Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26463.t1 | Q40313.1 | 100 | 247 | 0 | 0 | 1 | 247 | 1 | 247 | 1.30E-138 | 502.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26463.t1 | Q40313 | 100.0 | 247 | 0 | 0 | 1 | 247 | 1 | 247 | 3.1e-141 | 502.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26463.t1 | G7JK14 | 99.6 | 247 | 1 | 0 | 1 | 247 | 1 | 247 | 3.5e-138 | 500.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene030303 | MS.gene26463 | PPI |
| MS.gene064029 | MS.gene26463 | PPI |
| MS.gene26463 | MS.gene074442 | PPI |
| MS.gene26463 | MS.gene35069 | PPI |
| MS.gene26463 | MS.gene20157 | PPI |
| MS.gene26463 | MS.gene051092 | PPI |
| MS.gene26463 | MS.gene25100 | PPI |
| MS.gene028389 | MS.gene26463 | PPI |
| MS.gene66349 | MS.gene26463 | PPI |
| MS.gene26463 | MS.gene06173 | PPI |
| MS.gene26463 | MS.gene049025 | PPI |
| MS.gene26463 | MS.gene28756 | PPI |
| MS.gene55886 | MS.gene26463 | PPI |
| MS.gene26463 | MS.gene75055 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26463.t1 | MTR_4g085590 | 99.595 | 247 | 1 | 0 | 1 | 247 | 1 | 247 | 0.0 | 509 |
| MS.gene26463.t1 | MTR_4g094815 | 68.980 | 245 | 76 | 0 | 3 | 247 | 4 | 248 | 1.98e-130 | 369 |
| MS.gene26463.t1 | MTR_4g094925 | 64.228 | 246 | 84 | 1 | 1 | 246 | 1 | 242 | 7.95e-121 | 344 |
| MS.gene26463.t1 | MTR_4g094898 | 67.347 | 245 | 80 | 0 | 3 | 247 | 4 | 248 | 1.97e-119 | 341 |
| MS.gene26463.t1 | MTR_4g094812 | 68.293 | 246 | 77 | 1 | 1 | 246 | 1 | 245 | 6.03e-118 | 337 |
| MS.gene26463.t1 | MTR_4g094925 | 67.914 | 187 | 60 | 0 | 60 | 246 | 25 | 211 | 8.71e-98 | 285 |
| MS.gene26463.t1 | MTR_8g021225 | 57.965 | 226 | 95 | 0 | 20 | 245 | 8 | 233 | 3.06e-93 | 274 |
| MS.gene26463.t1 | MTR_4g094898 | 70.053 | 187 | 56 | 0 | 61 | 247 | 1 | 187 | 1.37e-92 | 270 |
| MS.gene26463.t1 | MTR_8g101900 | 58.036 | 224 | 93 | 1 | 23 | 246 | 12 | 234 | 4.75e-87 | 258 |
| MS.gene26463.t1 | MTR_6g091680 | 55.357 | 224 | 99 | 1 | 23 | 246 | 15 | 237 | 6.39e-84 | 250 |
| MS.gene26463.t1 | MTR_4g094368 | 52.212 | 226 | 105 | 2 | 21 | 244 | 3 | 227 | 1.92e-79 | 239 |
| MS.gene26463.t1 | MTR_2g070410 | 38.991 | 218 | 121 | 4 | 29 | 245 | 91 | 297 | 5.09e-46 | 155 |
| MS.gene26463.t1 | MTR_2g070410 | 40.116 | 172 | 99 | 2 | 29 | 200 | 91 | 258 | 7.05e-37 | 131 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26463.t1 | AT4G34050 | 89.669 | 242 | 25 | 0 | 5 | 246 | 44 | 285 | 1.62e-168 | 466 |
| MS.gene26463.t1 | AT4G34050 | 89.669 | 242 | 25 | 0 | 5 | 246 | 17 | 258 | 1.75e-168 | 465 |
| MS.gene26463.t1 | AT4G26220 | 58.850 | 226 | 92 | 1 | 21 | 246 | 7 | 231 | 3.83e-97 | 284 |
| MS.gene26463.t1 | AT1G67980 | 54.936 | 233 | 99 | 3 | 16 | 246 | 3 | 231 | 5.27e-90 | 266 |
| MS.gene26463.t1 | AT1G67990 | 53.509 | 228 | 101 | 3 | 21 | 246 | 8 | 232 | 6.99e-84 | 250 |
| MS.gene26463.t1 | AT1G24735 | 53.540 | 226 | 101 | 3 | 23 | 246 | 16 | 239 | 4.00e-80 | 241 |
| MS.gene26463.t1 | AT4G34050 | 88.618 | 123 | 14 | 0 | 124 | 246 | 25 | 147 | 4.29e-80 | 237 |
| MS.gene26463.t1 | AT1G24735 | 54.301 | 186 | 83 | 2 | 61 | 246 | 11 | 194 | 3.22e-66 | 204 |
| MS.gene26463.t1 | AT1G24735 | 54.301 | 186 | 83 | 2 | 61 | 246 | 107 | 290 | 3.61e-65 | 204 |
| MS.gene26463.t1 | AT3G62000 | 40.351 | 228 | 125 | 5 | 19 | 245 | 60 | 277 | 4.55e-49 | 163 |
| MS.gene26463.t1 | AT1G67980 | 45.181 | 166 | 87 | 2 | 81 | 246 | 2 | 163 | 1.31e-47 | 155 |
| MS.gene26463.t1 | AT3G61990 | 42.396 | 217 | 112 | 5 | 29 | 245 | 86 | 289 | 1.32e-46 | 157 |
| MS.gene26463.t1 | AT3G62000 | 38.710 | 217 | 122 | 5 | 19 | 234 | 60 | 266 | 1.11e-39 | 140 |
Find 57 sgRNAs with CRISPR-Local
Find 85 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTAGCATTGATAAGTTTA+AGG | 0.154244 | 4.1:-23912666 | None:intergenic |
| CAAGATCGATTAACCTCTTA+TGG | 0.268687 | 4.1:-23913292 | None:intergenic |
| ATAAATACCTTTCCATCTTC+AGG | 0.276991 | 4.1:-23912748 | None:intergenic |
| GCTAAGAATACCATGGAAAT+TGG | 0.278001 | 4.1:+23912682 | MS.gene26463:CDS |
| GACCTCTCTCAACTCTTTCA+TGG | 0.280785 | 4.1:-23912437 | None:intergenic |
| TTCATGGCTTCATGTTCTCT+TGG | 0.303195 | 4.1:-23912421 | None:intergenic |
| TAACAAAGAAAATTACGAAT+TGG | 0.303369 | 4.1:+23913016 | MS.gene26463:CDS |
| GATCAAAAGCAAACTGAATC+TGG | 0.306656 | 4.1:+23912234 | MS.gene26463:CDS |
| TCGGCTACGACAACACCTTA+TGG | 0.326245 | 4.1:+23913333 | MS.gene26463:CDS |
| TACTTCCTCAATGGAGCATC+AGG | 0.355841 | 4.1:-23913377 | None:intergenic |
| TTTGGAGCTTAACAAGGCTT+TGG | 0.370464 | 4.1:+23913424 | MS.gene26463:CDS |
| GTTAATCGATCTTGTTAAAG+TGG | 0.393377 | 4.1:+23913301 | MS.gene26463:CDS |
| AACAAAGAAAATTACGAATT+GGG | 0.394736 | 4.1:+23913017 | MS.gene26463:CDS |
| TCATGGCTTCATGTTCTCTT+GGG | 0.398259 | 4.1:-23912420 | None:intergenic |
| AGCATACATATTTCAATCCT+AGG | 0.403073 | 4.1:-23913455 | None:intergenic |
| CTCCATTGAGGAAGTATGTT+AGG | 0.425117 | 4.1:+23913384 | MS.gene26463:CDS |
| TTGATCATTTCATCAAGAAC+TGG | 0.432518 | 4.1:-23913104 | None:intergenic |
| GCCCTAGCTATTCCTGAAGA+TGG | 0.453375 | 4.1:+23912736 | MS.gene26463:CDS |
| ATTACCTCAACTACCATAAG+AGG | 0.454646 | 4.1:+23913279 | MS.gene26463:CDS |
| CACAAAATTGATTTCAGAGA+AGG | 0.464239 | 4.1:+23913071 | MS.gene26463:CDS |
| GCTTAACAAGGCTTTGGCTG+TGG | 0.469408 | 4.1:+23913430 | MS.gene26463:CDS |
| AGCTAGGGCAGTGGCAAGGA+GGG | 0.490733 | 4.1:-23912722 | None:intergenic |
| TCATCAAGAACTGGAAGAGC+TGG | 0.494231 | 4.1:-23913095 | None:intergenic |
| AGGCTTTGGCTGTGGACCCT+AGG | 0.500768 | 4.1:+23913438 | MS.gene26463:CDS |
| TACCTAACATACTTCCTCAA+TGG | 0.510094 | 4.1:-23913386 | None:intergenic |
| TTCCATCTTCAGGAATAGCT+AGG | 0.514348 | 4.1:-23912738 | None:intergenic |
| TCTGGAAGACATCAAGAAGT+TGG | 0.517673 | 4.1:+23912252 | MS.gene26463:CDS |
| ATAGTGATTCCATCACCAAC+AGG | 0.521355 | 4.1:-23913479 | None:intergenic |
| ACAAAGTGATGCTCTTTACC+AGG | 0.531020 | 4.1:+23912290 | MS.gene26463:CDS |
| ATGACAACCTCTGCAGATGA+AGG | 0.539968 | 4.1:+23912625 | MS.gene26463:CDS |
| ATGTTCTCTTGGGAAGACAC+TGG | 0.546160 | 4.1:-23912410 | None:intergenic |
| GTTAAAGTGGGAGGTGTGAT+CGG | 0.548322 | 4.1:+23913314 | MS.gene26463:CDS |
| AACCACAGATCCATTCCATA+AGG | 0.552846 | 4.1:-23913348 | None:intergenic |
| TTAACCTCTTATGGTAGTTG+AGG | 0.561488 | 4.1:-23913283 | None:intergenic |
| TACGACAACACCTTATGGAA+TGG | 0.561597 | 4.1:+23913338 | MS.gene26463:CDS |
| AGCTATTCCTGAAGATGGAA+AGG | 0.565418 | 4.1:+23912741 | MS.gene26463:CDS |
| ATCGATCTTGTTAAAGTGGG+AGG | 0.565493 | 4.1:+23913305 | MS.gene26463:CDS |
| ATGGAAATTGGTGTCTACAC+TGG | 0.567113 | 4.1:+23912694 | MS.gene26463:CDS |
| AAATCAATTACTTGATCCTA+CGG | 0.569584 | 4.1:-23913505 | None:intergenic |
| TCCATCTTCAGGAATAGCTA+GGG | 0.570121 | 4.1:-23912737 | None:intergenic |
| TTAATCGATCTTGTTAAAGT+GGG | 0.572330 | 4.1:+23913302 | MS.gene26463:CDS |
| GAAATATGTATGCTTCCTGT+TGG | 0.574969 | 4.1:+23913464 | MS.gene26463:CDS |
| ACTTCCTCAATGGAGCATCA+GGG | 0.579332 | 4.1:-23913376 | None:intergenic |
| TGTATGCTTCCTGTTGGTGA+TGG | 0.580796 | 4.1:+23913470 | MS.gene26463:CDS |
| TAGCTAGGGCAGTGGCAAGG+AGG | 0.584857 | 4.1:-23912723 | None:intergenic |
| CTTCCTCAATGGAGCATCAG+GGG | 0.588342 | 4.1:-23913375 | None:intergenic |
| GCATACATATTTCAATCCTA+GGG | 0.589825 | 4.1:-23913454 | None:intergenic |
| TTCAGGAATAGCTAGGGCAG+TGG | 0.598779 | 4.1:-23912731 | None:intergenic |
| AAATTGTCCTTCATCTGCAG+AGG | 0.606260 | 4.1:-23912632 | None:intergenic |
| AGTGTAGACACCAATTTCCA+TGG | 0.614822 | 4.1:-23912692 | None:intergenic |
| TATCAATGCTAAGAATACCA+TGG | 0.621099 | 4.1:+23912675 | MS.gene26463:CDS |
| CACCTTATGGAATGGATCTG+TGG | 0.632572 | 4.1:+23913346 | MS.gene26463:CDS |
| ATGGAATCACTATCTGCCGT+AGG | 0.633911 | 4.1:+23913489 | MS.gene26463:CDS |
| GAATAGCTAGGGCAGTGGCA+AGG | 0.635775 | 4.1:-23912726 | None:intergenic |
| TTCCTCAATGGAGCATCAGG+GGG | 0.651997 | 4.1:-23913374 | None:intergenic |
| AGGTCACAGCAAAACACCCA+TGG | 0.652192 | 4.1:+23912455 | MS.gene26463:CDS |
| AGCCATGAAAGAGTTGAGAG+AGG | 0.660628 | 4.1:+23912435 | MS.gene26463:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATCTAATTGATTATATAA+TGG | - | chr4.1:23912814-23912833 | None:intergenic | 10.0% |
| !! | ATGCTAAAAAATTTAAATTA+TGG | - | chr4.1:23912338-23912357 | None:intergenic | 10.0% |
| !! | TGCTAAAAAATTTAAATTAT+GGG | - | chr4.1:23912337-23912356 | None:intergenic | 10.0% |
| !!! | TGATTTTTTGTTAATTTTTT+AGG | + | chr4.1:23913205-23913224 | MS.gene26463:intron | 10.0% |
| !! | GAATTAAAAATTATTACCAT+GGG | - | chr4.1:23912474-23912493 | None:intergenic | 15.0% |
| !! | TGAATTAAAAATTATTACCA+TGG | - | chr4.1:23912475-23912494 | None:intergenic | 15.0% |
| !! | AACAAAGAAAATTACGAATT+GGG | + | chr4.1:23913017-23913036 | MS.gene26463:CDS | 20.0% |
| !! | TAACAAAGAAAATTACGAAT+TGG | + | chr4.1:23913016-23913035 | MS.gene26463:CDS | 20.0% |
| !!! | ATGAAAAAAGTTCTAACAAA+AGG | - | chr4.1:23912866-23912885 | None:intergenic | 20.0% |
| !!! | ATTTTTTAGGAAAAGAATCA+TGG | + | chr4.1:23913218-23913237 | MS.gene26463:intron | 20.0% |
| !!! | TTTTTCTTCATAGAAAAAGA+TGG | - | chr4.1:23913144-23913163 | None:intergenic | 20.0% |
| ! | ATTGAACAAAACAACAAAAC+AGG | + | chr4.1:23912596-23912615 | MS.gene26463:intron | 25.0% |
| ! | GAGATATCATGTAAAATCAA+GGG | + | chr4.1:23912940-23912959 | MS.gene26463:intron | 25.0% |
| ! | TCAATGGAACCTAATTAATA+AGG | - | chr4.1:23912530-23912549 | None:intergenic | 25.0% |
| ! | TCCAATTGATATAAGTTCAA+TGG | - | chr4.1:23912546-23912565 | None:intergenic | 25.0% |
| ! | TCCATTGAACTTATATCAAT+TGG | + | chr4.1:23912542-23912561 | MS.gene26463:intron | 25.0% |
| ! | TGAGATATCATGTAAAATCA+AGG | + | chr4.1:23912939-23912958 | MS.gene26463:intron | 25.0% |
| ! | TTAATCGATCTTGTTAAAGT+GGG | + | chr4.1:23913302-23913321 | MS.gene26463:CDS | 25.0% |
| !! | CTTTTGTGTTTAGTAAAGTA+AGG | + | chr4.1:23912887-23912906 | MS.gene26463:intron | 25.0% |
| !! | GGTCTAATACTTAATTTTTC+TGG | + | chr4.1:23912961-23912980 | MS.gene26463:intron | 25.0% |
| !! | GTTGTAATTGTTACAGATTT+TGG | + | chr4.1:23912983-23913002 | MS.gene26463:intron | 25.0% |
| !!! | GTACTATAGAGATTTTGTTT+TGG | + | chr4.1:23913406-23913425 | MS.gene26463:CDS | 25.0% |
| !!! | TCTTAGCATTGATAAGTTTA+AGG | - | chr4.1:23912669-23912688 | None:intergenic | 25.0% |
| AAAATGAAATTGTGTGTACC+TGG | - | chr4.1:23912311-23912330 | None:intergenic | 30.0% | |
| AGCATACATATTTCAATCCT+AGG | - | chr4.1:23913458-23913477 | None:intergenic | 30.0% | |
| ATAAATACCTTTCCATCTTC+AGG | - | chr4.1:23912751-23912770 | None:intergenic | 30.0% | |
| CTACCTGTAATTAAAAAAGC+TGG | + | chr4.1:23913041-23913060 | MS.gene26463:CDS | 30.0% | |
| CTCGATCTACCTTATTAATT+AGG | + | chr4.1:23912518-23912537 | MS.gene26463:intron | 30.0% | |
| GCATACATATTTCAATCCTA+GGG | - | chr4.1:23913457-23913476 | None:intergenic | 30.0% | |
| GTGTTTAGTAAAGTAAGGTT+AGG | + | chr4.1:23912892-23912911 | MS.gene26463:intron | 30.0% | |
| GTTAATCGATCTTGTTAAAG+TGG | + | chr4.1:23913301-23913320 | MS.gene26463:CDS | 30.0% | |
| TATCAATGCTAAGAATACCA+TGG | + | chr4.1:23912675-23912694 | MS.gene26463:CDS | 30.0% | |
| TTGATCATTTCATCAAGAAC+TGG | - | chr4.1:23913107-23913126 | None:intergenic | 30.0% | |
| ! | CACAAAATTGATTTCAGAGA+AGG | + | chr4.1:23913071-23913090 | MS.gene26463:CDS | 30.0% |
| !! | TAGCTACGATTTCATTTTTG+TGG | + | chr4.1:23913241-23913260 | MS.gene26463:CDS | 30.0% |
| !!! | ACACCAGCTTTTTTAATTAC+AGG | - | chr4.1:23913047-23913066 | None:intergenic | 30.0% |
| !!! | ATTGTTACAGATTTTGGCTA+TGG | + | chr4.1:23912989-23913008 | MS.gene26463:intron | 30.0% |
| !!! | TTTTGTTTTGGAGCTTAACA+AGG | + | chr4.1:23913418-23913437 | MS.gene26463:CDS | 30.0% |
| ATTACCTCAACTACCATAAG+AGG | + | chr4.1:23913279-23913298 | MS.gene26463:CDS | 35.0% | |
| CAAGATCGATTAACCTCTTA+TGG | - | chr4.1:23913295-23913314 | None:intergenic | 35.0% | |
| GAAATATGTATGCTTCCTGT+TGG | + | chr4.1:23913464-23913483 | MS.gene26463:CDS | 35.0% | |
| GATCAAAAGCAAACTGAATC+TGG | + | chr4.1:23912234-23912253 | MS.gene26463:CDS | 35.0% | |
| GCTAAGAATACCATGGAAAT+TGG | + | chr4.1:23912682-23912701 | MS.gene26463:CDS | 35.0% | |
| TACCTAACATACTTCCTCAA+TGG | - | chr4.1:23913389-23913408 | None:intergenic | 35.0% | |
| TTAACCTCTTATGGTAGTTG+AGG | - | chr4.1:23913286-23913305 | None:intergenic | 35.0% | |
| !! | AGTTTGCTTTTGATCTTCGT+TGG | - | chr4.1:23912229-23912248 | None:intergenic | 35.0% |
| AAATTGTCCTTCATCTGCAG+AGG | - | chr4.1:23912635-23912654 | None:intergenic | 40.0% | |
| AACCACAGATCCATTCCATA+AGG | - | chr4.1:23913351-23913370 | None:intergenic | 40.0% | |
| ACAAAGTGATGCTCTTTACC+AGG | + | chr4.1:23912290-23912309 | MS.gene26463:CDS | 40.0% | |
| AGCTATTCCTGAAGATGGAA+AGG | + | chr4.1:23912741-23912760 | MS.gene26463:CDS | 40.0% | |
| AGTGTAGACACCAATTTCCA+TGG | - | chr4.1:23912695-23912714 | None:intergenic | 40.0% | |
| ATAGTGATTCCATCACCAAC+AGG | - | chr4.1:23913482-23913501 | None:intergenic | 40.0% | |
| ATCGATCTTGTTAAAGTGGG+AGG | + | chr4.1:23913305-23913324 | MS.gene26463:CDS | 40.0% | |
| TACGACAACACCTTATGGAA+TGG | + | chr4.1:23913338-23913357 | MS.gene26463:CDS | 40.0% | |
| TCATGGCTTCATGTTCTCTT+GGG | - | chr4.1:23912423-23912442 | None:intergenic | 40.0% | |
| TCCATCTTCAGGAATAGCTA+GGG | - | chr4.1:23912740-23912759 | None:intergenic | 40.0% | |
| TCTGGAAGACATCAAGAAGT+TGG | + | chr4.1:23912252-23912271 | MS.gene26463:CDS | 40.0% | |
| TTCATGGCTTCATGTTCTCT+TGG | - | chr4.1:23912424-23912443 | None:intergenic | 40.0% | |
| TTCCATCTTCAGGAATAGCT+AGG | - | chr4.1:23912741-23912760 | None:intergenic | 40.0% | |
| ! | ATGGAAATTGGTGTCTACAC+TGG | + | chr4.1:23912694-23912713 | MS.gene26463:CDS | 40.0% |
| ! | CTCCATTGAGGAAGTATGTT+AGG | + | chr4.1:23913384-23913403 | MS.gene26463:CDS | 40.0% |
| ! | TTTGGAGCTTAACAAGGCTT+TGG | + | chr4.1:23913424-23913443 | MS.gene26463:CDS | 40.0% |
| AGCCATGAAAGAGTTGAGAG+AGG | + | chr4.1:23912435-23912454 | MS.gene26463:CDS | 45.0% | |
| ATGACAACCTCTGCAGATGA+AGG | + | chr4.1:23912625-23912644 | MS.gene26463:CDS | 45.0% | |
| ATGGAATCACTATCTGCCGT+AGG | + | chr4.1:23913489-23913508 | MS.gene26463:CDS | 45.0% | |
| ATGTTCTCTTGGGAAGACAC+TGG | - | chr4.1:23912413-23912432 | None:intergenic | 45.0% | |
| CACCTTATGGAATGGATCTG+TGG | + | chr4.1:23913346-23913365 | MS.gene26463:CDS | 45.0% | |
| GACCTCTCTCAACTCTTTCA+TGG | - | chr4.1:23912440-23912459 | None:intergenic | 45.0% | |
| TCATCAAGAACTGGAAGAGC+TGG | - | chr4.1:23913098-23913117 | None:intergenic | 45.0% | |
| ! | ACTTCCTCAATGGAGCATCA+GGG | - | chr4.1:23913379-23913398 | None:intergenic | 45.0% |
| ! | GTTAAAGTGGGAGGTGTGAT+CGG | + | chr4.1:23913314-23913333 | MS.gene26463:CDS | 45.0% |
| ! | TACTTCCTCAATGGAGCATC+AGG | - | chr4.1:23913380-23913399 | None:intergenic | 45.0% |
| ! | TGTATGCTTCCTGTTGGTGA+TGG | + | chr4.1:23913470-23913489 | MS.gene26463:CDS | 45.0% |
| AGGTCACAGCAAAACACCCA+TGG | + | chr4.1:23912455-23912474 | MS.gene26463:CDS | 50.0% | |
| GCCCTAGCTATTCCTGAAGA+TGG | + | chr4.1:23912736-23912755 | MS.gene26463:CDS | 50.0% | |
| TCGGCTACGACAACACCTTA+TGG | + | chr4.1:23913333-23913352 | MS.gene26463:CDS | 50.0% | |
| TTCAGGAATAGCTAGGGCAG+TGG | - | chr4.1:23912734-23912753 | None:intergenic | 50.0% | |
| ! | CTTCCTCAATGGAGCATCAG+GGG | - | chr4.1:23913378-23913397 | None:intergenic | 50.0% |
| ! | GCTTAACAAGGCTTTGGCTG+TGG | + | chr4.1:23913430-23913449 | MS.gene26463:CDS | 50.0% |
| ! | TTCCTCAATGGAGCATCAGG+GGG | - | chr4.1:23913377-23913396 | None:intergenic | 50.0% |
| GAATAGCTAGGGCAGTGGCA+AGG | - | chr4.1:23912729-23912748 | None:intergenic | 55.0% | |
| AGCTAGGGCAGTGGCAAGGA+GGG | - | chr4.1:23912725-23912744 | None:intergenic | 60.0% | |
| CACCCCCTGATGCTCCATTG+AGG | + | chr4.1:23913372-23913391 | MS.gene26463:CDS | 60.0% | |
| TAGCTAGGGCAGTGGCAAGG+AGG | - | chr4.1:23912726-23912745 | None:intergenic | 60.0% | |
| ! | AGGCTTTGGCTGTGGACCCT+AGG | + | chr4.1:23913438-23913457 | MS.gene26463:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 23912219 | 23913520 | 23912219 | ID=MS.gene26463 |
| chr4.1 | mRNA | 23912219 | 23913520 | 23912219 | ID=MS.gene26463.t1;Parent=MS.gene26463 |
| chr4.1 | exon | 23912219 | 23912311 | 23912219 | ID=MS.gene26463.t1.exon1;Parent=MS.gene26463.t1 |
| chr4.1 | CDS | 23912219 | 23912311 | 23912219 | ID=cds.MS.gene26463.t1;Parent=MS.gene26463.t1 |
| chr4.1 | exon | 23912397 | 23912476 | 23912397 | ID=MS.gene26463.t1.exon2;Parent=MS.gene26463.t1 |
| chr4.1 | CDS | 23912397 | 23912476 | 23912397 | ID=cds.MS.gene26463.t1;Parent=MS.gene26463.t1 |
| chr4.1 | exon | 23912618 | 23912762 | 23912618 | ID=MS.gene26463.t1.exon3;Parent=MS.gene26463.t1 |
| chr4.1 | CDS | 23912618 | 23912762 | 23912618 | ID=cds.MS.gene26463.t1;Parent=MS.gene26463.t1 |
| chr4.1 | exon | 23912999 | 23913130 | 23912999 | ID=MS.gene26463.t1.exon4;Parent=MS.gene26463.t1 |
| chr4.1 | CDS | 23912999 | 23913130 | 23912999 | ID=cds.MS.gene26463.t1;Parent=MS.gene26463.t1 |
| chr4.1 | exon | 23913227 | 23913520 | 23913227 | ID=MS.gene26463.t1.exon5;Parent=MS.gene26463.t1 |
| chr4.1 | CDS | 23913227 | 23913520 | 23913227 | ID=cds.MS.gene26463.t1;Parent=MS.gene26463.t1 |
| Gene Sequence |
| Protein sequence |
