Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene030303.t1 | XP_003620871.1 | 97.5 | 238 | 6 | 0 | 1 | 238 | 1 | 238 | 7.30E-131 | 476.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene030303.t1 | Q9C5D7 | 62.8 | 223 | 83 | 0 | 15 | 237 | 9 | 231 | 1.0e-80 | 301.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene030303.t1 | G7KJ71 | 97.5 | 238 | 6 | 0 | 1 | 238 | 1 | 238 | 5.3e-131 | 476.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene028389 | MS.gene030303 | PPI |
MS.gene053535 | MS.gene030303 | PPI |
MS.gene030303 | MS.gene26463 | PPI |
MS.gene030303 | MS.gene047856 | PPI |
MS.gene030303 | MS.gene059423 | PPI |
MS.gene030303 | MS.gene28756 | PPI |
MS.gene030303 | MS.gene053539 | PPI |
MS.gene030303 | MS.gene35069 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene030303.t1 | MTR_6g091680 | 97.479 | 238 | 6 | 0 | 1 | 238 | 1 | 238 | 1.03e-171 | 472 |
MS.gene030303.t1 | MTR_8g021225 | 70.404 | 223 | 65 | 1 | 15 | 236 | 11 | 233 | 5.39e-114 | 326 |
MS.gene030303.t1 | MTR_8g101900 | 71.429 | 231 | 66 | 0 | 8 | 238 | 5 | 235 | 1.96e-109 | 315 |
MS.gene030303.t1 | MTR_4g085590 | 55.804 | 224 | 98 | 1 | 15 | 237 | 23 | 246 | 7.35e-91 | 268 |
MS.gene030303.t1 | MTR_4g094815 | 57.080 | 226 | 94 | 2 | 15 | 238 | 24 | 248 | 5.92e-90 | 266 |
MS.gene030303.t1 | MTR_4g094925 | 54.464 | 224 | 101 | 1 | 15 | 237 | 19 | 242 | 2.77e-86 | 256 |
MS.gene030303.t1 | MTR_4g094898 | 56.637 | 226 | 95 | 2 | 14 | 237 | 23 | 247 | 2.84e-81 | 243 |
MS.gene030303.t1 | MTR_4g094812 | 56.889 | 225 | 94 | 2 | 15 | 237 | 22 | 245 | 5.52e-81 | 243 |
MS.gene030303.t1 | MTR_4g094925 | 54.545 | 187 | 84 | 1 | 52 | 237 | 25 | 211 | 8.92e-73 | 221 |
MS.gene030303.t1 | MTR_4g094368 | 49.784 | 231 | 106 | 5 | 8 | 235 | 4 | 227 | 1.49e-72 | 221 |
MS.gene030303.t1 | MTR_4g094898 | 57.692 | 182 | 74 | 2 | 58 | 237 | 6 | 186 | 2.91e-65 | 201 |
MS.gene030303.t1 | MTR_2g070410 | 37.037 | 216 | 127 | 3 | 21 | 236 | 91 | 297 | 1.65e-46 | 156 |
MS.gene030303.t1 | MTR_2g070410 | 38.953 | 172 | 101 | 2 | 21 | 192 | 91 | 258 | 7.65e-36 | 128 |
MS.gene030303.t1 | MTR_6g091635 | 94.118 | 34 | 2 | 0 | 198 | 231 | 1 | 34 | 2.65e-16 | 71.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene030303.t1 | AT4G26220 | 62.780 | 223 | 83 | 0 | 15 | 237 | 9 | 231 | 1.03e-103 | 300 |
MS.gene030303.t1 | AT4G34050 | 55.111 | 225 | 100 | 1 | 15 | 238 | 35 | 259 | 7.64e-92 | 271 |
MS.gene030303.t1 | AT4G34050 | 55.111 | 225 | 100 | 1 | 15 | 238 | 62 | 286 | 1.13e-91 | 271 |
MS.gene030303.t1 | AT1G67980 | 54.425 | 226 | 96 | 3 | 15 | 237 | 10 | 231 | 3.07e-84 | 251 |
MS.gene030303.t1 | AT1G24735 | 53.304 | 227 | 99 | 4 | 15 | 237 | 16 | 239 | 8.95e-80 | 239 |
MS.gene030303.t1 | AT1G67990 | 50.442 | 226 | 106 | 3 | 15 | 237 | 10 | 232 | 1.32e-74 | 226 |
MS.gene030303.t1 | AT1G24735 | 44.404 | 277 | 98 | 4 | 15 | 237 | 16 | 290 | 1.87e-73 | 225 |
MS.gene030303.t1 | AT1G24735 | 56.425 | 179 | 75 | 2 | 60 | 237 | 18 | 194 | 1.23e-69 | 212 |
MS.gene030303.t1 | AT1G67980 | 52.663 | 169 | 69 | 4 | 73 | 237 | 2 | 163 | 1.30e-52 | 168 |
MS.gene030303.t1 | AT3G62000 | 36.596 | 235 | 137 | 5 | 4 | 236 | 53 | 277 | 3.51e-47 | 157 |
MS.gene030303.t1 | AT3G61990 | 37.179 | 234 | 134 | 6 | 4 | 236 | 68 | 289 | 2.06e-45 | 153 |
MS.gene030303.t1 | AT3G62000 | 36.000 | 225 | 132 | 5 | 4 | 226 | 53 | 267 | 3.90e-40 | 141 |
MS.gene030303.t1 | AT4G34050 | 50.806 | 124 | 60 | 1 | 116 | 238 | 25 | 148 | 1.28e-39 | 134 |
Find 39 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTCTCCAGCTCTACCAATTT+TGG | 0.186253 | 6.2:-88799578 | MS.gene030303:CDS |
GACAGGAAAACTTATGAAAT+TGG | 0.203207 | 6.2:-88799652 | MS.gene030303:CDS |
TCTAGCAGTTTATCCAAAAT+TGG | 0.261995 | 6.2:+88799565 | None:intergenic |
TCAAATGTTCCTTCATTTGT+AGG | 0.273170 | 6.2:+88798729 | None:intergenic |
AATGGTATTGCAGTATATAT+TGG | 0.318254 | 6.2:-88800371 | MS.gene030303:intron |
TGCACTGGAACTTTCTCTTC+AGG | 0.373995 | 6.2:+88798582 | None:intergenic |
TTGAGAGGCTCAGGCTCTCT+AGG | 0.392368 | 6.2:+88800334 | None:intergenic |
CTCAGCTCTTTGAGAGGCTC+AGG | 0.393899 | 6.2:+88800325 | None:intergenic |
CCATGAAAGACTGATAAAAC+TGG | 0.437778 | 6.2:-88798664 | MS.gene030303:CDS |
GAATTTGCTCTCACTTCTGT+TGG | 0.447217 | 6.2:-88798495 | MS.gene030303:CDS |
TTGATGCAGCCTACAAATGA+AGG | 0.455037 | 6.2:-88798738 | MS.gene030303:intron |
TTATCCAAAATTGGTAGAGC+TGG | 0.462919 | 6.2:+88799574 | None:intergenic |
GCTCTCACTTCTGTTGGTGA+TGG | 0.468535 | 6.2:-88798489 | MS.gene030303:CDS |
ATGCAAACCTTTCCATCGTC+GGG | 0.470357 | 6.2:+88799776 | None:intergenic |
CTACCTGTCATAAGAAAGGC+TGG | 0.478364 | 6.2:-88799628 | MS.gene030303:CDS |
CTGATAAAACTGGTCAAAGT+TGG | 0.482685 | 6.2:-88798654 | MS.gene030303:CDS |
ATAGCAACTTTACCTGAGGC+TGG | 0.500969 | 6.2:-88799899 | MS.gene030303:CDS |
ACTCCAGCCTTTCTTATGAC+AGG | 0.521115 | 6.2:+88799625 | None:intergenic |
TCCTCGCTCTGCAATATGAC+AGG | 0.524552 | 6.2:+88800489 | None:intergenic |
ATAAAACTGGTCAAAGTTGG+TGG | 0.527329 | 6.2:-88798651 | MS.gene030303:CDS |
TGGACTACCTGTCATAAGAA+AGG | 0.529586 | 6.2:-88799632 | MS.gene030303:CDS |
CGGGAATGTTGAGTGCAGTA+AGG | 0.537602 | 6.2:+88799795 | None:intergenic |
CTCTGTGGTCTAGAATGCAC+TGG | 0.539673 | 6.2:+88798567 | None:intergenic |
GTGATTAGTTGACCAGCCTC+AGG | 0.545407 | 6.2:+88799887 | None:intergenic |
GCATTCCTCAGCTCTTTGAG+AGG | 0.548288 | 6.2:+88800319 | None:intergenic |
TTACAGCCATAGATATTGAC+AGG | 0.548694 | 6.2:-88799669 | MS.gene030303:CDS |
TATGGGGTGGACGTGTTGCA+TGG | 0.558956 | 6.2:-88798605 | MS.gene030303:CDS |
TATGCAAACCTTTCCATCGT+CGG | 0.561122 | 6.2:+88799775 | None:intergenic |
TGAGAGGCTCAGGCTCTCTA+GGG | 0.570036 | 6.2:+88800335 | None:intergenic |
CAACATTCCCGACGATGGAA+AGG | 0.570116 | 6.2:-88799783 | MS.gene030303:intron |
TGTCATAAGAAAGGCTGGAG+TGG | 0.586841 | 6.2:-88799623 | MS.gene030303:CDS |
TCAATTGCTGCTAGTCTCTG+TGG | 0.590797 | 6.2:+88798552 | None:intergenic |
ATGCCACTGAGAATCATCCT+TGG | 0.600903 | 6.2:-88800300 | MS.gene030303:intron |
TCCTGTCATATTGCAGAGCG+AGG | 0.609373 | 6.2:-88800490 | MS.gene030303:CDS |
GCACTCAACATTCCCGACGA+TGG | 0.616697 | 6.2:-88799788 | MS.gene030303:CDS |
TTTCATAGCAACTTTACCTG+AGG | 0.618675 | 6.2:-88799903 | MS.gene030303:CDS |
CTGAGCCTCTCAAAGAGCTG+AGG | 0.634468 | 6.2:-88800324 | MS.gene030303:CDS |
GCAGAGCGAGGACTTAACAA+AGG | 0.664516 | 6.2:-88800478 | MS.gene030303:intron |
TTACCAAGGATGATTCTCAG+TGG | 0.746004 | 6.2:+88800297 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AATTTTTTTATACATGTCAT+AGG | + | chr6.2:88799547-88799566 | None:intergenic | 15.0% |
!! | ACAATATCGAATTATATCTA+AGG | + | chr6.2:88799246-88799265 | None:intergenic | 20.0% |
!! | CATAGTAAGAAGAAATAAAA+GGG | + | chr6.2:88798565-88798584 | None:intergenic | 20.0% |
!! | CTTAAAATGGAAATAGATTT+AGG | + | chr6.2:88799658-88799677 | None:intergenic | 20.0% |
!! | CTTCAAGATTATGATTTAAT+TGG | - | chr6.2:88798767-88798786 | MS.gene030303:intron | 20.0% |
!! | GAATAAAAGATTGTAGAAAA+TGG | + | chr6.2:88800096-88800115 | None:intergenic | 20.0% |
!!! | ATATATGACAACATTTTATG+GGG | - | chr6.2:88800365-88800384 | MS.gene030303:intron | 20.0% |
!!! | CATATATGACAACATTTTAT+GGG | - | chr6.2:88800364-88800383 | MS.gene030303:intron | 20.0% |
!!! | TATGTTATCAACAACTTTTA+GGG | + | chr6.2:88799715-88799734 | None:intergenic | 20.0% |
!!! | TCATATATGACAACATTTTA+TGG | - | chr6.2:88800363-88800382 | MS.gene030303:intron | 20.0% |
!!! | TTCTCTTTTTATTATCTGTT+TGG | - | chr6.2:88799461-88799480 | MS.gene030303:intron | 20.0% |
! | AAAACGTTAGTATATTGTGA+TGG | - | chr6.2:88799031-88799050 | MS.gene030303:intron | 25.0% |
! | AATGGTATTGCAGTATATAT+TGG | - | chr6.2:88798615-88798634 | MS.gene030303:CDS | 25.0% |
! | AGAAGATAGAATAATTACCA+AGG | + | chr6.2:88798706-88798725 | None:intergenic | 25.0% |
! | AGTTACCAATTTAGTTAAGT+AGG | + | chr6.2:88800178-88800197 | None:intergenic | 25.0% |
! | CTAGAAATGTGAACTTAAAA+TGG | + | chr6.2:88799671-88799690 | None:intergenic | 25.0% |
! | GCATAGTAAGAAGAAATAAA+AGG | + | chr6.2:88798566-88798585 | None:intergenic | 25.0% |
!! | GTATGTTATCAACAACTTTT+AGG | + | chr6.2:88799716-88799735 | None:intergenic | 25.0% |
!!! | ATACATTTCTAGTAGATCTT+CGG | - | chr6.2:88799732-88799751 | MS.gene030303:intron | 25.0% |
!!! | CAATGTACTGATATTTTTTG+TGG | - | chr6.2:88800218-88800237 | MS.gene030303:intron | 25.0% |
!!! | CGTTTTAAAATTGAACAGAT+CGG | + | chr6.2:88799017-88799036 | None:intergenic | 25.0% |
!!! | TTCTGCAATGTTTTGAAATT+CGG | - | chr6.2:88798722-88798741 | MS.gene030303:CDS | 25.0% |
!!! | TTGGTTTTCATATTCATTCA+GGG | - | chr6.2:88799059-88799078 | MS.gene030303:intron | 25.0% |
ACACAATAGTAAGATTCTTG+AGG | + | chr6.2:88800145-88800164 | None:intergenic | 30.0% | |
AGATTCAACGCAAATCAATA+CGG | - | chr6.2:88798918-88798937 | MS.gene030303:intron | 30.0% | |
GACAGGAAAACTTATGAAAT+TGG | - | chr6.2:88799334-88799353 | MS.gene030303:intron | 30.0% | |
GTATATTGTGATGGTTAACT+TGG | - | chr6.2:88799040-88799059 | MS.gene030303:intron | 30.0% | |
TCAAATGTTCCTTCATTTGT+AGG | + | chr6.2:88800260-88800279 | None:intergenic | 30.0% | |
TCTAGCAGTTTATCCAAAAT+TGG | + | chr6.2:88799424-88799443 | None:intergenic | 30.0% | |
TTCGACCTACTTAACTAAAT+TGG | - | chr6.2:88800170-88800189 | MS.gene030303:intron | 30.0% | |
TTCGGTTAAGGTAATTAGTT+AGG | - | chr6.2:88799750-88799769 | MS.gene030303:intron | 30.0% | |
! | ACAGGATTTTTGTAGATTGA+TGG | + | chr6.2:88798482-88798501 | None:intergenic | 30.0% |
! | AGTTTTCCTGTCAATATCTA+TGG | + | chr6.2:88799326-88799345 | None:intergenic | 30.0% |
! | TCTCATTCTATCGTTTTACA+AGG | + | chr6.2:88799868-88799887 | None:intergenic | 30.0% |
! | TGGTTTTCATATTCATTCAG+GGG | - | chr6.2:88799060-88799079 | MS.gene030303:intron | 30.0% |
!! | CTTGGTTTTCATATTCATTC+AGG | - | chr6.2:88799058-88799077 | MS.gene030303:intron | 30.0% |
AAATAGAACGTTCAAGTGAG+CGG | - | chr6.2:88799919-88799938 | MS.gene030303:intron | 35.0% | |
AAATAGATTTAGGCCCTGTT+TGG | + | chr6.2:88799648-88799667 | None:intergenic | 35.0% | |
ACACAAGATTTATCGAGGTT+CGG | + | chr6.2:88800063-88800082 | None:intergenic | 35.0% | |
ATAAAACTGGTCAAAGTTGG+TGG | - | chr6.2:88800335-88800354 | MS.gene030303:CDS | 35.0% | |
ATCATGATGTTTGTCCAAAC+AGG | - | chr6.2:88799631-88799650 | MS.gene030303:CDS | 35.0% | |
CAAAAAGACAATTGAAGTGG+GGG | - | chr6.2:88799146-88799165 | MS.gene030303:intron | 35.0% | |
CCAAAAAGACAATTGAAGTG+GGG | - | chr6.2:88799145-88799164 | MS.gene030303:intron | 35.0% | |
CCATGAAAGACTGATAAAAC+TGG | - | chr6.2:88800322-88800341 | MS.gene030303:CDS | 35.0% | |
CCCAAAAAGACAATTGAAGT+GGG | - | chr6.2:88799144-88799163 | MS.gene030303:intron | 35.0% | |
CTCACATAAGTGTTTATGCT+AGG | + | chr6.2:88799509-88799528 | None:intergenic | 35.0% | |
CTGATAAAACTGGTCAAAGT+TGG | - | chr6.2:88800332-88800351 | MS.gene030303:CDS | 35.0% | |
GCGTTGAATCTGTTAAACTA+CGG | + | chr6.2:88798909-88798928 | None:intergenic | 35.0% | |
TATCTGTCATCCAGTTTAAC+CGG | + | chr6.2:88798808-88798827 | None:intergenic | 35.0% | |
TCATAGTTGCTGAACTAAAC+TGG | - | chr6.2:88799999-88800018 | MS.gene030303:intron | 35.0% | |
TCATGATGTTTGTCCAAACA+GGG | - | chr6.2:88799632-88799651 | MS.gene030303:CDS | 35.0% | |
TCCCAAAAAGACAATTGAAG+TGG | - | chr6.2:88799143-88799162 | MS.gene030303:intron | 35.0% | |
TGATGACTCTTGATGAACAA+TGG | - | chr6.2:88798597-88798616 | MS.gene030303:CDS | 35.0% | |
TGTACACACAAGATTTATCG+AGG | + | chr6.2:88800068-88800087 | None:intergenic | 35.0% | |
TTACAGCCATAGATATTGAC+AGG | - | chr6.2:88799317-88799336 | MS.gene030303:intron | 35.0% | |
TTATCCAAAATTGGTAGAGC+TGG | + | chr6.2:88799415-88799434 | None:intergenic | 35.0% | |
TTCTAGTAGATCTTCGGTTA+AGG | - | chr6.2:88799738-88799757 | MS.gene030303:intron | 35.0% | |
TTCTCTGTTGTATTGTAGTC+TGG | + | chr6.2:88798949-88798968 | None:intergenic | 35.0% | |
TTTCATAGCAACTTTACCTG+AGG | - | chr6.2:88799083-88799102 | MS.gene030303:intron | 35.0% | |
! | CCCACTTCAATTGTCTTTTT+GGG | + | chr6.2:88799147-88799166 | None:intergenic | 35.0% |
! | TATGACAACATTTTATGGGG+TGG | - | chr6.2:88800368-88800387 | MS.gene030303:intron | 35.0% |
!! | CCAGTTTTATCAGTCTTTCA+TGG | + | chr6.2:88800325-88800344 | None:intergenic | 35.0% |
AATAGAACGTTCAAGTGAGC+GGG | - | chr6.2:88799920-88799939 | MS.gene030303:intron | 40.0% | |
AGAAACTACCTTCAGTATCG+AGG | + | chr6.2:88799269-88799288 | None:intergenic | 40.0% | |
GATATTGTCCTCGATACTGA+AGG | - | chr6.2:88799258-88799277 | MS.gene030303:intron | 40.0% | |
TATGCAAACCTTTCCATCGT+CGG | + | chr6.2:88799214-88799233 | None:intergenic | 40.0% | |
TGGACTACCTGTCATAAGAA+AGG | - | chr6.2:88799354-88799373 | MS.gene030303:intron | 40.0% | |
TTACCAAGGATGATTCTCAG+TGG | + | chr6.2:88798692-88798711 | None:intergenic | 40.0% | |
TTGATGCAGCCTACAAATGA+AGG | - | chr6.2:88800248-88800267 | MS.gene030303:intron | 40.0% | |
TTGGTTCAATCAGTTCACTC+CGG | - | chr6.2:88798786-88798805 | MS.gene030303:intron | 40.0% | |
! | CCCCACTTCAATTGTCTTTT+TGG | + | chr6.2:88799148-88799167 | None:intergenic | 40.0% |
! | GAATTTGCTCTCACTTCTGT+TGG | - | chr6.2:88800491-88800510 | MS.gene030303:CDS | 40.0% |
! | TTTTATTCTGCGCGCGTTTA+AGG | - | chr6.2:88800108-88800127 | MS.gene030303:intron | 40.0% |
!! | AGCGTTTTGGACAAGTTAGT+CGG | - | chr6.2:88799780-88799799 | MS.gene030303:intron | 40.0% |
!! | CATTTCTAGTAGCGAATCAC+TGG | - | chr6.2:88799682-88799701 | MS.gene030303:intron | 40.0% |
ACTAATCTCGACGAGGATGT+AGG | - | chr6.2:88800024-88800043 | MS.gene030303:intron | 45.0% | |
ACTCCAGCCTTTCTTATGAC+AGG | + | chr6.2:88799364-88799383 | None:intergenic | 45.0% | |
ACTGGTAACTAATCTCGACG+AGG | - | chr6.2:88800017-88800036 | MS.gene030303:intron | 45.0% | |
ACTTGTCCAAAACGCTGAAC+AGG | + | chr6.2:88799776-88799795 | None:intergenic | 45.0% | |
ATAGCAACTTTACCTGAGGC+TGG | - | chr6.2:88799087-88799106 | MS.gene030303:intron | 45.0% | |
ATGCAAACCTTTCCATCGTC+GGG | + | chr6.2:88799213-88799232 | None:intergenic | 45.0% | |
ATGCCACTGAGAATCATCCT+TGG | - | chr6.2:88798686-88798705 | MS.gene030303:CDS | 45.0% | |
CTACCTGTCATAAGAAAGGC+TGG | - | chr6.2:88799358-88799377 | MS.gene030303:intron | 45.0% | |
GAACAAACCAACTGACGAGT+TGG | - | chr6.2:88798966-88798985 | MS.gene030303:intron | 45.0% | |
TCAGTTCACTCCGGTTAAAC+TGG | - | chr6.2:88798795-88798814 | MS.gene030303:intron | 45.0% | |
TGCACTGGAACTTTCTCTTC+AGG | + | chr6.2:88800407-88800426 | None:intergenic | 45.0% | |
TGTCATAAGAAAGGCTGGAG+TGG | - | chr6.2:88799363-88799382 | MS.gene030303:intron | 45.0% | |
! | GGACAAGTTAGTCGGTGTTT+CGG | - | chr6.2:88799788-88799807 | MS.gene030303:CDS | 45.0% |
! | GTCTCCAGCTCTACCAATTT+TGG | - | chr6.2:88799408-88799427 | MS.gene030303:intron | 45.0% |
! | TCAATTGCTGCTAGTCTCTG+TGG | + | chr6.2:88800437-88800456 | None:intergenic | 45.0% |
!! | AAACCAACTGACGAGTTGGT+CGG | - | chr6.2:88798970-88798989 | MS.gene030303:intron | 45.0% |
!! | ATTGAAGTGGGGGTGTTTAC+TGG | - | chr6.2:88799156-88799175 | MS.gene030303:intron | 45.0% |
CAACATTCCCGACGATGGAA+AGG | - | chr6.2:88799203-88799222 | MS.gene030303:intron | 50.0% | |
CGGGAATGTTGAGTGCAGTA+AGG | + | chr6.2:88799194-88799213 | None:intergenic | 50.0% | |
GCAGAGCGAGGACTTAACAA+AGG | - | chr6.2:88798508-88798527 | MS.gene030303:CDS | 50.0% | |
GCATTCCTCAGCTCTTTGAG+AGG | + | chr6.2:88798670-88798689 | None:intergenic | 50.0% | |
TCCTCGCTCTGCAATATGAC+AGG | + | chr6.2:88798500-88798519 | None:intergenic | 50.0% | |
TCCTGTCATATTGCAGAGCG+AGG | - | chr6.2:88798496-88798515 | MS.gene030303:CDS | 50.0% | |
! | CTCTGTGGTCTAGAATGCAC+TGG | + | chr6.2:88800422-88800441 | None:intergenic | 50.0% |
! | GCTCTCACTTCTGTTGGTGA+TGG | - | chr6.2:88800497-88800516 | MS.gene030303:CDS | 50.0% |
! | GTGATTAGTTGACCAGCCTC+AGG | + | chr6.2:88799102-88799121 | None:intergenic | 50.0% |
! | GTTAGGCCTGTTCAGCGTTT+TGG | - | chr6.2:88799767-88799786 | MS.gene030303:intron | 50.0% |
! | TGGTCGGTTCTCTGTTCAAC+TGG | - | chr6.2:88798986-88799005 | MS.gene030303:intron | 50.0% |
CTGAGCCTCTCAAAGAGCTG+AGG | - | chr6.2:88798662-88798681 | MS.gene030303:CDS | 55.0% | |
GAACCGACCAACTCGTCAGT+TGG | + | chr6.2:88798976-88798995 | None:intergenic | 55.0% | |
GCACTCAACATTCCCGACGA+TGG | - | chr6.2:88799198-88799217 | MS.gene030303:intron | 55.0% | |
TATGGGGTGGACGTGTTGCA+TGG | - | chr6.2:88800381-88800400 | MS.gene030303:intron | 55.0% | |
TGAGAGGCTCAGGCTCTCTA+GGG | + | chr6.2:88798654-88798673 | None:intergenic | 55.0% | |
TTGAGAGGCTCAGGCTCTCT+AGG | + | chr6.2:88798655-88798674 | None:intergenic | 55.0% | |
! | CTCAGCTCTTTGAGAGGCTC+AGG | + | chr6.2:88798664-88798683 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.2 | gene | 88798461 | 88800547 | 88798461 | ID=MS.gene030303 |
chr6.2 | mRNA | 88798461 | 88800547 | 88798461 | ID=MS.gene030303.t1;Parent=MS.gene030303 |
chr6.2 | exon | 88800479 | 88800547 | 88800479 | ID=MS.gene030303.t1.exon1;Parent=MS.gene030303.t1 |
chr6.2 | CDS | 88800479 | 88800547 | 88800479 | ID=cds.MS.gene030303.t1;Parent=MS.gene030303.t1 |
chr6.2 | exon | 88800301 | 88800380 | 88800301 | ID=MS.gene030303.t1.exon2;Parent=MS.gene030303.t1 |
chr6.2 | CDS | 88800301 | 88800380 | 88800301 | ID=cds.MS.gene030303.t1;Parent=MS.gene030303.t1 |
chr6.2 | exon | 88799784 | 88799928 | 88799784 | ID=MS.gene030303.t1.exon3;Parent=MS.gene030303.t1 |
chr6.2 | CDS | 88799784 | 88799928 | 88799784 | ID=cds.MS.gene030303.t1;Parent=MS.gene030303.t1 |
chr6.2 | exon | 88799561 | 88799692 | 88799561 | ID=MS.gene030303.t1.exon4;Parent=MS.gene030303.t1 |
chr6.2 | CDS | 88799561 | 88799692 | 88799561 | ID=cds.MS.gene030303.t1;Parent=MS.gene030303.t1 |
chr6.2 | exon | 88798461 | 88798751 | 88798461 | ID=MS.gene030303.t1.exon5;Parent=MS.gene030303.t1 |
chr6.2 | CDS | 88798461 | 88798751 | 88798461 | ID=cds.MS.gene030303.t1;Parent=MS.gene030303.t1 |
Gene Sequence |
Protein sequence |