Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047856.t1 | Q40313.1 | 100 | 247 | 0 | 0 | 1 | 247 | 1 | 247 | 1.30E-138 | 502.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047856.t1 | Q40313 | 100.0 | 247 | 0 | 0 | 1 | 247 | 1 | 247 | 3.1e-141 | 502.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047856.t1 | G7JK14 | 99.6 | 247 | 1 | 0 | 1 | 247 | 1 | 247 | 3.5e-138 | 500.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene047856 | MS.gene049025 | PPI |
| MS.gene047856 | MS.gene28756 | PPI |
| MS.gene047856 | MS.gene75055 | PPI |
| MS.gene55886 | MS.gene047856 | PPI |
| MS.gene030303 | MS.gene047856 | PPI |
| MS.gene047856 | MS.gene20157 | PPI |
| MS.gene047856 | MS.gene074442 | PPI |
| MS.gene047856 | MS.gene25100 | PPI |
| MS.gene028389 | MS.gene047856 | PPI |
| MS.gene047856 | MS.gene35069 | PPI |
| MS.gene047856 | MS.gene051092 | PPI |
| MS.gene66349 | MS.gene047856 | PPI |
| MS.gene047856 | MS.gene06173 | PPI |
| MS.gene064029 | MS.gene047856 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047856.t1 | MTR_4g085590 | 99.595 | 247 | 1 | 0 | 1 | 247 | 1 | 247 | 0.0 | 509 |
| MS.gene047856.t1 | MTR_4g094815 | 68.980 | 245 | 76 | 0 | 3 | 247 | 4 | 248 | 1.98e-130 | 369 |
| MS.gene047856.t1 | MTR_4g094925 | 64.228 | 246 | 84 | 1 | 1 | 246 | 1 | 242 | 7.95e-121 | 344 |
| MS.gene047856.t1 | MTR_4g094898 | 67.347 | 245 | 80 | 0 | 3 | 247 | 4 | 248 | 1.97e-119 | 341 |
| MS.gene047856.t1 | MTR_4g094812 | 68.293 | 246 | 77 | 1 | 1 | 246 | 1 | 245 | 6.03e-118 | 337 |
| MS.gene047856.t1 | MTR_4g094925 | 67.914 | 187 | 60 | 0 | 60 | 246 | 25 | 211 | 8.71e-98 | 285 |
| MS.gene047856.t1 | MTR_8g021225 | 57.965 | 226 | 95 | 0 | 20 | 245 | 8 | 233 | 3.06e-93 | 274 |
| MS.gene047856.t1 | MTR_4g094898 | 70.053 | 187 | 56 | 0 | 61 | 247 | 1 | 187 | 1.37e-92 | 270 |
| MS.gene047856.t1 | MTR_8g101900 | 58.036 | 224 | 93 | 1 | 23 | 246 | 12 | 234 | 4.75e-87 | 258 |
| MS.gene047856.t1 | MTR_6g091680 | 55.357 | 224 | 99 | 1 | 23 | 246 | 15 | 237 | 6.39e-84 | 250 |
| MS.gene047856.t1 | MTR_4g094368 | 52.212 | 226 | 105 | 2 | 21 | 244 | 3 | 227 | 1.92e-79 | 239 |
| MS.gene047856.t1 | MTR_2g070410 | 38.991 | 218 | 121 | 4 | 29 | 245 | 91 | 297 | 5.09e-46 | 155 |
| MS.gene047856.t1 | MTR_2g070410 | 40.116 | 172 | 99 | 2 | 29 | 200 | 91 | 258 | 7.05e-37 | 131 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047856.t1 | AT4G34050 | 89.669 | 242 | 25 | 0 | 5 | 246 | 44 | 285 | 1.62e-168 | 466 |
| MS.gene047856.t1 | AT4G34050 | 89.669 | 242 | 25 | 0 | 5 | 246 | 17 | 258 | 1.75e-168 | 465 |
| MS.gene047856.t1 | AT4G26220 | 58.850 | 226 | 92 | 1 | 21 | 246 | 7 | 231 | 3.83e-97 | 284 |
| MS.gene047856.t1 | AT1G67980 | 54.936 | 233 | 99 | 3 | 16 | 246 | 3 | 231 | 5.27e-90 | 266 |
| MS.gene047856.t1 | AT1G67990 | 53.509 | 228 | 101 | 3 | 21 | 246 | 8 | 232 | 6.99e-84 | 250 |
| MS.gene047856.t1 | AT1G24735 | 53.540 | 226 | 101 | 3 | 23 | 246 | 16 | 239 | 4.00e-80 | 241 |
| MS.gene047856.t1 | AT4G34050 | 88.618 | 123 | 14 | 0 | 124 | 246 | 25 | 147 | 4.29e-80 | 237 |
| MS.gene047856.t1 | AT1G24735 | 54.301 | 186 | 83 | 2 | 61 | 246 | 11 | 194 | 3.22e-66 | 204 |
| MS.gene047856.t1 | AT1G24735 | 54.301 | 186 | 83 | 2 | 61 | 246 | 107 | 290 | 3.61e-65 | 204 |
| MS.gene047856.t1 | AT3G62000 | 40.351 | 228 | 125 | 5 | 19 | 245 | 60 | 277 | 4.55e-49 | 163 |
| MS.gene047856.t1 | AT1G67980 | 45.181 | 166 | 87 | 2 | 81 | 246 | 2 | 163 | 1.31e-47 | 155 |
| MS.gene047856.t1 | AT3G61990 | 42.396 | 217 | 112 | 5 | 29 | 245 | 86 | 289 | 1.32e-46 | 157 |
| MS.gene047856.t1 | AT3G62000 | 38.710 | 217 | 122 | 5 | 19 | 234 | 60 | 266 | 1.11e-39 | 140 |
Find 57 sgRNAs with CRISPR-Local
Find 90 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTAGCATTGATAAGTTTA+AGG | 0.154244 | 4.4:-26578557 | None:intergenic |
| CAAGATCAATTAACCTCTTA+TGG | 0.259629 | 4.4:-26579199 | None:intergenic |
| ATAAATACCTTTCCATCTTC+AGG | 0.276991 | 4.4:-26578639 | None:intergenic |
| GCTAAGAATACCATGGAAAT+TGG | 0.278001 | 4.4:+26578573 | MS.gene047856:CDS |
| TAACAAAGAAAATTACGAAT+TGG | 0.303369 | 4.4:+26578904 | MS.gene047856:CDS |
| GATCAAAAGCAAACTGAATC+TGG | 0.306656 | 4.4:+26578121 | MS.gene047856:CDS |
| TTCATAGCTTCATGTTCTCT+TGG | 0.316977 | 4.4:-26578308 | None:intergenic |
| GTTAATTGATCTTGTTAAAG+TGG | 0.350946 | 4.4:+26579208 | MS.gene047856:CDS |
| TCGGGTACGACAACACCTTA+TGG | 0.351338 | 4.4:+26579240 | MS.gene047856:CDS |
| TACTTCCTCAATGGAGCATC+AGG | 0.355841 | 4.4:-26579284 | None:intergenic |
| TTTGGAGCTTAACAAGGCTT+TGG | 0.370464 | 4.4:+26579331 | MS.gene047856:CDS |
| AACAAAGAAAATTACGAATT+GGG | 0.394736 | 4.4:+26578905 | MS.gene047856:CDS |
| AGCATACATATTTCAATCCT+AGG | 0.403073 | 4.4:-26579362 | None:intergenic |
| TCATAGCTTCATGTTCTCTT+GGG | 0.406275 | 4.4:-26578307 | None:intergenic |
| CTCCATTGAGGAAGTATGTT+AGG | 0.425117 | 4.4:+26579291 | MS.gene047856:CDS |
| TTGATCATTTCATCAAGAAC+TGG | 0.432518 | 4.4:-26578992 | None:intergenic |
| GCCCTAGCTATTCCTGAAGA+TGG | 0.453375 | 4.4:+26578627 | MS.gene047856:CDS |
| ATTACCTCAACTACCATAAG+AGG | 0.454646 | 4.4:+26579186 | MS.gene047856:CDS |
| CACAAAATTGATTTCAGAGA+AGG | 0.464239 | 4.4:+26578959 | MS.gene047856:CDS |
| GCTTAACAAGGCTTTGGCTG+TGG | 0.469408 | 4.4:+26579337 | MS.gene047856:CDS |
| TTAATTGATCTTGTTAAAGT+GGG | 0.488776 | 4.4:+26579209 | MS.gene047856:CDS |
| AGCTAGGGCAGTGGCAAGGA+GGG | 0.490733 | 4.4:-26578613 | None:intergenic |
| TCATCAAGAACTGGAAGAGC+TGG | 0.494231 | 4.4:-26578983 | None:intergenic |
| AGGCTTTGGCTGTGGACCCT+AGG | 0.500768 | 4.4:+26579345 | MS.gene047856:CDS |
| GTTAAAGTGGGAGGTGTGAT+CGG | 0.505319 | 4.4:+26579221 | MS.gene047856:CDS |
| TACCTAACATACTTCCTCAA+TGG | 0.510094 | 4.4:-26579293 | None:intergenic |
| TTAAAGTGGGAGGTGTGATC+GGG | 0.514152 | 4.4:+26579222 | MS.gene047856:CDS |
| TTCCATCTTCAGGAATAGCT+AGG | 0.514348 | 4.4:-26578629 | None:intergenic |
| TCTGGAAGACATCAAGAAGT+TGG | 0.517673 | 4.4:+26578139 | MS.gene047856:CDS |
| ATAGTGATTCCATCACCAAC+AGG | 0.521355 | 4.4:-26579386 | None:intergenic |
| TACGACAACACCTTATGGAA+TGG | 0.525057 | 4.4:+26579245 | MS.gene047856:CDS |
| TTAACCTCTTATGGTAGTTG+AGG | 0.538006 | 4.4:-26579190 | None:intergenic |
| ATGACAACCTCTGCAGATGA+AGG | 0.539968 | 4.4:+26578516 | MS.gene047856:CDS |
| ATGTTCTCTTGGGAAGACAC+TGG | 0.546160 | 4.4:-26578297 | None:intergenic |
| ACAAAGTGATGCTCTTTACC+AGG | 0.549706 | 4.4:+26578177 | MS.gene047856:CDS |
| AACCACAGATCCATTCCATA+AGG | 0.552846 | 4.4:-26579255 | None:intergenic |
| ATTGATCTTGTTAAAGTGGG+AGG | 0.560018 | 4.4:+26579212 | MS.gene047856:CDS |
| AGCTATTCCTGAAGATGGAA+AGG | 0.565418 | 4.4:+26578632 | MS.gene047856:CDS |
| ATGGAAATTGGTGTCTACAC+TGG | 0.567113 | 4.4:+26578585 | MS.gene047856:CDS |
| TCCATCTTCAGGAATAGCTA+GGG | 0.570121 | 4.4:-26578628 | None:intergenic |
| GAAATATGTATGCTTCCTGT+TGG | 0.574969 | 4.4:+26579371 | MS.gene047856:CDS |
| ACTTCCTCAATGGAGCATCA+GGG | 0.579332 | 4.4:-26579283 | None:intergenic |
| TGTATGCTTCCTGTTGGTGA+TGG | 0.580796 | 4.4:+26579377 | MS.gene047856:CDS |
| TAGCTAGGGCAGTGGCAAGG+AGG | 0.584857 | 4.4:-26578614 | None:intergenic |
| CTTCCTCAATGGAGCATCAG+GGG | 0.588342 | 4.4:-26579282 | None:intergenic |
| GCATACATATTTCAATCCTA+GGG | 0.589825 | 4.4:-26579361 | None:intergenic |
| TTCAGGAATAGCTAGGGCAG+TGG | 0.598779 | 4.4:-26578622 | None:intergenic |
| AAATTGTCCTTCATCTGCAG+AGG | 0.606260 | 4.4:-26578523 | None:intergenic |
| AGTGTAGACACCAATTTCCA+TGG | 0.614822 | 4.4:-26578583 | None:intergenic |
| TATCAATGCTAAGAATACCA+TGG | 0.621099 | 4.4:+26578566 | MS.gene047856:CDS |
| AAATCAATTACTTGATCCGA+CGG | 0.629110 | 4.4:-26579412 | None:intergenic |
| CACCTTATGGAATGGATCTG+TGG | 0.632572 | 4.4:+26579253 | MS.gene047856:CDS |
| GAATAGCTAGGGCAGTGGCA+AGG | 0.635775 | 4.4:-26578617 | None:intergenic |
| ATGGAATCACTATCTGCCGT+CGG | 0.638222 | 4.4:+26579396 | MS.gene047856:CDS |
| TTCCTCAATGGAGCATCAGG+GGG | 0.651997 | 4.4:-26579281 | None:intergenic |
| AGGTCACAGCAAAACACCCA+TGG | 0.652192 | 4.4:+26578342 | MS.gene047856:CDS |
| AGCTATGAAAGAGTTGAGAG+AGG | 0.657735 | 4.4:+26578322 | MS.gene047856:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATCTAATTGATTATATAA+TGG | - | chr4.4:26578702-26578721 | None:intergenic | 10.0% |
| !! | ATGCTAAAAAATTTAAATTA+TGG | - | chr4.4:26578225-26578244 | None:intergenic | 10.0% |
| !! | TGCTAAAAAATTTAAATTAT+GGG | - | chr4.4:26578224-26578243 | None:intergenic | 10.0% |
| !!! | ATTTTTTAGCATGAATTTTT+TGG | + | chr4.4:26578233-26578252 | MS.gene047856:intron | 15.0% |
| !! | AACAAAGAAAATTACGAATT+GGG | + | chr4.4:26578905-26578924 | MS.gene047856:CDS | 20.0% |
| !! | GAATTAAGAATTATTACCAT+GGG | - | chr4.4:26578361-26578380 | None:intergenic | 20.0% |
| !! | TAACAAAGAAAATTACGAAT+TGG | + | chr4.4:26578904-26578923 | MS.gene047856:CDS | 20.0% |
| !! | TGAATTAAGAATTATTACCA+TGG | - | chr4.4:26578362-26578381 | None:intergenic | 20.0% |
| !! | TTAATTGATCTTGTTAAAGT+GGG | + | chr4.4:26579209-26579228 | MS.gene047856:CDS | 20.0% |
| !!! | ACTAATTTGATTTTTTGTGT+GGG | + | chr4.4:26579094-26579113 | MS.gene047856:intron | 20.0% |
| !!! | ATGAAAAAAGTTCTAACAAA+AGG | - | chr4.4:26578754-26578773 | None:intergenic | 20.0% |
| !!! | ATGTATTTTTTTTCTTCAAG+TGG | - | chr4.4:26579050-26579069 | None:intergenic | 20.0% |
| !!! | GTGGGATATTAATTTTTTTT+AGG | + | chr4.4:26579112-26579131 | MS.gene047856:intron | 20.0% |
| !!! | TGTATTTTTTTTCTTCAAGT+GGG | - | chr4.4:26579049-26579068 | None:intergenic | 20.0% |
| !!! | TTTTTTTAGGAAAAGAATCA+TGG | + | chr4.4:26579125-26579144 | MS.gene047856:intron | 20.0% |
| ! | ATTGAACAAAACAACAAAAC+AGG | + | chr4.4:26578487-26578506 | MS.gene047856:intron | 25.0% |
| ! | GAGATATCATGTAAAATCAA+GGG | + | chr4.4:26578828-26578847 | MS.gene047856:intron | 25.0% |
| ! | GTTAATTGATCTTGTTAAAG+TGG | + | chr4.4:26579208-26579227 | MS.gene047856:CDS | 25.0% |
| ! | TCAATGGAACCTAATTAATA+AGG | - | chr4.4:26578421-26578440 | None:intergenic | 25.0% |
| ! | TCCAATTGATATAAGTTCAA+TGG | - | chr4.4:26578437-26578456 | None:intergenic | 25.0% |
| ! | TCCATTGAACTTATATCAAT+TGG | + | chr4.4:26578433-26578452 | MS.gene047856:intron | 25.0% |
| ! | TGAGATATCATGTAAAATCA+AGG | + | chr4.4:26578827-26578846 | MS.gene047856:intron | 25.0% |
| !! | CTTTTGTGTTTAGTAAAGTA+AGG | + | chr4.4:26578775-26578794 | MS.gene047856:intron | 25.0% |
| !! | GGTCTAATACTTAATTTTTC+TGG | + | chr4.4:26578849-26578868 | MS.gene047856:intron | 25.0% |
| !! | GTTGTAATTGTTACAGATTT+TGG | + | chr4.4:26578871-26578890 | MS.gene047856:intron | 25.0% |
| !!! | GACTAATTTGATTTTTTGTG+TGG | + | chr4.4:26579093-26579112 | MS.gene047856:intron | 25.0% |
| !!! | GTACTATAGAGATTTTGTTT+TGG | + | chr4.4:26579313-26579332 | MS.gene047856:CDS | 25.0% |
| !!! | TCTTAGCATTGATAAGTTTA+AGG | - | chr4.4:26578560-26578579 | None:intergenic | 25.0% |
| AAAATGAAATTGTGTGTACC+TGG | - | chr4.4:26578198-26578217 | None:intergenic | 30.0% | |
| AGCATACATATTTCAATCCT+AGG | - | chr4.4:26579365-26579384 | None:intergenic | 30.0% | |
| ATAAATACCTTTCCATCTTC+AGG | - | chr4.4:26578642-26578661 | None:intergenic | 30.0% | |
| CAAGATCAATTAACCTCTTA+TGG | - | chr4.4:26579202-26579221 | None:intergenic | 30.0% | |
| CTACCTGTAATTAAAAAAGC+TGG | + | chr4.4:26578929-26578948 | MS.gene047856:CDS | 30.0% | |
| CTCGATCTACCTTATTAATT+AGG | + | chr4.4:26578409-26578428 | MS.gene047856:intron | 30.0% | |
| GCATACATATTTCAATCCTA+GGG | - | chr4.4:26579364-26579383 | None:intergenic | 30.0% | |
| GTGTTTAGTAAAGTAAGGTT+AGG | + | chr4.4:26578780-26578799 | MS.gene047856:intron | 30.0% | |
| TATCAATGCTAAGAATACCA+TGG | + | chr4.4:26578566-26578585 | MS.gene047856:CDS | 30.0% | |
| TTGATCATTTCATCAAGAAC+TGG | - | chr4.4:26578995-26579014 | None:intergenic | 30.0% | |
| ! | CACAAAATTGATTTCAGAGA+AGG | + | chr4.4:26578959-26578978 | MS.gene047856:CDS | 30.0% |
| !! | TAGCTACGATTTCATTTTTG+TGG | + | chr4.4:26579148-26579167 | MS.gene047856:CDS | 30.0% |
| !!! | ACACCAGCTTTTTTAATTAC+AGG | - | chr4.4:26578935-26578954 | None:intergenic | 30.0% |
| !!! | ATTGTTACAGATTTTGGCTA+TGG | + | chr4.4:26578877-26578896 | MS.gene047856:intron | 30.0% |
| !!! | TTTTGTTTTGGAGCTTAACA+AGG | + | chr4.4:26579325-26579344 | MS.gene047856:CDS | 30.0% |
| ATTACCTCAACTACCATAAG+AGG | + | chr4.4:26579186-26579205 | MS.gene047856:CDS | 35.0% | |
| ATTGATCTTGTTAAAGTGGG+AGG | + | chr4.4:26579212-26579231 | MS.gene047856:CDS | 35.0% | |
| GAAATATGTATGCTTCCTGT+TGG | + | chr4.4:26579371-26579390 | MS.gene047856:CDS | 35.0% | |
| GATCAAAAGCAAACTGAATC+TGG | + | chr4.4:26578121-26578140 | MS.gene047856:CDS | 35.0% | |
| GCTAAGAATACCATGGAAAT+TGG | + | chr4.4:26578573-26578592 | MS.gene047856:CDS | 35.0% | |
| TACCTAACATACTTCCTCAA+TGG | - | chr4.4:26579296-26579315 | None:intergenic | 35.0% | |
| TCATAGCTTCATGTTCTCTT+GGG | - | chr4.4:26578310-26578329 | None:intergenic | 35.0% | |
| TTAACCTCTTATGGTAGTTG+AGG | - | chr4.4:26579193-26579212 | None:intergenic | 35.0% | |
| TTCATAGCTTCATGTTCTCT+TGG | - | chr4.4:26578311-26578330 | None:intergenic | 35.0% | |
| !! | AGTTTGCTTTTGATCTTCGT+TGG | - | chr4.4:26578116-26578135 | None:intergenic | 35.0% |
| AAATTGTCCTTCATCTGCAG+AGG | - | chr4.4:26578526-26578545 | None:intergenic | 40.0% | |
| AACCACAGATCCATTCCATA+AGG | - | chr4.4:26579258-26579277 | None:intergenic | 40.0% | |
| ACAAAGTGATGCTCTTTACC+AGG | + | chr4.4:26578177-26578196 | MS.gene047856:CDS | 40.0% | |
| AGCTATGAAAGAGTTGAGAG+AGG | + | chr4.4:26578322-26578341 | MS.gene047856:CDS | 40.0% | |
| AGCTATTCCTGAAGATGGAA+AGG | + | chr4.4:26578632-26578651 | MS.gene047856:CDS | 40.0% | |
| AGTGGGACATAGAAAAAGAC+TGG | - | chr4.4:26579032-26579051 | None:intergenic | 40.0% | |
| AGTGTAGACACCAATTTCCA+TGG | - | chr4.4:26578586-26578605 | None:intergenic | 40.0% | |
| ATAGTGATTCCATCACCAAC+AGG | - | chr4.4:26579389-26579408 | None:intergenic | 40.0% | |
| TACGACAACACCTTATGGAA+TGG | + | chr4.4:26579245-26579264 | MS.gene047856:CDS | 40.0% | |
| TCCATCTTCAGGAATAGCTA+GGG | - | chr4.4:26578631-26578650 | None:intergenic | 40.0% | |
| TCTGGAAGACATCAAGAAGT+TGG | + | chr4.4:26578139-26578158 | MS.gene047856:CDS | 40.0% | |
| TTCCATCTTCAGGAATAGCT+AGG | - | chr4.4:26578632-26578651 | None:intergenic | 40.0% | |
| ! | ATGGAAATTGGTGTCTACAC+TGG | + | chr4.4:26578585-26578604 | MS.gene047856:CDS | 40.0% |
| ! | CTCCATTGAGGAAGTATGTT+AGG | + | chr4.4:26579291-26579310 | MS.gene047856:CDS | 40.0% |
| ! | TTTGGAGCTTAACAAGGCTT+TGG | + | chr4.4:26579331-26579350 | MS.gene047856:CDS | 40.0% |
| ATGACAACCTCTGCAGATGA+AGG | + | chr4.4:26578516-26578535 | MS.gene047856:CDS | 45.0% | |
| ATGGAATCACTATCTGCCGT+CGG | + | chr4.4:26579396-26579415 | MS.gene047856:CDS | 45.0% | |
| ATGTTCTCTTGGGAAGACAC+TGG | - | chr4.4:26578300-26578319 | None:intergenic | 45.0% | |
| CACCTTATGGAATGGATCTG+TGG | + | chr4.4:26579253-26579272 | MS.gene047856:CDS | 45.0% | |
| TCATCAAGAACTGGAAGAGC+TGG | - | chr4.4:26578986-26579005 | None:intergenic | 45.0% | |
| ! | ACTTCCTCAATGGAGCATCA+GGG | - | chr4.4:26579286-26579305 | None:intergenic | 45.0% |
| ! | GTTAAAGTGGGAGGTGTGAT+CGG | + | chr4.4:26579221-26579240 | MS.gene047856:CDS | 45.0% |
| ! | TACTTCCTCAATGGAGCATC+AGG | - | chr4.4:26579287-26579306 | None:intergenic | 45.0% |
| ! | TGTATGCTTCCTGTTGGTGA+TGG | + | chr4.4:26579377-26579396 | MS.gene047856:CDS | 45.0% |
| ! | TTAAAGTGGGAGGTGTGATC+GGG | + | chr4.4:26579222-26579241 | MS.gene047856:CDS | 45.0% |
| AGGTCACAGCAAAACACCCA+TGG | + | chr4.4:26578342-26578361 | MS.gene047856:CDS | 50.0% | |
| GCCCTAGCTATTCCTGAAGA+TGG | + | chr4.4:26578627-26578646 | MS.gene047856:CDS | 50.0% | |
| TCGGGTACGACAACACCTTA+TGG | + | chr4.4:26579240-26579259 | MS.gene047856:CDS | 50.0% | |
| TTCAGGAATAGCTAGGGCAG+TGG | - | chr4.4:26578625-26578644 | None:intergenic | 50.0% | |
| ! | CTTCCTCAATGGAGCATCAG+GGG | - | chr4.4:26579285-26579304 | None:intergenic | 50.0% |
| ! | GCTTAACAAGGCTTTGGCTG+TGG | + | chr4.4:26579337-26579356 | MS.gene047856:CDS | 50.0% |
| ! | TTCCTCAATGGAGCATCAGG+GGG | - | chr4.4:26579284-26579303 | None:intergenic | 50.0% |
| GAATAGCTAGGGCAGTGGCA+AGG | - | chr4.4:26578620-26578639 | None:intergenic | 55.0% | |
| AGCTAGGGCAGTGGCAAGGA+GGG | - | chr4.4:26578616-26578635 | None:intergenic | 60.0% | |
| CACCCCCTGATGCTCCATTG+AGG | + | chr4.4:26579279-26579298 | MS.gene047856:CDS | 60.0% | |
| TAGCTAGGGCAGTGGCAAGG+AGG | - | chr4.4:26578617-26578636 | None:intergenic | 60.0% | |
| ! | AGGCTTTGGCTGTGGACCCT+AGG | + | chr4.4:26579345-26579364 | MS.gene047856:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 26578106 | 26579427 | 26578106 | ID=MS.gene047856 |
| chr4.4 | mRNA | 26578106 | 26579427 | 26578106 | ID=MS.gene047856.t1;Parent=MS.gene047856 |
| chr4.4 | exon | 26578106 | 26578198 | 26578106 | ID=MS.gene047856.t1.exon1;Parent=MS.gene047856.t1 |
| chr4.4 | CDS | 26578106 | 26578198 | 26578106 | ID=cds.MS.gene047856.t1;Parent=MS.gene047856.t1 |
| chr4.4 | exon | 26578284 | 26578363 | 26578284 | ID=MS.gene047856.t1.exon2;Parent=MS.gene047856.t1 |
| chr4.4 | CDS | 26578284 | 26578363 | 26578284 | ID=cds.MS.gene047856.t1;Parent=MS.gene047856.t1 |
| chr4.4 | exon | 26578509 | 26578653 | 26578509 | ID=MS.gene047856.t1.exon3;Parent=MS.gene047856.t1 |
| chr4.4 | CDS | 26578509 | 26578653 | 26578509 | ID=cds.MS.gene047856.t1;Parent=MS.gene047856.t1 |
| chr4.4 | exon | 26578887 | 26579018 | 26578887 | ID=MS.gene047856.t1.exon4;Parent=MS.gene047856.t1 |
| chr4.4 | CDS | 26578887 | 26579018 | 26578887 | ID=cds.MS.gene047856.t1;Parent=MS.gene047856.t1 |
| chr4.4 | exon | 26579134 | 26579427 | 26579134 | ID=MS.gene047856.t1.exon5;Parent=MS.gene047856.t1 |
| chr4.4 | CDS | 26579134 | 26579427 | 26579134 | ID=cds.MS.gene047856.t1;Parent=MS.gene047856.t1 |
| Gene Sequence |
| Protein sequence |
