Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059423.t1 | Q40313.1 | 100 | 247 | 0 | 0 | 1 | 247 | 1 | 247 | 1.30E-138 | 502.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059423.t1 | Q40313 | 100.0 | 247 | 0 | 0 | 1 | 247 | 1 | 247 | 3.1e-141 | 502.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059423.t1 | G7JK14 | 99.6 | 247 | 1 | 0 | 1 | 247 | 1 | 247 | 3.5e-138 | 500.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053535 | MS.gene059423 | 0.995604 | 5.83E-218 | -1.69E-46 |
| MS.gene053537 | MS.gene059423 | 0.967116 | 7.78E-127 | -1.69E-46 |
| MS.gene053539 | MS.gene059423 | 0.974959 | 4.39E-139 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene059423 | MS.gene049025 | PPI |
| MS.gene059423 | MS.gene28756 | PPI |
| MS.gene059423 | MS.gene75055 | PPI |
| MS.gene66349 | MS.gene059423 | PPI |
| MS.gene030303 | MS.gene059423 | PPI |
| MS.gene059423 | MS.gene074442 | PPI |
| MS.gene064029 | MS.gene059423 | PPI |
| MS.gene55886 | MS.gene059423 | PPI |
| MS.gene059423 | MS.gene35069 | PPI |
| MS.gene059423 | MS.gene20157 | PPI |
| MS.gene059423 | MS.gene051092 | PPI |
| MS.gene059423 | MS.gene25100 | PPI |
| MS.gene028389 | MS.gene059423 | PPI |
| MS.gene059423 | MS.gene06173 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059423.t1 | MTR_4g085590 | 99.595 | 247 | 1 | 0 | 1 | 247 | 1 | 247 | 0.0 | 509 |
| MS.gene059423.t1 | MTR_4g094815 | 68.980 | 245 | 76 | 0 | 3 | 247 | 4 | 248 | 1.98e-130 | 369 |
| MS.gene059423.t1 | MTR_4g094925 | 64.228 | 246 | 84 | 1 | 1 | 246 | 1 | 242 | 7.95e-121 | 344 |
| MS.gene059423.t1 | MTR_4g094898 | 67.347 | 245 | 80 | 0 | 3 | 247 | 4 | 248 | 1.97e-119 | 341 |
| MS.gene059423.t1 | MTR_4g094812 | 68.293 | 246 | 77 | 1 | 1 | 246 | 1 | 245 | 6.03e-118 | 337 |
| MS.gene059423.t1 | MTR_4g094925 | 67.914 | 187 | 60 | 0 | 60 | 246 | 25 | 211 | 8.71e-98 | 285 |
| MS.gene059423.t1 | MTR_8g021225 | 57.965 | 226 | 95 | 0 | 20 | 245 | 8 | 233 | 3.06e-93 | 274 |
| MS.gene059423.t1 | MTR_4g094898 | 70.053 | 187 | 56 | 0 | 61 | 247 | 1 | 187 | 1.37e-92 | 270 |
| MS.gene059423.t1 | MTR_8g101900 | 58.036 | 224 | 93 | 1 | 23 | 246 | 12 | 234 | 4.75e-87 | 258 |
| MS.gene059423.t1 | MTR_6g091680 | 55.357 | 224 | 99 | 1 | 23 | 246 | 15 | 237 | 6.39e-84 | 250 |
| MS.gene059423.t1 | MTR_4g094368 | 52.212 | 226 | 105 | 2 | 21 | 244 | 3 | 227 | 1.92e-79 | 239 |
| MS.gene059423.t1 | MTR_2g070410 | 38.991 | 218 | 121 | 4 | 29 | 245 | 91 | 297 | 5.09e-46 | 155 |
| MS.gene059423.t1 | MTR_2g070410 | 40.116 | 172 | 99 | 2 | 29 | 200 | 91 | 258 | 7.05e-37 | 131 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059423.t1 | AT4G34050 | 89.669 | 242 | 25 | 0 | 5 | 246 | 44 | 285 | 1.62e-168 | 466 |
| MS.gene059423.t1 | AT4G34050 | 89.669 | 242 | 25 | 0 | 5 | 246 | 17 | 258 | 1.75e-168 | 465 |
| MS.gene059423.t1 | AT4G26220 | 58.850 | 226 | 92 | 1 | 21 | 246 | 7 | 231 | 3.83e-97 | 284 |
| MS.gene059423.t1 | AT1G67980 | 54.936 | 233 | 99 | 3 | 16 | 246 | 3 | 231 | 5.27e-90 | 266 |
| MS.gene059423.t1 | AT1G67990 | 53.509 | 228 | 101 | 3 | 21 | 246 | 8 | 232 | 6.99e-84 | 250 |
| MS.gene059423.t1 | AT1G24735 | 53.540 | 226 | 101 | 3 | 23 | 246 | 16 | 239 | 4.00e-80 | 241 |
| MS.gene059423.t1 | AT4G34050 | 88.618 | 123 | 14 | 0 | 124 | 246 | 25 | 147 | 4.29e-80 | 237 |
| MS.gene059423.t1 | AT1G24735 | 54.301 | 186 | 83 | 2 | 61 | 246 | 11 | 194 | 3.22e-66 | 204 |
| MS.gene059423.t1 | AT1G24735 | 54.301 | 186 | 83 | 2 | 61 | 246 | 107 | 290 | 3.61e-65 | 204 |
| MS.gene059423.t1 | AT3G62000 | 40.351 | 228 | 125 | 5 | 19 | 245 | 60 | 277 | 4.55e-49 | 163 |
| MS.gene059423.t1 | AT1G67980 | 45.181 | 166 | 87 | 2 | 81 | 246 | 2 | 163 | 1.31e-47 | 155 |
| MS.gene059423.t1 | AT3G61990 | 42.396 | 217 | 112 | 5 | 29 | 245 | 86 | 289 | 1.32e-46 | 157 |
| MS.gene059423.t1 | AT3G62000 | 38.710 | 217 | 122 | 5 | 19 | 234 | 60 | 266 | 1.11e-39 | 140 |
Find 58 sgRNAs with CRISPR-Local
Find 87 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTAGCATTGATAAGTTTA+AGG | 0.154244 | 4.3:-27184868 | None:intergenic |
| CAAGATCGATTAACCTCTTA+TGG | 0.268687 | 4.3:-27185494 | None:intergenic |
| ATAAATACCTTTCCATCTTC+AGG | 0.276991 | 4.3:-27184950 | None:intergenic |
| GCTAAGAATACCATGGAAAT+TGG | 0.278001 | 4.3:+27184884 | MS.gene059423:CDS |
| TAACAAAGAAAATTACGAAT+TGG | 0.303369 | 4.3:+27185218 | MS.gene059423:CDS |
| GATCAAAAGCAAACTGAATC+TGG | 0.306656 | 4.3:+27184435 | MS.gene059423:CDS |
| TTCATAGCTTCATGTTCTCT+TGG | 0.316977 | 4.3:-27184623 | None:intergenic |
| TCGGCTACGACAACACCTTA+TGG | 0.326245 | 4.3:+27185535 | MS.gene059423:CDS |
| TACTTCCTCAATGGAGCATC+AGG | 0.355841 | 4.3:-27185579 | None:intergenic |
| TTTGGAGCTTAACAAGGCTT+TGG | 0.370464 | 4.3:+27185626 | MS.gene059423:CDS |
| GTTAATCGATCTTGTTAAAG+TGG | 0.393377 | 4.3:+27185503 | MS.gene059423:CDS |
| AACAAAGAAAATTACGAATT+GGG | 0.394736 | 4.3:+27185219 | MS.gene059423:CDS |
| AGCATACATATTTCAATCCT+AGG | 0.403073 | 4.3:-27185657 | None:intergenic |
| TCATAGCTTCATGTTCTCTT+GGG | 0.406275 | 4.3:-27184622 | None:intergenic |
| CTCCATTGAGGAAGTATGTT+AGG | 0.425117 | 4.3:+27185586 | MS.gene059423:CDS |
| TTGATCATTTCATCAAGAAC+TGG | 0.432518 | 4.3:-27185306 | None:intergenic |
| GCCCTAGCTATTCCTGAAGA+TGG | 0.453375 | 4.3:+27184938 | MS.gene059423:CDS |
| ATTACCTCAACTACCATAAG+AGG | 0.454646 | 4.3:+27185481 | MS.gene059423:CDS |
| CACAAAATTGATTTCAGAGA+AGG | 0.464239 | 4.3:+27185273 | MS.gene059423:CDS |
| GCTTAACAAGGCTTTGGCTG+TGG | 0.469408 | 4.3:+27185632 | MS.gene059423:CDS |
| AGCTAGGGCAGTGGCAAGGA+GGG | 0.490733 | 4.3:-27184924 | None:intergenic |
| TCATCAAGAACTGGAAGAGC+TGG | 0.494231 | 4.3:-27185297 | None:intergenic |
| AGGCTTTGGCTGTGGACCCT+AGG | 0.500768 | 4.3:+27185640 | MS.gene059423:CDS |
| TACCTAACATACTTCCTCAA+TGG | 0.510094 | 4.3:-27185588 | None:intergenic |
| TTCCATCTTCAGGAATAGCT+AGG | 0.514348 | 4.3:-27184940 | None:intergenic |
| ACAAAGTGATGCCCTTTACC+AGG | 0.515306 | 4.3:+27184491 | MS.gene059423:CDS |
| TCTGGAAGACATCAAGAAGT+TGG | 0.517673 | 4.3:+27184453 | MS.gene059423:CDS |
| ATAGTGATTCCATCACCAAC+AGG | 0.521355 | 4.3:-27185681 | None:intergenic |
| AAATTGTGTGTACCTGGTAA+AGG | 0.529467 | 4.3:-27184503 | None:intergenic |
| ATGACAACCTCTGCAGATGA+AGG | 0.539968 | 4.3:+27184827 | MS.gene059423:CDS |
| AATTGTGTGTACCTGGTAAA+GGG | 0.545677 | 4.3:-27184502 | None:intergenic |
| ATGTTCTCTTGGGAAGACAC+TGG | 0.546160 | 4.3:-27184612 | None:intergenic |
| GTTAAAGTGGGAGGTGTGAT+CGG | 0.548322 | 4.3:+27185516 | MS.gene059423:CDS |
| AACCACAGATCCATTCCATA+AGG | 0.552846 | 4.3:-27185550 | None:intergenic |
| TTAACCTCTTATGGTAGTTG+AGG | 0.561488 | 4.3:-27185485 | None:intergenic |
| TACGACAACACCTTATGGAA+TGG | 0.561597 | 4.3:+27185540 | MS.gene059423:CDS |
| AGCTATTCCTGAAGATGGAA+AGG | 0.565418 | 4.3:+27184943 | MS.gene059423:CDS |
| ATCGATCTTGTTAAAGTGGG+AGG | 0.565493 | 4.3:+27185507 | MS.gene059423:CDS |
| ATGGAAATTGGTGTCTACAC+TGG | 0.567113 | 4.3:+27184896 | MS.gene059423:CDS |
| AAATCAATTACTTGATCCTA+CGG | 0.569584 | 4.3:-27185707 | None:intergenic |
| TCCATCTTCAGGAATAGCTA+GGG | 0.570121 | 4.3:-27184939 | None:intergenic |
| TTAATCGATCTTGTTAAAGT+GGG | 0.572330 | 4.3:+27185504 | MS.gene059423:CDS |
| GAAATATGTATGCTTCCTGT+TGG | 0.574969 | 4.3:+27185666 | MS.gene059423:CDS |
| ACTTCCTCAATGGAGCATCA+GGG | 0.579332 | 4.3:-27185578 | None:intergenic |
| TGTATGCTTCCTGTTGGTGA+TGG | 0.580796 | 4.3:+27185672 | MS.gene059423:CDS |
| TAGCTAGGGCAGTGGCAAGG+AGG | 0.584857 | 4.3:-27184925 | None:intergenic |
| CTTCCTCAATGGAGCATCAG+GGG | 0.588342 | 4.3:-27185577 | None:intergenic |
| GCATACATATTTCAATCCTA+GGG | 0.589825 | 4.3:-27185656 | None:intergenic |
| TTCAGGAATAGCTAGGGCAG+TGG | 0.598779 | 4.3:-27184933 | None:intergenic |
| AAATTGTCCTTCATCTGCAG+AGG | 0.606260 | 4.3:-27184834 | None:intergenic |
| AGTGTAGACACCAATTTCCA+TGG | 0.614822 | 4.3:-27184894 | None:intergenic |
| TATCAATGCTAAGAATACCA+TGG | 0.621099 | 4.3:+27184877 | MS.gene059423:CDS |
| CACCTTATGGAATGGATCTG+TGG | 0.632572 | 4.3:+27185548 | MS.gene059423:CDS |
| ATGGAATCACTATCTGCCGT+AGG | 0.633911 | 4.3:+27185691 | MS.gene059423:CDS |
| GAATAGCTAGGGCAGTGGCA+AGG | 0.635775 | 4.3:-27184928 | None:intergenic |
| TTCCTCAATGGAGCATCAGG+GGG | 0.651997 | 4.3:-27185576 | None:intergenic |
| AGGTCACAGCAAAACACCCA+TGG | 0.652192 | 4.3:+27184657 | MS.gene059423:CDS |
| AGCTATGAAAGAGTTGAGAG+AGG | 0.657735 | 4.3:+27184637 | MS.gene059423:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATCTAATTGATTATATAA+TGG | - | chr4.3:27185016-27185035 | None:intergenic | 10.0% |
| !! | TGCTAAAAAATTTAAATTAT+GGG | - | chr4.3:27184538-27184557 | None:intergenic | 10.0% |
| !! | TTGCTAAAAAATTTAAATTA+TGG | - | chr4.3:27184539-27184558 | None:intergenic | 10.0% |
| !!! | TGATTTTTTGTTAATTTTTT+AGG | + | chr4.3:27185407-27185426 | MS.gene059423:intron | 10.0% |
| !! | AACAAAGAAAATTACGAATT+GGG | + | chr4.3:27185219-27185238 | MS.gene059423:CDS | 20.0% |
| !! | TAACAAAGAAAATTACGAAT+TGG | + | chr4.3:27185218-27185237 | MS.gene059423:CDS | 20.0% |
| !!! | ATGAAAAAAGTTCTAACAAA+AGG | - | chr4.3:27185068-27185087 | None:intergenic | 20.0% |
| !!! | ATTTTTTAGCAAGAACTTTT+CGG | + | chr4.3:27184547-27184566 | MS.gene059423:intron | 20.0% |
| !!! | ATTTTTTAGGAAAAGAATCA+TGG | + | chr4.3:27185420-27185439 | MS.gene059423:intron | 20.0% |
| !!! | TTTTTCTTCATAGAAAAAGA+TGG | - | chr4.3:27185346-27185365 | None:intergenic | 20.0% |
| ! | ATTGAACAAAACAACAAAAC+AGG | + | chr4.3:27184798-27184817 | MS.gene059423:intron | 25.0% |
| ! | GAATTACGAATTATTACCAT+GGG | - | chr4.3:27184676-27184695 | None:intergenic | 25.0% |
| ! | GAGATATCATGTAAAATCAA+GGG | + | chr4.3:27185142-27185161 | MS.gene059423:intron | 25.0% |
| ! | TCAATGGAACCTAATTAATA+AGG | - | chr4.3:27184732-27184751 | None:intergenic | 25.0% |
| ! | TCCAATTGATATAAGTTCAA+TGG | - | chr4.3:27184748-27184767 | None:intergenic | 25.0% |
| ! | TCCATTGAACTTATATCAAT+TGG | + | chr4.3:27184744-27184763 | MS.gene059423:intron | 25.0% |
| ! | TGAATTACGAATTATTACCA+TGG | - | chr4.3:27184677-27184696 | None:intergenic | 25.0% |
| ! | TGAGATATCATGTAAAATCA+AGG | + | chr4.3:27185141-27185160 | MS.gene059423:intron | 25.0% |
| ! | TTAATCGATCTTGTTAAAGT+GGG | + | chr4.3:27185504-27185523 | MS.gene059423:CDS | 25.0% |
| !! | CTTTTGTGTTTAGTAAAGTA+AGG | + | chr4.3:27185089-27185108 | MS.gene059423:intron | 25.0% |
| !! | GGTCTAATACTTAATTTTTC+TGG | + | chr4.3:27185163-27185182 | MS.gene059423:intron | 25.0% |
| !! | GTTGTAATTGTTACAGATTT+TGG | + | chr4.3:27185185-27185204 | MS.gene059423:intron | 25.0% |
| !!! | GTACTATAGAGATTTTGTTT+TGG | + | chr4.3:27185608-27185627 | MS.gene059423:CDS | 25.0% |
| !!! | TCTTAGCATTGATAAGTTTA+AGG | - | chr4.3:27184871-27184890 | None:intergenic | 25.0% |
| AAAATGAAATTGTGTGTACC+TGG | - | chr4.3:27184512-27184531 | None:intergenic | 30.0% | |
| AGCATACATATTTCAATCCT+AGG | - | chr4.3:27185660-27185679 | None:intergenic | 30.0% | |
| ATAAATACCTTTCCATCTTC+AGG | - | chr4.3:27184953-27184972 | None:intergenic | 30.0% | |
| CTACCTGTAATTAAAAAAGC+TGG | + | chr4.3:27185243-27185262 | MS.gene059423:CDS | 30.0% | |
| CTCGATCTACCTTATTAATT+AGG | + | chr4.3:27184720-27184739 | MS.gene059423:intron | 30.0% | |
| GCATACATATTTCAATCCTA+GGG | - | chr4.3:27185659-27185678 | None:intergenic | 30.0% | |
| GTGTTTAGTAAAGTAAGGTT+AGG | + | chr4.3:27185094-27185113 | MS.gene059423:intron | 30.0% | |
| GTTAATCGATCTTGTTAAAG+TGG | + | chr4.3:27185503-27185522 | MS.gene059423:CDS | 30.0% | |
| TATCAATGCTAAGAATACCA+TGG | + | chr4.3:27184877-27184896 | MS.gene059423:CDS | 30.0% | |
| TTGATCATTTCATCAAGAAC+TGG | - | chr4.3:27185309-27185328 | None:intergenic | 30.0% | |
| ! | CACAAAATTGATTTCAGAGA+AGG | + | chr4.3:27185273-27185292 | MS.gene059423:CDS | 30.0% |
| !! | TAGCTACGATTTCATTTTTG+TGG | + | chr4.3:27185443-27185462 | MS.gene059423:CDS | 30.0% |
| !!! | ACACCAGCTTTTTTAATTAC+AGG | - | chr4.3:27185249-27185268 | None:intergenic | 30.0% |
| !!! | ATTGTTACAGATTTTGGCTA+TGG | + | chr4.3:27185191-27185210 | MS.gene059423:intron | 30.0% |
| !!! | TTTTGTTTTGGAGCTTAACA+AGG | + | chr4.3:27185620-27185639 | MS.gene059423:CDS | 30.0% |
| AAATTGTGTGTACCTGGTAA+AGG | - | chr4.3:27184506-27184525 | None:intergenic | 35.0% | |
| AATTGTGTGTACCTGGTAAA+GGG | - | chr4.3:27184505-27184524 | None:intergenic | 35.0% | |
| ATTACCTCAACTACCATAAG+AGG | + | chr4.3:27185481-27185500 | MS.gene059423:CDS | 35.0% | |
| CAAGATCGATTAACCTCTTA+TGG | - | chr4.3:27185497-27185516 | None:intergenic | 35.0% | |
| GAAATATGTATGCTTCCTGT+TGG | + | chr4.3:27185666-27185685 | MS.gene059423:CDS | 35.0% | |
| GATCAAAAGCAAACTGAATC+TGG | + | chr4.3:27184435-27184454 | MS.gene059423:CDS | 35.0% | |
| GCTAAGAATACCATGGAAAT+TGG | + | chr4.3:27184884-27184903 | MS.gene059423:CDS | 35.0% | |
| TACCTAACATACTTCCTCAA+TGG | - | chr4.3:27185591-27185610 | None:intergenic | 35.0% | |
| TCATAGCTTCATGTTCTCTT+GGG | - | chr4.3:27184625-27184644 | None:intergenic | 35.0% | |
| TTAACCTCTTATGGTAGTTG+AGG | - | chr4.3:27185488-27185507 | None:intergenic | 35.0% | |
| TTCATAGCTTCATGTTCTCT+TGG | - | chr4.3:27184626-27184645 | None:intergenic | 35.0% | |
| !! | AGTTTGCTTTTGATCTTCGT+TGG | - | chr4.3:27184430-27184449 | None:intergenic | 35.0% |
| AAATTGTCCTTCATCTGCAG+AGG | - | chr4.3:27184837-27184856 | None:intergenic | 40.0% | |
| AACCACAGATCCATTCCATA+AGG | - | chr4.3:27185553-27185572 | None:intergenic | 40.0% | |
| AGCTATGAAAGAGTTGAGAG+AGG | + | chr4.3:27184637-27184656 | MS.gene059423:CDS | 40.0% | |
| AGCTATTCCTGAAGATGGAA+AGG | + | chr4.3:27184943-27184962 | MS.gene059423:CDS | 40.0% | |
| AGTGTAGACACCAATTTCCA+TGG | - | chr4.3:27184897-27184916 | None:intergenic | 40.0% | |
| ATAGTGATTCCATCACCAAC+AGG | - | chr4.3:27185684-27185703 | None:intergenic | 40.0% | |
| ATCGATCTTGTTAAAGTGGG+AGG | + | chr4.3:27185507-27185526 | MS.gene059423:CDS | 40.0% | |
| TACGACAACACCTTATGGAA+TGG | + | chr4.3:27185540-27185559 | MS.gene059423:CDS | 40.0% | |
| TCCATCTTCAGGAATAGCTA+GGG | - | chr4.3:27184942-27184961 | None:intergenic | 40.0% | |
| TCTGGAAGACATCAAGAAGT+TGG | + | chr4.3:27184453-27184472 | MS.gene059423:CDS | 40.0% | |
| TTCCATCTTCAGGAATAGCT+AGG | - | chr4.3:27184943-27184962 | None:intergenic | 40.0% | |
| ! | ATGGAAATTGGTGTCTACAC+TGG | + | chr4.3:27184896-27184915 | MS.gene059423:CDS | 40.0% |
| ! | CTCCATTGAGGAAGTATGTT+AGG | + | chr4.3:27185586-27185605 | MS.gene059423:CDS | 40.0% |
| ! | TTTGGAGCTTAACAAGGCTT+TGG | + | chr4.3:27185626-27185645 | MS.gene059423:CDS | 40.0% |
| ACAAAGTGATGCCCTTTACC+AGG | + | chr4.3:27184491-27184510 | MS.gene059423:CDS | 45.0% | |
| ATGACAACCTCTGCAGATGA+AGG | + | chr4.3:27184827-27184846 | MS.gene059423:CDS | 45.0% | |
| ATGGAATCACTATCTGCCGT+AGG | + | chr4.3:27185691-27185710 | MS.gene059423:CDS | 45.0% | |
| ATGTTCTCTTGGGAAGACAC+TGG | - | chr4.3:27184615-27184634 | None:intergenic | 45.0% | |
| CACCTTATGGAATGGATCTG+TGG | + | chr4.3:27185548-27185567 | MS.gene059423:CDS | 45.0% | |
| TCATCAAGAACTGGAAGAGC+TGG | - | chr4.3:27185300-27185319 | None:intergenic | 45.0% | |
| ! | ACTTCCTCAATGGAGCATCA+GGG | - | chr4.3:27185581-27185600 | None:intergenic | 45.0% |
| ! | GTTAAAGTGGGAGGTGTGAT+CGG | + | chr4.3:27185516-27185535 | MS.gene059423:CDS | 45.0% |
| ! | TACTTCCTCAATGGAGCATC+AGG | - | chr4.3:27185582-27185601 | None:intergenic | 45.0% |
| ! | TGTATGCTTCCTGTTGGTGA+TGG | + | chr4.3:27185672-27185691 | MS.gene059423:CDS | 45.0% |
| AGGTCACAGCAAAACACCCA+TGG | + | chr4.3:27184657-27184676 | MS.gene059423:CDS | 50.0% | |
| GCCCTAGCTATTCCTGAAGA+TGG | + | chr4.3:27184938-27184957 | MS.gene059423:CDS | 50.0% | |
| TCGGCTACGACAACACCTTA+TGG | + | chr4.3:27185535-27185554 | MS.gene059423:CDS | 50.0% | |
| TTCAGGAATAGCTAGGGCAG+TGG | - | chr4.3:27184936-27184955 | None:intergenic | 50.0% | |
| ! | CTTCCTCAATGGAGCATCAG+GGG | - | chr4.3:27185580-27185599 | None:intergenic | 50.0% |
| ! | GCTTAACAAGGCTTTGGCTG+TGG | + | chr4.3:27185632-27185651 | MS.gene059423:CDS | 50.0% |
| ! | TTCCTCAATGGAGCATCAGG+GGG | - | chr4.3:27185579-27185598 | None:intergenic | 50.0% |
| GAATAGCTAGGGCAGTGGCA+AGG | - | chr4.3:27184931-27184950 | None:intergenic | 55.0% | |
| AGCTAGGGCAGTGGCAAGGA+GGG | - | chr4.3:27184927-27184946 | None:intergenic | 60.0% | |
| CACCCCCTGATGCTCCATTG+AGG | + | chr4.3:27185574-27185593 | MS.gene059423:CDS | 60.0% | |
| TAGCTAGGGCAGTGGCAAGG+AGG | - | chr4.3:27184928-27184947 | None:intergenic | 60.0% | |
| ! | AGGCTTTGGCTGTGGACCCT+AGG | + | chr4.3:27185640-27185659 | MS.gene059423:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 27184420 | 27185722 | 27184420 | ID=MS.gene059423 |
| chr4.3 | mRNA | 27184420 | 27185722 | 27184420 | ID=MS.gene059423.t1;Parent=MS.gene059423 |
| chr4.3 | exon | 27184420 | 27184512 | 27184420 | ID=MS.gene059423.t1.exon1;Parent=MS.gene059423.t1 |
| chr4.3 | CDS | 27184420 | 27184512 | 27184420 | ID=cds.MS.gene059423.t1;Parent=MS.gene059423.t1 |
| chr4.3 | exon | 27184599 | 27184678 | 27184599 | ID=MS.gene059423.t1.exon2;Parent=MS.gene059423.t1 |
| chr4.3 | CDS | 27184599 | 27184678 | 27184599 | ID=cds.MS.gene059423.t1;Parent=MS.gene059423.t1 |
| chr4.3 | exon | 27184820 | 27184964 | 27184820 | ID=MS.gene059423.t1.exon3;Parent=MS.gene059423.t1 |
| chr4.3 | CDS | 27184820 | 27184964 | 27184820 | ID=cds.MS.gene059423.t1;Parent=MS.gene059423.t1 |
| chr4.3 | exon | 27185201 | 27185332 | 27185201 | ID=MS.gene059423.t1.exon4;Parent=MS.gene059423.t1 |
| chr4.3 | CDS | 27185201 | 27185332 | 27185201 | ID=cds.MS.gene059423.t1;Parent=MS.gene059423.t1 |
| chr4.3 | exon | 27185429 | 27185722 | 27185429 | ID=MS.gene059423.t1.exon5;Parent=MS.gene059423.t1 |
| chr4.3 | CDS | 27185429 | 27185722 | 27185429 | ID=cds.MS.gene059423.t1;Parent=MS.gene059423.t1 |
| Gene Sequence |
| Protein sequence |
