Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35069.t1 | XP_013457252.1 | 98.3 | 229 | 4 | 0 | 1 | 229 | 1 | 229 | 3.60E-119 | 437.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35069.t1 | C7AE94 | 67.5 | 228 | 73 | 1 | 3 | 229 | 7 | 234 | 3.7e-80 | 299.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35069.t1 | A0A072UQF3 | 98.3 | 229 | 4 | 0 | 1 | 229 | 1 | 229 | 2.6e-119 | 437.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049580 | MS.gene35069 | 0.803764 | 2.98E-49 | -1.69E-46 |
| MS.gene049824 | MS.gene35069 | 0.802923 | 4.46E-49 | -1.69E-46 |
| MS.gene049825 | MS.gene35069 | 0.841597 | 4.31E-58 | -1.69E-46 |
| MS.gene049873 | MS.gene35069 | 0.817566 | 3.09E-52 | -1.69E-46 |
| MS.gene050559 | MS.gene35069 | 0.812205 | 4.77E-51 | -1.69E-46 |
| MS.gene051678 | MS.gene35069 | 0.80076 | 1.24E-48 | -1.69E-46 |
| MS.gene051744 | MS.gene35069 | 0.810916 | 9.09E-51 | -1.69E-46 |
| MS.gene052358 | MS.gene35069 | -0.81717 | 3.79E-52 | -1.69E-46 |
| MS.gene053006 | MS.gene35069 | 0.807984 | 3.87E-50 | -1.69E-46 |
| MS.gene053294 | MS.gene35069 | 0.842041 | 3.29E-58 | -1.69E-46 |
| MS.gene053678 | MS.gene35069 | 0.810709 | 1.01E-50 | -1.69E-46 |
| MS.gene053995 | MS.gene35069 | 0.801131 | 1.04E-48 | -1.69E-46 |
| MS.gene055374 | MS.gene35069 | 0.850511 | 1.62E-60 | -1.69E-46 |
| MS.gene05548 | MS.gene35069 | 0.819644 | 1.04E-52 | -1.69E-46 |
| MS.gene055555 | MS.gene35069 | 0.815831 | 7.56E-52 | -1.69E-46 |
| MS.gene055778 | MS.gene35069 | 0.811443 | 6.98E-51 | -1.69E-46 |
| MS.gene055808 | MS.gene35069 | 0.815932 | 7.18E-52 | -1.69E-46 |
| MS.gene056091 | MS.gene35069 | 0.842615 | 2.32E-58 | -1.69E-46 |
| MS.gene057079 | MS.gene35069 | 0.802019 | 6.84E-49 | -1.69E-46 |
| MS.gene057102 | MS.gene35069 | 0.803844 | 2.87E-49 | -1.69E-46 |
| MS.gene057705 | MS.gene35069 | 0.811828 | 5.76E-51 | -1.69E-46 |
| MS.gene05795 | MS.gene35069 | 0.844849 | 5.86E-59 | -1.69E-46 |
| MS.gene058008 | MS.gene35069 | 0.81816 | 2.27E-52 | -1.69E-46 |
| MS.gene058009 | MS.gene35069 | 0.80059 | 1.34E-48 | -1.69E-46 |
| MS.gene058037 | MS.gene35069 | 0.819561 | 1.09E-52 | -1.69E-46 |
| MS.gene058635 | MS.gene35069 | 0.923358 | 2.95E-89 | -1.69E-46 |
| MS.gene05954 | MS.gene35069 | 0.822536 | 2.25E-53 | -1.69E-46 |
| MS.gene060521 | MS.gene35069 | 0.802016 | 6.85E-49 | -1.69E-46 |
| MS.gene060840 | MS.gene35069 | 0.801684 | 8.02E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene35069 | MS.gene049025 | PPI |
| MS.gene35069 | MS.gene28756 | PPI |
| MS.gene35069 | MS.gene75055 | PPI |
| MS.gene26463 | MS.gene35069 | PPI |
| MS.gene35069 | MS.gene074442 | PPI |
| MS.gene06173 | MS.gene35069 | PPI |
| MS.gene35069 | MS.gene053539 | PPI |
| MS.gene20157 | MS.gene35069 | PPI |
| MS.gene028389 | MS.gene35069 | PPI |
| MS.gene059423 | MS.gene35069 | PPI |
| MS.gene053535 | MS.gene35069 | PPI |
| MS.gene28756 | MS.gene35069 | PPI |
| MS.gene35069 | MS.gene051092 | PPI |
| MS.gene35069 | MS.gene25100 | PPI |
| MS.gene047856 | MS.gene35069 | PPI |
| MS.gene66349 | MS.gene35069 | PPI |
| MS.gene030303 | MS.gene35069 | PPI |
| MS.gene064029 | MS.gene35069 | PPI |
| MS.gene55886 | MS.gene35069 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35069.t1 | MTR_4g094368 | 98.253 | 229 | 4 | 0 | 1 | 229 | 1 | 229 | 3.26e-166 | 457 |
| MS.gene35069.t1 | MTR_4g094925 | 54.825 | 228 | 96 | 3 | 3 | 227 | 17 | 240 | 1.72e-83 | 249 |
| MS.gene35069.t1 | MTR_4g085590 | 52.655 | 226 | 104 | 2 | 3 | 227 | 21 | 244 | 9.26e-82 | 244 |
| MS.gene35069.t1 | MTR_4g094815 | 53.097 | 226 | 103 | 3 | 3 | 227 | 22 | 245 | 2.79e-81 | 243 |
| MS.gene35069.t1 | MTR_8g021225 | 54.464 | 224 | 99 | 2 | 5 | 227 | 11 | 232 | 1.55e-80 | 241 |
| MS.gene35069.t1 | MTR_4g094812 | 55.752 | 226 | 97 | 2 | 3 | 227 | 20 | 243 | 3.25e-80 | 240 |
| MS.gene35069.t1 | MTR_4g094898 | 56.195 | 226 | 96 | 3 | 3 | 227 | 22 | 245 | 5.54e-80 | 240 |
| MS.gene35069.t1 | MTR_4g094925 | 55.135 | 185 | 82 | 1 | 44 | 227 | 25 | 209 | 1.07e-70 | 215 |
| MS.gene35069.t1 | MTR_8g101900 | 52.679 | 224 | 102 | 3 | 5 | 227 | 12 | 232 | 2.78e-70 | 215 |
| MS.gene35069.t1 | MTR_4g094898 | 58.152 | 184 | 76 | 1 | 45 | 227 | 1 | 184 | 5.20e-68 | 207 |
| MS.gene35069.t1 | MTR_6g091680 | 50.216 | 231 | 105 | 5 | 4 | 227 | 8 | 235 | 1.37e-66 | 206 |
| MS.gene35069.t1 | MTR_2g070410 | 39.545 | 220 | 122 | 4 | 8 | 227 | 88 | 296 | 2.15e-46 | 155 |
| MS.gene35069.t1 | MTR_2g070410 | 41.379 | 174 | 97 | 2 | 8 | 181 | 88 | 256 | 3.17e-38 | 134 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35069.t1 | AT1G67980 | 62.115 | 227 | 83 | 2 | 3 | 229 | 8 | 231 | 6.51e-97 | 282 |
| MS.gene35069.t1 | AT1G24735 | 60.889 | 225 | 87 | 1 | 5 | 229 | 16 | 239 | 7.80e-95 | 277 |
| MS.gene35069.t1 | AT1G67990 | 57.269 | 227 | 95 | 2 | 3 | 229 | 8 | 232 | 1.28e-90 | 266 |
| MS.gene35069.t1 | AT1G24735 | 49.638 | 276 | 87 | 2 | 5 | 229 | 16 | 290 | 6.93e-85 | 254 |
| MS.gene35069.t1 | AT4G34050 | 50.885 | 226 | 108 | 2 | 3 | 227 | 33 | 256 | 5.64e-79 | 238 |
| MS.gene35069.t1 | AT4G34050 | 50.885 | 226 | 108 | 2 | 3 | 227 | 60 | 283 | 2.21e-78 | 237 |
| MS.gene35069.t1 | AT4G26220 | 51.092 | 229 | 108 | 4 | 2 | 229 | 6 | 231 | 2.00e-75 | 228 |
| MS.gene35069.t1 | AT1G24735 | 59.259 | 189 | 76 | 1 | 41 | 229 | 7 | 194 | 1.53e-74 | 224 |
| MS.gene35069.t1 | AT3G61990 | 40.724 | 221 | 115 | 4 | 8 | 227 | 83 | 288 | 3.20e-53 | 173 |
| MS.gene35069.t1 | AT1G67980 | 51.515 | 165 | 77 | 2 | 65 | 229 | 2 | 163 | 6.69e-49 | 158 |
| MS.gene35069.t1 | AT3G62000 | 38.462 | 221 | 123 | 5 | 8 | 227 | 68 | 276 | 2.45e-46 | 155 |
| MS.gene35069.t1 | AT3G62000 | 37.264 | 212 | 120 | 5 | 8 | 218 | 68 | 267 | 5.45e-39 | 138 |
| MS.gene35069.t1 | AT4G34050 | 44.628 | 121 | 66 | 1 | 108 | 227 | 25 | 145 | 3.67e-32 | 114 |
Find 38 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAACAACAATTCAGAAGTA+TGG | 0.226874 | 4.4:+20373195 | MS.gene35069:CDS |
| TTCAATTGTTCGTGCTCTTT+TGG | 0.241069 | 4.4:-20373162 | None:intergenic |
| TTTCATCACTTTCAGGTAAT+AGG | 0.252449 | 4.4:+20373579 | MS.gene35069:intron |
| GAATCAACAATCCTTTCTAT+TGG | 0.264328 | 4.4:+20375399 | MS.gene35069:CDS |
| AATCAACAATCCTTTCTATT+GGG | 0.280127 | 4.4:+20375400 | MS.gene35069:CDS |
| ATCCACAGTGATGCATTATC+AGG | 0.304543 | 4.4:+20373681 | MS.gene35069:CDS |
| TCACGAGCTGTTGTTGAAAT+TGG | 0.308284 | 4.4:+20375227 | MS.gene35069:CDS |
| TCAGGTAATAGGAATTGATA+TGG | 0.352155 | 4.4:+20373590 | MS.gene35069:intron |
| CAAAACTCCAGCACTTCTTC+AGG | 0.360798 | 4.4:+20373016 | MS.gene35069:CDS |
| TTGCATATGATAACACATTA+TGG | 0.375536 | 4.4:+20375268 | MS.gene35069:CDS |
| ATCATTTGATTATGCATTTG+TGG | 0.388543 | 4.4:+20375176 | MS.gene35069:CDS |
| AGGAAATGGAAGATACAATA+AGG | 0.400536 | 4.4:+20375319 | MS.gene35069:CDS |
| TTTGAGGATGTTCTTGGCCA+TGG | 0.424703 | 4.4:-20372997 | None:intergenic |
| AACTTCTGCCTTCTGAATGA+AGG | 0.443554 | 4.4:-20373640 | None:intergenic |
| TGCTCTTCCTTCTGATGGCA+AGG | 0.457076 | 4.4:+20373490 | MS.gene35069:CDS |
| GCTCTTGCTCTTCCTTCTGA+TGG | 0.470052 | 4.4:+20373485 | MS.gene35069:CDS |
| TTAGAAATTGGAGTCTTCAC+TGG | 0.475666 | 4.4:+20373443 | MS.gene35069:CDS |
| ATTATTACCTGAAGAAGTGC+TGG | 0.476254 | 4.4:-20373023 | None:intergenic |
| GAGTATAATGAATGTGCCTT+TGG | 0.477530 | 4.4:+20373367 | MS.gene35069:CDS |
| GTTGTTGAAATTGGTGAAGA+AGG | 0.485943 | 4.4:+20375236 | MS.gene35069:CDS |
| CATGTCTGAGGATGAGGAAA+TGG | 0.492122 | 4.4:+20375305 | MS.gene35069:CDS |
| TGTAGCCATGTCTGAGGATG+AGG | 0.495939 | 4.4:+20375299 | MS.gene35069:CDS |
| TATGATAACACATTATGGTC+TGG | 0.512907 | 4.4:+20375273 | MS.gene35069:CDS |
| AAACAACAATTCAGAAGTAT+GGG | 0.513999 | 4.4:+20373196 | MS.gene35069:CDS |
| GATAAAGAAGCATATGAGAC+AGG | 0.521908 | 4.4:+20373612 | MS.gene35069:CDS |
| ATCAACAATCCTTTCTATTG+GGG | 0.546246 | 4.4:+20375401 | MS.gene35069:CDS |
| TTGAAATTGGTGAAGAAGGG+TGG | 0.553175 | 4.4:+20375240 | MS.gene35069:CDS |
| AATGATACCTTGCCATCAGA+AGG | 0.554204 | 4.4:-20373497 | None:intergenic |
| ACTTCTGCCTTCTGAATGAA+GGG | 0.557570 | 4.4:-20373639 | None:intergenic |
| ATGAATTGTGCTTCATCCAA+AGG | 0.563739 | 4.4:-20373383 | None:intergenic |
| TTACACCGTCCCCAATAGAA+AGG | 0.565363 | 4.4:-20375410 | None:intergenic |
| TTGTTGAAATTGGTGAAGAA+GGG | 0.567331 | 4.4:+20375237 | MS.gene35069:CDS |
| AGGATTGCCCTTCATTCAGA+AGG | 0.568251 | 4.4:+20373632 | MS.gene35069:CDS |
| CATTTCCTCATCCTCAGACA+TGG | 0.568293 | 4.4:-20375304 | None:intergenic |
| TGCATTTGTGGATGCTGACA+AGG | 0.577388 | 4.4:+20375188 | MS.gene35069:CDS |
| ACAATCCTTTCTATTGGGGA+CGG | 0.594828 | 4.4:+20375405 | MS.gene35069:CDS |
| TGGTTCTGTAGCCATGTCTG+AGG | 0.624517 | 4.4:+20375293 | MS.gene35069:CDS |
| TGCCTGATAATGCATCACTG+TGG | 0.800721 | 4.4:-20373683 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAGATAATCATTCAATT+TGG | - | chr4.4:20373847-20373866 | None:intergenic | 15.0% |
| !! | GTTTCAAAAAGAAAAATTAT+GGG | + | chr4.4:20375036-20375055 | MS.gene35069:intron | 15.0% |
| !! | TGTTTCAAAAAGAAAAATTA+TGG | + | chr4.4:20375035-20375054 | MS.gene35069:intron | 15.0% |
| !!! | ACAGAAAATCATATATTTTT+TGG | + | chr4.4:20374427-20374446 | MS.gene35069:intron | 15.0% |
| !!! | ACATTGATTTTAATATTTGT+TGG | + | chr4.4:20373329-20373348 | MS.gene35069:intron | 15.0% |
| !!! | CATTGATTTTAATATTTGTT+GGG | + | chr4.4:20373330-20373349 | MS.gene35069:intron | 15.0% |
| !!! | CTTATAATAATAGTTCTTTT+CGG | + | chr4.4:20373900-20373919 | MS.gene35069:intron | 15.0% |
| !! | ATAATCATTCAATTTGGATT+GGG | - | chr4.4:20373841-20373860 | None:intergenic | 20.0% |
| !! | ATATCATAAACTCTACTAAA+CGG | - | chr4.4:20374070-20374089 | None:intergenic | 20.0% |
| !! | TAATTAATATCTCTAGTAGA+AGG | - | chr4.4:20373091-20373110 | None:intergenic | 20.0% |
| !! | TTAAGAAAACTCAATTTATC+TGG | - | chr4.4:20373067-20373086 | None:intergenic | 20.0% |
| !! | TTCAATCTCTTAAGTATATT+TGG | + | chr4.4:20375064-20375083 | MS.gene35069:intron | 20.0% |
| !!! | GACATTTTTTATGGAATTAA+CGG | - | chr4.4:20374291-20374310 | None:intergenic | 20.0% |
| ! | AACTATTCTTCTCTATGTAT+TGG | + | chr4.4:20374384-20374403 | MS.gene35069:intron | 25.0% |
| ! | AATCAACAATCCTTTCTATT+GGG | + | chr4.4:20375400-20375419 | MS.gene35069:CDS | 25.0% |
| ! | ATCATTTGATTATGCATTTG+TGG | + | chr4.4:20375176-20375195 | MS.gene35069:CDS | 25.0% |
| ! | GAATAAATTTCATCACTTTC+AGG | + | chr4.4:20373572-20373591 | MS.gene35069:intron | 25.0% |
| ! | GATAATCATTCAATTTGGAT+TGG | - | chr4.4:20373842-20373861 | None:intergenic | 25.0% |
| ! | GCGAAAAAAACATTAGAAAT+TGG | + | chr4.4:20373431-20373450 | MS.gene35069:CDS | 25.0% |
| ! | GTTTATGATATGATTGTTGA+AGG | + | chr4.4:20374079-20374098 | MS.gene35069:intron | 25.0% |
| ! | TACATAGAGAAGAATAGTTT+AGG | - | chr4.4:20374383-20374402 | None:intergenic | 25.0% |
| ! | TCCATAAAAAATGTCTGTAT+TGG | + | chr4.4:20374296-20374315 | MS.gene35069:intron | 25.0% |
| ! | TCGTTTAGACAATGAATTAA+AGG | + | chr4.4:20375115-20375134 | MS.gene35069:intron | 25.0% |
| ! | TTGCATATGATAACACATTA+TGG | + | chr4.4:20375268-20375287 | MS.gene35069:CDS | 25.0% |
| !! | AAACAACAATTCAGAAGTAT+GGG | + | chr4.4:20373196-20373215 | MS.gene35069:CDS | 25.0% |
| !! | AACTTGTTTCAAGAATATAC+TGG | - | chr4.4:20373137-20373156 | None:intergenic | 25.0% |
| !! | ATAATAATAGTTCTTTTCGG+TGG | + | chr4.4:20373903-20373922 | MS.gene35069:intron | 25.0% |
| !! | TCAATTGCAACTTTTCTTTT+TGG | - | chr4.4:20375345-20375364 | None:intergenic | 25.0% |
| !!! | ACCAATACAGACATTTTTTA+TGG | - | chr4.4:20374300-20374319 | None:intergenic | 25.0% |
| !!! | ATTTTAATATTTGTTGGGTG+TGG | + | chr4.4:20373335-20373354 | MS.gene35069:intron | 25.0% |
| !!! | TGTTTGTTTTTTCCTTTGTT+GGG | + | chr4.4:20374605-20374624 | MS.gene35069:intron | 25.0% |
| !!! | TGTTTTAAATTGTATCATCG+TGG | + | chr4.4:20374789-20374808 | MS.gene35069:intron | 25.0% |
| !!! | TTTTGGTTGTCCAATTTTAT+CGG | + | chr4.4:20374444-20374463 | MS.gene35069:intron | 25.0% |
| AAAACAATTCCATGAATTGC+AGG | + | chr4.4:20375140-20375159 | MS.gene35069:intron | 30.0% | |
| AAACAATTCCATGAATTGCA+GGG | + | chr4.4:20375141-20375160 | MS.gene35069:intron | 30.0% | |
| AGGAAAATCTTGGTAAAAGA+GGG | + | chr4.4:20374352-20374371 | MS.gene35069:intron | 30.0% | |
| AGGAAATGGAAGATACAATA+AGG | + | chr4.4:20375319-20375338 | MS.gene35069:CDS | 30.0% | |
| ATCAACAATCCTTTCTATTG+GGG | + | chr4.4:20375401-20375420 | MS.gene35069:CDS | 30.0% | |
| ATCCAAACAACCGATAAAAT+TGG | - | chr4.4:20374457-20374476 | None:intergenic | 30.0% | |
| GAAAACTTAAGGAATGTGAT+TGG | + | chr4.4:20373983-20374002 | MS.gene35069:intron | 30.0% | |
| GAAACAACAATTCAGAAGTA+TGG | + | chr4.4:20373195-20373214 | MS.gene35069:CDS | 30.0% | |
| GAATCAACAATCCTTTCTAT+TGG | + | chr4.4:20375399-20375418 | MS.gene35069:CDS | 30.0% | |
| TATGATAACACATTATGGTC+TGG | + | chr4.4:20375273-20375292 | MS.gene35069:CDS | 30.0% | |
| TATTCTTCTCTATGTATTGG+TGG | + | chr4.4:20374387-20374406 | MS.gene35069:intron | 30.0% | |
| TCAGGTAATAGGAATTGATA+TGG | + | chr4.4:20373590-20373609 | MS.gene35069:intron | 30.0% | |
| TTGTTGAAATTGGTGAAGAA+GGG | + | chr4.4:20375237-20375256 | MS.gene35069:CDS | 30.0% | |
| ! | AACGGATTTCAAACATCTTT+AGG | - | chr4.4:20374273-20374292 | None:intergenic | 30.0% |
| ! | TTTCATCACTTTCAGGTAAT+AGG | + | chr4.4:20373579-20373598 | MS.gene35069:intron | 30.0% |
| !! | GTTGGTTTGATGAAAACTTA+AGG | + | chr4.4:20373972-20373991 | MS.gene35069:intron | 30.0% |
| !! | TTTTTACGTGTTACTAGTAC+TGG | + | chr4.4:20374714-20374733 | MS.gene35069:intron | 30.0% |
| !!! | AAATGTCTGTATTGGTTTTG+AGG | + | chr4.4:20374304-20374323 | MS.gene35069:intron | 30.0% |
| !!! | GTGTTTGTTTTTTCCTTTGT+TGG | + | chr4.4:20374604-20374623 | MS.gene35069:intron | 30.0% |
| !!! | GTTTGTTTTTTCCTTTGTTG+GGG | + | chr4.4:20374606-20374625 | MS.gene35069:intron | 30.0% |
| !!! | TTTTGAGGCTTTTCCAAAAT+AGG | + | chr4.4:20374319-20374338 | MS.gene35069:intron | 30.0% |
| AAGGTAGCTTACCATTTGTT+AGG | + | chr4.4:20374219-20374238 | MS.gene35069:intron | 35.0% | |
| AATCTTCTTCGCCTAACAAA+TGG | - | chr4.4:20374233-20374252 | None:intergenic | 35.0% | |
| ATGAATTGTGCTTCATCCAA+AGG | - | chr4.4:20373386-20373405 | None:intergenic | 35.0% | |
| ATTCCTACTCAGGAAAATCT+TGG | + | chr4.4:20374342-20374361 | MS.gene35069:intron | 35.0% | |
| CAAACCTGAGAAATAGAAAC+CGG | - | chr4.4:20374678-20374697 | None:intergenic | 35.0% | |
| CAGGAAAATCTTGGTAAAAG+AGG | + | chr4.4:20374351-20374370 | MS.gene35069:intron | 35.0% | |
| GAGTATAATGAATGTGCCTT+TGG | + | chr4.4:20373367-20373386 | MS.gene35069:CDS | 35.0% | |
| GATATGATTGTTGAAGGAGT+TGG | + | chr4.4:20374085-20374104 | MS.gene35069:intron | 35.0% | |
| GGAAAATCTTGGTAAAAGAG+GGG | + | chr4.4:20374353-20374372 | MS.gene35069:intron | 35.0% | |
| GTTGTTGAAATTGGTGAAGA+AGG | + | chr4.4:20375236-20375255 | MS.gene35069:CDS | 35.0% | |
| TAAGATCTACAAGGTCTCAA+CGG | - | chr4.4:20374957-20374976 | None:intergenic | 35.0% | |
| TAAGGAATGTGATTGGAGAT+GGG | + | chr4.4:20373990-20374009 | MS.gene35069:intron | 35.0% | |
| TAGCAATATCGTCTTTGTGT+CGG | + | chr4.4:20374826-20374845 | MS.gene35069:intron | 35.0% | |
| TATCATCCTTTATGTAGCAG+TGG | + | chr4.4:20374761-20374780 | MS.gene35069:intron | 35.0% | |
| TTAAGGAATGTGATTGGAGA+TGG | + | chr4.4:20373989-20374008 | MS.gene35069:intron | 35.0% | |
| TTAGAAATTGGAGTCTTCAC+TGG | + | chr4.4:20373443-20373462 | MS.gene35069:CDS | 35.0% | |
| TTTGTTAGGCGAAGAAGATT+CGG | + | chr4.4:20374233-20374252 | MS.gene35069:intron | 35.0% | |
| ! | AATCAATAGCGAGGTATTTG+AGG | + | chr4.4:20373936-20373955 | MS.gene35069:intron | 35.0% |
| ! | ATAATAGTTCTTTTCGGTGG+AGG | + | chr4.4:20373906-20373925 | MS.gene35069:intron | 35.0% |
| ! | ATGGGAAAGAGACGAATTTT+TGG | + | chr4.4:20374008-20374027 | MS.gene35069:intron | 35.0% |
| ! | ATTATTACCTGAAGAAGTGC+TGG | - | chr4.4:20373026-20373045 | None:intergenic | 35.0% |
| ! | CTCAATTTATCTGGTTTCAG+TGG | - | chr4.4:20373058-20373077 | None:intergenic | 35.0% |
| ! | GATAAAGAAGCATATGAGAC+AGG | + | chr4.4:20373612-20373631 | MS.gene35069:CDS | 35.0% |
| ! | TAATAGTTCTTTTCGGTGGA+GGG | + | chr4.4:20373907-20373926 | MS.gene35069:intron | 35.0% |
| ! | TTACCAAGATTTTCCTGAGT+AGG | - | chr4.4:20374348-20374367 | None:intergenic | 35.0% |
| ! | TTCAATTGTTCGTGCTCTTT+TGG | - | chr4.4:20373165-20373184 | None:intergenic | 35.0% |
| ! | TTCTATTTCTCAGGTTTGGA+TGG | + | chr4.4:20374680-20374699 | MS.gene35069:intron | 35.0% |
| !! | ATCATCGTGGCTTTATTGTA+TGG | + | chr4.4:20374802-20374821 | MS.gene35069:intron | 35.0% |
| !! | GTCCAATTTTATCGGTTGTT+TGG | + | chr4.4:20374452-20374471 | MS.gene35069:intron | 35.0% |
| !! | TCATCGTGGCTTTATTGTAT+GGG | + | chr4.4:20374803-20374822 | MS.gene35069:intron | 35.0% |
| !!! | GTGTTTGTTTTTTCCTACTC+AGG | + | chr4.4:20374490-20374509 | MS.gene35069:intron | 35.0% |
| !!! | TTTGTTTTTTCCTACTCAGG+TGG | + | chr4.4:20374493-20374512 | MS.gene35069:intron | 35.0% |
| AAACGAATTAGATGCGCTAG+AGG | - | chr4.4:20375101-20375120 | None:intergenic | 40.0% | |
| AAATTGTCTCCATCGATCCA+TGG | - | chr4.4:20374040-20374059 | None:intergenic | 40.0% | |
| AACTTCTGCCTTCTGAATGA+AGG | - | chr4.4:20373643-20373662 | None:intergenic | 40.0% | |
| AATGATACCTTGCCATCAGA+AGG | - | chr4.4:20373500-20373519 | None:intergenic | 40.0% | |
| ACAATCCTTTCTATTGGGGA+CGG | + | chr4.4:20375405-20375424 | MS.gene35069:CDS | 40.0% | |
| ACAGGAAGATGTTTGGAAGT+GGG | + | chr4.4:20374176-20374195 | MS.gene35069:intron | 40.0% | |
| ACTTCTGCCTTCTGAATGAA+GGG | - | chr4.4:20373642-20373661 | None:intergenic | 40.0% | |
| AGACCTTGTAGATCTTACTC+GGG | + | chr4.4:20374960-20374979 | MS.gene35069:intron | 40.0% | |
| AGAGCAAGAGAAATGCTCAA+AGG | - | chr4.4:20374856-20374875 | None:intergenic | 40.0% | |
| ATCCACAGTGATGCATTATC+AGG | + | chr4.4:20373681-20373700 | MS.gene35069:CDS | 40.0% | |
| ATCGGTTGTTTGGATTGAGT+CGG | + | chr4.4:20374462-20374481 | MS.gene35069:intron | 40.0% | |
| CCAAAATAGGATTCCTACTC+AGG | + | chr4.4:20374332-20374351 | MS.gene35069:intron | 40.0% | |
| GAGACCTTGTAGATCTTACT+CGG | + | chr4.4:20374959-20374978 | MS.gene35069:intron | 40.0% | |
| TAACCCGAGTAAGATCTACA+AGG | - | chr4.4:20374966-20374985 | None:intergenic | 40.0% | |
| TACAGGAAGATGTTTGGAAG+TGG | + | chr4.4:20374175-20374194 | MS.gene35069:intron | 40.0% | |
| TCACGAGCTGTTGTTGAAAT+TGG | + | chr4.4:20375227-20375246 | MS.gene35069:CDS | 40.0% | |
| TTAACACTCATCTTGTGCTG+TGG | + | chr4.4:20374921-20374940 | MS.gene35069:intron | 40.0% | |
| TTGAAATTGGTGAAGAAGGG+TGG | + | chr4.4:20375240-20375259 | MS.gene35069:CDS | 40.0% | |
| ! | AAGAAGGCTGTTTCAATAGG+AGG | + | chr4.4:20374110-20374129 | MS.gene35069:intron | 40.0% |
| ! | CCTGAGTAGGAATCCTATTT+TGG | - | chr4.4:20374335-20374354 | None:intergenic | 40.0% |
| ! | CGGTTTCTATTTCTCAGGTT+TGG | + | chr4.4:20374676-20374695 | MS.gene35069:intron | 40.0% |
| ! | GAGAAGAAGGCTGTTTCAAT+AGG | + | chr4.4:20374107-20374126 | MS.gene35069:intron | 40.0% |
| ! | TTGTTCGTGCTCTTTTGGAT+AGG | - | chr4.4:20373160-20373179 | None:intergenic | 40.0% |
| ! | TTTTTCCTACTCAGGTGGAT+TGG | + | chr4.4:20374498-20374517 | MS.gene35069:intron | 40.0% |
| !! | CGAATTTTTGGATAGAGCCA+TGG | + | chr4.4:20374020-20374039 | MS.gene35069:intron | 40.0% |
| !! | CTCTATGTATTGGTGGATTG+TGG | + | chr4.4:20374394-20374413 | MS.gene35069:intron | 40.0% |
| !!! | TGGAGTTTTGAGGATGTTCT+TGG | - | chr4.4:20373006-20373025 | None:intergenic | 40.0% |
| AATAGGAGGAGGAGATGGTT+TGG | + | chr4.4:20374124-20374143 | MS.gene35069:intron | 45.0% | |
| AGAGGCGAGTTTCTCAGTTA+AGG | + | chr4.4:20374200-20374219 | MS.gene35069:intron | 45.0% | |
| AGGATTGCCCTTCATTCAGA+AGG | + | chr4.4:20373632-20373651 | MS.gene35069:CDS | 45.0% | |
| AGTCCTGTCTGATTGTGCAT+TGG | + | chr4.4:20374632-20374651 | MS.gene35069:intron | 45.0% | |
| CAAAACTCCAGCACTTCTTC+AGG | + | chr4.4:20373016-20373035 | MS.gene35069:CDS | 45.0% | |
| CAGGAAGATGTTTGGAAGTG+GGG | + | chr4.4:20374177-20374196 | MS.gene35069:intron | 45.0% | |
| CATGTCTGAGGATGAGGAAA+TGG | + | chr4.4:20375305-20375324 | MS.gene35069:CDS | 45.0% | |
| CATGTTTGCCCTGCAATTCA+TGG | - | chr4.4:20375152-20375171 | None:intergenic | 45.0% | |
| CATTTCCTCATCCTCAGACA+TGG | - | chr4.4:20375307-20375326 | None:intergenic | 45.0% | |
| GGGAATCGAAATCAATAGCG+AGG | + | chr4.4:20373927-20373946 | MS.gene35069:intron | 45.0% | |
| GTCCTGTCTGATTGTGCATT+GGG | + | chr4.4:20374633-20374652 | MS.gene35069:intron | 45.0% | |
| GTTGAAGGAGTTGGAGAAGA+AGG | + | chr4.4:20374094-20374113 | MS.gene35069:intron | 45.0% | |
| GTTTCAATAGGAGGAGGAGA+TGG | + | chr4.4:20374119-20374138 | MS.gene35069:intron | 45.0% | |
| TCCTGTCTGATTGTGCATTG+GGG | + | chr4.4:20374634-20374653 | MS.gene35069:intron | 45.0% | |
| TGCATTTGTGGATGCTGACA+AGG | + | chr4.4:20375188-20375207 | MS.gene35069:CDS | 45.0% | |
| TTACACCGTCCCCAATAGAA+AGG | - | chr4.4:20375413-20375432 | None:intergenic | 45.0% | |
| ! | AAGGCTGTTTCAATAGGAGG+AGG | + | chr4.4:20374113-20374132 | MS.gene35069:intron | 45.0% |
| ! | ATATTTGTTGGGTGTGGCAC+TGG | + | chr4.4:20373341-20373360 | MS.gene35069:intron | 45.0% |
| ! | TGCCTGATAATGCATCACTG+TGG | - | chr4.4:20373686-20373705 | None:intergenic | 45.0% |
| !! | TGTGCCGGTTTCTATTTCTC+AGG | + | chr4.4:20374671-20374690 | MS.gene35069:intron | 45.0% |
| !!! | GAAGAAGTGCTGGAGTTTTG+AGG | - | chr4.4:20373016-20373035 | None:intergenic | 45.0% |
| !! | TAATTAAAGATATATTTATA+TGG | + | chr4.4:20373810-20373829 | MS.gene35069:intron | 5.0% |
| ACAGGACTAGACCCCAACAA+AGG | - | chr4.4:20374620-20374639 | None:intergenic | 50.0% | |
| ACCCCAATGCACAATCAGAC+AGG | - | chr4.4:20374638-20374657 | None:intergenic | 50.0% | |
| AGATGTTTGGAAGTGGGGAG+AGG | + | chr4.4:20374182-20374201 | MS.gene35069:intron | 50.0% | |
| AGGCGAAGAAGATTCGGAAG+TGG | + | chr4.4:20374239-20374258 | MS.gene35069:intron | 50.0% | |
| ATCCACCAATCCACCTGAGT+AGG | - | chr4.4:20374506-20374525 | None:intergenic | 50.0% | |
| ATCGCGCCACTGCTACATAA+AGG | - | chr4.4:20374770-20374789 | None:intergenic | 50.0% | |
| CGAAGAAGATTCGGAAGTGG+TGG | + | chr4.4:20374242-20374261 | MS.gene35069:intron | 50.0% | |
| CTTGGAGTTGAGAAGTGGGA+GGG | + | chr4.4:20374149-20374168 | MS.gene35069:intron | 50.0% | |
| GCTCTTGCTCTTCCTTCTGA+TGG | + | chr4.4:20373485-20373504 | MS.gene35069:CDS | 50.0% | |
| GGGACGTACAGGAAGATGTT+TGG | + | chr4.4:20374169-20374188 | MS.gene35069:intron | 50.0% | |
| GGTGCTTGGAGTTGAGAAGT+GGG | + | chr4.4:20374145-20374164 | MS.gene35069:intron | 50.0% | |
| TCTGATTGTGCATTGGGGTC+TGG | + | chr4.4:20374639-20374658 | MS.gene35069:intron | 50.0% | |
| TGCTCTTCCTTCTGATGGCA+AGG | + | chr4.4:20373490-20373509 | MS.gene35069:CDS | 50.0% | |
| TGGATAGAGCCATGGATCGA+TGG | + | chr4.4:20374028-20374047 | MS.gene35069:intron | 50.0% | |
| TGGTGCTTGGAGTTGAGAAG+TGG | + | chr4.4:20374144-20374163 | MS.gene35069:intron | 50.0% | |
| TGTAGCCATGTCTGAGGATG+AGG | + | chr4.4:20375299-20375318 | MS.gene35069:CDS | 50.0% | |
| ! | AAGATTCGGAAGTGGTGGAG+TGG | + | chr4.4:20374247-20374266 | MS.gene35069:intron | 50.0% |
| ! | ATAGCGAGGTATTTGAGGCG+TGG | + | chr4.4:20373941-20373960 | MS.gene35069:intron | 50.0% |
| ! | TGGTTCTGTAGCCATGTCTG+AGG | + | chr4.4:20375293-20375312 | MS.gene35069:CDS | 50.0% |
| !! | TCAGGTGGATTGGTGGATTG+TGG | + | chr4.4:20374508-20374527 | MS.gene35069:intron | 50.0% |
| !! | TTCCTACTCAGGTGGATTGG+TGG | + | chr4.4:20374501-20374520 | MS.gene35069:intron | 50.0% |
| GCTTGGAGTTGAGAAGTGGG+AGG | + | chr4.4:20374148-20374167 | MS.gene35069:intron | 55.0% | |
| ! | TGTGCATTGGGGTCTGGTTC+TGG | + | chr4.4:20374645-20374664 | MS.gene35069:intron | 55.0% |
| !! | GGAGGAGATGGTTTGGTGCT+TGG | + | chr4.4:20374131-20374150 | MS.gene35069:intron | 55.0% |
| GAGAAGTGGGAGGGACGTAC+AGG | + | chr4.4:20374158-20374177 | MS.gene35069:intron | 60.0% | |
| TGAGGCGTGGAGGAGCTAGT+TGG | + | chr4.4:20373954-20373973 | MS.gene35069:intron | 60.0% | |
| ! | GCGAGGTATTTGAGGCGTGG+AGG | + | chr4.4:20373944-20373963 | MS.gene35069:intron | 60.0% |
| !! | GTCTGGTTCTGGCTCTGTGC+CGG | + | chr4.4:20374656-20374675 | MS.gene35069:intron | 60.0% |
| !! | TTGTTGGGTGTGGCACTGGC+AGG | + | chr4.4:20373345-20373364 | MS.gene35069:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 20372999 | 20375452 | 20372999 | ID=MS.gene35069 |
| chr4.4 | mRNA | 20372999 | 20375452 | 20372999 | ID=MS.gene35069.t1;Parent=MS.gene35069 |
| chr4.4 | exon | 20372999 | 20373037 | 20372999 | ID=MS.gene35069.t1.exon1;Parent=MS.gene35069.t1 |
| chr4.4 | CDS | 20372999 | 20373037 | 20372999 | ID=cds.MS.gene35069.t1;Parent=MS.gene35069.t1 |
| chr4.4 | exon | 20373138 | 20373223 | 20373138 | ID=MS.gene35069.t1.exon2;Parent=MS.gene35069.t1 |
| chr4.4 | CDS | 20373138 | 20373223 | 20373138 | ID=cds.MS.gene35069.t1;Parent=MS.gene35069.t1 |
| chr4.4 | exon | 20373367 | 20373511 | 20373367 | ID=MS.gene35069.t1.exon3;Parent=MS.gene35069.t1 |
| chr4.4 | CDS | 20373367 | 20373511 | 20373367 | ID=cds.MS.gene35069.t1;Parent=MS.gene35069.t1 |
| chr4.4 | exon | 20373594 | 20373722 | 20373594 | ID=MS.gene35069.t1.exon4;Parent=MS.gene35069.t1 |
| chr4.4 | CDS | 20373594 | 20373722 | 20373594 | ID=cds.MS.gene35069.t1;Parent=MS.gene35069.t1 |
| chr4.4 | exon | 20375162 | 20375452 | 20375162 | ID=MS.gene35069.t1.exon5;Parent=MS.gene35069.t1 |
| chr4.4 | CDS | 20375162 | 20375452 | 20375162 | ID=cds.MS.gene35069.t1;Parent=MS.gene35069.t1 |
| Gene Sequence |
| Protein sequence |
