Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28756.t1 | XP_013457252.1 | 97.4 | 229 | 6 | 0 | 1 | 229 | 1 | 229 | 8.90E-118 | 433 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28756.t1 | C7AE94 | 66.7 | 228 | 75 | 1 | 3 | 229 | 7 | 234 | 9.2e-79 | 294.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28756.t1 | A0A072UQF3 | 97.4 | 229 | 6 | 0 | 1 | 229 | 1 | 229 | 6.4e-118 | 433.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050559 | MS.gene28756 | 0.813647 | 2.30E-51 | -1.69E-46 |
| MS.gene050561 | MS.gene28756 | 0.815835 | 7.54E-52 | -1.69E-46 |
| MS.gene051744 | MS.gene28756 | 0.8025 | 5.45E-49 | -1.69E-46 |
| MS.gene052519 | MS.gene28756 | 0.800358 | 1.50E-48 | -1.69E-46 |
| MS.gene055818 | MS.gene28756 | 0.807263 | 5.50E-50 | -1.69E-46 |
| MS.gene058008 | MS.gene28756 | 0.840501 | 8.37E-58 | -1.69E-46 |
| MS.gene058009 | MS.gene28756 | 0.838381 | 2.97E-57 | -1.69E-46 |
| MS.gene058635 | MS.gene28756 | 0.850485 | 1.65E-60 | -1.69E-46 |
| MS.gene060840 | MS.gene28756 | 0.80316 | 3.98E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene047856 | MS.gene28756 | PPI |
| MS.gene35069 | MS.gene28756 | PPI |
| MS.gene059423 | MS.gene28756 | PPI |
| MS.gene28756 | MS.gene049025 | PPI |
| MS.gene66349 | MS.gene28756 | PPI |
| MS.gene28756 | MS.gene75055 | PPI |
| MS.gene064029 | MS.gene28756 | PPI |
| MS.gene55886 | MS.gene28756 | PPI |
| MS.gene28756 | MS.gene074442 | PPI |
| MS.gene28756 | MS.gene053539 | PPI |
| MS.gene030303 | MS.gene28756 | PPI |
| MS.gene28756 | MS.gene35069 | PPI |
| MS.gene28756 | MS.gene051092 | PPI |
| MS.gene28756 | MS.gene25100 | PPI |
| MS.gene06173 | MS.gene28756 | PPI |
| MS.gene20157 | MS.gene28756 | PPI |
| MS.gene028389 | MS.gene28756 | PPI |
| MS.gene053535 | MS.gene28756 | PPI |
| MS.gene26463 | MS.gene28756 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28756.t1 | MTR_4g094368 | 97.380 | 229 | 6 | 0 | 1 | 229 | 1 | 229 | 4.12e-164 | 452 |
| MS.gene28756.t1 | MTR_4g094925 | 53.947 | 228 | 98 | 3 | 3 | 227 | 17 | 240 | 1.88e-81 | 243 |
| MS.gene28756.t1 | MTR_4g085590 | 51.770 | 226 | 106 | 2 | 3 | 227 | 21 | 244 | 6.53e-80 | 239 |
| MS.gene28756.t1 | MTR_8g021225 | 54.018 | 224 | 100 | 2 | 5 | 227 | 11 | 232 | 1.52e-79 | 238 |
| MS.gene28756.t1 | MTR_4g094815 | 52.212 | 226 | 105 | 3 | 3 | 227 | 22 | 245 | 2.07e-79 | 238 |
| MS.gene28756.t1 | MTR_4g094812 | 54.867 | 226 | 99 | 2 | 3 | 227 | 20 | 243 | 3.58e-78 | 235 |
| MS.gene28756.t1 | MTR_4g094898 | 55.310 | 226 | 98 | 3 | 3 | 227 | 22 | 245 | 5.41e-78 | 235 |
| MS.gene28756.t1 | MTR_4g094925 | 54.595 | 185 | 83 | 1 | 44 | 227 | 25 | 209 | 2.98e-69 | 211 |
| MS.gene28756.t1 | MTR_8g101900 | 52.232 | 224 | 103 | 3 | 5 | 227 | 12 | 232 | 8.70e-69 | 211 |
| MS.gene28756.t1 | MTR_4g094898 | 57.609 | 184 | 77 | 1 | 45 | 227 | 1 | 184 | 1.24e-66 | 204 |
| MS.gene28756.t1 | MTR_6g091680 | 50.446 | 224 | 107 | 4 | 5 | 227 | 15 | 235 | 1.45e-65 | 203 |
| MS.gene28756.t1 | MTR_2g070410 | 39.091 | 220 | 123 | 4 | 8 | 227 | 88 | 296 | 7.11e-45 | 152 |
| MS.gene28756.t1 | MTR_2g070410 | 40.805 | 174 | 98 | 2 | 8 | 181 | 88 | 256 | 9.04e-37 | 130 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28756.t1 | AT1G67980 | 61.233 | 227 | 85 | 2 | 3 | 229 | 8 | 231 | 4.44e-95 | 278 |
| MS.gene28756.t1 | AT1G24735 | 60.000 | 225 | 89 | 1 | 5 | 229 | 16 | 239 | 5.31e-93 | 273 |
| MS.gene28756.t1 | AT1G67990 | 56.388 | 227 | 97 | 2 | 3 | 229 | 8 | 232 | 6.74e-89 | 262 |
| MS.gene28756.t1 | AT1G24735 | 48.913 | 276 | 89 | 2 | 5 | 229 | 16 | 290 | 1.01e-82 | 248 |
| MS.gene28756.t1 | AT4G34050 | 50.442 | 226 | 109 | 2 | 3 | 227 | 33 | 256 | 7.63e-78 | 235 |
| MS.gene28756.t1 | AT4G34050 | 50.442 | 226 | 109 | 2 | 3 | 227 | 60 | 283 | 3.75e-77 | 234 |
| MS.gene28756.t1 | AT4G26220 | 50.655 | 229 | 109 | 4 | 2 | 229 | 6 | 231 | 2.92e-74 | 225 |
| MS.gene28756.t1 | AT1G24735 | 58.730 | 189 | 77 | 1 | 41 | 229 | 7 | 194 | 5.03e-73 | 220 |
| MS.gene28756.t1 | AT3G61990 | 40.271 | 221 | 116 | 4 | 8 | 227 | 83 | 288 | 8.87e-52 | 169 |
| MS.gene28756.t1 | AT1G67980 | 50.909 | 165 | 78 | 2 | 65 | 229 | 2 | 163 | 1.82e-47 | 154 |
| MS.gene28756.t1 | AT3G62000 | 38.009 | 221 | 124 | 5 | 8 | 227 | 68 | 276 | 1.17e-44 | 150 |
| MS.gene28756.t1 | AT3G62000 | 36.792 | 212 | 121 | 5 | 8 | 218 | 68 | 267 | 1.95e-37 | 134 |
| MS.gene28756.t1 | AT4G34050 | 43.802 | 121 | 67 | 1 | 108 | 227 | 25 | 145 | 7.63e-31 | 111 |
Find 38 sgRNAs with CRISPR-Local
Find 100 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAACAACAATTCAGAAGTA+TGG | 0.226874 | 4.3:+19828281 | MS.gene28756:CDS |
| TTCAATTGTTCGTGCTCTTT+TGG | 0.241069 | 4.3:-19828248 | None:intergenic |
| TTTCATCACTTTCAGGTAAT+AGG | 0.252449 | 4.3:+19828665 | MS.gene28756:intron |
| GAATCAACAATCCTTTCTAT+TGG | 0.264328 | 4.3:+19829869 | MS.gene28756:CDS |
| AATCAACAATCCTTTCTATT+GGG | 0.280127 | 4.3:+19829870 | MS.gene28756:CDS |
| TTGCATATTGTAACACATTA+TGG | 0.303504 | 4.3:+19829738 | MS.gene28756:CDS |
| ATCCACAGTGATGCATTATC+AGG | 0.304543 | 4.3:+19828767 | MS.gene28756:CDS |
| TCACGAGCTGTTGTTGAAAT+TGG | 0.308284 | 4.3:+19829697 | MS.gene28756:CDS |
| CAAAACTCCATCACTTCTTC+AGG | 0.343679 | 4.3:+19828098 | MS.gene28756:CDS |
| TCAGGTAATAGGAATTGATA+TGG | 0.352155 | 4.3:+19828676 | MS.gene28756:intron |
| ATCATTTGATTATGCATTTG+TGG | 0.388543 | 4.3:+19829646 | MS.gene28756:CDS |
| AGGAAATGGAAGATACAATA+AGG | 0.400536 | 4.3:+19829789 | MS.gene28756:CDS |
| TTTGAGGATGTTCTTGGCCA+TGG | 0.424703 | 4.3:-19828079 | None:intergenic |
| AACTTCTGCCTTCTGAATGA+AGG | 0.443554 | 4.3:-19828726 | None:intergenic |
| TGCTCTTCCTTCTGATGGCA+AGG | 0.457076 | 4.3:+19828576 | MS.gene28756:CDS |
| GCTCTTGCTCTTCCTTCTGA+TGG | 0.470052 | 4.3:+19828571 | MS.gene28756:CDS |
| TTAGAAATTGGAGTCTTCAC+TGG | 0.475666 | 4.3:+19828529 | MS.gene28756:CDS |
| GAGTATAATGAATGTGCCTT+TGG | 0.477530 | 4.3:+19828453 | MS.gene28756:CDS |
| TATTGTAACACATTATGGTC+TGG | 0.485641 | 4.3:+19829743 | MS.gene28756:CDS |
| GTTGTTGAAATTGGTGAAGA+AGG | 0.485943 | 4.3:+19829706 | MS.gene28756:CDS |
| CATGTCTGAGGATGAGGAAA+TGG | 0.492122 | 4.3:+19829775 | MS.gene28756:CDS |
| TGTAGCCATGTCTGAGGATG+AGG | 0.495939 | 4.3:+19829769 | MS.gene28756:CDS |
| AAACAACAATTCAGAAGTAT+GGG | 0.513999 | 4.3:+19828282 | MS.gene28756:CDS |
| GATAAAGAAGCATATGAGAC+AGG | 0.521908 | 4.3:+19828698 | MS.gene28756:CDS |
| ATTATTACCTGAAGAAGTGA+TGG | 0.524021 | 4.3:-19828105 | None:intergenic |
| ATCAACAATCCTTTCTATTG+GGG | 0.546246 | 4.3:+19829871 | MS.gene28756:CDS |
| TTGAAATTGGTGAAGAAGGG+TGG | 0.553175 | 4.3:+19829710 | MS.gene28756:CDS |
| AATGATACCTTGCCATCAGA+AGG | 0.554204 | 4.3:-19828583 | None:intergenic |
| ACTTCTGCCTTCTGAATGAA+GGG | 0.557570 | 4.3:-19828725 | None:intergenic |
| ATGAATTGTGCTTCATCCAA+AGG | 0.563739 | 4.3:-19828469 | None:intergenic |
| TTACACCGTCCCCAATAGAA+AGG | 0.565363 | 4.3:-19829880 | None:intergenic |
| TTGTTGAAATTGGTGAAGAA+GGG | 0.567331 | 4.3:+19829707 | MS.gene28756:CDS |
| AGGATTGCCCTTCATTCAGA+AGG | 0.568251 | 4.3:+19828718 | MS.gene28756:CDS |
| CATTTCCTCATCCTCAGACA+TGG | 0.568293 | 4.3:-19829774 | None:intergenic |
| TGCATTTGTGGATGCTGACA+AGG | 0.577388 | 4.3:+19829658 | MS.gene28756:CDS |
| ACAATCCTTTCTATTGGGGA+CGG | 0.594828 | 4.3:+19829875 | MS.gene28756:CDS |
| TGGTTCTGTAGCCATGTCTG+AGG | 0.624517 | 4.3:+19829763 | MS.gene28756:CDS |
| TGCCTGATAATGCATCACTG+TGG | 0.800721 | 4.3:-19828769 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAGATAATCATTCAATT+TGG | - | chr4.3:19828929-19828948 | None:intergenic | 15.0% |
| !! | TTCAATTTCTTAAGTATATT+TGG | + | chr4.3:19829534-19829553 | MS.gene28756:intron | 15.0% |
| !!! | ACATTGATTTTAATATTTGT+TGG | + | chr4.3:19828415-19828434 | MS.gene28756:intron | 15.0% |
| !!! | CATTGATTTTAATATTTGTT+GGG | + | chr4.3:19828416-19828435 | MS.gene28756:intron | 15.0% |
| !!! | CTTATAATAATAGTTCTTTT+CGG | + | chr4.3:19828982-19829001 | MS.gene28756:intron | 15.0% |
| !! | ATAATCATTCAATTTGGATT+GGG | - | chr4.3:19828923-19828942 | None:intergenic | 20.0% |
| !! | TAATTAATATCTCTAGTAGA+AGG | - | chr4.3:19828173-19828192 | None:intergenic | 20.0% |
| !! | TTAAGAAAACTCAATTAATC+TGG | - | chr4.3:19828149-19828168 | None:intergenic | 20.0% |
| ! | AATCAACAATCCTTTCTATT+GGG | + | chr4.3:19829870-19829889 | MS.gene28756:CDS | 25.0% |
| ! | ATCATTTGATTATGCATTTG+TGG | + | chr4.3:19829646-19829665 | MS.gene28756:CDS | 25.0% |
| ! | GAATAAATTTCATCACTTTC+AGG | + | chr4.3:19828658-19828677 | MS.gene28756:intron | 25.0% |
| ! | GATAATCATTCAATTTGGAT+TGG | - | chr4.3:19828924-19828943 | None:intergenic | 25.0% |
| ! | GCGAAAAAAACATTAGAAAT+TGG | + | chr4.3:19828517-19828536 | MS.gene28756:CDS | 25.0% |
| ! | GTTTCGAAAAGAAAACTTAT+GGG | + | chr4.3:19829506-19829525 | MS.gene28756:intron | 25.0% |
| ! | TCGTTTAGACAATGAATTAA+AGG | + | chr4.3:19829585-19829604 | MS.gene28756:intron | 25.0% |
| ! | TGTTTCGAAAAGAAAACTTA+TGG | + | chr4.3:19829505-19829524 | MS.gene28756:intron | 25.0% |
| ! | TTGCATATTGTAACACATTA+TGG | + | chr4.3:19829738-19829757 | MS.gene28756:CDS | 25.0% |
| !! | AAACAACAATTCAGAAGTAT+GGG | + | chr4.3:19828282-19828301 | MS.gene28756:CDS | 25.0% |
| !! | AACTTGTTTCAAGAATATAC+TGG | - | chr4.3:19828223-19828242 | None:intergenic | 25.0% |
| !! | ATAATAATAGTTCTTTTCGG+TGG | + | chr4.3:19828985-19829004 | MS.gene28756:intron | 25.0% |
| !! | TCAATTGCAACTTTTCTTTT+TGG | - | chr4.3:19829815-19829834 | None:intergenic | 25.0% |
| !!! | ATTCATTTTCTGCTTTGTTA+GGG | + | chr4.3:19829076-19829095 | MS.gene28756:intron | 25.0% |
| !!! | ATTTTAATATTTGTTGGGTG+TGG | + | chr4.3:19828421-19828440 | MS.gene28756:intron | 25.0% |
| !!! | TATTCATTTTCTGCTTTGTT+AGG | + | chr4.3:19829075-19829094 | MS.gene28756:intron | 25.0% |
| !!! | TGTTTTAAATTGTATCATCG+TGG | + | chr4.3:19829259-19829278 | MS.gene28756:intron | 25.0% |
| AAAACAATTCCATGAATTGC+AGG | + | chr4.3:19829610-19829629 | MS.gene28756:intron | 30.0% | |
| AAACAATTCCATGAATTGCA+GGG | + | chr4.3:19829611-19829630 | MS.gene28756:intron | 30.0% | |
| AGGAAATGGAAGATACAATA+AGG | + | chr4.3:19829789-19829808 | MS.gene28756:CDS | 30.0% | |
| ATCAACAATCCTTTCTATTG+GGG | + | chr4.3:19829871-19829890 | MS.gene28756:CDS | 30.0% | |
| ATTATTACCTGAAGAAGTGA+TGG | - | chr4.3:19828108-19828127 | None:intergenic | 30.0% | |
| GAAACAACAATTCAGAAGTA+TGG | + | chr4.3:19828281-19828300 | MS.gene28756:CDS | 30.0% | |
| GAATCAACAATCCTTTCTAT+TGG | + | chr4.3:19829869-19829888 | MS.gene28756:CDS | 30.0% | |
| TATTGTAACACATTATGGTC+TGG | + | chr4.3:19829743-19829762 | MS.gene28756:CDS | 30.0% | |
| TCAGGTAATAGGAATTGATA+TGG | + | chr4.3:19828676-19828695 | MS.gene28756:intron | 30.0% | |
| TTGTTGAAATTGGTGAAGAA+GGG | + | chr4.3:19829707-19829726 | MS.gene28756:CDS | 30.0% | |
| ! | TTTCATCACTTTCAGGTAAT+AGG | + | chr4.3:19828665-19828684 | MS.gene28756:intron | 30.0% |
| !! | TTTTTACGTGTTACTAGTAC+TGG | + | chr4.3:19829184-19829203 | MS.gene28756:intron | 30.0% |
| AAACGAATTAGATGCTCTAG+AGG | - | chr4.3:19829571-19829590 | None:intergenic | 35.0% | |
| ATGAATTGTGCTTCATCCAA+AGG | - | chr4.3:19828472-19828491 | None:intergenic | 35.0% | |
| CAAACCTGAGAAATAGAAAC+CGG | - | chr4.3:19829148-19829167 | None:intergenic | 35.0% | |
| GAGTATAATGAATGTGCCTT+TGG | + | chr4.3:19828453-19828472 | MS.gene28756:CDS | 35.0% | |
| GTTGTTGAAATTGGTGAAGA+AGG | + | chr4.3:19829706-19829725 | MS.gene28756:CDS | 35.0% | |
| TAGCAATATCGTCTTTGTGT+CGG | + | chr4.3:19829296-19829315 | MS.gene28756:intron | 35.0% | |
| TATCATCCTTTATGTAGCAG+TGG | + | chr4.3:19829231-19829250 | MS.gene28756:intron | 35.0% | |
| TTAGAAATTGGAGTCTTCAC+TGG | + | chr4.3:19828529-19828548 | MS.gene28756:CDS | 35.0% | |
| ! | AATCAATAGCGAGGTATCAT+AGG | + | chr4.3:19829018-19829037 | MS.gene28756:intron | 35.0% |
| ! | ATAATAGTTCTTTTCGGTGG+AGG | + | chr4.3:19828988-19829007 | MS.gene28756:intron | 35.0% |
| ! | CTCAATTAATCTGGTTTCAG+TGG | - | chr4.3:19828140-19828159 | None:intergenic | 35.0% |
| ! | GATAAAGAAGCATATGAGAC+AGG | + | chr4.3:19828698-19828717 | MS.gene28756:CDS | 35.0% |
| ! | TAATAGTTCTTTTCGGTGGA+GGG | + | chr4.3:19828989-19829008 | MS.gene28756:intron | 35.0% |
| ! | TTCAATTGTTCGTGCTCTTT+TGG | - | chr4.3:19828251-19828270 | None:intergenic | 35.0% |
| ! | TTCTATTTCTCAGGTTTGGA+TGG | + | chr4.3:19829150-19829169 | MS.gene28756:intron | 35.0% |
| !! | ATCATCGTGGCTTTATTGTA+TGG | + | chr4.3:19829272-19829291 | MS.gene28756:intron | 35.0% |
| !! | TCATCGTGGCTTTATTGTAT+GGG | + | chr4.3:19829273-19829292 | MS.gene28756:intron | 35.0% |
| AACTTCTGCCTTCTGAATGA+AGG | - | chr4.3:19828729-19828748 | None:intergenic | 40.0% | |
| AATGATACCTTGCCATCAGA+AGG | - | chr4.3:19828586-19828605 | None:intergenic | 40.0% | |
| ACAATCCTTTCTATTGGGGA+CGG | + | chr4.3:19829875-19829894 | MS.gene28756:CDS | 40.0% | |
| ACTTCTGCCTTCTGAATGAA+GGG | - | chr4.3:19828728-19828747 | None:intergenic | 40.0% | |
| AGAGCAAGAGAAATGCTCAA+AGG | - | chr4.3:19829326-19829345 | None:intergenic | 40.0% | |
| ATCCACAGTGATGCATTATC+AGG | + | chr4.3:19828767-19828786 | MS.gene28756:CDS | 40.0% | |
| CAAAACTCCATCACTTCTTC+AGG | + | chr4.3:19828098-19828117 | MS.gene28756:CDS | 40.0% | |
| CAAGATCTACAAGGTCTCAA+CGG | - | chr4.3:19829427-19829446 | None:intergenic | 40.0% | |
| TCACGAGCTGTTGTTGAAAT+TGG | + | chr4.3:19829697-19829716 | MS.gene28756:CDS | 40.0% | |
| TTAACACTCATCTTGTGCTG+TGG | + | chr4.3:19829391-19829410 | MS.gene28756:intron | 40.0% | |
| TTGAAATTGGTGAAGAAGGG+TGG | + | chr4.3:19829710-19829729 | MS.gene28756:CDS | 40.0% | |
| ! | CGGTTTCTATTTCTCAGGTT+TGG | + | chr4.3:19829146-19829165 | MS.gene28756:intron | 40.0% |
| ! | TTGTTCGTGCTCTTTTGGAT+AGG | - | chr4.3:19828246-19828265 | None:intergenic | 40.0% |
| !! | GAAGAAGTGATGGAGTTTTG+AGG | - | chr4.3:19828098-19828117 | None:intergenic | 40.0% |
| !! | TACTAGTACTGGTTCACTCT+TGG | + | chr4.3:19829195-19829214 | MS.gene28756:intron | 40.0% |
| !!! | TGGAGTTTTGAGGATGTTCT+TGG | - | chr4.3:19828088-19828107 | None:intergenic | 40.0% |
| AGACCTTGTAGATCTTGCTC+GGG | + | chr4.3:19829430-19829449 | MS.gene28756:intron | 45.0% | |
| AGGATTGCCCTTCATTCAGA+AGG | + | chr4.3:19828718-19828737 | MS.gene28756:CDS | 45.0% | |
| AGTCCTGTCTGATTGTGCAT+TGG | + | chr4.3:19829102-19829121 | MS.gene28756:intron | 45.0% | |
| CATGTCTGAGGATGAGGAAA+TGG | + | chr4.3:19829775-19829794 | MS.gene28756:CDS | 45.0% | |
| CATGTTTGCCCTGCAATTCA+TGG | - | chr4.3:19829622-19829641 | None:intergenic | 45.0% | |
| CATTTCCTCATCCTCAGACA+TGG | - | chr4.3:19829777-19829796 | None:intergenic | 45.0% | |
| GAGACCTTGTAGATCTTGCT+CGG | + | chr4.3:19829429-19829448 | MS.gene28756:intron | 45.0% | |
| GGGAATCGAAATCAATAGCG+AGG | + | chr4.3:19829009-19829028 | MS.gene28756:intron | 45.0% | |
| GTCCTGTCTGATTGTGCATT+GGG | + | chr4.3:19829103-19829122 | MS.gene28756:intron | 45.0% | |
| TAACCCGAGCAAGATCTACA+AGG | - | chr4.3:19829436-19829455 | None:intergenic | 45.0% | |
| TCCTGTCTGATTGTGCATTG+GGG | + | chr4.3:19829104-19829123 | MS.gene28756:intron | 45.0% | |
| TGCATTTGTGGATGCTGACA+AGG | + | chr4.3:19829658-19829677 | MS.gene28756:CDS | 45.0% | |
| TTACACCGTCCCCAATAGAA+AGG | - | chr4.3:19829883-19829902 | None:intergenic | 45.0% | |
| ! | ATATTTGTTGGGTGTGGCAC+TGG | + | chr4.3:19828427-19828446 | MS.gene28756:intron | 45.0% |
| ! | TGCCTGATAATGCATCACTG+TGG | - | chr4.3:19828772-19828791 | None:intergenic | 45.0% |
| !! | TGTGCCGGTTTCTATTTCTC+AGG | + | chr4.3:19829141-19829160 | MS.gene28756:intron | 45.0% |
| ACCCCAATGCACAATCAGAC+AGG | - | chr4.3:19829108-19829127 | None:intergenic | 50.0% | |
| ATCGCGCCACTGCTACATAA+AGG | - | chr4.3:19829240-19829259 | None:intergenic | 50.0% | |
| GCTCTTGCTCTTCCTTCTGA+TGG | + | chr4.3:19828571-19828590 | MS.gene28756:CDS | 50.0% | |
| TCTGATTGTGCATTGGGGTC+TGG | + | chr4.3:19829109-19829128 | MS.gene28756:intron | 50.0% | |
| TGCTCTTCCTTCTGATGGCA+AGG | + | chr4.3:19828576-19828595 | MS.gene28756:CDS | 50.0% | |
| TGTAGCCATGTCTGAGGATG+AGG | + | chr4.3:19829769-19829788 | MS.gene28756:CDS | 50.0% | |
| ! | AGGAGCGAGTTGGATTGAGT+CGG | + | chr4.3:19829046-19829065 | MS.gene28756:intron | 50.0% |
| ! | ATAGCGAGGTATCATAGGCG+TGG | + | chr4.3:19829023-19829042 | MS.gene28756:intron | 50.0% |
| ! | TGGTTCTGTAGCCATGTCTG+AGG | + | chr4.3:19829763-19829782 | MS.gene28756:CDS | 50.0% |
| ! | TGTGCATTGGGGTCTGGTTC+TGG | + | chr4.3:19829115-19829134 | MS.gene28756:intron | 55.0% |
| ATAGGCGTGGAGGAGCGAGT+TGG | + | chr4.3:19829036-19829055 | MS.gene28756:intron | 60.0% | |
| ! | GCGAGGTATCATAGGCGTGG+AGG | + | chr4.3:19829026-19829045 | MS.gene28756:intron | 60.0% |
| !! | GTCTGGTTCTGGCTCTGTGC+CGG | + | chr4.3:19829126-19829145 | MS.gene28756:intron | 60.0% |
| !! | TTGTTGGGTGTGGCACTGGC+AGG | + | chr4.3:19828431-19828450 | MS.gene28756:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 19828081 | 19829922 | 19828081 | ID=MS.gene28756 |
| chr4.3 | mRNA | 19828081 | 19829922 | 19828081 | ID=MS.gene28756.t1;Parent=MS.gene28756 |
| chr4.3 | exon | 19828081 | 19828119 | 19828081 | ID=MS.gene28756.t1.exon1;Parent=MS.gene28756.t1 |
| chr4.3 | CDS | 19828081 | 19828119 | 19828081 | ID=cds.MS.gene28756.t1;Parent=MS.gene28756.t1 |
| chr4.3 | exon | 19828224 | 19828309 | 19828224 | ID=MS.gene28756.t1.exon2;Parent=MS.gene28756.t1 |
| chr4.3 | CDS | 19828224 | 19828309 | 19828224 | ID=cds.MS.gene28756.t1;Parent=MS.gene28756.t1 |
| chr4.3 | exon | 19828453 | 19828597 | 19828453 | ID=MS.gene28756.t1.exon3;Parent=MS.gene28756.t1 |
| chr4.3 | CDS | 19828453 | 19828597 | 19828453 | ID=cds.MS.gene28756.t1;Parent=MS.gene28756.t1 |
| chr4.3 | exon | 19828680 | 19828808 | 19828680 | ID=MS.gene28756.t1.exon4;Parent=MS.gene28756.t1 |
| chr4.3 | CDS | 19828680 | 19828808 | 19828680 | ID=cds.MS.gene28756.t1;Parent=MS.gene28756.t1 |
| chr4.3 | exon | 19829632 | 19829922 | 19829632 | ID=MS.gene28756.t1.exon5;Parent=MS.gene28756.t1 |
| chr4.3 | CDS | 19829632 | 19829922 | 19829632 | ID=cds.MS.gene28756.t1;Parent=MS.gene28756.t1 |
| Gene Sequence |
| Protein sequence |
