Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052116.t1 | XP_013465400.1 | 96.6 | 147 | 5 | 0 | 1 | 147 | 1 | 147 | 1.40E-71 | 278.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052116.t1 | Q41050 | 84.6 | 143 | 22 | 0 | 1 | 143 | 1 | 143 | 2.5e-61 | 236.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052116.t1 | A0A072VMU1 | 96.6 | 147 | 5 | 0 | 1 | 147 | 1 | 147 | 1.0e-71 | 278.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052116 | MS.gene30963 | 0.848375 | 6.38E-60 | -1.69E-46 |
| MS.gene052116 | MS.gene45497 | 0.858419 | 8.34E-63 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene052116 | MS.gene45331 | PPI |
| MS.gene052116 | MS.gene064203 | PPI |
| MS.gene052116 | MS.gene043354 | PPI |
| MS.gene052116 | MS.gene35738 | PPI |
| MS.gene31538 | MS.gene052116 | PPI |
| MS.gene046061 | MS.gene052116 | PPI |
| MS.gene069932 | MS.gene052116 | PPI |
| MS.gene028992 | MS.gene052116 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052116.t1 | MTR_2g096900 | 96.599 | 147 | 5 | 0 | 1 | 147 | 1 | 147 | 6.05e-101 | 286 |
| MS.gene052116.t1 | MTR_2g096920 | 86.014 | 143 | 20 | 0 | 1 | 143 | 1 | 143 | 5.62e-76 | 223 |
| MS.gene052116.t1 | MTR_2g096920 | 88.000 | 100 | 12 | 0 | 1 | 100 | 1 | 100 | 2.29e-60 | 182 |
| MS.gene052116.t1 | MTR_4g121900 | 33.766 | 154 | 75 | 2 | 18 | 144 | 24 | 177 | 4.15e-22 | 87.0 |
| MS.gene052116.t1 | MTR_2g034550 | 33.548 | 155 | 75 | 3 | 18 | 144 | 26 | 180 | 3.07e-20 | 82.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052116.t1 | AT2G28900 | 61.224 | 147 | 57 | 0 | 1 | 147 | 1 | 147 | 5.10e-62 | 187 |
| MS.gene052116.t1 | AT4G16160 | 32.026 | 153 | 77 | 3 | 18 | 143 | 21 | 173 | 4.20e-19 | 79.3 |
| MS.gene052116.t1 | AT4G16160 | 31.613 | 155 | 77 | 3 | 18 | 143 | 21 | 175 | 5.85e-19 | 79.0 |
Find 49 sgRNAs with CRISPR-Local
Find 109 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGCCTCATAGCAGCATTTC+AGG | 0.220503 | 2.3:+5795785 | MS.gene052116:CDS |
| CTTCTCAACCTCACTGTTGA+TGG | 0.269257 | 2.3:+5795857 | MS.gene052116:CDS |
| CTTGTCTGCCTTCTCATTGT+TGG | 0.302690 | 2.3:-5797279 | None:intergenic |
| ATTGTAGTAGGTGCCATTAC+AGG | 0.330295 | 2.3:+5797302 | MS.gene052116:CDS |
| ACTGCTGCAGCATTCATAAA+TGG | 0.345573 | 2.3:+5797338 | MS.gene052116:CDS |
| CATTTAAAGAAGGTGCATAC+TGG | 0.364036 | 2.3:+5796750 | MS.gene052116:CDS |
| TAAATGGCTGGAGTTTCTAA+TGG | 0.368333 | 2.3:+5797354 | MS.gene052116:CDS |
| GTTGATGGTTTCTTGAAGAT+TGG | 0.388016 | 2.3:+5795872 | MS.gene052116:CDS |
| GGATCCGTGGCACCAGAGAC+TGG | 0.423846 | 2.3:+5796909 | MS.gene052116:CDS |
| CGCAATTGCAGCCCCTGTAA+TGG | 0.440225 | 2.3:-5797315 | None:intergenic |
| GTATATGTTGGAACAGAATA+CGG | 0.442517 | 2.3:+5796878 | MS.gene052116:CDS |
| ACATTCGGAGGTGCAGTGAC+AGG | 0.444415 | 2.3:+5797239 | MS.gene052116:CDS |
| AGGTGCAGTGACAGGGGCTC+TGG | 0.476685 | 2.3:+5797247 | MS.gene052116:CDS |
| AAGGCAGACAAGATTGTAGT+AGG | 0.478958 | 2.3:+5797290 | MS.gene052116:CDS |
| ACCCTTTCGAGCAATATGAT+AGG | 0.487140 | 2.3:-5796016 | None:intergenic |
| TGAGAGAATTACCCAGTCTC+TGG | 0.488901 | 2.3:-5796921 | None:intergenic |
| GTCAATGACCACATCGACCT+TGG | 0.493655 | 2.3:-5795822 | None:intergenic |
| ATTTAAAGAAGGTGCATACT+GGG | 0.494694 | 2.3:+5796751 | MS.gene052116:CDS |
| ACCTATCATATTGCTCGAAA+GGG | 0.494769 | 2.3:+5796015 | MS.gene052116:CDS |
| CTGCAGAAGAATGCCACATT+CGG | 0.496976 | 2.3:+5797224 | MS.gene052116:intron |
| GCTATAGCTGGCGTATATGT+TGG | 0.502894 | 2.3:+5796866 | MS.gene052116:CDS |
| CTGCAGCATTCATAAATGGC+TGG | 0.512276 | 2.3:+5797342 | MS.gene052116:CDS |
| TACCTATCATATTGCTCGAA+AGG | 0.512817 | 2.3:+5796014 | MS.gene052116:CDS |
| TCAATGACCACATCGACCTT+GGG | 0.517343 | 2.3:-5795821 | None:intergenic |
| TGTCACTGCACCTCCGAATG+TGG | 0.517688 | 2.3:-5797237 | None:intergenic |
| TTGTAGTAGGTGCCATTACA+GGG | 0.523008 | 2.3:+5797303 | MS.gene052116:CDS |
| AGGATCAGTGTCTTCTCCCA+AGG | 0.530325 | 2.3:+5795805 | MS.gene052116:CDS |
| TATATGTTGGAACAGAATAC+GGG | 0.532988 | 2.3:+5796879 | MS.gene052116:CDS |
| CATTCGGAGGTGCAGTGACA+GGG | 0.541060 | 2.3:+5797240 | MS.gene052116:CDS |
| ACGCTTACAGGAGCTATAGC+TGG | 0.552930 | 2.3:+5796854 | MS.gene052116:intron |
| GGTCGATGTGGTCATTGACA+TGG | 0.564917 | 2.3:+5795826 | MS.gene052116:CDS |
| GATCCTGAAATGCTGCTATG+AGG | 0.565334 | 2.3:-5795788 | None:intergenic |
| ATCCTCTGCAAGTGCCCTTG+TGG | 0.568133 | 2.3:-5795992 | None:intergenic |
| CTGAAGAAGACATTTAAAGA+AGG | 0.586357 | 2.3:+5796740 | MS.gene052116:CDS |
| TTACCCAGTCTCTGGTGCCA+CGG | 0.593471 | 2.3:-5796913 | None:intergenic |
| GATCCGTGGCACCAGAGACT+GGG | 0.594640 | 2.3:+5796910 | MS.gene052116:CDS |
| AGCCACAAGGGCACTTGCAG+AGG | 0.596020 | 2.3:+5795990 | MS.gene052116:CDS |
| ATCTGCTGCCAACAATGAGA+AGG | 0.616807 | 2.3:+5797271 | MS.gene052116:CDS |
| GAACAGAATACGGGGTAGAG+AGG | 0.617900 | 2.3:+5796888 | MS.gene052116:CDS |
| GTCTTCTCCCAAGGTCGATG+TGG | 0.618468 | 2.3:+5795814 | MS.gene052116:CDS |
| GTCGATGTGGTCATTGACAT+GGG | 0.620754 | 2.3:+5795827 | MS.gene052116:CDS |
| CAGAAGAATGCCACATTCGG+AGG | 0.625948 | 2.3:+5797227 | MS.gene052116:intron |
| ATTCGGAGGTGCAGTGACAG+GGG | 0.629823 | 2.3:+5797241 | MS.gene052116:CDS |
| TCAACAGTGAGGTTGAGAAG+TGG | 0.636785 | 2.3:-5795854 | None:intergenic |
| TACGGGGTAGAGAGGATCCG+TGG | 0.679908 | 2.3:+5796896 | MS.gene052116:CDS |
| TTTAAAGAAGGTGCATACTG+GGG | 0.700970 | 2.3:+5796752 | MS.gene052116:CDS |
| TGTAGTAGGTGCCATTACAG+GGG | 0.704939 | 2.3:+5797304 | MS.gene052116:CDS |
| TCAAGAAACCATCAACAGTG+AGG | 0.715759 | 2.3:-5795865 | None:intergenic |
| ATATGTTGGAACAGAATACG+GGG | 0.766118 | 2.3:+5796880 | MS.gene052116:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATATTAAAAATTATATTTT+AGG | - | chr2.3:5796309-5796328 | None:intergenic | 0.0% |
| !!! | AAATTATATTTTAGGAGTAA+AGG | - | chr2.3:5796301-5796320 | None:intergenic | 15.0% |
| !! | AAAAGATGAAAACTTTGATT+CGG | + | chr2.3:5796083-5796102 | MS.gene052116:intron | 20.0% |
| !! | AACTTAAATTGAACAATAGA+AGG | - | chr2.3:5797154-5797173 | None:intergenic | 20.0% |
| !! | TTTATCAAAGTTAAAGCATA+TGG | - | chr2.3:5796537-5796556 | None:intergenic | 20.0% |
| !!! | AAATGTGTTAACTTTGTTTT+AGG | + | chr2.3:5797116-5797135 | MS.gene052116:intron | 20.0% |
| !!! | ATGCTTTAACTTTGATAAAT+AGG | + | chr2.3:5796538-5796557 | MS.gene052116:intron | 20.0% |
| !!! | TTATCATGATTGATTCATTT+GGG | + | chr2.3:5796271-5796290 | MS.gene052116:intron | 20.0% |
| !!! | TTTTGGAGATTTTAACAAAA+GGG | - | chr2.3:5796067-5796086 | None:intergenic | 20.0% |
| ! | AAAGATGAAAACTTTGATTC+GGG | + | chr2.3:5796084-5796103 | MS.gene052116:intron | 25.0% |
| ! | AAGAATCTAAATCCTGAAAA+GGG | + | chr2.3:5796642-5796661 | MS.gene052116:intron | 25.0% |
| ! | AGACAAAATGTCTATTGAAT+GGG | - | chr2.3:5796675-5796694 | None:intergenic | 25.0% |
| ! | CAATAATGTGATTTGAACTT+GGG | + | chr2.3:5796390-5796409 | MS.gene052116:intron | 25.0% |
| ! | GAAAACACTTAAAATAGACT+TGG | + | chr2.3:5796955-5796974 | MS.gene052116:intron | 25.0% |
| ! | TAAGAATCTAAATCCTGAAA+AGG | + | chr2.3:5796641-5796660 | MS.gene052116:intron | 25.0% |
| ! | TAGACAAAATGTCTATTGAA+TGG | - | chr2.3:5796676-5796695 | None:intergenic | 25.0% |
| !! | CTTATCATGATTGATTCATT+TGG | + | chr2.3:5796270-5796289 | MS.gene052116:intron | 25.0% |
| !! | GAATCAAAGTTTTCATCTTT+TGG | - | chr2.3:5796084-5796103 | None:intergenic | 25.0% |
| !! | TATCATGATTGATTCATTTG+GGG | + | chr2.3:5796272-5796291 | MS.gene052116:intron | 25.0% |
| !!! | CTTTTGGAGATTTTAACAAA+AGG | - | chr2.3:5796068-5796087 | None:intergenic | 25.0% |
| AAATGAGAGAATCCGAATTT+AGG | - | chr2.3:5796453-5796472 | None:intergenic | 30.0% | |
| AAATTGAACAATAGAAGGCA+TGG | - | chr2.3:5797149-5797168 | None:intergenic | 30.0% | |
| AATGAGAGAATCCGAATTTA+GGG | - | chr2.3:5796452-5796471 | None:intergenic | 30.0% | |
| CATTTGTGAAGATCTTTGTT+TGG | + | chr2.3:5796141-5796160 | MS.gene052116:intron | 30.0% | |
| CTGAAGAAGACATTTAAAGA+AGG | + | chr2.3:5796740-5796759 | MS.gene052116:CDS | 30.0% | |
| GCAATAATGTGATTTGAACT+TGG | + | chr2.3:5796389-5796408 | MS.gene052116:intron | 30.0% | |
| GTATATGTTGGAACAGAATA+CGG | + | chr2.3:5796878-5796897 | MS.gene052116:CDS | 30.0% | |
| TATATGTTGGAACAGAATAC+GGG | + | chr2.3:5796879-5796898 | MS.gene052116:CDS | 30.0% | |
| TCCTAGAAAAGAATAATGAC+AGG | + | chr2.3:5796421-5796440 | MS.gene052116:intron | 30.0% | |
| TTGAGCTGTTTGATCAAAAT+CGG | + | chr2.3:5796506-5796525 | MS.gene052116:intron | 30.0% | |
| ! | ATTTAAAGAAGGTGCATACT+GGG | + | chr2.3:5796751-5796770 | MS.gene052116:CDS | 30.0% |
| ! | TCCTGTCATTATTCTTTTCT+AGG | - | chr2.3:5796425-5796444 | None:intergenic | 30.0% |
| !! | TAGAGAGAGCACTTTATTTA+TGG | + | chr2.3:5796998-5797017 | MS.gene052116:intron | 30.0% |
| AACAAGACCTCTCATTAACA+AGG | - | chr2.3:5796716-5796735 | None:intergenic | 35.0% | |
| ACAAGGAACAAAGCATATCA+TGG | - | chr2.3:5796699-5796718 | None:intergenic | 35.0% | |
| ACCTATCATATTGCTCGAAA+GGG | + | chr2.3:5796015-5796034 | MS.gene052116:CDS | 35.0% | |
| ACTGACATATCAAGATCAGA+TGG | - | chr2.3:5796589-5796608 | None:intergenic | 35.0% | |
| ACTGGGTAATTCTCTCAATA+GGG | + | chr2.3:5796927-5796946 | MS.gene052116:intron | 35.0% | |
| AGAGATTAGATGCCATCATA+TGG | - | chr2.3:5797033-5797052 | None:intergenic | 35.0% | |
| ATATGTTGGAACAGAATACG+GGG | + | chr2.3:5796880-5796899 | MS.gene052116:CDS | 35.0% | |
| ATGAGAGAATCCGAATTTAG+GGG | - | chr2.3:5796451-5796470 | None:intergenic | 35.0% | |
| CAAAAGGGTTATAGCAAAAG+TGG | - | chr2.3:5796052-5796071 | None:intergenic | 35.0% | |
| CTTTGTTCCTTGTTAATGAG+AGG | + | chr2.3:5796706-5796725 | MS.gene052116:intron | 35.0% | |
| TAATGTGATTTGAACTTGGG+AGG | + | chr2.3:5796393-5796412 | MS.gene052116:intron | 35.0% | |
| TACCTATCATATTGCTCGAA+AGG | + | chr2.3:5796014-5796033 | MS.gene052116:CDS | 35.0% | |
| TGGATTTGTCTTCCATATGA+TGG | + | chr2.3:5797018-5797037 | MS.gene052116:intron | 35.0% | |
| TTGGTATGTATGCATCTTTG+AGG | + | chr2.3:5796367-5796386 | MS.gene052116:intron | 35.0% | |
| ! | ATTTTCCTTTCTACGCTTAC+AGG | + | chr2.3:5796842-5796861 | MS.gene052116:intron | 35.0% |
| ! | CATTTAAAGAAGGTGCATAC+TGG | + | chr2.3:5796750-5796769 | MS.gene052116:CDS | 35.0% |
| ! | TTTAAAGAAGGTGCATACTG+GGG | + | chr2.3:5796752-5796771 | MS.gene052116:CDS | 35.0% |
| !! | GTTGATGGTTTCTTGAAGAT+TGG | + | chr2.3:5795872-5795891 | MS.gene052116:CDS | 35.0% |
| AAGGCAGACAAGATTGTAGT+AGG | + | chr2.3:5797290-5797309 | MS.gene052116:CDS | 40.0% | |
| ACCCTTTCGAGCAATATGAT+AGG | - | chr2.3:5796019-5796038 | None:intergenic | 40.0% | |
| ACTGCTGCAGCATTCATAAA+TGG | + | chr2.3:5797338-5797357 | MS.gene052116:CDS | 40.0% | |
| ATCTAAATCCTGAAAAGGGC+AGG | + | chr2.3:5796646-5796665 | MS.gene052116:intron | 40.0% | |
| CTTCTAAACATGTCTGTTCC+AGG | + | chr2.3:5796187-5796206 | MS.gene052116:intron | 40.0% | |
| GACTGGGTAATTCTCTCAAT+AGG | + | chr2.3:5796926-5796945 | MS.gene052116:intron | 40.0% | |
| GCAGTACATCAAAAGACCAA+GGG | - | chr2.3:5797208-5797227 | None:intergenic | 40.0% | |
| TCAAAAGACCAAGGGAACAA+CGG | - | chr2.3:5797200-5797219 | None:intergenic | 40.0% | |
| TCAAGAAACCATCAACAGTG+AGG | - | chr2.3:5795868-5795887 | None:intergenic | 40.0% | |
| TGCAGTACATCAAAAGACCA+AGG | - | chr2.3:5797209-5797228 | None:intergenic | 40.0% | |
| TTCACGTAATCACACACTTG+CGG | - | chr2.3:5796618-5796637 | None:intergenic | 40.0% | |
| ! | CATGATTGATTCATTTGGGG+TGG | + | chr2.3:5796275-5796294 | MS.gene052116:intron | 40.0% |
| !! | ATTGTAGTAGGTGCCATTAC+AGG | + | chr2.3:5797302-5797321 | MS.gene052116:CDS | 40.0% |
| !! | TTGTAGTAGGTGCCATTACA+GGG | + | chr2.3:5797303-5797322 | MS.gene052116:CDS | 40.0% |
| ATCTGCTGCCAACAATGAGA+AGG | + | chr2.3:5797271-5797290 | MS.gene052116:CDS | 45.0% | |
| ATGCCTCATAGCAGCATTTC+AGG | + | chr2.3:5795785-5795804 | MS.gene052116:CDS | 45.0% | |
| CTGCAGAAGAATGCCACATT+CGG | + | chr2.3:5797224-5797243 | MS.gene052116:intron | 45.0% | |
| CTGCAGCATTCATAAATGGC+TGG | + | chr2.3:5797342-5797361 | MS.gene052116:CDS | 45.0% | |
| CTTCTCAACCTCACTGTTGA+TGG | + | chr2.3:5795857-5795876 | MS.gene052116:CDS | 45.0% | |
| CTTGTCTGCCTTCTCATTGT+TGG | - | chr2.3:5797282-5797301 | None:intergenic | 45.0% | |
| GACAGGAAAGCCCCTAAATT+CGG | + | chr2.3:5796438-5796457 | MS.gene052116:intron | 45.0% | |
| GATCCTGAAATGCTGCTATG+AGG | - | chr2.3:5795791-5795810 | None:intergenic | 45.0% | |
| GATTCTTACCGTTGTTCCCT+TGG | + | chr2.3:5797189-5797208 | MS.gene052116:intron | 45.0% | |
| GCTATAGCTGGCGTATATGT+TGG | + | chr2.3:5796866-5796885 | MS.gene052116:CDS | 45.0% | |
| GTCGATGTGGTCATTGACAT+GGG | + | chr2.3:5795827-5795846 | MS.gene052116:CDS | 45.0% | |
| TAGCTCCTGTAAGCGTAGAA+AGG | - | chr2.3:5796850-5796869 | None:intergenic | 45.0% | |
| TCAACAGTGAGGTTGAGAAG+TGG | - | chr2.3:5795857-5795876 | None:intergenic | 45.0% | |
| TCAATGACCACATCGACCTT+GGG | - | chr2.3:5795824-5795843 | None:intergenic | 45.0% | |
| TCACTACTTGAGACACTTCC+TGG | - | chr2.3:5796208-5796227 | None:intergenic | 45.0% | |
| TGAGAGAATTACCCAGTCTC+TGG | - | chr2.3:5796924-5796943 | None:intergenic | 45.0% | |
| !! | TGTAGTAGGTGCCATTACAG+GGG | + | chr2.3:5797304-5797323 | MS.gene052116:CDS | 45.0% |
| !!! | TTTTCAGGTTGCAGCCACAA+GGG | + | chr2.3:5795978-5795997 | MS.gene052116:intron | 45.0% |
| !!! | TTTTTCAGGTTGCAGCCACA+AGG | + | chr2.3:5795977-5795996 | MS.gene052116:intron | 45.0% |
| !! | AAAAATAAAAAATAAAAAGT+TGG | - | chr2.3:5795959-5795978 | None:intergenic | 5.0% |
| !! | ATATATAAATTACTTATAAT+TGG | - | chr2.3:5796348-5796367 | None:intergenic | 5.0% |
| !! | ATTATAAGTAATTTATATAT+TGG | + | chr2.3:5796348-5796367 | MS.gene052116:intron | 5.0% |
| !!! | AAATAATAATATATTGATTT+TGG | - | chr2.3:5796120-5796139 | None:intergenic | 5.0% |
| !!! | TTTATTTTTTATTTTTTTTC+AGG | + | chr2.3:5795963-5795982 | MS.gene052116:intron | 5.0% |
| ACGCTTACAGGAGCTATAGC+TGG | + | chr2.3:5796854-5796873 | MS.gene052116:intron | 50.0% | |
| AGGATCAGTGTCTTCTCCCA+AGG | + | chr2.3:5795805-5795824 | MS.gene052116:CDS | 50.0% | |
| CAGAAGAATGCCACATTCGG+AGG | + | chr2.3:5797227-5797246 | MS.gene052116:intron | 50.0% | |
| GAACAGAATACGGGGTAGAG+AGG | + | chr2.3:5796888-5796907 | MS.gene052116:CDS | 50.0% | |
| GGTCGATGTGGTCATTGACA+TGG | + | chr2.3:5795826-5795845 | MS.gene052116:CDS | 50.0% | |
| GTCAATGACCACATCGACCT+TGG | - | chr2.3:5795825-5795844 | None:intergenic | 50.0% | |
| ! | ATGGGATTCCTGCCCTTTTC+AGG | - | chr2.3:5796657-5796676 | None:intergenic | 50.0% |
| ATCCTCTGCAAGTGCCCTTG+TGG | - | chr2.3:5795995-5796014 | None:intergenic | 55.0% | |
| CGCAATTGCAGCCCCTGTAA+TGG | - | chr2.3:5797318-5797337 | None:intergenic | 55.0% | |
| GTCTTCTCCCAAGGTCGATG+TGG | + | chr2.3:5795814-5795833 | MS.gene052116:CDS | 55.0% | |
| TGTCACTGCACCTCCGAATG+TGG | - | chr2.3:5797240-5797259 | None:intergenic | 55.0% | |
| ! | ACATTCGGAGGTGCAGTGAC+AGG | + | chr2.3:5797239-5797258 | MS.gene052116:CDS | 55.0% |
| ! | ATTCGGAGGTGCAGTGACAG+GGG | + | chr2.3:5797241-5797260 | MS.gene052116:CDS | 55.0% |
| ! | CATTCGGAGGTGCAGTGACA+GGG | + | chr2.3:5797240-5797259 | MS.gene052116:CDS | 55.0% |
| ! | TTACCCAGTCTCTGGTGCCA+CGG | - | chr2.3:5796916-5796935 | None:intergenic | 55.0% |
| GATCCGTGGCACCAGAGACT+GGG | + | chr2.3:5796910-5796929 | MS.gene052116:CDS | 60.0% | |
| TACGGGGTAGAGAGGATCCG+TGG | + | chr2.3:5796896-5796915 | MS.gene052116:CDS | 60.0% | |
| !! | AGCCACAAGGGCACTTGCAG+AGG | + | chr2.3:5795990-5796009 | MS.gene052116:CDS | 60.0% |
| AGGTGCAGTGACAGGGGCTC+TGG | + | chr2.3:5797247-5797266 | MS.gene052116:CDS | 65.0% | |
| GGATCCGTGGCACCAGAGAC+TGG | + | chr2.3:5796909-5796928 | MS.gene052116:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 5795785 | 5797373 | 5795785 | ID=MS.gene052116 |
| chr2.3 | mRNA | 5795785 | 5797373 | 5795785 | ID=MS.gene052116.t1;Parent=MS.gene052116 |
| chr2.3 | exon | 5795785 | 5795898 | 5795785 | ID=MS.gene052116.t1.exon1;Parent=MS.gene052116.t1 |
| chr2.3 | CDS | 5795785 | 5795898 | 5795785 | ID=cds.MS.gene052116.t1;Parent=MS.gene052116.t1 |
| chr2.3 | exon | 5795985 | 5796036 | 5795985 | ID=MS.gene052116.t1.exon2;Parent=MS.gene052116.t1 |
| chr2.3 | CDS | 5795985 | 5796036 | 5795985 | ID=cds.MS.gene052116.t1;Parent=MS.gene052116.t1 |
| chr2.3 | exon | 5796209 | 5796240 | 5796209 | ID=MS.gene052116.t1.exon3;Parent=MS.gene052116.t1 |
| chr2.3 | CDS | 5796209 | 5796240 | 5796209 | ID=cds.MS.gene052116.t1;Parent=MS.gene052116.t1 |
| chr2.3 | exon | 5796740 | 5796773 | 5796740 | ID=MS.gene052116.t1.exon4;Parent=MS.gene052116.t1 |
| chr2.3 | CDS | 5796740 | 5796773 | 5796740 | ID=cds.MS.gene052116.t1;Parent=MS.gene052116.t1 |
| chr2.3 | exon | 5796864 | 5796931 | 5796864 | ID=MS.gene052116.t1.exon5;Parent=MS.gene052116.t1 |
| chr2.3 | CDS | 5796864 | 5796931 | 5796864 | ID=cds.MS.gene052116.t1;Parent=MS.gene052116.t1 |
| chr2.3 | exon | 5797230 | 5797373 | 5797230 | ID=MS.gene052116.t1.exon6;Parent=MS.gene052116.t1 |
| chr2.3 | CDS | 5797230 | 5797373 | 5797230 | ID=cds.MS.gene052116.t1;Parent=MS.gene052116.t1 |
| Gene Sequence |
| Protein sequence |
