 25.0% |
| ! | TAGAACTATTAAAGGACTAT+TGG | - | chr5.3:3567078-3567097 | MS.gene072750:CDS | 25.0% |
| ! | TCAATAATCAGCAAAAGTTA+AGG | + | chr5.3:3567595-3567614 | None:intergenic | 25.0% |
| ! | TTACACATTGAATAGTTGTT+TGG | - | chr5.3:3568055-3568074 | MS.gene072750:intron | 25.0% |
| !! | CAGCATTTTACTTATGAATT+TGG | - | chr5.3:3567013-3567032 | MS.gene072750:CDS | 25.0% |
| !! | CATTTTACTTATGAATTTGG+GGG | - | chr5.3:3567016-3567035 | MS.gene072750:CDS | 25.0% |
| !! | GCATTTTACTTATGAATTTG+GGG | - | chr5.3:3567015-3567034 | MS.gene072750:CDS | 25.0% |
| !!! | ATAGTACTTAGATTTTGAGT+CGG | + | chr5.3:3567965-3567984 | None:intergenic | 25.0% |
| !!! | TGGTGTGATTTATTTTAGTT+TGG | - | chr5.3:3566792-3566811 | MS.gene072750:intron | 25.0% |
| AAATCCGATAACCTTAAAAC+CGG | - | chr5.3:3568167-3568186 | MS.gene072750:CDS | 30.0% | |
| AACATCAGTTGAAGTTATCA+AGG | - | chr5.3:3566176-3566195 | MS.gene072750:CDS | 30.0% | |
| AATGTGTAAATTGACATGGA+TGG | + | chr5.3:3568044-3568063 | None:intergenic | 30.0% | |
| AGCACCAATCAAATTCAAAA+GGG | + | chr5.3:3566306-3566325 | None:intergenic | 30.0% | |
| ATCTTCAGAATTGAGATTGT+TGG | - | chr5.3:3567208-3567227 | MS.gene072750:intron | 30.0% | |
| ATTTCTCCATATCAGATATC+AGG | - | chr5.3:3567380-3567399 | MS.gene072750:intron | 30.0% | |
| ATTTCTCTCTCTTTCCAATT+AGG | - | chr5.3:3566634-3566653 | MS.gene072750:intron | 30.0% | |
| CAAAAAAACCTCATTTACCT+TGG | + | chr5.3:3566424-3566443 | None:intergenic | 30.0% | |
| GAAGTTATCAAGGACAAAAA+TGG | - | chr5.3:3566186-3566205 | MS.gene072750:CDS | 30.0% | |
| GATTTGCAAGGAATAAGATA+TGG | - | chr5.3:3566841-3566860 | MS.gene072750:intron | 30.0% | |
| TAGCACCAATCAAATTCAAA+AGG | + | chr5.3:3566307-3566326 | None:intergenic | 30.0% | |
| TGCTTTAACATTTGAATCTG+AGG | - | chr5.3:3567699-3567718 | MS.gene072750:CDS | 30.0% | |
| TTTCTTCTCATGATCTAGAA+CGG | + | chr5.3:3567869-3567888 | None:intergenic | 30.0% | |
| ! | AGATAGATAATAAGGTTGGT+TGG | - | chr5.3:3566772-3566791 | MS.gene072750:intron | 30.0% |
| ! | AGCATGTTGGTAAAATTTCA+AGG | + | chr5.3:3567790-3567809 | None:intergenic | 30.0% |
| ! | CTACTATCTAAAATTACCTG+TGG | + | chr5.3:3566710-3566729 | None:intergenic | 30.0% |
| ! | GAAATTTTACCAACATGCTA+AGG | - | chr5.3:3567791-3567810 | MS.gene072750:intron | 30.0% |
| ! | GCATGTTGGTAAAATTTCAA+GGG | + | chr5.3:3567789-3567808 | None:intergenic | 30.0% |
| ! | TATATGTGATAGTGATTCGT+AGG | - | chr5.3:3566545-3566564 | MS.gene072750:intron | 30.0% |
| ! | TCTACCCTTTTGAATTTGAT+TGG | - | chr5.3:3566299-3566318 | MS.gene072750:intron | 30.0% |
| ! | TGATCTTATCTTGAAAGTGT+TGG | + | chr5.3:3567419-3567438 | None:intergenic | 30.0% |
| ! | TTGTTATTATAGAGGAACTG+GGG | + | chr5.3:3567175-3567194 | None:intergenic | 30.0% |
| !! | ACTTGTTATTATAGAGGAAC+TGG | + | chr5.3:3567177-3567196 | None:intergenic | 30.0% |
| !! | CTTGTTATTATAGAGGAACT+GGG | + | chr5.3:3567176-3567195 | None:intergenic | 30.0% |
| !! | GCGATTCATTTTTCTTTGTA+AGG | + | chr5.3:3567113-3567132 | None:intergenic | 30.0% |
| !! | TTATCTTGAAAGTGTTGGAA+TGG | + | chr5.3:3567414-3567433 | None:intergenic | 30.0% |
| !!! | AAAGTCAATAGTGGATTTTG+GGG | - | chr5.3:3568098-3568117 | MS.gene072750:intron | 30.0% |
| !!! | CAAAGTCAATAGTGGATTTT+GGG | - | chr5.3:3568097-3568116 | MS.gene072750:intron | 30.0% |
| !!! | TCAAAGTCAATAGTGGATTT+TGG | - | chr5.3:3568096-3568115 | MS.gene072750:intron | 30.0% |
| !!! | TTATTTTAGTTTGGAAACCG+TGG | - | chr5.3:3566801-3566820 | MS.gene072750:intron | 30.0% |
| AATCCGATAACCTTAAAACC+GGG | - | chr5.3:3568168-3568187 | MS.gene072750:CDS | 35.0% | |
| AATGCAAAGGAGAAACTGAA+AGG | + | chr5.3:3567352-3567371 | None:intergenic | 35.0% | |
| ACATTTGTGATACGAAAGGA+AGG | - | chr5.3:3567892-3567911 | MS.gene072750:intron | 35.0% | |
| ACGAACATTTGTGATACGAA+AGG | - | chr5.3:3567888-3567907 | MS.gene072750:intron | 35.0% | |
| AGTGCTACATAGGAAATAAC+TGG | + | chr5.3:3566449-3566468 | None:intergenic | 35.0% | |
| ATATGAAGATATGGCCACAT+AGG | - | chr5.3:3566949-3566968 | MS.gene072750:intron | 35.0% | |
| ATCTTCATATCGTCTTCAGA+TGG | + | chr5.3:3566939-3566958 | None:intergenic | 35.0% | |
| ATTACCTGTGGAAAACAGAT+TGG | + | chr5.3:3566698-3566717 | None:intergenic | 35.0% | |
| CAAATAAGACCTTAGCATGT+TGG | + | chr5.3:3567803-3567822 | None:intergenic | 35.0% | |
| CAAATTCAAAAGGGTAGATG+CGG | + | chr5.3:3566297-3566316 | None:intergenic | 35.0% | |
| CTGAAGACGATATGAAGATA+TGG | - | chr5.3:3566940-3566959 | MS.gene072750:intron | 35.0% | |
| GATTATTGACAGTGAAGTGA+GGG | - | chr5.3:3567606-3567625 | MS.gene072750:intron | 35.0% | |
| GTTATTGTTCACTAGTACCA+AGG | - | chr5.3:3566404-3566423 | MS.gene072750:intron | 35.0% | |
| TGAATATGATATCTCGCATC+CGG | - | chr5.3:3567311-3567330 | MS.gene072750:intron | 35.0% | |
| TGATTATTGACAGTGAAGTG+AGG | - | chr5.3:3567605-3567624 | MS.gene072750:intron | 35.0% | |
| TGCGAGATATCATATTCAGA+CGG | + | chr5.3:3567309-3567328 | None:intergenic | 35.0% | |
| TTACCTGTGGAAAACAGATT+GGG | + | chr5.3:3566697-3566716 | None:intergenic | 35.0% | |
| TTATCTCGATTCTAGCAGTA+TGG | - | chr5.3:3567840-3567859 | MS.gene072750:intron | 35.0% | |
| ! | AATAGTTGTTTGGAATCCCT+GGG | - | chr5.3:3568065-3568084 | MS.gene072750:intron | 35.0% |
| ! | CTTTGAATTAAAGGCATGTC+CGG | - | chr5.3:3566473-3566492 | MS.gene072750:CDS | 35.0% |
| ! | GCACTGACACTTTGAATTAA+AGG | - | chr5.3:3566464-3566483 | MS.gene072750:CDS | 35.0% |
| ! | GTATCTAGCTACATGCTTTT+GGG | + | chr5.3:3567153-3567172 | None:intergenic | 35.0% |
| ! | TAACATTTGAATCTGAGGTG+AGG | - | chr5.3:3567704-3567723 | MS.gene072750:CDS | 35.0% |
| !! | AAGGTCTTATTTGTGTTAGG+TGG | - | chr5.3:3567810-3567829 | MS.gene072750:intron | 35.0% |
| !! | GCTAAGGTCTTATTTGTGTT+AGG | - | chr5.3:3567807-3567826 | MS.gene072750:intron | 35.0% |
| !!! | GACTTTGATTTTTTCTCCCA+GGG | + | chr5.3:3568084-3568103 | None:intergenic | 35.0% |
| !!! | TGACTTTGATTTTTTCTCCC+AGG | + | chr5.3:3568085-3568104 | None:intergenic | 35.0% |
| AAAATGAATCGCATCCAGAG+AGG | - | chr5.3:3567121-3567140 | MS.gene072750:intron | 40.0% | |
| ACACCAATCATAGAAGTGAC+CGG | + | chr5.3:3566495-3566514 | None:intergenic | 40.0% | |
| ATCAGACACAACACTGATAC+TGG | + | chr5.3:3566526-3566545 | None:intergenic | 40.0% | |
| CACTAGTACCAAGGTAAATG+AGG | - | chr5.3:3566413-3566432 | MS.gene072750:intron | 40.0% | |
| CTTTCATGGAAAACAGAACG+CGG | - | chr5.3:3566375-3566394 | MS.gene072750:intron | 40.0% | |
| GAAAGACACTTACCAACATC+TGG | + | chr5.3:3567922-3567941 | None:intergenic | 40.0% | |
| TACGGACCTGATATCTGATA+TGG | + | chr5.3:3567389-3567408 | None:intergenic | 40.0% | |
| TAGAGCAACATGGATTTGCA+AGG | - | chr5.3:3566829-3566848 | MS.gene072750:intron | 40.0% | |
| ! | AATCCCAATCTGTTTTCCAC+AGG | - | chr5.3:3566691-3566710 | MS.gene072750:CDS | 40.0% |
| ! | AGCTTTTCCATTTGAATCCG+TGG | + | chr5.3:3566895-3566914 | None:intergenic | 40.0% |
| ! | GAATAGTTGTTTGGAATCCC+TGG | - | chr5.3:3568064-3568083 | MS.gene072750:intron | 40.0% |
| ! | GCTTTTCCATTTGAATCCGT+GGG | + | chr5.3:3566894-3566913 | None:intergenic | 40.0% |
| ! | GGTATCTAGCTACATGCTTT+TGG | + | chr5.3:3567154-3567173 | None:intergenic | 40.0% |
| ! | TCAAAGTGTCAGTGCTACAT+AGG | + | chr5.3:3566459-3566478 | None:intergenic | 40.0% |
| !! | GAAAGTGTTGGAATGGCATA+CGG | + | chr5.3:3567407-3567426 | None:intergenic | 40.0% |
| !! | GTTGTGTGTGTGACTTTTTC+AGG | - | chr5.3:3566329-3566348 | MS.gene072750:intron | 40.0% |
| !!! | CTTTTTCAGGTTAGCTTGCA+CGG | - | chr5.3:3566342-3566361 | MS.gene072750:intron | 40.0% |
| !!! | TCTCCCGGTTTTAAGGTTAT+CGG | + | chr5.3:3568174-3568193 | None:intergenic | 40.0% |
| !!! | TGGTTTTGGAGGAGTATAGA+CGG | + | chr5.3:3566660-3566679 | None:intergenic | 40.0% |
| AAGGAACGCTTCACAGAACA+AGG | - | chr5.3:3567673-3567692 | MS.gene072750:CDS | 45.0% | |
| AAGGAAGGTCTTCCAGATGT+TGG | - | chr5.3:3567907-3567926 | MS.gene072750:intron | 45.0% | |
| AAGGCTTGCCATTGACATTC+CGG | + | chr5.3:3567333-3567352 | None:intergenic | 45.0% | |
| ACAGTGAAGTGAGGGTAGAA+GGG | - | chr5.3:3567614-3567633 | MS.gene072750:intron | 45.0% | |
| CATGTTGCTCTAGTGTTCCA+CGG | + | chr5.3:3566821-3566840 | None:intergenic | 45.0% | |
| CCTGGATAACCTATACCAGA+AGG | - | chr5.3:3567654-3567673 | MS.gene072750:intron | 45.0% | |
| CCTTAAAACCGGGAGAAGAA+TGG | - | chr5.3:3568178-3568197 | MS.gene072750:CDS | 45.0% | |
| CCTTCTGGTATAGGTTATCC+AGG | + | chr5.3:3567657-3567676 | None:intergenic | 45.0% | |
| GTACAACAGAAAGCTCCAAG+CGG | + | chr5.3:3568209-3568228 | None:intergenic | 45.0% | |
| GTTGTTCTTCGAAACGTTCG+AGG | - | chr5.3:3566219-3566238 | MS.gene072750:CDS | 45.0% | |
| TGTCCGGTCACTTCTATGAT+TGG | - | chr5.3:3566489-3566508 | MS.gene072750:CDS | 45.0% | |
| ! | AGGAGTATAGACGGCCTAAT+TGG | + | chr5.3:3566651-3566670 | None:intergenic | 45.0% |
| ! | CCATTCTTCTCCCGGTTTTA+AGG | + | chr5.3:3568181-3568200 | None:intergenic | 45.0% |
| ! | TGAAGCGTTCCTTCTGGTAT+AGG | + | chr5.3:3567666-3567685 | None:intergenic | 45.0% |
| !!! | ATTCCTCCTCGTACTGGTTT+TGG | + | chr5.3:3566674-3566693 | None:intergenic | 45.0% |
| !!! | CTTTTGGGATTTCTCCTCTC+TGG | + | chr5.3:3567138-3567157 | None:intergenic | 45.0% |
| AAACCGGGAGAAGAATGGAC+CGG | - | chr5.3:3568183-3568202 | MS.gene072750:CDS | 50.0% | |
| AAGCAAATGCTCTGCGTGGA+TGG | - | chr5.3:3568132-3568151 | MS.gene072750:CDS | 50.0% | |
| ACGGAGGGCAAGTTCTTTCA+TGG | - | chr5.3:3566361-3566380 | MS.gene072750:intron | 50.0% | |
| ACTCCTCCAAAACCAGTACG+AGG | - | chr5.3:3566665-3566684 | MS.gene072750:CDS | 50.0% | |
| ATTGGGATTCCTCCTCGTAC+TGG | + | chr5.3:3566680-3566699 | None:intergenic | 50.0% | |
| CGTGGAACACTAGAGCAACA+TGG | - | chr5.3:3566819-3566838 | MS.gene072750:intron | 50.0% | |
| GACAGTGAAGTGAGGGTAGA+AGG | - | chr5.3:3567613-3567632 | MS.gene072750:intron | 50.0% | |
| GTACAAGCAAATGCTCTGCG+TGG | - | chr5.3:3568128-3568147 | MS.gene072750:CDS | 50.0% | |
| GTTGGAGACTCTTGACTACC+TGG | - | chr5.3:3567636-3567655 | MS.gene072750:intron | 50.0% | |
| GTTTCGCCTAAGGGTCTGTT+TGG | - | chr5.3:3567273-3567292 | MS.gene072750:intron | 50.0% | |
| TCTCGCATCCGGAATGTCAA+TGG | - | chr5.3:3567322-3567341 | MS.gene072750:intron | 50.0% | |
| TGAAGTGAGGGTAGAAGGGT+TGG | - | chr5.3:3567618-3567637 | MS.gene072750:intron | 50.0% | |
| ! | CAGCTTCGAGTTTCGCCTAA+GGG | - | chr5.3:3567264-3567283 | MS.gene072750:intron | 50.0% |
| ! | GTTCTGTGAAGCGTTCCTTC+TGG | + | chr5.3:3567672-3567691 | None:intergenic | 50.0% |
| ! | TCAGCTTCGAGTTTCGCCTA+AGG | - | chr5.3:3567263-3567282 | MS.gene072750:intron | 50.0% |
| !! | TTCAGGTTAGCTTGCACGGA+GGG | - | chr5.3:3566346-3566365 | MS.gene072750:intron | 50.0% |
| !! | TTTCAGGTTAGCTTGCACGG+AGG | - | chr5.3:3566345-3566364 | MS.gene072750:intron | 50.0% |
| AAATCCTCCACCACTGCCCA+CGG | - | chr5.3:3566875-3566894 | MS.gene072750:intron | 55.0% | |
| AACAGAAAGCTCCAAGCGGC+CGG | + | chr5.3:3568205-3568224 | None:intergenic | 55.0% | |
| AGGGTCTGTTTGGCAGCAGA+TGG | - | chr5.3:3567283-3567302 | MS.gene072750:intron | 55.0% | |
| CCACTGCCCACGGATTCAAA+TGG | - | chr5.3:3566885-3566904 | MS.gene072750:intron | 55.0% | |
| CCATTTGAATCCGTGGGCAG+TGG | + | chr5.3:3566888-3566907 | None:intergenic | 55.0% | |
| CCTCCAAAACCAGTACGAGG+AGG | - | chr5.3:3566668-3566687 | MS.gene072750:CDS | 55.0% | |
| CGTTCGAGGAGCTTCAGCAA+CGG | - | chr5.3:3566233-3566252 | MS.gene072750:CDS | 55.0% | |
| CTGCTGCCAAACAGACCCTT+AGG | + | chr5.3:3567282-3567301 | None:intergenic | 55.0% | |
| TAAAGCGCGTCGCACCTATG+TGG | + | chr5.3:3566966-3566985 | None:intergenic | 55.0% | |
| TTTGAATCCGTGGGCAGTGG+TGG | + | chr5.3:3566885-3566904 | None:intergenic | 55.0% | |
| !!! | CCTCCTCGTACTGGTTTTGG+AGG | + | chr5.3:3566671-3566690 | None:intergenic | 55.0% |
| AGAAGAATGGACCGGCCGCT+TGG | - | chr5.3:3568191-3568210 | MS.gene072750:CDS | 60.0% | |
| TGCGTGGATGGTGCAGCAGT+TGG | - | chr5.3:3568144-3568163 | MS.gene072750:CDS | 60.0% | |
| CGGCCGGTCCATTCTTCTCC+CGG | + | chr5.3:3568189-3568208 | None:intergenic | 65.0% | |
| GAATCCGTGGGCAGTGGTGG+AGG | + | chr5.3:3566882-3566901 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 3566141 | 3568239 | 3566141 | ID=MS.gene072750 |
| chr5.3 | mRNA | 3566141 | 3568239 | 3566141 | ID=MS.gene072750.t1;Parent=MS.gene072750 |
| chr5.3 | exon | 3568126 | 3568239 | 3568126 | ID=MS.gene072750.t1.exon1;Parent=MS.gene072750.t1 |
| chr5.3 | CDS | 3568126 | 3568239 | 3568126 | ID=cds.MS.gene072750.t1;Parent=MS.gene072750.t1 |
| chr5.3 | exon | 3567955 | 3568029 | 3567955 | ID=MS.gene072750.t1.exon2;Parent=MS.gene072750.t1 |
| chr5.3 | CDS | 3567955 | 3568029 | 3567955 | ID=cds.MS.gene072750.t1;Parent=MS.gene072750.t1 |
| chr5.3 | exon | 3567668 | 3567724 | 3567668 | ID=MS.gene072750.t1.exon3;Parent=MS.gene072750.t1 |
| chr5.3 | CDS | 3567668 | 3567724 | 3567668 | ID=cds.MS.gene072750.t1;Parent=MS.gene072750.t1 |
| chr5.3 | exon | 3567410 | 3567570 | 3567410 | ID=MS.gene072750.t1.exon4;Parent=MS.gene072750.t1 |
| chr5.3 | CDS | 3567410 | 3567570 | 3567410 | ID=cds.MS.gene072750.t1;Parent=MS.gene072750.t1 |
| chr5.3 | exon | 3566979 | 3567113 | 3566979 | ID=MS.gene072750.t1.exon5;Parent=MS.gene072750.t1 |
| chr5.3 | CDS | 3566979 | 3567113 | 3566979 | ID=cds.MS.gene072750.t1;Parent=MS.gene072750.t1 |
| chr5.3 | exon | 3566660 | 3566762 | 3566660 | ID=MS.gene072750.t1.exon6;Parent=MS.gene072750.t1 |
| chr5.3 | CDS | 3566660 | 3566762 | 3566660 | ID=cds.MS.gene072750.t1;Parent=MS.gene072750.t1 |
| chr5.3 | exon | 3566452 | 3566551 | 3566452 | ID=MS.gene072750.t1.exon7;Parent=MS.gene072750.t1 |
| chr5.3 | CDS | 3566452 | 3566551 | 3566452 | ID=cds.MS.gene072750.t1;Parent=MS.gene072750.t1 |
| chr5.3 | exon | 3566141 | 3566310 | 3566141 | ID=MS.gene072750.t1.exon8;Parent=MS.gene072750.t1 |
| chr5.3 | CDS | 3566141 | 3566310 | 3566141 | ID=cds.MS.gene072750.t1;Parent=MS.gene072750.t1 |
| Gene Sequence |
| Protein sequence |
