Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030474.t1 | XP_013446956.1 | 99.2 | 255 | 2 | 0 | 1 | 255 | 1 | 255 | 3.90E-130 | 474.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030474.t1 | Q2QR07 | 56.5 | 248 | 101 | 3 | 8 | 249 | 10 | 256 | 7.3e-69 | 261.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030474.t1 | A0A072TVU1 | 99.2 | 255 | 2 | 0 | 1 | 255 | 1 | 255 | 2.8e-130 | 474.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene030474 | MS.gene017178 | PPI |
| MS.gene030474 | MS.gene065500 | PPI |
| MS.gene030474 | MS.gene76933 | PPI |
| MS.gene030474 | MS.gene94431 | PPI |
| MS.gene030474 | MS.gene038413 | PPI |
| MS.gene030474 | MS.gene76929 | PPI |
| MS.gene030474 | MS.gene80949 | PPI |
| MS.gene030474 | MS.gene062296 | PPI |
| MS.gene030474 | MS.gene54502 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030474.t1 | MTR_8g096320 | 99.216 | 255 | 2 | 0 | 1 | 255 | 1 | 255 | 0.0 | 499 |
| MS.gene030474.t1 | MTR_8g096320 | 99.000 | 200 | 2 | 0 | 56 | 255 | 1 | 200 | 1.94e-140 | 392 |
| MS.gene030474.t1 | MTR_3g098910 | 50.794 | 252 | 117 | 4 | 1 | 246 | 1 | 251 | 4.55e-87 | 261 |
| MS.gene030474.t1 | MTR_3g098930 | 64.550 | 189 | 66 | 1 | 6 | 194 | 7 | 194 | 1.62e-86 | 256 |
| MS.gene030474.t1 | MTR_7g405710 | 57.870 | 216 | 90 | 1 | 1 | 216 | 1 | 215 | 4.75e-83 | 250 |
| MS.gene030474.t1 | MTR_7g007490 | 53.478 | 230 | 106 | 1 | 2 | 231 | 3 | 231 | 5.83e-82 | 246 |
| MS.gene030474.t1 | MTR_5g067530 | 56.604 | 212 | 91 | 1 | 5 | 216 | 6 | 216 | 6.05e-82 | 247 |
| MS.gene030474.t1 | MTR_7g405730 | 56.481 | 216 | 93 | 1 | 1 | 216 | 1 | 215 | 7.75e-81 | 244 |
| MS.gene030474.t1 | MTR_5g092600 | 52.703 | 222 | 103 | 2 | 11 | 232 | 12 | 231 | 6.10e-79 | 238 |
| MS.gene030474.t1 | MTR_8g096310 | 47.479 | 238 | 120 | 4 | 5 | 238 | 4 | 240 | 5.92e-71 | 219 |
| MS.gene030474.t1 | MTR_2g007890 | 49.524 | 210 | 104 | 1 | 1 | 210 | 4 | 211 | 1.48e-67 | 211 |
| MS.gene030474.t1 | MTR_2g436310 | 43.182 | 220 | 124 | 1 | 9 | 228 | 5 | 223 | 3.48e-52 | 170 |
| MS.gene030474.t1 | MTR_3g080990 | 40.930 | 215 | 126 | 1 | 4 | 217 | 3 | 217 | 1.12e-45 | 154 |
| MS.gene030474.t1 | MTR_6g007633 | 43.842 | 203 | 110 | 3 | 11 | 210 | 10 | 211 | 1.76e-45 | 152 |
| MS.gene030474.t1 | MTR_6g007637 | 41.204 | 216 | 123 | 3 | 1 | 213 | 1 | 215 | 4.47e-45 | 152 |
| MS.gene030474.t1 | MTR_8g099730 | 38.235 | 238 | 144 | 3 | 11 | 246 | 20 | 256 | 6.60e-45 | 152 |
| MS.gene030474.t1 | MTR_3g089125 | 37.281 | 228 | 135 | 5 | 11 | 233 | 7 | 231 | 3.62e-44 | 149 |
| MS.gene030474.t1 | MTR_6g007623 | 41.546 | 207 | 115 | 5 | 11 | 213 | 7 | 211 | 2.50e-42 | 144 |
| MS.gene030474.t1 | MTR_8g042490 | 38.164 | 207 | 124 | 3 | 13 | 217 | 18 | 222 | 8.04e-41 | 140 |
| MS.gene030474.t1 | MTR_1g029380 | 35.294 | 221 | 139 | 3 | 10 | 228 | 6 | 224 | 9.49e-40 | 138 |
| MS.gene030474.t1 | MTR_1g028460 | 31.390 | 223 | 150 | 1 | 6 | 225 | 3 | 225 | 2.18e-36 | 129 |
| MS.gene030474.t1 | MTR_2g073190 | 33.803 | 213 | 135 | 4 | 13 | 222 | 18 | 227 | 1.08e-33 | 129 |
| MS.gene030474.t1 | MTR_3g090950 | 30.508 | 236 | 151 | 4 | 13 | 240 | 10 | 240 | 3.77e-33 | 121 |
| MS.gene030474.t1 | MTR_3g090940 | 30.833 | 240 | 159 | 4 | 6 | 240 | 3 | 240 | 2.83e-32 | 119 |
| MS.gene030474.t1 | MTR_4g106990 | 36.649 | 191 | 118 | 2 | 29 | 217 | 35 | 224 | 4.80e-32 | 118 |
| MS.gene030474.t1 | MTR_8g099730 | 35.233 | 193 | 122 | 3 | 56 | 246 | 1 | 192 | 1.47e-28 | 107 |
| MS.gene030474.t1 | MTR_6g007610 | 31.628 | 215 | 128 | 5 | 11 | 211 | 10 | 219 | 5.48e-26 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030474.t1 | AT5G50800 | 57.676 | 241 | 100 | 2 | 1 | 240 | 1 | 240 | 3.55e-94 | 279 |
| MS.gene030474.t1 | AT5G50790 | 53.689 | 244 | 109 | 4 | 1 | 242 | 1 | 242 | 2.34e-91 | 271 |
| MS.gene030474.t1 | AT3G48740 | 54.918 | 244 | 101 | 4 | 4 | 242 | 6 | 245 | 5.49e-88 | 263 |
| MS.gene030474.t1 | AT5G23660 | 54.545 | 242 | 105 | 3 | 4 | 242 | 6 | 245 | 1.27e-87 | 262 |
| MS.gene030474.t1 | AT5G13170 | 55.963 | 218 | 91 | 3 | 9 | 225 | 11 | 224 | 5.30e-85 | 255 |
| MS.gene030474.t1 | AT4G25010 | 52.245 | 245 | 116 | 1 | 1 | 244 | 1 | 245 | 7.74e-85 | 254 |
| MS.gene030474.t1 | AT2G39060 | 49.772 | 219 | 108 | 2 | 9 | 227 | 9 | 225 | 5.36e-75 | 229 |
| MS.gene030474.t1 | AT4G15920 | 42.925 | 212 | 119 | 2 | 9 | 219 | 5 | 215 | 1.26e-53 | 174 |
| MS.gene030474.t1 | AT3G16690 | 41.589 | 214 | 123 | 2 | 9 | 221 | 5 | 217 | 1.67e-53 | 173 |
| MS.gene030474.t1 | AT3G16690 | 41.589 | 214 | 123 | 2 | 9 | 221 | 40 | 252 | 2.41e-53 | 174 |
| MS.gene030474.t1 | AT5G40260 | 40.444 | 225 | 129 | 5 | 10 | 230 | 9 | 232 | 2.53e-46 | 155 |
| MS.gene030474.t1 | AT5G62850 | 39.524 | 210 | 122 | 4 | 11 | 217 | 10 | 217 | 2.66e-45 | 152 |
| MS.gene030474.t1 | AT1G21460 | 36.771 | 223 | 135 | 4 | 11 | 230 | 7 | 226 | 6.48e-42 | 144 |
| MS.gene030474.t1 | AT4G10850 | 37.273 | 220 | 134 | 4 | 11 | 227 | 12 | 230 | 1.13e-41 | 143 |
| MS.gene030474.t1 | AT5G53190 | 34.728 | 239 | 142 | 4 | 13 | 247 | 10 | 238 | 2.98e-41 | 142 |
| MS.gene030474.t1 | AT5G40260 | 42.781 | 187 | 103 | 4 | 10 | 192 | 9 | 195 | 9.59e-40 | 137 |
| MS.gene030474.t1 | AT3G14770 | 35.885 | 209 | 129 | 4 | 11 | 216 | 16 | 222 | 6.63e-38 | 133 |
| MS.gene030474.t1 | AT1G66770 | 34.928 | 209 | 134 | 2 | 11 | 217 | 12 | 220 | 1.36e-37 | 133 |
| MS.gene030474.t1 | AT5G62850 | 38.919 | 185 | 108 | 4 | 11 | 192 | 10 | 192 | 1.22e-36 | 129 |
| MS.gene030474.t1 | AT3G28007 | 36.538 | 208 | 129 | 3 | 13 | 218 | 12 | 218 | 4.00e-34 | 124 |
| MS.gene030474.t1 | AT1G21460 | 37.113 | 194 | 116 | 4 | 11 | 201 | 7 | 197 | 1.53e-33 | 120 |
| MS.gene030474.t1 | AT3G16690 | 37.671 | 146 | 89 | 2 | 9 | 153 | 5 | 149 | 3.45e-25 | 99.0 |
Find 60 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGTATACCCTTTGTTTCTT+TGG | 0.184748 | 4.4:+7085621 | None:intergenic |
| CTTCTCTTGCTGAATGTGTT+TGG | 0.204848 | 4.4:-7085460 | MS.gene030474:CDS |
| TGTATACCCTTTGTTTCTTT+GGG | 0.209074 | 4.4:+7085622 | None:intergenic |
| GTTTCTTTGGGGCATAAATT+AGG | 0.220003 | 4.4:+7085634 | None:intergenic |
| AACAATTCCAAAAGTGTTAA+TGG | 0.230115 | 4.4:+7085683 | None:intergenic |
| CTTATCACCATTAACACTTT+TGG | 0.238695 | 4.4:-7085690 | MS.gene030474:CDS |
| GAAATCTGCTGAGGGATTTC+AGG | 0.262581 | 4.4:-7085793 | MS.gene030474:CDS |
| TTCTCTTGCTGAATGTGTTT+GGG | 0.283443 | 4.4:-7085459 | MS.gene030474:CDS |
| TCTTCTATGGCCTTCTCCTC+AGG | 0.284550 | 4.4:-7085106 | MS.gene030474:CDS |
| TTGCTGAATGTGTTTGGGTT+TGG | 0.294795 | 4.4:-7085454 | MS.gene030474:CDS |
| GCTGTTATGTGGTTCTTCTA+TGG | 0.316301 | 4.4:-7085119 | MS.gene030474:CDS |
| ATAATTGATGTTGTGAAGAT+TGG | 0.346357 | 4.4:-7084668 | MS.gene030474:CDS |
| TGGCCATGACTCGTGAATCT+TGG | 0.380436 | 4.4:-7086473 | MS.gene030474:CDS |
| CTCAACTCTTGACCCTTCAT+TGG | 0.382813 | 4.4:+7084701 | None:intergenic |
| GGCACCTCCACCTGCACGAT+TGG | 0.385028 | 4.4:+7084637 | None:intergenic |
| GGCCATGACTCGTGAATCTT+GGG | 0.392828 | 4.4:-7086472 | MS.gene030474:CDS |
| GCACCTCCACCTGCACGATT+GGG | 0.405651 | 4.4:+7084638 | None:intergenic |
| AACACACTTGGATTTGTGTT+CGG | 0.406416 | 4.4:-7084782 | MS.gene030474:CDS |
| GAACCACATAACAGCATTGA+TGG | 0.426987 | 4.4:+7085127 | None:intergenic |
| AACACAAATCCAAGTGTGTT+TGG | 0.437116 | 4.4:+7084785 | None:intergenic |
| CTGAAAAGTGCCACAACATA+AGG | 0.441782 | 4.4:+7085765 | None:intergenic |
| CTTCTATGGCCTTCTCCTCA+GGG | 0.446491 | 4.4:-7085105 | MS.gene030474:CDS |
| GCAAAACGTCTTGCTATCAT+AGG | 0.455733 | 4.4:-7085394 | MS.gene030474:CDS |
| TAACCATCAATGCTGTTATG+TGG | 0.489473 | 4.4:-7085130 | MS.gene030474:CDS |
| GGTGGTAGAGGCACCAATGA+AGG | 0.494736 | 4.4:-7084714 | MS.gene030474:CDS |
| TCAGGCACTTCCTTATGTTG+TGG | 0.494964 | 4.4:-7085775 | MS.gene030474:CDS |
| CATAGTAATCCCTGAGGAGA+AGG | 0.500559 | 4.4:+7085096 | None:intergenic |
| AGGCAACATCATTTCCTTTG+CGG | 0.507976 | 4.4:-7085951 | MS.gene030474:CDS |
| TTCATTGGTGCCTCTACCAC+CGG | 0.508469 | 4.4:+7084716 | None:intergenic |
| AAATGCTACACCGGTGGTAG+AGG | 0.509728 | 4.4:-7084726 | MS.gene030474:CDS |
| CCATGCAGAGCAAAGTCATA+AGG | 0.515167 | 4.4:-7085196 | MS.gene030474:intron |
| GACCCCAATCGTGCAGGTGG+AGG | 0.519554 | 4.4:-7084641 | MS.gene030474:CDS |
| GTATACCCTTTGTTTCTTTG+GGG | 0.522852 | 4.4:+7085623 | None:intergenic |
| AGCCCAAGATTCACGAGTCA+TGG | 0.538849 | 4.4:+7086470 | None:intergenic |
| TCAACTCTCTACCTCTCAAA+GGG | 0.539975 | 4.4:-7085418 | MS.gene030474:CDS |
| TTAAAATCAGACTTTGCTAA+CGG | 0.544654 | 4.4:+7084616 | None:intergenic |
| TTCAAGAAGAAATCTGCTGA+GGG | 0.551711 | 4.4:-7085801 | MS.gene030474:CDS |
| TGTGTTCGGCATAATTCAGA+TGG | 0.552676 | 4.4:-7084768 | MS.gene030474:CDS |
| ATCAACTCTCTACCTCTCAA+AGG | 0.553313 | 4.4:-7085419 | MS.gene030474:CDS |
| GGAAACGACCCCAATCGTGC+AGG | 0.560744 | 4.4:-7084647 | MS.gene030474:CDS |
| TTTATGCCCCAAAGAAACAA+AGG | 0.567569 | 4.4:-7085629 | MS.gene030474:CDS |
| AACGACCCCAATCGTGCAGG+TGG | 0.576027 | 4.4:-7084644 | MS.gene030474:CDS |
| TTATGCCCCAAAGAAACAAA+GGG | 0.578048 | 4.4:-7085628 | MS.gene030474:intron |
| AACGTCTTGCTATCATAGGA+TGG | 0.590309 | 4.4:-7085390 | MS.gene030474:CDS |
| GTGGTAGAGGCACCAATGAA+GGG | 0.591402 | 4.4:-7084713 | MS.gene030474:CDS |
| ATGCAGCTACCAAACACACT+TGG | 0.593312 | 4.4:-7084794 | MS.gene030474:intron |
| CTTCAAGAAGAAATCTGCTG+AGG | 0.593379 | 4.4:-7085802 | MS.gene030474:CDS |
| CACCTCCACCTGCACGATTG+GGG | 0.600426 | 4.4:+7084639 | None:intergenic |
| CAAACACATTCAGCAAGAGA+AGG | 0.625179 | 4.4:+7085461 | None:intergenic |
| GATATATAGAAATGCTACAC+CGG | 0.637638 | 4.4:-7084735 | MS.gene030474:CDS |
| GTAGAGAGTTGATAGAAGCA+TGG | 0.638407 | 4.4:+7085429 | None:intergenic |
| ATACTTACAATGACGAAGAG+AGG | 0.639522 | 4.4:+7085331 | None:intergenic |
| ATACACTTATGTTGAAAACA+AGG | 0.640633 | 4.4:+7085362 | None:intergenic |
| TGGTGAGAGGAACACCGCAA+AGG | 0.662139 | 4.4:+7085937 | None:intergenic |
| GTTCGGCATAATTCAGATGG+TGG | 0.664212 | 4.4:-7084765 | MS.gene030474:CDS |
| TGGTTACTTACAATGGTGAG+AGG | 0.666494 | 4.4:+7085924 | None:intergenic |
| AAGGGTCAAGAGTTGAGTGG+TGG | 0.679444 | 4.4:-7084695 | MS.gene030474:CDS |
| ATATAGAAATGCTACACCGG+TGG | 0.693921 | 4.4:-7084732 | MS.gene030474:CDS |
| ATGAAGGGTCAAGAGTTGAG+TGG | 0.696772 | 4.4:-7084698 | MS.gene030474:CDS |
| CGGCAACATAGTAATCCCTG+AGG | 0.770046 | 4.4:+7085090 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATCAAATATATATGT+AGG | - | chr4.4:7085048-7085067 | MS.gene030474:intron | 10.0% |
| !! | TATCAAATATTAAAGTTAAA+GGG | + | chr4.4:7086090-7086109 | None:intergenic | 10.0% |
| !! | TTATCAAATATTAAAGTTAA+AGG | + | chr4.4:7086091-7086110 | None:intergenic | 10.0% |
| !!! | TAGTAAAGTTTTTTTTTATA+AGG | + | chr4.4:7085550-7085569 | None:intergenic | 10.0% |
| !! | ATATATACATATATACGTTT+AGG | + | chr4.4:7085244-7085263 | None:intergenic | 15.0% |
| !! | TAATTTACAAGAAAACAAAA+TGG | + | chr4.4:7085195-7085214 | None:intergenic | 15.0% |
| !!! | AATTAGAAAACTTTTCATAT+AGG | - | chr4.4:7086236-7086255 | MS.gene030474:intron | 15.0% |
| !!! | ATTATATGAATATTGACTTA+CGG | + | chr4.4:7086029-7086048 | None:intergenic | 15.0% |
| !!! | ATTTTAATTAGCATGTTAAT+TGG | - | chr4.4:7084923-7084942 | MS.gene030474:intron | 15.0% |
| !! | ATGTATATATTTGTATATGC+AGG | - | chr4.4:7085254-7085273 | MS.gene030474:intron | 20.0% |
| !! | GTTAACGTAATTAAGAAAAT+TGG | + | chr4.4:7086211-7086230 | None:intergenic | 20.0% |
| !! | TATCACTTACTCATTTAATT+GGG | + | chr4.4:7085848-7085867 | None:intergenic | 20.0% |
| !! | TTATCACTTACTCATTTAAT+TGG | + | chr4.4:7085849-7085868 | None:intergenic | 20.0% |
| !!! | AAAAGCTAACGTTAAATTTT+AGG | + | chr4.4:7084877-7084896 | None:intergenic | 20.0% |
| !!! | ATTGAATCTTTTCTTCTTTT+TGG | - | chr4.4:7086274-7086293 | MS.gene030474:intron | 20.0% |
| !!! | TTCTAGTTTCTTTTTATAAG+CGG | - | chr4.4:7084800-7084819 | MS.gene030474:intron | 20.0% |
| ! | AAAAAGAAGGACAAGAAAAA+TGG | + | chr4.4:7085947-7085966 | None:intergenic | 25.0% |
| ! | AACAAAATGGTTACTTACAA+TGG | + | chr4.4:7085182-7085201 | None:intergenic | 25.0% |
| ! | AATAATATATGCATGGCTTA+TGG | + | chr4.4:7084691-7084710 | None:intergenic | 25.0% |
| ! | AATCTGTATGTATGTTAACA+CGG | + | chr4.4:7084951-7084970 | None:intergenic | 25.0% |
| ! | ACGTAATTAAGAAAATTGGT+AGG | + | chr4.4:7086207-7086226 | None:intergenic | 25.0% |
| ! | ATAATTGATGTTGTGAAGAT+TGG | - | chr4.4:7086428-7086447 | MS.gene030474:intron | 25.0% |
| ! | ATACACTTATGTTGAAAACA+AGG | + | chr4.4:7085737-7085756 | None:intergenic | 25.0% |
| ! | CATACAAAGTACAAACAAAT+GGG | + | chr4.4:7086059-7086078 | None:intergenic | 25.0% |
| ! | CGTAATTAAGAAAATTGGTA+GGG | + | chr4.4:7086206-7086225 | None:intergenic | 25.0% |
| ! | GAAAAGCAATAATATATGCA+TGG | + | chr4.4:7084698-7084717 | None:intergenic | 25.0% |
| ! | GAAGATGATATTGATGAATA+AGG | + | chr4.4:7084783-7084802 | None:intergenic | 25.0% |
| ! | GTAATTAAGAAAATTGGTAG+GGG | + | chr4.4:7086205-7086224 | None:intergenic | 25.0% |
| ! | TTGAAGATTACGTAAAAAGT+TGG | + | chr4.4:7085280-7085299 | None:intergenic | 25.0% |
| ! | TTTAATGTGCTTCATTAATG+TGG | - | chr4.4:7086142-7086161 | MS.gene030474:intron | 25.0% |
| !!! | AACAATTCCAAAAGTGTTAA+TGG | + | chr4.4:7085416-7085435 | None:intergenic | 25.0% |
| !!! | ATTTTACTCTAAAGAACGTT+TGG | + | chr4.4:7084905-7084924 | None:intergenic | 25.0% |
| !!! | CTTTTTGTCATTGTTTTTAC+AGG | - | chr4.4:7085125-7085144 | MS.gene030474:CDS | 25.0% |
| AGAAACATCTAAGTGCTATA+TGG | - | chr4.4:7086178-7086197 | MS.gene030474:intron | 30.0% | |
| CCATACAAAGTACAAACAAA+TGG | + | chr4.4:7086060-7086079 | None:intergenic | 30.0% | |
| CCATTTGTTTGTACTTTGTA+TGG | - | chr4.4:7086057-7086076 | MS.gene030474:intron | 30.0% | |
| GATATATAGAAATGCTACAC+CGG | - | chr4.4:7086361-7086380 | MS.gene030474:intron | 30.0% | |
| TAACATACATACAGATTGCA+TGG | - | chr4.4:7084954-7084973 | MS.gene030474:intron | 30.0% | |
| TGATATTGATGAATAAGGAG+AGG | + | chr4.4:7084778-7084797 | None:intergenic | 30.0% | |
| ! | CACTTAGATGTTTCTTTTCA+TGG | + | chr4.4:7086173-7086192 | None:intergenic | 30.0% |
| ! | CTTATCACCATTAACACTTT+TGG | - | chr4.4:7085406-7085425 | MS.gene030474:CDS | 30.0% |
| ! | TGTATACCCTTTGTTTCTTT+GGG | + | chr4.4:7085477-7085496 | None:intergenic | 30.0% |
| !! | AGCATTGATGGTTAAAAAGA+AGG | + | chr4.4:7085960-7085979 | None:intergenic | 30.0% |
| !! | ATCTAGTTTGTTATGCTTGT+TGG | - | chr4.4:7084832-7084851 | MS.gene030474:intron | 30.0% |
| AACACAAATCCAAGTGTGTT+TGG | + | chr4.4:7086314-7086333 | None:intergenic | 35.0% | |
| AACACACTTGGATTTGTGTT+CGG | - | chr4.4:7086314-7086333 | MS.gene030474:intron | 35.0% | |
| ATACTTACAATGACGAAGAG+AGG | + | chr4.4:7085768-7085787 | None:intergenic | 35.0% | |
| TAACCATCAATGCTGTTATG+TGG | - | chr4.4:7085966-7085985 | MS.gene030474:intron | 35.0% | |
| TTATGCCCCAAAGAAACAAA+GGG | - | chr4.4:7085468-7085487 | MS.gene030474:CDS | 35.0% | |
| TTCAAGAAGAAATCTGCTGA+GGG | - | chr4.4:7085295-7085314 | MS.gene030474:intron | 35.0% | |
| TTCTCTTGCTGAATGTGTTT+GGG | - | chr4.4:7085637-7085656 | MS.gene030474:CDS | 35.0% | |
| TTTATGCCCCAAAGAAACAA+AGG | - | chr4.4:7085467-7085486 | MS.gene030474:CDS | 35.0% | |
| ! | GTATACCCTTTGTTTCTTTG+GGG | + | chr4.4:7085476-7085495 | None:intergenic | 35.0% |
| ! | GTGTATACCCTTTGTTTCTT+TGG | + | chr4.4:7085478-7085497 | None:intergenic | 35.0% |
| !! | CATTTGTTAACAAGTGCTGA+TGG | - | chr4.4:7085087-7085106 | MS.gene030474:intron | 35.0% |
| !! | GTTTCTTTGGGGCATAAATT+AGG | + | chr4.4:7085465-7085484 | None:intergenic | 35.0% |
| !!! | GAATCTTGGGCTTTTGTTTT+CGG | - | chr4.4:7084637-7084656 | MS.gene030474:CDS | 35.0% |
| !!! | GCTTTTGTTTTCGGCATTAT+AGG | - | chr4.4:7084646-7084665 | MS.gene030474:CDS | 35.0% |
| AGGCAACATCATTTCCTTTG+CGG | - | chr4.4:7085145-7085164 | MS.gene030474:CDS | 40.0% | |
| ATACAGATTGCATGGCGATA+TGG | - | chr4.4:7084962-7084981 | MS.gene030474:intron | 40.0% | |
| ATATAGAAATGCTACACCGG+TGG | - | chr4.4:7086364-7086383 | MS.gene030474:intron | 40.0% | |
| ATCAACTCTCTACCTCTCAA+AGG | - | chr4.4:7085677-7085696 | MS.gene030474:CDS | 40.0% | |
| CAAACACATTCAGCAAGAGA+AGG | + | chr4.4:7085638-7085657 | None:intergenic | 40.0% | |
| CTTCAAGAAGAAATCTGCTG+AGG | - | chr4.4:7085294-7085313 | MS.gene030474:intron | 40.0% | |
| CTTCTCTTGCTGAATGTGTT+TGG | - | chr4.4:7085636-7085655 | MS.gene030474:CDS | 40.0% | |
| GCTGTTATGTGGTTCTTCTA+TGG | - | chr4.4:7085977-7085996 | MS.gene030474:intron | 40.0% | |
| TCAACTCTCTACCTCTCAAA+GGG | - | chr4.4:7085678-7085697 | MS.gene030474:CDS | 40.0% | |
| TGGTTACTTACAATGGTGAG+AGG | + | chr4.4:7085175-7085194 | None:intergenic | 40.0% | |
| TGTGTTCGGCATAATTCAGA+TGG | - | chr4.4:7086328-7086347 | MS.gene030474:intron | 40.0% | |
| ! | AACGTCTTGCTATCATAGGA+TGG | - | chr4.4:7085706-7085725 | MS.gene030474:CDS | 40.0% |
| ! | CACTTTTCAGTGCAATGCTT+TGG | - | chr4.4:7085344-7085363 | MS.gene030474:CDS | 40.0% |
| ! | CAGCAAGAGAAGGAGTTTTA+TGG | + | chr4.4:7085628-7085647 | None:intergenic | 40.0% |
| ! | GAACCACATAACAGCATTGA+TGG | + | chr4.4:7085972-7085991 | None:intergenic | 40.0% |
| ! | GCAAAACGTCTTGCTATCAT+AGG | - | chr4.4:7085702-7085721 | MS.gene030474:CDS | 40.0% |
| ! | TTGCTGAATGTGTTTGGGTT+TGG | - | chr4.4:7085642-7085661 | MS.gene030474:CDS | 40.0% |
| !! | CTGAAAAGTGCCACAACATA+AGG | + | chr4.4:7085334-7085353 | None:intergenic | 40.0% |
| !! | GTAGAGAGTTGATAGAAGCA+TGG | + | chr4.4:7085670-7085689 | None:intergenic | 40.0% |
| ATGAAGGGTCAAGAGTTGAG+TGG | - | chr4.4:7086398-7086417 | MS.gene030474:intron | 45.0% | |
| ATGCAGCTACCAAACACACT+TGG | - | chr4.4:7086302-7086321 | MS.gene030474:intron | 45.0% | |
| CATAGTAATCCCTGAGGAGA+AGG | + | chr4.4:7086003-7086022 | None:intergenic | 45.0% | |
| CCATGCAGAGCAAAGTCATA+AGG | - | chr4.4:7085900-7085919 | MS.gene030474:intron | 45.0% | |
| CCTTATGACTTTGCTCTGCA+TGG | + | chr4.4:7085903-7085922 | None:intergenic | 45.0% | |
| CTCAACTCTTGACCCTTCAT+TGG | + | chr4.4:7086398-7086417 | None:intergenic | 45.0% | |
| GAAATCTGCTGAGGGATTTC+AGG | - | chr4.4:7085303-7085322 | MS.gene030474:intron | 45.0% | |
| GTTCGGCATAATTCAGATGG+TGG | - | chr4.4:7086331-7086350 | MS.gene030474:intron | 45.0% | |
| TCAGGCACTTCCTTATGTTG+TGG | - | chr4.4:7085321-7085340 | MS.gene030474:intron | 45.0% | |
| AAATGCTACACCGGTGGTAG+AGG | - | chr4.4:7086370-7086389 | MS.gene030474:intron | 50.0% | |
| AAGGGTCAAGAGTTGAGTGG+TGG | - | chr4.4:7086401-7086420 | MS.gene030474:intron | 50.0% | |
| AGCCCAAGATTCACGAGTCA+TGG | + | chr4.4:7084629-7084648 | None:intergenic | 50.0% | |
| CGGCAACATAGTAATCCCTG+AGG | + | chr4.4:7086009-7086028 | None:intergenic | 50.0% | |
| CTTCTATGGCCTTCTCCTCA+GGG | - | chr4.4:7085991-7086010 | MS.gene030474:intron | 50.0% | |
| GGCCATGACTCGTGAATCTT+GGG | - | chr4.4:7084624-7084643 | MS.gene030474:CDS | 50.0% | |
| TCTTCTATGGCCTTCTCCTC+AGG | - | chr4.4:7085990-7086009 | MS.gene030474:intron | 50.0% | |
| TGGCCATGACTCGTGAATCT+TGG | - | chr4.4:7084623-7084642 | MS.gene030474:CDS | 50.0% | |
| ! | GACGTTTTGCTCCCTTTGAG+AGG | + | chr4.4:7085692-7085711 | None:intergenic | 50.0% |
| ! | TTCATTGGTGCCTCTACCAC+CGG | + | chr4.4:7086383-7086402 | None:intergenic | 50.0% |
| !! | GTGGTAGAGGCACCAATGAA+GGG | - | chr4.4:7086383-7086402 | MS.gene030474:intron | 50.0% |
| TGGTGAGAGGAACACCGCAA+AGG | + | chr4.4:7085162-7085181 | None:intergenic | 55.0% | |
| !! | GGTGGTAGAGGCACCAATGA+AGG | - | chr4.4:7086382-7086401 | MS.gene030474:intron | 55.0% |
| AACGACCCCAATCGTGCAGG+TGG | - | chr4.4:7086452-7086471 | MS.gene030474:CDS | 60.0% | |
| CACCTCCACCTGCACGATTG+GGG | + | chr4.4:7086460-7086479 | None:intergenic | 60.0% | |
| GCACCTCCACCTGCACGATT+GGG | + | chr4.4:7086461-7086480 | None:intergenic | 60.0% | |
| GGAAACGACCCCAATCGTGC+AGG | - | chr4.4:7086449-7086468 | MS.gene030474:intron | 60.0% | |
| GACCCCAATCGTGCAGGTGG+AGG | - | chr4.4:7086455-7086474 | MS.gene030474:CDS | 65.0% | |
| GGCACCTCCACCTGCACGAT+TGG | + | chr4.4:7086462-7086481 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 7084622 | 7086496 | 7084622 | ID=MS.gene030474 |
| chr4.4 | mRNA | 7084622 | 7086496 | 7084622 | ID=MS.gene030474.t1;Parent=MS.gene030474 |
| chr4.4 | exon | 7086451 | 7086496 | 7086451 | ID=MS.gene030474.t1.exon1;Parent=MS.gene030474.t1 |
| chr4.4 | CDS | 7086451 | 7086496 | 7086451 | ID=cds.MS.gene030474.t1;Parent=MS.gene030474.t1 |
| chr4.4 | exon | 7085935 | 7085971 | 7085935 | ID=MS.gene030474.t1.exon2;Parent=MS.gene030474.t1 |
| chr4.4 | CDS | 7085935 | 7085971 | 7085935 | ID=cds.MS.gene030474.t1;Parent=MS.gene030474.t1 |
| chr4.4 | exon | 7085629 | 7085842 | 7085629 | ID=MS.gene030474.t1.exon3;Parent=MS.gene030474.t1 |
| chr4.4 | CDS | 7085629 | 7085842 | 7085629 | ID=cds.MS.gene030474.t1;Parent=MS.gene030474.t1 |
| chr4.4 | exon | 7085339 | 7085500 | 7085339 | ID=MS.gene030474.t1.exon4;Parent=MS.gene030474.t1 |
| chr4.4 | CDS | 7085339 | 7085500 | 7085339 | ID=cds.MS.gene030474.t1;Parent=MS.gene030474.t1 |
| chr4.4 | exon | 7085091 | 7085210 | 7085091 | ID=MS.gene030474.t1.exon5;Parent=MS.gene030474.t1 |
| chr4.4 | CDS | 7085091 | 7085210 | 7085091 | ID=cds.MS.gene030474.t1;Parent=MS.gene030474.t1 |
| chr4.4 | exon | 7084622 | 7084810 | 7084622 | ID=MS.gene030474.t1.exon6;Parent=MS.gene030474.t1 |
| chr4.4 | CDS | 7084622 | 7084810 | 7084622 | ID=cds.MS.gene030474.t1;Parent=MS.gene030474.t1 |
| Gene Sequence |
| Protein sequence |
