Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053539.t1 | Q40313.1 | 95.5 | 242 | 10 | 1 | 1 | 242 | 1 | 241 | 1.30E-127 | 465.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053539.t1 | Q40313 | 95.5 | 242 | 10 | 1 | 1 | 242 | 1 | 241 | 3.2e-130 | 465.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053539.t1 | G7JK14 | 95.0 | 242 | 11 | 1 | 1 | 242 | 1 | 241 | 3.7e-127 | 463.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053535 | MS.gene053539 | 0.984135 | 1.10E-159 | -1.69E-46 |
| MS.gene053537 | MS.gene053539 | 0.923225 | 3.52E-89 | -1.69E-46 |
| MS.gene053539 | MS.gene059423 | 0.974959 | 4.39E-139 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene20157 | MS.gene053539 | PPI |
| MS.gene028389 | MS.gene053539 | PPI |
| MS.gene074442 | MS.gene053539 | PPI |
| MS.gene75055 | MS.gene053539 | PPI |
| MS.gene35069 | MS.gene053539 | PPI |
| MS.gene051092 | MS.gene053539 | PPI |
| MS.gene66349 | MS.gene053539 | PPI |
| MS.gene28756 | MS.gene053539 | PPI |
| MS.gene053539 | MS.gene049025 | PPI |
| MS.gene064029 | MS.gene053539 | PPI |
| MS.gene55886 | MS.gene053539 | PPI |
| MS.gene030303 | MS.gene053539 | PPI |
| MS.gene25100 | MS.gene053539 | PPI |
| MS.gene06173 | MS.gene053539 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053539.t1 | MTR_4g085590 | 95.041 | 242 | 11 | 1 | 1 | 242 | 1 | 241 | 2.97e-172 | 474 |
| MS.gene053539.t1 | MTR_4g094815 | 65.690 | 239 | 81 | 1 | 4 | 242 | 5 | 242 | 9.22e-118 | 337 |
| MS.gene053539.t1 | MTR_4g094925 | 60.744 | 242 | 90 | 2 | 1 | 242 | 1 | 237 | 9.33e-110 | 316 |
| MS.gene053539.t1 | MTR_4g094898 | 63.750 | 240 | 86 | 1 | 3 | 242 | 4 | 242 | 2.50e-108 | 313 |
| MS.gene053539.t1 | MTR_4g094812 | 64.463 | 242 | 84 | 2 | 1 | 242 | 1 | 240 | 3.43e-106 | 307 |
| MS.gene053539.t1 | MTR_4g094925 | 63.388 | 183 | 66 | 1 | 60 | 242 | 25 | 206 | 1.84e-86 | 256 |
| MS.gene053539.t1 | MTR_8g021225 | 53.812 | 223 | 102 | 1 | 20 | 242 | 8 | 229 | 1.23e-82 | 247 |
| MS.gene053539.t1 | MTR_4g094898 | 65.385 | 182 | 62 | 1 | 61 | 242 | 1 | 181 | 1.76e-81 | 242 |
| MS.gene053539.t1 | MTR_8g101900 | 55.455 | 220 | 96 | 2 | 23 | 242 | 12 | 229 | 5.66e-78 | 235 |
| MS.gene053539.t1 | MTR_6g091680 | 54.545 | 209 | 94 | 1 | 23 | 231 | 15 | 222 | 2.59e-75 | 228 |
| MS.gene053539.t1 | MTR_4g094368 | 51.415 | 212 | 100 | 2 | 21 | 230 | 3 | 213 | 6.12e-71 | 217 |
| MS.gene053539.t1 | MTR_2g070410 | 40.116 | 172 | 99 | 2 | 29 | 200 | 91 | 258 | 4.74e-37 | 131 |
| MS.gene053539.t1 | MTR_2g070410 | 40.116 | 172 | 99 | 2 | 29 | 200 | 91 | 258 | 6.24e-37 | 132 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053539.t1 | AT4G34050 | 84.874 | 238 | 35 | 1 | 5 | 242 | 44 | 280 | 2.18e-155 | 433 |
| MS.gene053539.t1 | AT4G34050 | 84.874 | 238 | 35 | 1 | 5 | 242 | 17 | 253 | 2.50e-155 | 432 |
| MS.gene053539.t1 | AT4G26220 | 58.571 | 210 | 86 | 1 | 21 | 230 | 7 | 215 | 6.12e-88 | 260 |
| MS.gene053539.t1 | AT1G67980 | 55.093 | 216 | 91 | 3 | 17 | 230 | 4 | 215 | 2.90e-80 | 241 |
| MS.gene053539.t1 | AT1G67990 | 53.302 | 212 | 94 | 3 | 21 | 230 | 8 | 216 | 5.74e-74 | 225 |
| MS.gene053539.t1 | AT1G24735 | 53.555 | 211 | 94 | 3 | 22 | 230 | 15 | 223 | 1.77e-70 | 216 |
| MS.gene053539.t1 | AT4G34050 | 82.456 | 114 | 19 | 1 | 129 | 242 | 30 | 142 | 4.52e-67 | 204 |
| MS.gene053539.t1 | AT1G24735 | 54.706 | 170 | 75 | 2 | 61 | 230 | 11 | 178 | 4.79e-57 | 181 |
| MS.gene053539.t1 | AT1G24735 | 54.706 | 170 | 75 | 2 | 61 | 230 | 107 | 274 | 7.93e-56 | 181 |
| MS.gene053539.t1 | AT3G62000 | 40.984 | 183 | 103 | 3 | 19 | 200 | 60 | 238 | 4.68e-40 | 139 |
| MS.gene053539.t1 | AT3G62000 | 40.984 | 183 | 103 | 3 | 19 | 200 | 60 | 238 | 3.66e-39 | 139 |
| MS.gene053539.t1 | AT3G61990 | 44.379 | 169 | 87 | 3 | 29 | 197 | 86 | 247 | 4.88e-38 | 134 |
| MS.gene053539.t1 | AT1G67980 | 44.000 | 150 | 80 | 2 | 81 | 230 | 2 | 147 | 1.17e-37 | 130 |
Find 57 sgRNAs with CRISPR-Local
Find 86 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTAGCATTGATAAGTTTA+AGG | 0.154244 | 4.3:-27236617 | None:intergenic |
| CAAGATCGATTAACCTCTTA+TGG | 0.268687 | 4.3:-27237241 | None:intergenic |
| ATAAATACCTTTCCATCTTC+AGG | 0.276991 | 4.3:-27236699 | None:intergenic |
| GCTAAGAATACCATGGAAAT+TGG | 0.278001 | 4.3:+27236633 | MS.gene053539:CDS |
| AAGCATACATATTTCAATCT+AGG | 0.300985 | 4.3:-27237404 | None:intergenic |
| TAACAAAGAAAATTACGAAT+TGG | 0.303369 | 4.3:+27236966 | MS.gene053539:CDS |
| GATCAAAAGCAAACTGAATC+TGG | 0.306656 | 4.3:+27236185 | MS.gene053539:CDS |
| TTCATAGCTTCATGTTCTCT+TGG | 0.316977 | 4.3:-27236373 | None:intergenic |
| TCGGCTACGACAACACCTTA+TGG | 0.326245 | 4.3:+27237282 | MS.gene053539:CDS |
| TACTTCCTCAATGGAGCATC+AGG | 0.355841 | 4.3:-27237326 | None:intergenic |
| TTTGGAGCTTAACAAGGCTT+TGG | 0.370464 | 4.3:+27237373 | MS.gene053539:CDS |
| GTTAATCGATCTTGTTAAAG+TGG | 0.393377 | 4.3:+27237250 | MS.gene053539:CDS |
| AACAAAGAAAATTACGAATT+GGG | 0.394736 | 4.3:+27236967 | MS.gene053539:CDS |
| TCATAGCTTCATGTTCTCTT+GGG | 0.406275 | 4.3:-27236372 | None:intergenic |
| CTCCATTGAGGAAGTATGTT+AGG | 0.425117 | 4.3:+27237333 | MS.gene053539:CDS |
| TTGATCATTTCATCAAGAAC+TGG | 0.432518 | 4.3:-27237054 | None:intergenic |
| GCCCTAGCTATTCCTGAAGA+TGG | 0.453375 | 4.3:+27236687 | MS.gene053539:CDS |
| ATTACCTCAACTACCATAAG+AGG | 0.454646 | 4.3:+27237228 | MS.gene053539:CDS |
| CACAAAATTGATTTCAGAGA+AGG | 0.464239 | 4.3:+27237021 | MS.gene053539:CDS |
| GCTTAACAAGGCTTTGGCTG+TGG | 0.469408 | 4.3:+27237379 | MS.gene053539:CDS |
| AGCATACATATTTCAATCTA+GGG | 0.490165 | 4.3:-27237403 | None:intergenic |
| AGCTAGGGCAGTGGCAAGGA+GGG | 0.490733 | 4.3:-27236673 | None:intergenic |
| TCATCAAGAACTGGAAGAGC+TGG | 0.494231 | 4.3:-27237045 | None:intergenic |
| TACCTAACATACTTCCTCAA+TGG | 0.510094 | 4.3:-27237335 | None:intergenic |
| TTCCATCTTCAGGAATAGCT+AGG | 0.514348 | 4.3:-27236689 | None:intergenic |
| ACAAAGTGATGCCCTTTACC+AGG | 0.515306 | 4.3:+27236241 | MS.gene053539:CDS |
| TCTGGAAGACATCAAGAAGT+TGG | 0.517673 | 4.3:+27236203 | MS.gene053539:CDS |
| ATAGTGATTCCATCACCAAC+AGG | 0.521355 | 4.3:-27237427 | None:intergenic |
| AAATTGTGTGTACCTGGTAA+AGG | 0.529467 | 4.3:-27236253 | None:intergenic |
| ATGACAACCTCTGCAGATGA+AGG | 0.539968 | 4.3:+27236576 | MS.gene053539:CDS |
| AATTGTGTGTACCTGGTAAA+GGG | 0.545677 | 4.3:-27236252 | None:intergenic |
| ATGTTCTCTTGGGAAGACAC+TGG | 0.546160 | 4.3:-27236362 | None:intergenic |
| GTTAAAGTGGGAGGTGTGAT+CGG | 0.548322 | 4.3:+27237263 | MS.gene053539:CDS |
| AACCACAGATCCATTCCATA+AGG | 0.552846 | 4.3:-27237297 | None:intergenic |
| TTAACCTCTTATGGTAGTTG+AGG | 0.561488 | 4.3:-27237232 | None:intergenic |
| TACGACAACACCTTATGGAA+TGG | 0.561597 | 4.3:+27237287 | MS.gene053539:CDS |
| AGCTATTCCTGAAGATGGAA+AGG | 0.565418 | 4.3:+27236692 | MS.gene053539:CDS |
| ATCGATCTTGTTAAAGTGGG+AGG | 0.565493 | 4.3:+27237254 | MS.gene053539:CDS |
| ATGGAAATTGGTGTCTACAC+TGG | 0.567113 | 4.3:+27236645 | MS.gene053539:CDS |
| AAATCAATTACTTGATCCTA+CGG | 0.569584 | 4.3:-27237453 | None:intergenic |
| TCCATCTTCAGGAATAGCTA+GGG | 0.570121 | 4.3:-27236688 | None:intergenic |
| TTAATCGATCTTGTTAAAGT+GGG | 0.572330 | 4.3:+27237251 | MS.gene053539:CDS |
| GAAATATGTATGCTTCCTGT+TGG | 0.574969 | 4.3:+27237412 | MS.gene053539:CDS |
| ACTTCCTCAATGGAGCATCA+GGG | 0.579332 | 4.3:-27237325 | None:intergenic |
| TGTATGCTTCCTGTTGGTGA+TGG | 0.580796 | 4.3:+27237418 | MS.gene053539:CDS |
| TAGCTAGGGCAGTGGCAAGG+AGG | 0.584857 | 4.3:-27236674 | None:intergenic |
| CTTCCTCAATGGAGCATCAG+GGG | 0.588342 | 4.3:-27237324 | None:intergenic |
| TTCAGGAATAGCTAGGGCAG+TGG | 0.598779 | 4.3:-27236682 | None:intergenic |
| AAATTGTCCTTCATCTGCAG+AGG | 0.606260 | 4.3:-27236583 | None:intergenic |
| AGTGTAGACACCAATTTCCA+TGG | 0.614822 | 4.3:-27236643 | None:intergenic |
| TATCAATGCTAAGAATACCA+TGG | 0.621099 | 4.3:+27236626 | MS.gene053539:CDS |
| CACCTTATGGAATGGATCTG+TGG | 0.632572 | 4.3:+27237295 | MS.gene053539:CDS |
| ATGGAATCACTATCTGCCGT+AGG | 0.633911 | 4.3:+27237437 | MS.gene053539:CDS |
| GAATAGCTAGGGCAGTGGCA+AGG | 0.635775 | 4.3:-27236677 | None:intergenic |
| TTCCTCAATGGAGCATCAGG+GGG | 0.651997 | 4.3:-27237323 | None:intergenic |
| AGGTCACAGCAAAACACCCA+TGG | 0.652192 | 4.3:+27236407 | MS.gene053539:CDS |
| AGCTATGAAAGAGTTGAGAG+AGG | 0.657735 | 4.3:+27236387 | MS.gene053539:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATCTAATTGATTATATAA+TGG | - | chr4.3:27236764-27236783 | None:intergenic | 10.0% |
| !! | TGCTAAAAAATTTAAATTAT+GGG | - | chr4.3:27236288-27236307 | None:intergenic | 10.0% |
| !! | TTGCTAAAAAATTTAAATTA+TGG | - | chr4.3:27236289-27236308 | None:intergenic | 10.0% |
| !!! | TGATTTTTTGTTAATTTTTT+AGG | + | chr4.3:27237154-27237173 | MS.gene053539:intron | 10.0% |
| !! | AACAAAGAAAATTACGAATT+GGG | + | chr4.3:27236967-27236986 | MS.gene053539:CDS | 20.0% |
| !! | TAACAAAGAAAATTACGAAT+TGG | + | chr4.3:27236966-27236985 | MS.gene053539:CDS | 20.0% |
| !!! | ATGAAAAAAGTTCTAACAAA+AGG | - | chr4.3:27236816-27236835 | None:intergenic | 20.0% |
| !!! | ATTTTTTAGCAAGAACTTTT+CGG | + | chr4.3:27236297-27236316 | MS.gene053539:intron | 20.0% |
| !!! | ATTTTTTAGGAAAAGAATCA+TGG | + | chr4.3:27237167-27237186 | MS.gene053539:intron | 20.0% |
| !!! | TTTTTCTTCATAGAAAAAGA+TGG | - | chr4.3:27237094-27237113 | None:intergenic | 20.0% |
| ! | AAGCATACATATTTCAATCT+AGG | - | chr4.3:27237407-27237426 | None:intergenic | 25.0% |
| ! | AGCATACATATTTCAATCTA+GGG | - | chr4.3:27237406-27237425 | None:intergenic | 25.0% |
| ! | ATTGAACAAAACAACAAAAC+AGG | + | chr4.3:27236547-27236566 | MS.gene053539:intron | 25.0% |
| ! | GAATTACGAATTATTACCAT+GGG | - | chr4.3:27236426-27236445 | None:intergenic | 25.0% |
| ! | GAGATATCATGTAAAATCAA+GGG | + | chr4.3:27236890-27236909 | MS.gene053539:intron | 25.0% |
| ! | TCCAATTGATATAAGTTCAA+TGG | - | chr4.3:27236497-27236516 | None:intergenic | 25.0% |
| ! | TCCATTGAACTTATATCAAT+TGG | + | chr4.3:27236493-27236512 | MS.gene053539:intron | 25.0% |
| ! | TGAATTACGAATTATTACCA+TGG | - | chr4.3:27236427-27236446 | None:intergenic | 25.0% |
| ! | TGAGATATCATGTAAAATCA+AGG | + | chr4.3:27236889-27236908 | MS.gene053539:intron | 25.0% |
| ! | TTAATCGATCTTGTTAAAGT+GGG | + | chr4.3:27237251-27237270 | MS.gene053539:CDS | 25.0% |
| ! | TTCAATGGAACCTAATAATA+AGG | - | chr4.3:27236482-27236501 | None:intergenic | 25.0% |
| !! | CTTTTGTGTTTAGTAAAGTA+AGG | + | chr4.3:27236837-27236856 | MS.gene053539:intron | 25.0% |
| !! | GGTCTAATACTTAATTTTTC+TGG | + | chr4.3:27236911-27236930 | MS.gene053539:intron | 25.0% |
| !! | GTTGTAATTGTTACAGATTT+TGG | + | chr4.3:27236933-27236952 | MS.gene053539:intron | 25.0% |
| !!! | GTACTATAGAGATTTTGTTT+TGG | + | chr4.3:27237355-27237374 | MS.gene053539:CDS | 25.0% |
| !!! | TCTTAGCATTGATAAGTTTA+AGG | - | chr4.3:27236620-27236639 | None:intergenic | 25.0% |
| AAAATGAAATTGTGTGTACC+TGG | - | chr4.3:27236262-27236281 | None:intergenic | 30.0% | |
| ACTCGATCTACCTTATTATT+AGG | + | chr4.3:27236469-27236488 | MS.gene053539:intron | 30.0% | |
| ATAAATACCTTTCCATCTTC+AGG | - | chr4.3:27236702-27236721 | None:intergenic | 30.0% | |
| CTACCTGTAATTAAAAAAGC+TGG | + | chr4.3:27236991-27237010 | MS.gene053539:CDS | 30.0% | |
| GTGTTTAGTAAAGTAAGGTT+AGG | + | chr4.3:27236842-27236861 | MS.gene053539:intron | 30.0% | |
| GTTAATCGATCTTGTTAAAG+TGG | + | chr4.3:27237250-27237269 | MS.gene053539:CDS | 30.0% | |
| TATCAATGCTAAGAATACCA+TGG | + | chr4.3:27236626-27236645 | MS.gene053539:CDS | 30.0% | |
| TTGATCATTTCATCAAGAAC+TGG | - | chr4.3:27237057-27237076 | None:intergenic | 30.0% | |
| ! | CACAAAATTGATTTCAGAGA+AGG | + | chr4.3:27237021-27237040 | MS.gene053539:CDS | 30.0% |
| !! | TAGCTACGATTTCATTTTTG+TGG | + | chr4.3:27237190-27237209 | MS.gene053539:CDS | 30.0% |
| !!! | ACACCAGCTTTTTTAATTAC+AGG | - | chr4.3:27236997-27237016 | None:intergenic | 30.0% |
| !!! | ATTGTTACAGATTTTGGCTA+TGG | + | chr4.3:27236939-27236958 | MS.gene053539:intron | 30.0% |
| !!! | TTTTGTTTTGGAGCTTAACA+AGG | + | chr4.3:27237367-27237386 | MS.gene053539:CDS | 30.0% |
| AAATTGTGTGTACCTGGTAA+AGG | - | chr4.3:27236256-27236275 | None:intergenic | 35.0% | |
| AATTGTGTGTACCTGGTAAA+GGG | - | chr4.3:27236255-27236274 | None:intergenic | 35.0% | |
| ATTACCTCAACTACCATAAG+AGG | + | chr4.3:27237228-27237247 | MS.gene053539:CDS | 35.0% | |
| CAAGATCGATTAACCTCTTA+TGG | - | chr4.3:27237244-27237263 | None:intergenic | 35.0% | |
| GAAATATGTATGCTTCCTGT+TGG | + | chr4.3:27237412-27237431 | MS.gene053539:CDS | 35.0% | |
| GATCAAAAGCAAACTGAATC+TGG | + | chr4.3:27236185-27236204 | MS.gene053539:CDS | 35.0% | |
| GCTAAGAATACCATGGAAAT+TGG | + | chr4.3:27236633-27236652 | MS.gene053539:CDS | 35.0% | |
| TACCTAACATACTTCCTCAA+TGG | - | chr4.3:27237338-27237357 | None:intergenic | 35.0% | |
| TCATAGCTTCATGTTCTCTT+GGG | - | chr4.3:27236375-27236394 | None:intergenic | 35.0% | |
| TTAACCTCTTATGGTAGTTG+AGG | - | chr4.3:27237235-27237254 | None:intergenic | 35.0% | |
| TTCATAGCTTCATGTTCTCT+TGG | - | chr4.3:27236376-27236395 | None:intergenic | 35.0% | |
| !! | AGTTTGCTTTTGATCTTCGT+TGG | - | chr4.3:27236180-27236199 | None:intergenic | 35.0% |
| AAATTGTCCTTCATCTGCAG+AGG | - | chr4.3:27236586-27236605 | None:intergenic | 40.0% | |
| AACCACAGATCCATTCCATA+AGG | - | chr4.3:27237300-27237319 | None:intergenic | 40.0% | |
| AGCTATGAAAGAGTTGAGAG+AGG | + | chr4.3:27236387-27236406 | MS.gene053539:CDS | 40.0% | |
| AGCTATTCCTGAAGATGGAA+AGG | + | chr4.3:27236692-27236711 | MS.gene053539:CDS | 40.0% | |
| AGTGTAGACACCAATTTCCA+TGG | - | chr4.3:27236646-27236665 | None:intergenic | 40.0% | |
| ATAGTGATTCCATCACCAAC+AGG | - | chr4.3:27237430-27237449 | None:intergenic | 40.0% | |
| ATCGATCTTGTTAAAGTGGG+AGG | + | chr4.3:27237254-27237273 | MS.gene053539:CDS | 40.0% | |
| TACGACAACACCTTATGGAA+TGG | + | chr4.3:27237287-27237306 | MS.gene053539:CDS | 40.0% | |
| TCCATCTTCAGGAATAGCTA+GGG | - | chr4.3:27236691-27236710 | None:intergenic | 40.0% | |
| TCTGGAAGACATCAAGAAGT+TGG | + | chr4.3:27236203-27236222 | MS.gene053539:CDS | 40.0% | |
| TTCCATCTTCAGGAATAGCT+AGG | - | chr4.3:27236692-27236711 | None:intergenic | 40.0% | |
| ! | ATGGAAATTGGTGTCTACAC+TGG | + | chr4.3:27236645-27236664 | MS.gene053539:CDS | 40.0% |
| ! | CTCCATTGAGGAAGTATGTT+AGG | + | chr4.3:27237333-27237352 | MS.gene053539:CDS | 40.0% |
| ! | TTTGGAGCTTAACAAGGCTT+TGG | + | chr4.3:27237373-27237392 | MS.gene053539:CDS | 40.0% |
| ACAAAGTGATGCCCTTTACC+AGG | + | chr4.3:27236241-27236260 | MS.gene053539:CDS | 45.0% | |
| ATGACAACCTCTGCAGATGA+AGG | + | chr4.3:27236576-27236595 | MS.gene053539:CDS | 45.0% | |
| ATGGAATCACTATCTGCCGT+AGG | + | chr4.3:27237437-27237456 | MS.gene053539:CDS | 45.0% | |
| ATGTTCTCTTGGGAAGACAC+TGG | - | chr4.3:27236365-27236384 | None:intergenic | 45.0% | |
| CACCTTATGGAATGGATCTG+TGG | + | chr4.3:27237295-27237314 | MS.gene053539:CDS | 45.0% | |
| TCATCAAGAACTGGAAGAGC+TGG | - | chr4.3:27237048-27237067 | None:intergenic | 45.0% | |
| ! | ACTTCCTCAATGGAGCATCA+GGG | - | chr4.3:27237328-27237347 | None:intergenic | 45.0% |
| ! | GTTAAAGTGGGAGGTGTGAT+CGG | + | chr4.3:27237263-27237282 | MS.gene053539:CDS | 45.0% |
| ! | TACTTCCTCAATGGAGCATC+AGG | - | chr4.3:27237329-27237348 | None:intergenic | 45.0% |
| ! | TGTATGCTTCCTGTTGGTGA+TGG | + | chr4.3:27237418-27237437 | MS.gene053539:CDS | 45.0% |
| AGGTCACAGCAAAACACCCA+TGG | + | chr4.3:27236407-27236426 | MS.gene053539:CDS | 50.0% | |
| GCCCTAGCTATTCCTGAAGA+TGG | + | chr4.3:27236687-27236706 | MS.gene053539:CDS | 50.0% | |
| TCGGCTACGACAACACCTTA+TGG | + | chr4.3:27237282-27237301 | MS.gene053539:CDS | 50.0% | |
| TTCAGGAATAGCTAGGGCAG+TGG | - | chr4.3:27236685-27236704 | None:intergenic | 50.0% | |
| ! | CTTCCTCAATGGAGCATCAG+GGG | - | chr4.3:27237327-27237346 | None:intergenic | 50.0% |
| ! | GCTTAACAAGGCTTTGGCTG+TGG | + | chr4.3:27237379-27237398 | MS.gene053539:CDS | 50.0% |
| ! | TTCCTCAATGGAGCATCAGG+GGG | - | chr4.3:27237326-27237345 | None:intergenic | 50.0% |
| GAATAGCTAGGGCAGTGGCA+AGG | - | chr4.3:27236680-27236699 | None:intergenic | 55.0% | |
| AGCTAGGGCAGTGGCAAGGA+GGG | - | chr4.3:27236676-27236695 | None:intergenic | 60.0% | |
| CACCCCCTGATGCTCCATTG+AGG | + | chr4.3:27237321-27237340 | MS.gene053539:CDS | 60.0% | |
| TAGCTAGGGCAGTGGCAAGG+AGG | - | chr4.3:27236677-27236696 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 27236170 | 27237472 | 27236170 | ID=MS.gene053539 |
| chr4.3 | mRNA | 27236170 | 27237472 | 27236170 | ID=MS.gene053539.t1;Parent=MS.gene053539 |
| chr4.3 | exon | 27236170 | 27236262 | 27236170 | ID=MS.gene053539.t1.exon1;Parent=MS.gene053539.t1 |
| chr4.3 | CDS | 27236170 | 27236262 | 27236170 | ID=cds.MS.gene053539.t1;Parent=MS.gene053539.t1 |
| chr4.3 | exon | 27236349 | 27236428 | 27236349 | ID=MS.gene053539.t1.exon2;Parent=MS.gene053539.t1 |
| chr4.3 | CDS | 27236349 | 27236428 | 27236349 | ID=cds.MS.gene053539.t1;Parent=MS.gene053539.t1 |
| chr4.3 | exon | 27236569 | 27236713 | 27236569 | ID=MS.gene053539.t1.exon3;Parent=MS.gene053539.t1 |
| chr4.3 | CDS | 27236569 | 27236713 | 27236569 | ID=cds.MS.gene053539.t1;Parent=MS.gene053539.t1 |
| chr4.3 | exon | 27236949 | 27237080 | 27236949 | ID=MS.gene053539.t1.exon4;Parent=MS.gene053539.t1 |
| chr4.3 | CDS | 27236949 | 27237080 | 27236949 | ID=cds.MS.gene053539.t1;Parent=MS.gene053539.t1 |
| chr4.3 | exon | 27237176 | 27237472 | 27237176 | ID=MS.gene053539.t1.exon5;Parent=MS.gene053539.t1 |
| chr4.3 | CDS | 27237176 | 27237472 | 27237176 | ID=cds.MS.gene053539.t1;Parent=MS.gene053539.t1 |
| Gene Sequence |
| Protein sequence |
