AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene34133


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene34133.t1 MTR_1g100220 93.836 146 9 0 2 147 113 258 2.53e-87 255
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene34133.t1 AT5G52440 54.305 151 50 6 2 136 112 259 1.65e-32 116

Find 33 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGGTAAGGATTCACTTTC+TGG 0.180828 1.2:+75017868 None:intergenic
AATGCAGGTTGCTCGAAATC+TGG 0.293696 1.2:-75020293 MS.gene34133:CDS
AGAAAGTGAATCCTTACCTT+TGG 0.373691 1.2:-75017866 MS.gene34133:CDS
CTTTCTGGCTTCTGAGGTGG+TGG 0.383809 1.2:+75017883 None:intergenic
GGCAGCTGCTGCACAACTGC+AGG 0.416323 1.2:-75018074 MS.gene34133:CDS
ACTAACCTGGATCTCTCTAA+TGG 0.439471 1.2:+75020243 None:intergenic
ATTTAAGAGTACCCTTGAAC+GGG 0.443904 1.2:-75020112 MS.gene34133:CDS
AAGAGTACGTATTCTGAGTT+GGG 0.445136 1.2:+75020064 None:intergenic
AGTACCCTTGAACGGGAGAT+TGG 0.451217 1.2:-75020105 MS.gene34133:CDS
GATTCACTTTCTGGCTTCTG+AGG 0.461812 1.2:+75017877 None:intergenic
GAAGAGTACGTATTCTGAGT+TGG 0.463633 1.2:+75020063 None:intergenic
ACCCACCATTAGAGAGATCC+AGG 0.479518 1.2:-75020248 MS.gene34133:intron
TCAGAGCTGTATGCTCTACT+TGG 0.481001 1.2:+75018130 None:intergenic
TCACTTTCTGGCTTCTGAGG+TGG 0.512638 1.2:+75017880 None:intergenic
CAAGACCAATCTCCCGTTCA+AGG 0.514273 1.2:+75020100 None:intergenic
TTCTTATGAATCCAAAGGTA+AGG 0.518567 1.2:+75017855 None:intergenic
ATGCAGGTTGCTCGAAATCT+GGG 0.519962 1.2:-75020292 MS.gene34133:CDS
CTGAGAACCATTGGTACTAT+CGG 0.543826 1.2:+75020005 None:intergenic
AATTTAAGAGTACCCTTGAA+CGG 0.550071 1.2:-75020113 MS.gene34133:CDS
GATTACAGAAGAGCAACTAA+AGG 0.558506 1.2:-75018095 MS.gene34133:CDS
GAACAGCAAAGTCAGCCTCC+TGG 0.562573 1.2:-75018019 MS.gene34133:intron
AACAGCAGTCTGAGAACCAT+TGG 0.563019 1.2:+75019996 None:intergenic
TTGGTACTATCGGTGGATAG+TGG 0.581780 1.2:+75020015 None:intergenic
ACCTGGATCTCTCTAATGGT+GGG 0.582822 1.2:+75020247 None:intergenic
AACCTGGATCTCTCTAATGG+TGG 0.586086 1.2:+75020246 None:intergenic
CTATAACAATGTAGATGGGA+AGG 0.593214 1.2:-75018158 MS.gene34133:intron
TGATGTGGTGTTGCGAACAT+TGG 0.602856 1.2:+75020041 None:intergenic
CGTACTTCTTATGAATCCAA+AGG 0.614454 1.2:+75017850 None:intergenic
AAGACCAATCTCCCGTTCAA+GGG 0.614541 1.2:+75020101 None:intergenic
CTATCCACCGATAGTACCAA+TGG 0.620692 1.2:-75020012 MS.gene34133:CDS
AGAACCATTGGTACTATCGG+TGG 0.637633 1.2:+75020008 None:intergenic
GGTGGATAGTGGAGCTGATG+TGG 0.643992 1.2:+75020026 None:intergenic
AAGTAGAGCATACAGCTCTG+AGG 0.718115 1.2:-75018128 MS.gene34133:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCTATTTTATTTTTATCTG+CGG - chr1.2:75018198-75018217 MS.gene34133:intron 15.0%
!! ATAACTTGGAAATCTAATAA+TGG + chr1.2:75018761-75018780 None:intergenic 20.0%
!! ATATCTATAACAATGTAGAT+GGG - chr1.2:75019988-75020007 MS.gene34133:intron 20.0%
!! ATTTATGTACTTCTAGATTT+AGG - chr1.2:75019444-75019463 MS.gene34133:intron 20.0%
!! GATAAAAATAAAATAGATGC+TGG + chr1.2:75018196-75018215 None:intergenic 20.0%
!! TATATCTATAACAATGTAGA+TGG - chr1.2:75019987-75020006 MS.gene34133:intron 20.0%
!! TATTTGATAAAATGCATATG+AGG + chr1.2:75018261-75018280 None:intergenic 20.0%
!!! AGTTTAATTTTGGCTATAAA+AGG - chr1.2:75019827-75019846 MS.gene34133:intron 20.0%
!!! GTTTAATTTTGGCTATAAAA+GGG - chr1.2:75019828-75019847 MS.gene34133:intron 20.0%
!!! TAGTTTTCAATTATAACCAT+TGG + chr1.2:75018594-75018613 None:intergenic 20.0%
!!! TCTATTTTATTTTTATCTGC+GGG - chr1.2:75018199-75018218 MS.gene34133:intron 20.0%
!!! TTTAATTTTGGCTATAAAAG+GGG - chr1.2:75019829-75019848 MS.gene34133:intron 20.0%
! AACAAACTTCAATGATAACT+TGG + chr1.2:75018775-75018794 None:intergenic 25.0%
! AACAAATTTAATCTACACTC+TGG + chr1.2:75017945-75017964 None:intergenic 25.0%
! AATAAATCACTGAAGAACAA+AGG - chr1.2:75019119-75019138 MS.gene34133:intron 25.0%
! AATAGAACATGATAAAAACG+AGG - chr1.2:75018914-75018933 MS.gene34133:intron 25.0%
! ACTATAGTAAATCTCTTTGA+AGG + chr1.2:75018689-75018708 None:intergenic 25.0%
! ACTATTTATGAACAACGAAA+TGG + chr1.2:75019590-75019609 None:intergenic 25.0%
! CAAAGAGATTTACTATAGTT+TGG - chr1.2:75018690-75018709 MS.gene34133:intron 25.0%
! CATATGGCAAAATAAAAGTA+AGG + chr1.2:75019067-75019086 None:intergenic 25.0%
! CTATAGTAAATCTCTTTGAA+GGG + chr1.2:75018688-75018707 None:intergenic 25.0%
! GACATTACTAATAGCTAAAT+TGG - chr1.2:75019165-75019184 MS.gene34133:intron 25.0%
! GGGTTTAAAAACAAAGTAAT+GGG - chr1.2:75019870-75019889 MS.gene34133:intron 25.0%
! TATAACCATTGGATCTTTAT+TGG + chr1.2:75018583-75018602 None:intergenic 25.0%
!! AAATCTATTTTCATGACTTG+GGG + chr1.2:75018490-75018509 None:intergenic 25.0%
!! CAAATCTATTTTCATGACTT+GGG + chr1.2:75018491-75018510 None:intergenic 25.0%
!! TATAGTAAATCTCTTTGAAG+GGG + chr1.2:75018687-75018706 None:intergenic 25.0%
!!! ACAATTTTAATCTCAACCAT+TGG - chr1.2:75018528-75018547 MS.gene34133:intron 25.0%
!!! AGATGATTGTTTTGTAAGAT+GGG + chr1.2:75018332-75018351 None:intergenic 25.0%
!!! CTATTTTATTTTTATCTGCG+GGG - chr1.2:75018200-75018219 MS.gene34133:intron 25.0%
!!! GTAAGGGTTTAGTTTAATTT+TGG - chr1.2:75019817-75019836 MS.gene34133:intron 25.0%
AAAAAGTTCCTAGAACCAAA+TGG - chr1.2:75019653-75019672 MS.gene34133:intron 30.0%
AAACATGATTGGCAATTTGA+TGG + chr1.2:75019946-75019965 None:intergenic 30.0%
AAATCAAAGAATCAACCGAT+TGG + chr1.2:75017977-75017996 None:intergenic 30.0%
AACATGATTGGCAATTTGAT+GGG + chr1.2:75019945-75019964 None:intergenic 30.0%
AATGTCATTCTAGATGTAAG+TGG + chr1.2:75019151-75019170 None:intergenic 30.0%
ACCTCAATAACCATATCATA+TGG + chr1.2:75018846-75018865 None:intergenic 30.0%
AGCTTCTATTGTAGAAAAGA+TGG - chr1.2:75019282-75019301 MS.gene34133:intron 30.0%
ATCACTAACGACTACAATTT+AGG + chr1.2:75018720-75018739 None:intergenic 30.0%
ATGGCAAAATAAAAGTAAGG+TGG + chr1.2:75019064-75019083 None:intergenic 30.0%
CAAAATTCTTCTTCAACAGA+TGG + chr1.2:75018374-75018393 None:intergenic 30.0%
CCAAGTCATGAAAATAGATT+TGG - chr1.2:75018489-75018508 MS.gene34133:intron 30.0%
CTAGTAATAGTTCACTTTCT+AGG + chr1.2:75019542-75019561 None:intergenic 30.0%
CTATCAATTGCCATATGATA+TGG - chr1.2:75018833-75018852 MS.gene34133:intron 30.0%
GAAAAATAGCATGCATATGA+TGG + chr1.2:75018295-75018314 None:intergenic 30.0%
GAAATAAGCATTTAAGAAGG+AGG - chr1.2:75019894-75019913 MS.gene34133:intron 30.0%
GGGGTTTAAAAACAAAGTAA+TGG - chr1.2:75019869-75019888 MS.gene34133:intron 30.0%
GGTGAAATAAGCATTTAAGA+AGG - chr1.2:75019891-75019910 MS.gene34133:intron 30.0%
TAAACTAAACCCTTACACTA+TGG + chr1.2:75019813-75019832 None:intergenic 30.0%
TATAAAAAAGACTAACCAGG+AGG + chr1.2:75020149-75020168 None:intergenic 30.0%
TCTATTGTAGAAAAGATGGA+GGG - chr1.2:75019286-75019305 MS.gene34133:intron 30.0%
TGCTATAAAAAAGACTAACC+AGG + chr1.2:75020152-75020171 None:intergenic 30.0%
TGTTTGACATCAAACATGAT+TGG + chr1.2:75019957-75019976 None:intergenic 30.0%
TTCTATTGTAGAAAAGATGG+AGG - chr1.2:75019285-75019304 MS.gene34133:intron 30.0%
! AGAAGAATTTTGTAGTTGCT+AGG - chr1.2:75018382-75018401 MS.gene34133:intron 30.0%
! CCAAATCTATTTTCATGACT+TGG + chr1.2:75018492-75018511 None:intergenic 30.0%
! CTTGGAAATCTAATAATGGA+AGG + chr1.2:75018757-75018776 None:intergenic 30.0%
! TATTAATTTTCCGTTGTCTC+TGG + chr1.2:75019345-75019364 None:intergenic 30.0%
! TTTGGGGAAAAAAAGAGTAT+TGG + chr1.2:75019633-75019652 None:intergenic 30.0%
! TTTTAATCTCAACCATTGGA+TGG - chr1.2:75018532-75018551 MS.gene34133:intron 30.0%
!! AATCTATTTTCATGACTTGG+GGG + chr1.2:75018489-75018508 None:intergenic 30.0%
!! AATTTAAGAGTACCCTTGAA+CGG - chr1.2:75018037-75018056 MS.gene34133:CDS 30.0%
!! ATTATTTCTGCCATAGTGTA+AGG - chr1.2:75019800-75019819 MS.gene34133:intron 30.0%
!! CAGATGATTGTTTTGTAAGA+TGG + chr1.2:75018333-75018352 None:intergenic 30.0%
!! TGTTCACTTTTGTCTTCTTT+AGG + chr1.2:75020116-75020135 None:intergenic 30.0%
!! TTATTTCTGCCATAGTGTAA+GGG - chr1.2:75019801-75019820 MS.gene34133:intron 30.0%
!!! GAGAGTTTTTTAAACTAACC+TGG + chr1.2:75017923-75017942 None:intergenic 30.0%
!!! GGTTCTAGGAACTTTTTTTT+GGG + chr1.2:75019650-75019669 None:intergenic 30.0%
!!! GTTCTAGGAACTTTTTTTTG+GGG + chr1.2:75019649-75019668 None:intergenic 30.0%
!!! TGGTTCTAGGAACTTTTTTT+TGG + chr1.2:75019651-75019670 None:intergenic 30.0%
AAAGGTAAGGATTCACTTTC+TGG + chr1.2:75020285-75020304 None:intergenic 35.0%
AAGGTGAAGATAAAGTCGAA+CGG + chr1.2:75020199-75020218 None:intergenic 35.0%
ACACAGATTGTGCATACATA+TGG + chr1.2:75019083-75019102 None:intergenic 35.0%
ACAGTTGTACTAGCAATAGT+GGG + chr1.2:75019565-75019584 None:intergenic 35.0%
ACCAAATCATGCTTAGAGTA+AGG + chr1.2:75020218-75020237 None:intergenic 35.0%
ACCATCCAATAAAGATCCAA+TGG - chr1.2:75018575-75018594 MS.gene34133:intron 35.0%
ACCATTGGATCTTTATTGGA+TGG + chr1.2:75018579-75018598 None:intergenic 35.0%
ACCTTACTCTAAGCATGATT+TGG - chr1.2:75020214-75020233 MS.gene34133:intron 35.0%
AGAAAGTGAATCCTTACCTT+TGG - chr1.2:75020284-75020303 MS.gene34133:CDS 35.0%
AGAACGTTACAATAAACGAG+TGG - chr1.2:75019200-75019219 MS.gene34133:intron 35.0%
ATAATTAGAGCCAGAGACAA+CGG - chr1.2:75019332-75019351 MS.gene34133:intron 35.0%
ATCCTGAAGTTCACAAAGAT+AGG + chr1.2:75018992-75019011 None:intergenic 35.0%
ATTAAGCACTTCATCTCGAT+TGG - chr1.2:75019747-75019766 MS.gene34133:intron 35.0%
CATATATTCCCACTACAATC+AGG + chr1.2:75018464-75018483 None:intergenic 35.0%
CTATAACAATGTAGATGGGA+AGG - chr1.2:75019992-75020011 MS.gene34133:CDS 35.0%
GATTACAGAAGAGCAACTAA+AGG - chr1.2:75020055-75020074 MS.gene34133:CDS 35.0%
GCCATATGATATGGTTATTG+AGG - chr1.2:75018842-75018861 MS.gene34133:intron 35.0%
TTATTCTACTATCCTCCATC+TGG + chr1.2:75019316-75019335 None:intergenic 35.0%
TTCCTATCTTTGTGAACTTC+AGG - chr1.2:75018987-75019006 MS.gene34133:intron 35.0%
TTCTTCTTCAACAGATGGTA+TGG + chr1.2:75018369-75018388 None:intergenic 35.0%
! AAGAGTACGTATTCTGAGTT+GGG + chr1.2:75018089-75018108 None:intergenic 35.0%
!! ACTTTTGTCTTCTTTAGGAG+GGG + chr1.2:75020111-75020130 None:intergenic 35.0%
!! AGAGTATTGGACTTGAAAGA+AGG + chr1.2:75019620-75019639 None:intergenic 35.0%
!! ATCTATTTTCATGACTTGGG+GGG + chr1.2:75018488-75018507 None:intergenic 35.0%
!! ATTTAAGAGTACCCTTGAAC+GGG - chr1.2:75018038-75018057 MS.gene34133:CDS 35.0%
!! CACTTTTGTCTTCTTTAGGA+GGG + chr1.2:75020112-75020131 None:intergenic 35.0%
!! TCACTTTTGTCTTCTTTAGG+AGG + chr1.2:75020113-75020132 None:intergenic 35.0%
AACTTTGTCCAACCATCCAA+TGG + chr1.2:75018547-75018566 None:intergenic 40.0%
AAGAATCAACCGATTGGCAT+TGG + chr1.2:75017971-75017990 None:intergenic 40.0%
AATCTCAACCATTGGATGGT+TGG - chr1.2:75018536-75018555 MS.gene34133:intron 40.0%
ACGTCCTAAAAGAGCAAACA+TGG + chr1.2:75018009-75018028 None:intergenic 40.0%
ACTAACCTGGATCTCTCTAA+TGG + chr1.2:75017910-75017929 None:intergenic 40.0%
ACTAGAGAACCTGATTGTAG+TGG - chr1.2:75018452-75018471 MS.gene34133:intron 40.0%
AGATGCTGGATAACTCACTA+GGG + chr1.2:75018182-75018201 None:intergenic 40.0%
AGTTGCTAGGAGCAAGAAAA+TGG - chr1.2:75018395-75018414 MS.gene34133:intron 40.0%
CATCTAATGATCCTACCTAG+TGG - chr1.2:75019380-75019399 MS.gene34133:intron 40.0%
CATGTGGCAATTCAGTTCAT+TGG + chr1.2:75018955-75018974 None:intergenic 40.0%
CTAGAGAACCTGATTGTAGT+GGG - chr1.2:75018453-75018472 MS.gene34133:intron 40.0%
CTGAGAACCATTGGTACTAT+CGG + chr1.2:75018148-75018167 None:intergenic 40.0%
GACAGTTGTACTAGCAATAG+TGG + chr1.2:75019566-75019585 None:intergenic 40.0%
GGAATACATTAGAGCACATG+TGG + chr1.2:75018971-75018990 None:intergenic 40.0%
TAACCAAACCTCTTTCCACT+AGG + chr1.2:75019398-75019417 None:intergenic 40.0%
TAGATGCTGGATAACTCACT+AGG + chr1.2:75018183-75018202 None:intergenic 40.0%
TGCATCCAACAAGTGTCTAT+GGG + chr1.2:75019505-75019524 None:intergenic 40.0%
TTCCACAAACATGAAGAGTC+TGG - chr1.2:75019693-75019712 MS.gene34133:intron 40.0%
TTGCATCCAACAAGTGTCTA+TGG + chr1.2:75019506-75019525 None:intergenic 40.0%
TTGTCATGTTTCAACCATGC+AGG + chr1.2:75019781-75019800 None:intergenic 40.0%
TTTGGCTATAAAAGGGGTGA+TGG - chr1.2:75019835-75019854 MS.gene34133:intron 40.0%
! AAGAGGTTTGGTTATCGTTG+TGG - chr1.2:75019404-75019423 MS.gene34133:intron 40.0%
! CTTGCCATGTTTGCTCTTTT+AGG - chr1.2:75018002-75018021 MS.gene34133:intron 40.0%
! GAAGAGTACGTATTCTGAGT+TGG + chr1.2:75018090-75018109 None:intergenic 40.0%
! TTTGTTGTGCCAATGCCAAT+CGG - chr1.2:75017959-75017978 MS.gene34133:intron 40.0%
!! CTTTTGTCTTCTTTAGGAGG+GGG + chr1.2:75020110-75020129 None:intergenic 40.0%
AACAGCAGTCTGAGAACCAT+TGG + chr1.2:75018157-75018176 None:intergenic 45.0%
AACCTGGATCTCTCTAATGG+TGG + chr1.2:75017907-75017926 None:intergenic 45.0%
AAGACCAATCTCCCGTTCAA+GGG + chr1.2:75018052-75018071 None:intergenic 45.0%
AAGTAGAGCATACAGCTCTG+AGG - chr1.2:75020022-75020041 MS.gene34133:CDS 45.0%
ACCTGGATCTCTCTAATGGT+GGG + chr1.2:75017906-75017925 None:intergenic 45.0%
AGAACCAAATGGAGCAGCAT+AGG - chr1.2:75019664-75019683 MS.gene34133:intron 45.0%
AGAACCATTGGTACTATCGG+TGG + chr1.2:75018145-75018164 None:intergenic 45.0%
ATGCAGGTTGCTCGAAATCT+GGG - chr1.2:75017858-75017877 MS.gene34133:CDS 45.0%
CAAACCTCTTTCCACTAGGT+AGG + chr1.2:75019394-75019413 None:intergenic 45.0%
CTACCTAGTGGAAAGAGGTT+TGG - chr1.2:75019392-75019411 MS.gene34133:intron 45.0%
CTATCCACCGATAGTACCAA+TGG - chr1.2:75018138-75018157 MS.gene34133:CDS 45.0%
CTCCAGACTCTTCATGTTTG+TGG + chr1.2:75019698-75019717 None:intergenic 45.0%
GATGACCCATAGACACTTGT+TGG - chr1.2:75019497-75019516 MS.gene34133:intron 45.0%
GTGTCTATGGGTCATCAACT+TGG + chr1.2:75019493-75019512 None:intergenic 45.0%
TCAGAGCTGTATGCTCTACT+TGG + chr1.2:75020023-75020042 None:intergenic 45.0%
TGATCCTACCTAGTGGAAAG+AGG - chr1.2:75019387-75019406 MS.gene34133:intron 45.0%
TGCTATATGACTGACAGACC+AGG + chr1.2:75018639-75018658 None:intergenic 45.0%
TTCACTACAGCAGCAAATCC+TGG - chr1.2:75018618-75018637 MS.gene34133:intron 45.0%
TTGGTACTATCGGTGGATAG+TGG + chr1.2:75018138-75018157 None:intergenic 45.0%
TTTCAACCATGCAGGCGATA+TGG + chr1.2:75019773-75019792 None:intergenic 45.0%
!! ATAAAAGGGGTGATGGTGGT+GGG - chr1.2:75019842-75019861 MS.gene34133:intron 45.0%
!! ATGCTGCTCCATTTGGTTCT+AGG + chr1.2:75019664-75019683 None:intergenic 45.0%
!! GATTCACTTTCTGGCTTCTG+AGG + chr1.2:75020276-75020295 None:intergenic 45.0%
!! TATAAAAGGGGTGATGGTGG+TGG - chr1.2:75019841-75019860 MS.gene34133:intron 45.0%
!! TGATGTGGTGTTGCGAACAT+TGG + chr1.2:75018112-75018131 None:intergenic 45.0%
!! ATTAAAATTAAACAAAAATT+GGG - chr1.2:75019257-75019276 MS.gene34133:intron 5.0%
!! TAAAATATATATTAAAGAAA+AGG + chr1.2:75018873-75018892 None:intergenic 5.0%
!! TATTAAAATTAAACAAAAAT+TGG - chr1.2:75019256-75019275 MS.gene34133:intron 5.0%
AAGATGGAGGGTTGACCAGA+TGG - chr1.2:75019298-75019317 MS.gene34133:intron 50.0%
ACCCACCATTAGAGAGATCC+AGG - chr1.2:75017902-75017921 MS.gene34133:CDS 50.0%
AGTACCCTTGAACGGGAGAT+TGG - chr1.2:75018045-75018064 MS.gene34133:CDS 50.0%
CAAGACCAATCTCCCGTTCA+AGG + chr1.2:75018053-75018072 None:intergenic 50.0%
GTTGCCTATGCTGCTCCATT+TGG + chr1.2:75019671-75019690 None:intergenic 50.0%
! GGCTATAAAAGGGGTGATGG+TGG - chr1.2:75019838-75019857 MS.gene34133:intron 50.0%
!! TAAAAGGGGTGATGGTGGTG+GGG - chr1.2:75019843-75019862 MS.gene34133:intron 50.0%
!! TCACTTTCTGGCTTCTGAGG+TGG + chr1.2:75020273-75020292 None:intergenic 50.0%
ATGGAGGGTTGACCAGATGG+AGG - chr1.2:75019301-75019320 MS.gene34133:intron 55.0%
GAACAGCAAAGTCAGCCTCC+TGG - chr1.2:75020131-75020150 MS.gene34133:intron 55.0%
! GATTGGCCATATCGCCTGCA+TGG - chr1.2:75019764-75019783 MS.gene34133:intron 55.0%
!! AAAAGGGGTGATGGTGGTGG+GGG - chr1.2:75019844-75019863 MS.gene34133:intron 55.0%
!! CTTTCTGGCTTCTGAGGTGG+TGG + chr1.2:75020270-75020289 None:intergenic 55.0%
!! GGTGGATAGTGGAGCTGATG+TGG + chr1.2:75018127-75018146 None:intergenic 55.0%
!! AAAGGGGTGATGGTGGTGGG+GGG - chr1.2:75019845-75019864 MS.gene34133:intron 60.0%
GGCAGCTGCTGCACAACTGC+AGG - chr1.2:75020076-75020095 MS.gene34133:CDS 65.0%
!! GGGTGATGGTGGTGGGGGGT+GGG - chr1.2:75019849-75019868 MS.gene34133:intron 70.0%
!! GGTGATGGTGGTGGGGGGTG+GGG - chr1.2:75019850-75019869 MS.gene34133:intron 70.0%
!! GGGGTGATGGTGGTGGGGGG+TGG - chr1.2:75019848-75019867 MS.gene34133:intron 75.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 75017858 75020314 75017858 ID=MS.gene34133
chr1.2 mRNA 75017858 75020314 75017858 ID=MS.gene34133.t1;Parent=MS.gene34133
chr1.2 exon 75020249 75020314 75020249 ID=MS.gene34133.t1.exon1;Parent=MS.gene34133.t1
chr1.2 CDS 75020249 75020314 75020249 ID=cds.MS.gene34133.t1;Parent=MS.gene34133.t1
chr1.2 exon 75019989 75020148 75019989 ID=MS.gene34133.t1.exon2;Parent=MS.gene34133.t1
chr1.2 CDS 75019989 75020148 75019989 ID=cds.MS.gene34133.t1;Parent=MS.gene34133.t1
chr1.2 exon 75018020 75018166 75018020 ID=MS.gene34133.t1.exon3;Parent=MS.gene34133.t1
chr1.2 CDS 75018020 75018166 75018020 ID=cds.MS.gene34133.t1;Parent=MS.gene34133.t1
chr1.2 exon 75017858 75017928 75017858 ID=MS.gene34133.t1.exon4;Parent=MS.gene34133.t1
chr1.2 CDS 75017858 75017928 75017858 ID=cds.MS.gene34133.t1;Parent=MS.gene34133.t1
Gene Sequence

>MS.gene34133

ATGCAGGTTGCTCGAAATCTGGGAAAAACATTGCGTGAATTTCAACCCACCATTAGAGAGATCCAGGTTAGTTTAAAAAACTCTCCAGAGTGTAGATTAAATTTGTTGTGCCAATGCCAATCGGTTGATTCTTTGATTTAGCTACTTGCCATGTTTGCTCTTTTAGGACGTTTCAAGAGAATTTAAGAGTACCCTTGAACGGGAGATTGGTCTTGATGACATTTCAAACCCAACTCAGAATACGTACTCTTCCAATGTTCGCAACACCACATCAGCTCCACTATCCACCGATAGTACCAATGGTTCTCAGACTGCTGTTGACCCTAGTGAGTTATCCAGCATCTATTTTATTTTTATCTGCGGGGCAGTTTAGAATATGAAATATGAACACGTTATTTTTCCTCATATGCATTTTATCAAATACTATTGCAACACCATCATATGCATGCTATTTTTCTCATATGTTATTTTCCCATCTTACAAAACAATCATCTGTAATTGTAAGCTACCATACCATCTGTTGAAGAAGAATTTTGTAGTTGCTAGGAGCAAGAAAATGGAATATGCAGATTGAAAGAAGAAAAACTAAAAAAAACTAGAGAACCTGATTGTAGTGGGAATATATGACCCCCCAAGTCATGAAAATAGATTTGGTGTTGTAAAAAACAACACAATTTTAATCTCAACCATTGGATGGTTGGACAAAGTTATAAGAGTACCATCCAATAAAGATCCAATGGTTATAATTGAAAACTATTGTTTCACTACAGCAGCAAATCCTGGTCTGTCAGTCATATAGCAGCAACTCTAATTGTTACGCTAAAATCCCCTTCAAAGAGATTTACTATAGTTTGGTCTACCTAAATTGTAGTCGTTAGTGATTTATCTTGTATTTACCTTCCATTATTAGATTTCCAAGTTATCATTGAAGTTTGTTGTTTGTCTTTTAAATCAGCAAATCATCAAACTCAACTTCTATCAATTGCCATATGATATGGTTATTGAGGTGTTTCCTTTTCTTTAATATATATTTTACTTTCTCATGAAAATTCATCAAATAGAACATGATAAAAACGAGGACATGCTACAAGAGTCCAATGAACTGAATTGCCACATGTGCTCTAATGTATTCCTATCTTTGTGAACTTCAGGATTTTCTTGTGCTGAAATTTCTTATCATTTGTTTCATATATGATGTGTGCTCCACCTTACTTTTATTTTGCCATATGTATGCACAATCTGTGTTTTGCAAGAATTAAAAAATAAATCACTGAAGAACAAAGGAAACTTCCACTTACATCTAGAATGACATTACTAATAGCTAAATTGGTATCATAGAGATAGAACGTTACAATAAACGAGTGGTTATGCAAGACAAGATTGAATTAAGAATTTAATTATTAAAATTAAACAAAAATTGGGATAGCTTCTATTGTAGAAAAGATGGAGGGTTGACCAGATGGAGGATAGTAGAATAATTAGAGCCAGAGACAACGGAAAATTAATATACACACTCAGATGACATCTAATGATCCTACCTAGTGGAAAGAGGTTTGGTTATCGTTGTGGTGTCGTCAAATCATGCGATTTATGTACTTCTAGATTTAGGAATAACTTGTATAATATAAAGAACCAAGTTGATGACCCATAGACACTTGTTGGATGCAAAATTCTCATTTGTCCTAGAAAGTGAACTATTACTAGCCCACTATTGCTAGTACAACTGTCACCATTTCGTTGTTCATAAATAGTTTGTGTTCCTTCTTTCAAGTCCAATACTCTTTTTTTCCCCAAAAAAAAGTTCCTAGAACCAAATGGAGCAGCATAGGCAACAATTCCACAAACATGAAGAGTCTGGAGATAATTGTTACAACATGTACATTTTATTAATTAAGCACTTCATCTCGATTGGCCATATCGCCTGCATGGTTGAAACATGACAATTATTTCTGCCATAGTGTAAGGGTTTAGTTTAATTTTGGCTATAAAAGGGGTGATGGTGGTGGGGGGTGGGGTTTAAAAACAAAGTAATGGGTGAAATAAGCATTTAAGAAGGAGGATATTGTGACATGAGAGCATATTTTCCCATCAAATTGCCAATCATGTTTGATGTCAAACATGAATATGATTATATCTATAACAATGTAGATGGGAAGGCAGATCCAAGTAGAGCATACAGCTCTGAGGATTATCTCAAGATTACAGAAGAGCAACTAAAGGCAGCTGCTGCACAACTGCAGGAGCAAACACCCCCTCCTAAAGAAGACAAAAGTGAACAGCAAAGTCAGCCTCCTGGTTAGTCTTTTTTATAGCACTTTCTCTTTTTTTCTCATTCGTTCCGTTCGACTTTATCTTCACCTTACTCTAAGCATGATTTGGTATGCAGCTAATGAAACATCTGCAACTGTGCCACCACCTCAGAAGCCAGAAAGTGAATCCTTACCTTTGGATTCATAA

Protein sequence

>MS.gene34133.t1

MQVARNLGKTLREFQPTIREIQDVSREFKSTLEREIGLDDISNPTQNTYSSNVRNTTSAPLSTDSTNGSQTAVDPNGKADPSRAYSSEDYLKITEEQLKAAAAQLQEQTPPPKEDKSEQQSQPPANETSATVPPPQKPESESLPLDS