Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053535.t1 | Q40313.1 | 100 | 247 | 0 | 0 | 1 | 247 | 1 | 247 | 1.30E-138 | 502.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053535.t1 | Q40313 | 100.0 | 247 | 0 | 0 | 1 | 247 | 1 | 247 | 3.1e-141 | 502.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053535.t1 | G7JK14 | 99.6 | 247 | 1 | 0 | 1 | 247 | 1 | 247 | 3.5e-138 | 500.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053535 | MS.gene053537 | 0.964691 | 1.20E-123 | -1.69E-46 |
| MS.gene053535 | MS.gene053539 | 0.984135 | 1.10E-159 | -1.69E-46 |
| MS.gene053535 | MS.gene059423 | 0.995604 | 5.83E-218 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene053535 | MS.gene030303 | PPI |
| MS.gene053535 | MS.gene20157 | PPI |
| MS.gene053535 | MS.gene074442 | PPI |
| MS.gene028389 | MS.gene053535 | PPI |
| MS.gene053535 | MS.gene35069 | PPI |
| MS.gene053535 | MS.gene051092 | PPI |
| MS.gene053535 | MS.gene25100 | PPI |
| MS.gene66349 | MS.gene053535 | PPI |
| MS.gene053535 | MS.gene06173 | PPI |
| MS.gene064029 | MS.gene053535 | PPI |
| MS.gene053535 | MS.gene049025 | PPI |
| MS.gene053535 | MS.gene28756 | PPI |
| MS.gene55886 | MS.gene053535 | PPI |
| MS.gene053535 | MS.gene75055 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053535.t1 | MTR_4g085590 | 99.595 | 247 | 1 | 0 | 1 | 247 | 1 | 247 | 0.0 | 509 |
| MS.gene053535.t1 | MTR_4g094815 | 68.980 | 245 | 76 | 0 | 3 | 247 | 4 | 248 | 1.98e-130 | 369 |
| MS.gene053535.t1 | MTR_4g094925 | 64.228 | 246 | 84 | 1 | 1 | 246 | 1 | 242 | 7.95e-121 | 344 |
| MS.gene053535.t1 | MTR_4g094898 | 67.347 | 245 | 80 | 0 | 3 | 247 | 4 | 248 | 1.97e-119 | 341 |
| MS.gene053535.t1 | MTR_4g094812 | 68.293 | 246 | 77 | 1 | 1 | 246 | 1 | 245 | 6.03e-118 | 337 |
| MS.gene053535.t1 | MTR_4g094925 | 67.914 | 187 | 60 | 0 | 60 | 246 | 25 | 211 | 8.71e-98 | 285 |
| MS.gene053535.t1 | MTR_8g021225 | 57.965 | 226 | 95 | 0 | 20 | 245 | 8 | 233 | 3.06e-93 | 274 |
| MS.gene053535.t1 | MTR_4g094898 | 70.053 | 187 | 56 | 0 | 61 | 247 | 1 | 187 | 1.37e-92 | 270 |
| MS.gene053535.t1 | MTR_8g101900 | 58.036 | 224 | 93 | 1 | 23 | 246 | 12 | 234 | 4.75e-87 | 258 |
| MS.gene053535.t1 | MTR_6g091680 | 55.357 | 224 | 99 | 1 | 23 | 246 | 15 | 237 | 6.39e-84 | 250 |
| MS.gene053535.t1 | MTR_4g094368 | 52.212 | 226 | 105 | 2 | 21 | 244 | 3 | 227 | 1.92e-79 | 239 |
| MS.gene053535.t1 | MTR_2g070410 | 38.991 | 218 | 121 | 4 | 29 | 245 | 91 | 297 | 5.09e-46 | 155 |
| MS.gene053535.t1 | MTR_2g070410 | 40.116 | 172 | 99 | 2 | 29 | 200 | 91 | 258 | 7.05e-37 | 131 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053535.t1 | AT4G34050 | 89.669 | 242 | 25 | 0 | 5 | 246 | 44 | 285 | 1.62e-168 | 466 |
| MS.gene053535.t1 | AT4G34050 | 89.669 | 242 | 25 | 0 | 5 | 246 | 17 | 258 | 1.75e-168 | 465 |
| MS.gene053535.t1 | AT4G26220 | 58.850 | 226 | 92 | 1 | 21 | 246 | 7 | 231 | 3.83e-97 | 284 |
| MS.gene053535.t1 | AT1G67980 | 54.936 | 233 | 99 | 3 | 16 | 246 | 3 | 231 | 5.27e-90 | 266 |
| MS.gene053535.t1 | AT1G67990 | 53.509 | 228 | 101 | 3 | 21 | 246 | 8 | 232 | 6.99e-84 | 250 |
| MS.gene053535.t1 | AT1G24735 | 53.540 | 226 | 101 | 3 | 23 | 246 | 16 | 239 | 4.00e-80 | 241 |
| MS.gene053535.t1 | AT4G34050 | 88.618 | 123 | 14 | 0 | 124 | 246 | 25 | 147 | 4.29e-80 | 237 |
| MS.gene053535.t1 | AT1G24735 | 54.301 | 186 | 83 | 2 | 61 | 246 | 11 | 194 | 3.22e-66 | 204 |
| MS.gene053535.t1 | AT1G24735 | 54.301 | 186 | 83 | 2 | 61 | 246 | 107 | 290 | 3.61e-65 | 204 |
| MS.gene053535.t1 | AT3G62000 | 40.351 | 228 | 125 | 5 | 19 | 245 | 60 | 277 | 4.55e-49 | 163 |
| MS.gene053535.t1 | AT1G67980 | 45.181 | 166 | 87 | 2 | 81 | 246 | 2 | 163 | 1.31e-47 | 155 |
| MS.gene053535.t1 | AT3G61990 | 42.396 | 217 | 112 | 5 | 29 | 245 | 86 | 289 | 1.32e-46 | 157 |
| MS.gene053535.t1 | AT3G62000 | 38.710 | 217 | 122 | 5 | 19 | 234 | 60 | 266 | 1.11e-39 | 140 |
Find 58 sgRNAs with CRISPR-Local
Find 87 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTAGCATTGATAAGTTTA+AGG | 0.154244 | 4.3:-27208493 | None:intergenic |
| CAAGATCGATTAACCTCTTA+TGG | 0.268687 | 4.3:-27209119 | None:intergenic |
| ATAAATACCTTTCCATCTTC+AGG | 0.276991 | 4.3:-27208575 | None:intergenic |
| GCTAAGAATACCATGGAAAT+TGG | 0.278001 | 4.3:+27208509 | MS.gene053535:CDS |
| TAACAAAGAAAATTACGAAT+TGG | 0.303369 | 4.3:+27208843 | MS.gene053535:CDS |
| GATCAAAAGCAAACTGAATC+TGG | 0.306656 | 4.3:+27208060 | MS.gene053535:CDS |
| TTCATAGCTTCATGTTCTCT+TGG | 0.316977 | 4.3:-27208248 | None:intergenic |
| TCGGCTACGACAACACCTTA+TGG | 0.326245 | 4.3:+27209160 | MS.gene053535:CDS |
| TACTTCCTCAATGGAGCATC+AGG | 0.355841 | 4.3:-27209204 | None:intergenic |
| TTTGGAGCTTAACAAGGCTT+TGG | 0.370464 | 4.3:+27209251 | MS.gene053535:CDS |
| GTTAATCGATCTTGTTAAAG+TGG | 0.393377 | 4.3:+27209128 | MS.gene053535:CDS |
| AACAAAGAAAATTACGAATT+GGG | 0.394736 | 4.3:+27208844 | MS.gene053535:CDS |
| AGCATACATATTTCAATCCT+AGG | 0.403073 | 4.3:-27209282 | None:intergenic |
| TCATAGCTTCATGTTCTCTT+GGG | 0.406275 | 4.3:-27208247 | None:intergenic |
| CTCCATTGAGGAAGTATGTT+AGG | 0.425117 | 4.3:+27209211 | MS.gene053535:CDS |
| TTGATCATTTCATCAAGAAC+TGG | 0.432518 | 4.3:-27208931 | None:intergenic |
| GCCCTAGCTATTCCTGAAGA+TGG | 0.453375 | 4.3:+27208563 | MS.gene053535:CDS |
| ATTACCTCAACTACCATAAG+AGG | 0.454646 | 4.3:+27209106 | MS.gene053535:CDS |
| CACAAAATTGATTTCAGAGA+AGG | 0.464239 | 4.3:+27208898 | MS.gene053535:CDS |
| GCTTAACAAGGCTTTGGCTG+TGG | 0.469408 | 4.3:+27209257 | MS.gene053535:CDS |
| AGCTAGGGCAGTGGCAAGGA+GGG | 0.490733 | 4.3:-27208549 | None:intergenic |
| TCATCAAGAACTGGAAGAGC+TGG | 0.494231 | 4.3:-27208922 | None:intergenic |
| AGGCTTTGGCTGTGGACCCT+AGG | 0.500768 | 4.3:+27209265 | MS.gene053535:CDS |
| TACCTAACATACTTCCTCAA+TGG | 0.510094 | 4.3:-27209213 | None:intergenic |
| TTCCATCTTCAGGAATAGCT+AGG | 0.514348 | 4.3:-27208565 | None:intergenic |
| ACAAAGTGATGCCCTTTACC+AGG | 0.515306 | 4.3:+27208116 | MS.gene053535:CDS |
| TCTGGAAGACATCAAGAAGT+TGG | 0.517673 | 4.3:+27208078 | MS.gene053535:CDS |
| ATAGTGATTCCATCACCAAC+AGG | 0.521355 | 4.3:-27209306 | None:intergenic |
| AAATTGTGTGTACCTGGTAA+AGG | 0.529467 | 4.3:-27208128 | None:intergenic |
| ATGACAACCTCTGCAGATGA+AGG | 0.539968 | 4.3:+27208452 | MS.gene053535:CDS |
| AATTGTGTGTACCTGGTAAA+GGG | 0.545677 | 4.3:-27208127 | None:intergenic |
| ATGTTCTCTTGGGAAGACAC+TGG | 0.546160 | 4.3:-27208237 | None:intergenic |
| GTTAAAGTGGGAGGTGTGAT+CGG | 0.548322 | 4.3:+27209141 | MS.gene053535:CDS |
| AACCACAGATCCATTCCATA+AGG | 0.552846 | 4.3:-27209175 | None:intergenic |
| TTAACCTCTTATGGTAGTTG+AGG | 0.561488 | 4.3:-27209110 | None:intergenic |
| TACGACAACACCTTATGGAA+TGG | 0.561597 | 4.3:+27209165 | MS.gene053535:CDS |
| AGCTATTCCTGAAGATGGAA+AGG | 0.565418 | 4.3:+27208568 | MS.gene053535:CDS |
| ATCGATCTTGTTAAAGTGGG+AGG | 0.565493 | 4.3:+27209132 | MS.gene053535:CDS |
| ATGGAAATTGGTGTCTACAC+TGG | 0.567113 | 4.3:+27208521 | MS.gene053535:CDS |
| AAATCAATTACTTGATCCTA+CGG | 0.569584 | 4.3:-27209332 | None:intergenic |
| TCCATCTTCAGGAATAGCTA+GGG | 0.570121 | 4.3:-27208564 | None:intergenic |
| TTAATCGATCTTGTTAAAGT+GGG | 0.572330 | 4.3:+27209129 | MS.gene053535:CDS |
| GAAATATGTATGCTTCCTGT+TGG | 0.574969 | 4.3:+27209291 | MS.gene053535:CDS |
| ACTTCCTCAATGGAGCATCA+GGG | 0.579332 | 4.3:-27209203 | None:intergenic |
| TGTATGCTTCCTGTTGGTGA+TGG | 0.580796 | 4.3:+27209297 | MS.gene053535:CDS |
| TAGCTAGGGCAGTGGCAAGG+AGG | 0.584857 | 4.3:-27208550 | None:intergenic |
| CTTCCTCAATGGAGCATCAG+GGG | 0.588342 | 4.3:-27209202 | None:intergenic |
| GCATACATATTTCAATCCTA+GGG | 0.589825 | 4.3:-27209281 | None:intergenic |
| TTCAGGAATAGCTAGGGCAG+TGG | 0.598779 | 4.3:-27208558 | None:intergenic |
| AAATTGTCCTTCATCTGCAG+AGG | 0.606260 | 4.3:-27208459 | None:intergenic |
| AGTGTAGACACCAATTTCCA+TGG | 0.614822 | 4.3:-27208519 | None:intergenic |
| TATCAATGCTAAGAATACCA+TGG | 0.621099 | 4.3:+27208502 | MS.gene053535:CDS |
| CACCTTATGGAATGGATCTG+TGG | 0.632572 | 4.3:+27209173 | MS.gene053535:CDS |
| ATGGAATCACTATCTGCCGT+AGG | 0.633911 | 4.3:+27209316 | MS.gene053535:CDS |
| GAATAGCTAGGGCAGTGGCA+AGG | 0.635775 | 4.3:-27208553 | None:intergenic |
| TTCCTCAATGGAGCATCAGG+GGG | 0.651997 | 4.3:-27209201 | None:intergenic |
| AGGTCACAGCAAAACACCCA+TGG | 0.652192 | 4.3:+27208282 | MS.gene053535:CDS |
| AGCTATGAAAGAGTTGAGAG+AGG | 0.657735 | 4.3:+27208262 | MS.gene053535:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATCTAATTGATTATATAA+TGG | - | chr4.3:27208641-27208660 | None:intergenic | 10.0% |
| !! | TGCTAAAAAATTTAAATTAT+GGG | - | chr4.3:27208163-27208182 | None:intergenic | 10.0% |
| !! | TTGCTAAAAAATTTAAATTA+TGG | - | chr4.3:27208164-27208183 | None:intergenic | 10.0% |
| !!! | TGATTTTTTGTTAATTTTTT+AGG | + | chr4.3:27209032-27209051 | MS.gene053535:intron | 10.0% |
| !! | AACAAAGAAAATTACGAATT+GGG | + | chr4.3:27208844-27208863 | MS.gene053535:CDS | 20.0% |
| !! | TAACAAAGAAAATTACGAAT+TGG | + | chr4.3:27208843-27208862 | MS.gene053535:CDS | 20.0% |
| !!! | ATGAAAAAAGTTCTAACAAA+AGG | - | chr4.3:27208693-27208712 | None:intergenic | 20.0% |
| !!! | ATTTTTTAGCAAGAACTTTT+CGG | + | chr4.3:27208172-27208191 | MS.gene053535:intron | 20.0% |
| !!! | ATTTTTTAGGAAAAGAATCA+TGG | + | chr4.3:27209045-27209064 | MS.gene053535:intron | 20.0% |
| !!! | TTTTTCTTCATAGAAAAAGA+TGG | - | chr4.3:27208971-27208990 | None:intergenic | 20.0% |
| ! | ATTGAACAAAACAACAAAAC+AGG | + | chr4.3:27208423-27208442 | MS.gene053535:intron | 25.0% |
| ! | GAATTACGAATTATTACCAT+GGG | - | chr4.3:27208301-27208320 | None:intergenic | 25.0% |
| ! | GAGATATCATGTAAAATCAA+GGG | + | chr4.3:27208767-27208786 | MS.gene053535:intron | 25.0% |
| ! | TCAATGGAACCTAATTAATA+AGG | - | chr4.3:27208357-27208376 | None:intergenic | 25.0% |
| ! | TCCAATTGATATAAGTTCAA+TGG | - | chr4.3:27208373-27208392 | None:intergenic | 25.0% |
| ! | TCCATTGAACTTATATCAAT+TGG | + | chr4.3:27208369-27208388 | MS.gene053535:intron | 25.0% |
| ! | TGAATTACGAATTATTACCA+TGG | - | chr4.3:27208302-27208321 | None:intergenic | 25.0% |
| ! | TGAGATATCATGTAAAATCA+AGG | + | chr4.3:27208766-27208785 | MS.gene053535:intron | 25.0% |
| ! | TTAATCGATCTTGTTAAAGT+GGG | + | chr4.3:27209129-27209148 | MS.gene053535:CDS | 25.0% |
| !! | CTTTTGTGTTTAGTAAAGTA+AGG | + | chr4.3:27208714-27208733 | MS.gene053535:intron | 25.0% |
| !! | GGTCTAATACTTAATTTTTC+TGG | + | chr4.3:27208788-27208807 | MS.gene053535:intron | 25.0% |
| !! | GTTGTAATTGTTACAGATTT+TGG | + | chr4.3:27208810-27208829 | MS.gene053535:intron | 25.0% |
| !!! | GTACTATAGAGATTTTGTTT+TGG | + | chr4.3:27209233-27209252 | MS.gene053535:CDS | 25.0% |
| !!! | TCTTAGCATTGATAAGTTTA+AGG | - | chr4.3:27208496-27208515 | None:intergenic | 25.0% |
| AAAATGAAATTGTGTGTACC+TGG | - | chr4.3:27208137-27208156 | None:intergenic | 30.0% | |
| AGCATACATATTTCAATCCT+AGG | - | chr4.3:27209285-27209304 | None:intergenic | 30.0% | |
| ATAAATACCTTTCCATCTTC+AGG | - | chr4.3:27208578-27208597 | None:intergenic | 30.0% | |
| CTACCTGTAATTAAAAAAGC+TGG | + | chr4.3:27208868-27208887 | MS.gene053535:CDS | 30.0% | |
| CTCGATCTACCTTATTAATT+AGG | + | chr4.3:27208345-27208364 | MS.gene053535:intron | 30.0% | |
| GCATACATATTTCAATCCTA+GGG | - | chr4.3:27209284-27209303 | None:intergenic | 30.0% | |
| GTGTTTAGTAAAGTAAGGTT+AGG | + | chr4.3:27208719-27208738 | MS.gene053535:intron | 30.0% | |
| GTTAATCGATCTTGTTAAAG+TGG | + | chr4.3:27209128-27209147 | MS.gene053535:CDS | 30.0% | |
| TATCAATGCTAAGAATACCA+TGG | + | chr4.3:27208502-27208521 | MS.gene053535:CDS | 30.0% | |
| TTGATCATTTCATCAAGAAC+TGG | - | chr4.3:27208934-27208953 | None:intergenic | 30.0% | |
| ! | CACAAAATTGATTTCAGAGA+AGG | + | chr4.3:27208898-27208917 | MS.gene053535:CDS | 30.0% |
| !! | TAGCTACGATTTCATTTTTG+TGG | + | chr4.3:27209068-27209087 | MS.gene053535:CDS | 30.0% |
| !!! | ACACCAGCTTTTTTAATTAC+AGG | - | chr4.3:27208874-27208893 | None:intergenic | 30.0% |
| !!! | ATTGTTACAGATTTTGGCTA+TGG | + | chr4.3:27208816-27208835 | MS.gene053535:intron | 30.0% |
| !!! | TTTTGTTTTGGAGCTTAACA+AGG | + | chr4.3:27209245-27209264 | MS.gene053535:CDS | 30.0% |
| AAATTGTGTGTACCTGGTAA+AGG | - | chr4.3:27208131-27208150 | None:intergenic | 35.0% | |
| AATTGTGTGTACCTGGTAAA+GGG | - | chr4.3:27208130-27208149 | None:intergenic | 35.0% | |
| ATTACCTCAACTACCATAAG+AGG | + | chr4.3:27209106-27209125 | MS.gene053535:CDS | 35.0% | |
| CAAGATCGATTAACCTCTTA+TGG | - | chr4.3:27209122-27209141 | None:intergenic | 35.0% | |
| GAAATATGTATGCTTCCTGT+TGG | + | chr4.3:27209291-27209310 | MS.gene053535:CDS | 35.0% | |
| GATCAAAAGCAAACTGAATC+TGG | + | chr4.3:27208060-27208079 | MS.gene053535:CDS | 35.0% | |
| GCTAAGAATACCATGGAAAT+TGG | + | chr4.3:27208509-27208528 | MS.gene053535:CDS | 35.0% | |
| TACCTAACATACTTCCTCAA+TGG | - | chr4.3:27209216-27209235 | None:intergenic | 35.0% | |
| TCATAGCTTCATGTTCTCTT+GGG | - | chr4.3:27208250-27208269 | None:intergenic | 35.0% | |
| TTAACCTCTTATGGTAGTTG+AGG | - | chr4.3:27209113-27209132 | None:intergenic | 35.0% | |
| TTCATAGCTTCATGTTCTCT+TGG | - | chr4.3:27208251-27208270 | None:intergenic | 35.0% | |
| !! | AGTTTGCTTTTGATCTTCGT+TGG | - | chr4.3:27208055-27208074 | None:intergenic | 35.0% |
| AAATTGTCCTTCATCTGCAG+AGG | - | chr4.3:27208462-27208481 | None:intergenic | 40.0% | |
| AACCACAGATCCATTCCATA+AGG | - | chr4.3:27209178-27209197 | None:intergenic | 40.0% | |
| AGCTATGAAAGAGTTGAGAG+AGG | + | chr4.3:27208262-27208281 | MS.gene053535:CDS | 40.0% | |
| AGCTATTCCTGAAGATGGAA+AGG | + | chr4.3:27208568-27208587 | MS.gene053535:CDS | 40.0% | |
| AGTGTAGACACCAATTTCCA+TGG | - | chr4.3:27208522-27208541 | None:intergenic | 40.0% | |
| ATAGTGATTCCATCACCAAC+AGG | - | chr4.3:27209309-27209328 | None:intergenic | 40.0% | |
| ATCGATCTTGTTAAAGTGGG+AGG | + | chr4.3:27209132-27209151 | MS.gene053535:CDS | 40.0% | |
| TACGACAACACCTTATGGAA+TGG | + | chr4.3:27209165-27209184 | MS.gene053535:CDS | 40.0% | |
| TCCATCTTCAGGAATAGCTA+GGG | - | chr4.3:27208567-27208586 | None:intergenic | 40.0% | |
| TCTGGAAGACATCAAGAAGT+TGG | + | chr4.3:27208078-27208097 | MS.gene053535:CDS | 40.0% | |
| TTCCATCTTCAGGAATAGCT+AGG | - | chr4.3:27208568-27208587 | None:intergenic | 40.0% | |
| ! | ATGGAAATTGGTGTCTACAC+TGG | + | chr4.3:27208521-27208540 | MS.gene053535:CDS | 40.0% |
| ! | CTCCATTGAGGAAGTATGTT+AGG | + | chr4.3:27209211-27209230 | MS.gene053535:CDS | 40.0% |
| ! | TTTGGAGCTTAACAAGGCTT+TGG | + | chr4.3:27209251-27209270 | MS.gene053535:CDS | 40.0% |
| ACAAAGTGATGCCCTTTACC+AGG | + | chr4.3:27208116-27208135 | MS.gene053535:CDS | 45.0% | |
| ATGACAACCTCTGCAGATGA+AGG | + | chr4.3:27208452-27208471 | MS.gene053535:CDS | 45.0% | |
| ATGGAATCACTATCTGCCGT+AGG | + | chr4.3:27209316-27209335 | MS.gene053535:CDS | 45.0% | |
| ATGTTCTCTTGGGAAGACAC+TGG | - | chr4.3:27208240-27208259 | None:intergenic | 45.0% | |
| CACCTTATGGAATGGATCTG+TGG | + | chr4.3:27209173-27209192 | MS.gene053535:CDS | 45.0% | |
| TCATCAAGAACTGGAAGAGC+TGG | - | chr4.3:27208925-27208944 | None:intergenic | 45.0% | |
| ! | ACTTCCTCAATGGAGCATCA+GGG | - | chr4.3:27209206-27209225 | None:intergenic | 45.0% |
| ! | GTTAAAGTGGGAGGTGTGAT+CGG | + | chr4.3:27209141-27209160 | MS.gene053535:CDS | 45.0% |
| ! | TACTTCCTCAATGGAGCATC+AGG | - | chr4.3:27209207-27209226 | None:intergenic | 45.0% |
| ! | TGTATGCTTCCTGTTGGTGA+TGG | + | chr4.3:27209297-27209316 | MS.gene053535:CDS | 45.0% |
| AGGTCACAGCAAAACACCCA+TGG | + | chr4.3:27208282-27208301 | MS.gene053535:CDS | 50.0% | |
| GCCCTAGCTATTCCTGAAGA+TGG | + | chr4.3:27208563-27208582 | MS.gene053535:CDS | 50.0% | |
| TCGGCTACGACAACACCTTA+TGG | + | chr4.3:27209160-27209179 | MS.gene053535:CDS | 50.0% | |
| TTCAGGAATAGCTAGGGCAG+TGG | - | chr4.3:27208561-27208580 | None:intergenic | 50.0% | |
| ! | CTTCCTCAATGGAGCATCAG+GGG | - | chr4.3:27209205-27209224 | None:intergenic | 50.0% |
| ! | GCTTAACAAGGCTTTGGCTG+TGG | + | chr4.3:27209257-27209276 | MS.gene053535:CDS | 50.0% |
| ! | TTCCTCAATGGAGCATCAGG+GGG | - | chr4.3:27209204-27209223 | None:intergenic | 50.0% |
| GAATAGCTAGGGCAGTGGCA+AGG | - | chr4.3:27208556-27208575 | None:intergenic | 55.0% | |
| AGCTAGGGCAGTGGCAAGGA+GGG | - | chr4.3:27208552-27208571 | None:intergenic | 60.0% | |
| CACCCCCTGATGCTCCATTG+AGG | + | chr4.3:27209199-27209218 | MS.gene053535:CDS | 60.0% | |
| TAGCTAGGGCAGTGGCAAGG+AGG | - | chr4.3:27208553-27208572 | None:intergenic | 60.0% | |
| ! | AGGCTTTGGCTGTGGACCCT+AGG | + | chr4.3:27209265-27209284 | MS.gene053535:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 27208045 | 27209347 | 27208045 | ID=MS.gene053535 |
| chr4.3 | mRNA | 27208045 | 27209347 | 27208045 | ID=MS.gene053535.t1;Parent=MS.gene053535 |
| chr4.3 | exon | 27208045 | 27208137 | 27208045 | ID=MS.gene053535.t1.exon1;Parent=MS.gene053535.t1 |
| chr4.3 | CDS | 27208045 | 27208137 | 27208045 | ID=cds.MS.gene053535.t1;Parent=MS.gene053535.t1 |
| chr4.3 | exon | 27208224 | 27208303 | 27208224 | ID=MS.gene053535.t1.exon2;Parent=MS.gene053535.t1 |
| chr4.3 | CDS | 27208224 | 27208303 | 27208224 | ID=cds.MS.gene053535.t1;Parent=MS.gene053535.t1 |
| chr4.3 | exon | 27208445 | 27208589 | 27208445 | ID=MS.gene053535.t1.exon3;Parent=MS.gene053535.t1 |
| chr4.3 | CDS | 27208445 | 27208589 | 27208445 | ID=cds.MS.gene053535.t1;Parent=MS.gene053535.t1 |
| chr4.3 | exon | 27208826 | 27208957 | 27208826 | ID=MS.gene053535.t1.exon4;Parent=MS.gene053535.t1 |
| chr4.3 | CDS | 27208826 | 27208957 | 27208826 | ID=cds.MS.gene053535.t1;Parent=MS.gene053535.t1 |
| chr4.3 | exon | 27209054 | 27209347 | 27209054 | ID=MS.gene053535.t1.exon5;Parent=MS.gene053535.t1 |
| chr4.3 | CDS | 27209054 | 27209347 | 27209054 | ID=cds.MS.gene053535.t1;Parent=MS.gene053535.t1 |
| Gene Sequence |
| Protein sequence |
