Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031844.t1 | XP_003601103.1 | 98.5 | 275 | 4 | 0 | 1 | 275 | 1 | 275 | 1.30E-150 | 542.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031844.t1 | Q9LIG6 | 84.6 | 208 | 32 | 0 | 66 | 273 | 72 | 279 | 5.6e-99 | 362.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031844.t1 | G7J3M0 | 98.5 | 275 | 4 | 0 | 1 | 275 | 1 | 275 | 9.1e-151 | 542.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene022304 | MS.gene031844 | PPI |
| MS.gene031844 | MS.gene61049 | PPI |
| MS.gene069794 | MS.gene031844 | PPI |
| MS.gene038497 | MS.gene031844 | PPI |
| MS.gene25969 | MS.gene031844 | PPI |
| MS.gene83301 | MS.gene031844 | PPI |
| MS.gene009043 | MS.gene031844 | PPI |
| MS.gene70632 | MS.gene031844 | PPI |
| MS.gene031844 | MS.gene009053 | PPI |
| MS.gene29363 | MS.gene031844 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031844.t1 | MTR_3g073070 | 98.545 | 275 | 4 | 0 | 1 | 275 | 1 | 275 | 0.0 | 562 |
| MS.gene031844.t1 | MTR_3g073070 | 95.785 | 261 | 11 | 0 | 1 | 261 | 1 | 261 | 0.0 | 521 |
| MS.gene031844.t1 | MTR_1g069215 | 93.141 | 277 | 17 | 1 | 1 | 275 | 1 | 277 | 3.20e-159 | 444 |
| MS.gene031844.t1 | MTR_2g005900 | 41.053 | 95 | 50 | 3 | 173 | 264 | 58 | 149 | 4.67e-12 | 64.3 |
| MS.gene031844.t1 | MTR_2g036690 | 47.761 | 67 | 33 | 1 | 198 | 264 | 103 | 167 | 5.59e-12 | 63.9 |
| MS.gene031844.t1 | MTR_2g036690 | 47.761 | 67 | 33 | 1 | 198 | 264 | 103 | 167 | 1.08e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031844.t1 | AT3G20970 | 84.615 | 208 | 32 | 0 | 66 | 273 | 72 | 279 | 1.17e-132 | 377 |
| MS.gene031844.t1 | AT1G51390 | 81.429 | 210 | 38 | 1 | 57 | 266 | 59 | 267 | 1.29e-126 | 361 |
| MS.gene031844.t1 | AT3G20970 | 84.768 | 151 | 23 | 0 | 66 | 216 | 72 | 222 | 2.30e-93 | 275 |
| MS.gene031844.t1 | AT5G49940 | 46.269 | 67 | 34 | 1 | 198 | 264 | 97 | 161 | 1.30e-12 | 65.5 |
| MS.gene031844.t1 | AT4G25910 | 47.761 | 67 | 33 | 1 | 198 | 264 | 96 | 160 | 2.03e-12 | 65.9 |
| MS.gene031844.t1 | AT5G49940 | 46.269 | 67 | 34 | 1 | 198 | 264 | 97 | 161 | 3.09e-12 | 65.1 |
Find 71 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAATGATCAAGGAACTTT+TGG | 0.209765 | 3.4:+71963582 | MS.gene031844:CDS |
| TGAAATCTTTGCCGCTATTA+TGG | 0.218248 | 3.4:+71962501 | MS.gene031844:CDS |
| CTCCTTTGTCCGGTGGAAAA+TGG | 0.263576 | 3.4:-71962138 | None:intergenic |
| TACAAATTGTTCTCGTTGCC+TGG | 0.300775 | 3.4:+71962044 | MS.gene031844:CDS |
| CCACGATGCATCTTCCGATT+TGG | 0.310465 | 3.4:-71962464 | None:intergenic |
| TTCATAGCGGAACGAGGGTT+CGG | 0.314773 | 3.4:-71962255 | None:intergenic |
| ATAATAGCGGCAAAGATTTC+AGG | 0.329502 | 3.4:-71962499 | None:intergenic |
| ATCATGAATTGCTGTGTCTT+TGG | 0.335385 | 3.4:-71962575 | None:intergenic |
| ATTATGGATTTCTACTCTTC+CGG | 0.349184 | 3.4:+71962517 | MS.gene031844:CDS |
| GTCGTAATCGTCTTCCTAAT+CGG | 0.363079 | 3.4:-71961972 | None:intergenic |
| AACATAAGAGACTCTGGATT+TGG | 0.370612 | 3.4:-71962189 | None:intergenic |
| GATTTGGAGTGGACTGTGTT+TGG | 0.376256 | 3.4:-71962173 | None:intergenic |
| TCATAGCGGAACGAGGGTTC+GGG | 0.382077 | 3.4:-71962254 | None:intergenic |
| GGAACGAGGGTTCGGGAAAT+CGG | 0.395541 | 3.4:-71962247 | None:intergenic |
| GTGATTAGTCTCTGGTTTGA+GGG | 0.396383 | 3.4:-71962010 | None:intergenic |
| CAAAGGTGTGGAACAAGAAT+TGG | 0.398435 | 3.4:+71964534 | MS.gene031844:CDS |
| TGAGGCGGAGGAAGAGAAAA+AGG | 0.403424 | 3.4:-71962103 | None:intergenic |
| TGTGATTAGTCTCTGGTTTG+AGG | 0.424340 | 3.4:-71962011 | None:intergenic |
| TTCAGAGTCACCGAAGAACT+TGG | 0.442159 | 3.4:-71964017 | None:intergenic |
| GTGAATAATGTCGGTGGTGA+GGG | 0.452534 | 3.4:+71961939 | None:intergenic |
| AGATTATTGTGATTAGTCTC+TGG | 0.463457 | 3.4:-71962018 | None:intergenic |
| TAGTGGCTGCCCAAGTTCTT+CGG | 0.469327 | 3.4:+71964007 | MS.gene031844:CDS |
| GTCTAGAAAGAGTGGTTCAC+CGG | 0.487455 | 3.4:-71962536 | None:intergenic |
| TCTTCGGTGACTCTGAAGTC+AGG | 0.490374 | 3.4:+71964023 | MS.gene031844:CDS |
| GAAACGACGGTGTTGTGCCC+AGG | 0.492397 | 3.4:-71962062 | None:intergenic |
| GGTGGGGACATTGTATATTG+TGG | 0.499614 | 3.4:+71963637 | MS.gene031844:CDS |
| AGAAGGAAATGGTGAGGCGG+AGG | 0.506688 | 3.4:-71962115 | None:intergenic |
| AGAATTGGATGGCGAGGAAG+AGG | 0.507801 | 3.4:+71964549 | MS.gene031844:CDS |
| TGAAACAGTTGCAATGATCA+AGG | 0.511525 | 3.4:+71963573 | MS.gene031844:CDS |
| GTGGAAAATGGAGAAGGAAA+TGG | 0.515300 | 3.4:-71962126 | None:intergenic |
| AAACATAGTCCTCCTTTGTC+CGG | 0.524701 | 3.4:-71962148 | None:intergenic |
| GAAGAGGAAGCAGCTTTAAG+TGG | 0.530262 | 3.4:+71964565 | MS.gene031844:CDS |
| GTGAAAATTGATTTAGCGAG+AGG | 0.538554 | 3.4:-71962282 | None:intergenic |
| GGATGAAACATAAGAGACTC+TGG | 0.539372 | 3.4:-71962195 | None:intergenic |
| ACAAATTGTTCTCGTTGCCT+GGG | 0.539498 | 3.4:+71962045 | MS.gene031844:CDS |
| ACATCCATGACAGGTTTACC+AGG | 0.541119 | 3.4:-71962216 | None:intergenic |
| CGACCAACTGTACAAGATGA+TGG | 0.541545 | 3.4:+71963616 | MS.gene031844:CDS |
| AATTGCTGTGTCTTTGGAAG+CGG | 0.555636 | 3.4:-71962569 | None:intergenic |
| CGTGAATAATGTCGGTGGTG+AGG | 0.563248 | 3.4:+71961938 | None:intergenic |
| ATCGTCAAACTTAAAATGCA+AGG | 0.563819 | 3.4:+71963978 | MS.gene031844:CDS |
| CAACTGTACAAGATGATGGT+GGG | 0.564735 | 3.4:+71963620 | MS.gene031844:CDS |
| TTGCTGCATTTACAGGTCAA+AGG | 0.565990 | 3.4:+71964517 | MS.gene031844:intron |
| CCACCATCATCTTGTACAGT+TGG | 0.572483 | 3.4:-71963619 | None:intergenic |
| GAGTCTCTTATGTTTCATCC+TGG | 0.574002 | 3.4:+71962198 | MS.gene031844:CDS |
| GGTAAACCTGTCATGGATGT+TGG | 0.587174 | 3.4:+71962219 | MS.gene031844:CDS |
| TCATCCTGGTAAACCTGTCA+TGG | 0.592000 | 3.4:+71962212 | MS.gene031844:CDS |
| CAAATCGGAAGATGCATCGT+GGG | 0.592355 | 3.4:+71962465 | MS.gene031844:CDS |
| GCTTGAGAGTCTAGAAAGAG+TGG | 0.594156 | 3.4:-71962544 | None:intergenic |
| AACTGTACAAGATGATGGTG+GGG | 0.603309 | 3.4:+71963621 | MS.gene031844:CDS |
| GCGCTACCAACATCCATGAC+AGG | 0.609183 | 3.4:-71962225 | None:intergenic |
| TCAGAGTCACCGAAGAACTT+GGG | 0.610880 | 3.4:-71964016 | None:intergenic |
| TGAATAATGTCGGTGGTGAG+GGG | 0.610912 | 3.4:+71961940 | None:intergenic |
| TGTCCGGTGGAAAATGGAGA+AGG | 0.612110 | 3.4:-71962132 | None:intergenic |
| CATAGTCCTCCTTTGTCCGG+TGG | 0.613263 | 3.4:-71962145 | None:intergenic |
| AAAATGCAAGGAGCGTGTAG+TGG | 0.619177 | 3.4:+71963990 | MS.gene031844:CDS |
| CCAACTGTACAAGATGATGG+TGG | 0.622834 | 3.4:+71963619 | MS.gene031844:CDS |
| GCATTTACAGGTCAAAGGTG+TGG | 0.632082 | 3.4:+71964522 | MS.gene031844:intron |
| TGGAGAAGGAAATGGTGAGG+CGG | 0.634856 | 3.4:-71962118 | None:intergenic |
| AAGAGACTCTGGATTTGGAG+TGG | 0.639473 | 3.4:-71962184 | None:intergenic |
| GGAGAATTCATAGCGGAACG+AGG | 0.644818 | 3.4:-71962261 | None:intergenic |
| GGAACAAGAATTGGATGGCG+AGG | 0.646815 | 3.4:+71964543 | MS.gene031844:CDS |
| GAGAATTCATAGCGGAACGA+GGG | 0.651131 | 3.4:-71962260 | None:intergenic |
| CCAAATCGGAAGATGCATCG+TGG | 0.660421 | 3.4:+71962464 | MS.gene031844:CDS |
| TTAGGAAGACGATTACGACT+AGG | 0.667897 | 3.4:+71961976 | MS.gene031844:CDS |
| AGAGTAGAAATCCATAATAG+CGG | 0.670498 | 3.4:-71962512 | None:intergenic |
| AAATGGAGAAGGAAATGGTG+AGG | 0.682646 | 3.4:-71962121 | None:intergenic |
| CAGATCGTGAATAATGTCGG+TGG | 0.693370 | 3.4:+71961933 | None:intergenic |
| GGTGTGGAACAAGAATTGGA+TGG | 0.704531 | 3.4:+71964538 | MS.gene031844:CDS |
| GCTGATGCATTATGTACCTG+AGG | 0.715793 | 3.4:+71964058 | MS.gene031844:CDS |
| TGGTTGCGAGGTTGAAACGA+CGG | 0.733707 | 3.4:-71962075 | None:intergenic |
| AGCGAGAGGAGAATTCATAG+CGG | 0.791927 | 3.4:-71962268 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATGAAATTTAAGTAAA+AGG | - | chr3.4:71962663-71962682 | None:intergenic | 10.0% |
| !! | ATACAAATTTAAGAAATGAA+AGG | - | chr3.4:71962371-71962390 | None:intergenic | 15.0% |
| !! | ATTTGATAAATATCATTAGT+TGG | - | chr3.4:71962901-71962920 | None:intergenic | 15.0% |
| !! | CTTGTAATTTAATTATTGTT+TGG | - | chr3.4:71962948-71962967 | None:intergenic | 15.0% |
| !! | GTTTCTCAATATAATATAAT+TGG | - | chr3.4:71964481-71964500 | None:intergenic | 15.0% |
| !!! | ATTATGTTTTTTTTATTTGC+AGG | - | chr3.4:71963199-71963218 | None:intergenic | 15.0% |
| !!! | ATTTGTAATATTCTGTTTTT+AGG | - | chr3.4:71963089-71963108 | None:intergenic | 15.0% |
| !!! | TTATGTTTTTTTTATTTGCA+GGG | - | chr3.4:71963198-71963217 | None:intergenic | 15.0% |
| !!! | TTCTTTTTAACAAAAAAATC+AGG | + | chr3.4:71963343-71963362 | MS.gene031844:intron | 15.0% |
| !!! | TTTTTTTTTTTAATTGTTGC+AGG | + | chr3.4:71962400-71962419 | MS.gene031844:intron | 15.0% |
| !! | ATTGGACAATTCATATAAAA+TGG | - | chr3.4:71964463-71964482 | None:intergenic | 20.0% |
| !! | TAATGTTGTACATTATAGAA+TGG | + | chr3.4:71963908-71963927 | MS.gene031844:intron | 20.0% |
| !! | TAGAATGTTAGTAAATTAGT+GGG | - | chr3.4:71963059-71963078 | None:intergenic | 20.0% |
| !! | TAGTTTATGATAGAACATTA+TGG | + | chr3.4:71962715-71962734 | MS.gene031844:intron | 20.0% |
| !! | TGCAAATCTTATAAGTTAAT+TGG | - | chr3.4:71964273-71964292 | None:intergenic | 20.0% |
| !! | TTAGAATGTTAGTAAATTAG+TGG | - | chr3.4:71963060-71963079 | None:intergenic | 20.0% |
| !! | TTGATTACCGTAAATATAAA+TGG | - | chr3.4:71964134-71964153 | None:intergenic | 20.0% |
| !!! | ATTTTTTAAAGAGAAACCTA+TGG | - | chr3.4:71963440-71963459 | None:intergenic | 20.0% |
| !!! | TATGTTTTTTTTATTTGCAG+GGG | - | chr3.4:71963197-71963216 | None:intergenic | 20.0% |
| !!! | TGTATTTGCTTTTTATATTG+TGG | + | chr3.4:71963935-71963954 | MS.gene031844:intron | 20.0% |
| !!! | TTATTTAAAGCAGCATTAAT+AGG | + | chr3.4:71964430-71964449 | MS.gene031844:intron | 20.0% |
| !!! | TTTTAACAAAAAAATCAGGA+GGG | + | chr3.4:71963347-71963366 | MS.gene031844:intron | 20.0% |
| !!! | TTTTTAACAAAAAAATCAGG+AGG | + | chr3.4:71963346-71963365 | MS.gene031844:intron | 20.0% |
| ! | AAACCCAAATAGAAAAAAAG+AGG | - | chr3.4:71963691-71963710 | None:intergenic | 25.0% |
| ! | AAATAGAATAAGAGATTGAG+AGG | + | chr3.4:71963220-71963239 | MS.gene031844:intron | 25.0% |
| ! | AACCCAAATAGAAAAAAAGA+GGG | - | chr3.4:71963690-71963709 | None:intergenic | 25.0% |
| ! | AGAGTATAGATTATTCATTG+AGG | - | chr3.4:71963725-71963744 | None:intergenic | 25.0% |
| ! | ATATAAATGGAAACAGCAAA+TGG | - | chr3.4:71964121-71964140 | None:intergenic | 25.0% |
| ! | TAATCAAATTGATTGGAAAC+TGG | + | chr3.4:71964147-71964166 | MS.gene031844:intron | 25.0% |
| ! | TTCAAGATGTCAAAACTAAA+TGG | + | chr3.4:71963519-71963538 | MS.gene031844:intron | 25.0% |
| ! | TTTAACAAAAAAATCAGGAG+GGG | + | chr3.4:71963348-71963367 | MS.gene031844:intron | 25.0% |
| ! | TTTACGGTAATCAAATTGAT+TGG | + | chr3.4:71964140-71964159 | MS.gene031844:intron | 25.0% |
| !! | AAATCAATTTTCACGATTGA+CGG | + | chr3.4:71962291-71962310 | MS.gene031844:CDS | 25.0% |
| !! | AAGTCTAAATACTTTTCCAT+AGG | + | chr3.4:71963421-71963440 | MS.gene031844:intron | 25.0% |
| !! | AAGTTTGCATTATCATTTTG+TGG | + | chr3.4:71964085-71964104 | MS.gene031844:intron | 25.0% |
| !! | GCTGTTTCCATTTATATTTA+CGG | + | chr3.4:71964124-71964143 | MS.gene031844:intron | 25.0% |
| !! | TTTAGTTTAGTCTCATTTCA+AGG | + | chr3.4:71962630-71962649 | MS.gene031844:intron | 25.0% |
| !!! | ATGGAAAAGTATTTAGACTT+GGG | - | chr3.4:71963421-71963440 | None:intergenic | 25.0% |
| !!! | ATTTAGTTTTGACATCTTGA+AGG | - | chr3.4:71963520-71963539 | None:intergenic | 25.0% |
| !!! | TATGGAAAAGTATTTAGACT+TGG | - | chr3.4:71963422-71963441 | None:intergenic | 25.0% |
| AATCAATCGTGTAAGACAAA+TGG | - | chr3.4:71964309-71964328 | None:intergenic | 30.0% | |
| AGAGTAGAAATCCATAATAG+CGG | - | chr3.4:71962515-71962534 | None:intergenic | 30.0% | |
| ATCGTCAAACTTAAAATGCA+AGG | + | chr3.4:71963978-71963997 | MS.gene031844:CDS | 30.0% | |
| ATTATGGATTTCTACTCTTC+CGG | + | chr3.4:71962517-71962536 | MS.gene031844:CDS | 30.0% | |
| CAAATAGAAAAAAAGAGGGA+GGG | - | chr3.4:71963686-71963705 | None:intergenic | 30.0% | |
| GCAATATCAACATAGAAATG+AGG | - | chr3.4:71962610-71962629 | None:intergenic | 30.0% | |
| TAGTCTCATTTCAAGGAATT+TGG | + | chr3.4:71962637-71962656 | MS.gene031844:intron | 30.0% | |
| ! | GATTTCGAGGGTATATTAAA+AGG | + | chr3.4:71964234-71964253 | MS.gene031844:intron | 30.0% |
| ! | TTTTGTCACTGTTACCAAAT+CGG | + | chr3.4:71962450-71962469 | MS.gene031844:CDS | 30.0% |
| !! | AGATTATTGTGATTAGTCTC+TGG | - | chr3.4:71962021-71962040 | None:intergenic | 30.0% |
| !! | CATTCTTAAGTTGATTTCGA+GGG | + | chr3.4:71964222-71964241 | MS.gene031844:intron | 30.0% |
| !!! | CTCCCTCTTTTTTTCTATTT+GGG | + | chr3.4:71963685-71963704 | MS.gene031844:intron | 30.0% |
| !!! | GTATGAGATTTTTCTAGCTT+AGG | + | chr3.4:71963491-71963510 | MS.gene031844:intron | 30.0% |
| AACATAAGAGACTCTGGATT+TGG | - | chr3.4:71962192-71962211 | None:intergenic | 35.0% | |
| AATCAACTTAAGAATGCCAC+AGG | - | chr3.4:71964218-71964237 | None:intergenic | 35.0% | |
| ACAGAATAGAAAGACCAAGT+TGG | + | chr3.4:71963747-71963766 | MS.gene031844:intron | 35.0% | |
| AGATAAAGTTCAACCCAACT+TGG | - | chr3.4:71963764-71963783 | None:intergenic | 35.0% | |
| ATAATAGCGGCAAAGATTTC+AGG | - | chr3.4:71962502-71962521 | None:intergenic | 35.0% | |
| ATCATGAATTGCTGTGTCTT+TGG | - | chr3.4:71962578-71962597 | None:intergenic | 35.0% | |
| ATTTGCAGGGGCAATTAATA+AGG | - | chr3.4:71963185-71963204 | None:intergenic | 35.0% | |
| CAGAATAGAAAGACCAAGTT+GGG | + | chr3.4:71963748-71963767 | MS.gene031844:intron | 35.0% | |
| CCAAATAGAAAAAAAGAGGG+AGG | - | chr3.4:71963687-71963706 | None:intergenic | 35.0% | |
| TACACGTAGTTCATTACAGA+AGG | - | chr3.4:71964190-71964209 | None:intergenic | 35.0% | |
| TAGTATGCACAATGACAGAT+AGG | - | chr3.4:71964365-71964384 | None:intergenic | 35.0% | |
| TGAAACAGTTGCAATGATCA+AGG | + | chr3.4:71963573-71963592 | MS.gene031844:CDS | 35.0% | |
| TGAAATCTTTGCCGCTATTA+TGG | + | chr3.4:71962501-71962520 | MS.gene031844:CDS | 35.0% | |
| ! | GGAATTACTCGTGTTTTCTT+TGG | + | chr3.4:71962421-71962440 | MS.gene031844:intron | 35.0% |
| ! | GTGAAAATTGATTTAGCGAG+AGG | - | chr3.4:71962285-71962304 | None:intergenic | 35.0% |
| ! | TGCAATGATCAAGGAACTTT+TGG | + | chr3.4:71963582-71963601 | MS.gene031844:CDS | 35.0% |
| ! | TTTTAGTGACCCAAGTTCTT+GGG | + | chr3.4:71963467-71963486 | MS.gene031844:intron | 35.0% |
| !! | ACATTGAAGGAGTACTAACT+AGG | + | chr3.4:71962996-71963015 | MS.gene031844:intron | 35.0% |
| !! | GCATTCTTAAGTTGATTTCG+AGG | + | chr3.4:71964221-71964240 | MS.gene031844:intron | 35.0% |
| !! | TAATGCAAACTTGTTACCTC+AGG | - | chr3.4:71964077-71964096 | None:intergenic | 35.0% |
| !! | TGTGGTTTTCTCTAGAGATA+CGG | + | chr3.4:71963953-71963972 | MS.gene031844:intron | 35.0% |
| !!! | CCTCCCTCTTTTTTTCTATT+TGG | + | chr3.4:71963684-71963703 | MS.gene031844:intron | 35.0% |
| !!! | TAGTTTTGACATCTTGAAGG+TGG | - | chr3.4:71963517-71963536 | None:intergenic | 35.0% |
| AAAAGTCCTGACCTCAATTC+AGG | + | chr3.4:71962816-71962835 | MS.gene031844:intron | 40.0% | |
| AAACATAGTCCTCCTTTGTC+CGG | - | chr3.4:71962151-71962170 | None:intergenic | 40.0% | |
| AAACCTTAGTCCACTAAGTG+GGG | - | chr3.4:71962764-71962783 | None:intergenic | 40.0% | |
| AAATACAAAGCCTGACTGGT+GGG | + | chr3.4:71963264-71963283 | MS.gene031844:intron | 40.0% | |
| AAATGGAGAAGGAAATGGTG+AGG | - | chr3.4:71962124-71962143 | None:intergenic | 40.0% | |
| AAGGAAATACAAAGCCTGAC+TGG | + | chr3.4:71963260-71963279 | MS.gene031844:intron | 40.0% | |
| ACAAATTGTTCTCGTTGCCT+GGG | + | chr3.4:71962045-71962064 | MS.gene031844:CDS | 40.0% | |
| ACAAGTCTATCGTCACAAGT+AGG | + | chr3.4:71962963-71962982 | MS.gene031844:intron | 40.0% | |
| ACTTAAGAATGCCACAGGAA+AGG | - | chr3.4:71964213-71964232 | None:intergenic | 40.0% | |
| ATAGAAAAAAAGAGGGAGGG+AGG | - | chr3.4:71963683-71963702 | None:intergenic | 40.0% | |
| ATCTCATACTCCCAAGAACT+TGG | - | chr3.4:71963480-71963499 | None:intergenic | 40.0% | |
| ATGCTTACCTGTTTGCATAC+AGG | + | chr3.4:71963543-71963562 | MS.gene031844:intron | 40.0% | |
| CAAACCTTAGTCCACTAAGT+GGG | - | chr3.4:71962765-71962784 | None:intergenic | 40.0% | |
| CGTAGTTCATTACAGAAGGA+CGG | - | chr3.4:71964186-71964205 | None:intergenic | 40.0% | |
| GAATCATCCTGTATGCAAAC+AGG | - | chr3.4:71963553-71963572 | None:intergenic | 40.0% | |
| GAGTCTCTTATGTTTCATCC+TGG | + | chr3.4:71962198-71962217 | MS.gene031844:CDS | 40.0% | |
| GCAAGTTTCCAAGACAATGT+TGG | + | chr3.4:71963873-71963892 | MS.gene031844:intron | 40.0% | |
| GGATGAAACATAAGAGACTC+TGG | - | chr3.4:71962198-71962217 | None:intergenic | 40.0% | |
| GGCTGTAGATTTGAAAGGAA+AGG | + | chr3.4:71963241-71963260 | MS.gene031844:intron | 40.0% | |
| GGGATGGATGATTGATGAAT+GGG | + | chr3.4:71963284-71963303 | MS.gene031844:intron | 40.0% | |
| GTCGTAATCGTCTTCCTAAT+CGG | - | chr3.4:71961975-71961994 | None:intergenic | 40.0% | |
| GTGGAAAATGGAGAAGGAAA+TGG | - | chr3.4:71962129-71962148 | None:intergenic | 40.0% | |
| TACAAATTGTTCTCGTTGCC+TGG | + | chr3.4:71962044-71962063 | MS.gene031844:CDS | 40.0% | |
| TCAAACCTTAGTCCACTAAG+TGG | - | chr3.4:71962766-71962785 | None:intergenic | 40.0% | |
| TCTCATACTCCCAAGAACTT+GGG | - | chr3.4:71963479-71963498 | None:intergenic | 40.0% | |
| TGAGAGGCTGTAGATTTGAA+AGG | + | chr3.4:71963236-71963255 | MS.gene031844:intron | 40.0% | |
| TGCCTCGATTCAAAAACCAT+TGG | + | chr3.4:71963380-71963399 | MS.gene031844:intron | 40.0% | |
| TGGGATGGATGATTGATGAA+TGG | + | chr3.4:71963283-71963302 | MS.gene031844:intron | 40.0% | |
| TGTCAACACCAACATTGTCT+TGG | - | chr3.4:71963884-71963903 | None:intergenic | 40.0% | |
| TTAGACTTGGGAGATACAAG+AGG | - | chr3.4:71963409-71963428 | None:intergenic | 40.0% | |
| TTAGGAAGACGATTACGACT+AGG | + | chr3.4:71961976-71961995 | MS.gene031844:CDS | 40.0% | |
| TTGCTGCATTTACAGGTCAA+AGG | + | chr3.4:71964517-71964536 | MS.gene031844:intron | 40.0% | |
| ! | AACTGTACAAGATGATGGTG+GGG | + | chr3.4:71963621-71963640 | MS.gene031844:CDS | 40.0% |
| ! | AATGGTTTTTGAATCGAGGC+AGG | - | chr3.4:71963381-71963400 | None:intergenic | 40.0% |
| ! | AATTGCTGTGTCTTTGGAAG+CGG | - | chr3.4:71962572-71962591 | None:intergenic | 40.0% |
| ! | ATGGTTTTTGAATCGAGGCA+GGG | - | chr3.4:71963380-71963399 | None:intergenic | 40.0% |
| ! | CAAAGGTGTGGAACAAGAAT+TGG | + | chr3.4:71964534-71964553 | MS.gene031844:CDS | 40.0% |
| ! | CAACTGTACAAGATGATGGT+GGG | + | chr3.4:71963620-71963639 | MS.gene031844:CDS | 40.0% |
| ! | CTTTTAGTGACCCAAGTTCT+TGG | + | chr3.4:71963466-71963485 | MS.gene031844:intron | 40.0% |
| ! | TGCCAATGGTTTTTGAATCG+AGG | - | chr3.4:71963385-71963404 | None:intergenic | 40.0% |
| ! | TTTCCTTCTCCATTTTCCAC+CGG | + | chr3.4:71962129-71962148 | MS.gene031844:CDS | 40.0% |
| !! | AGGAAGAGAAAAAGGCATTG+TGG | - | chr3.4:71962098-71962117 | None:intergenic | 40.0% |
| !! | GTGATTAGTCTCTGGTTTGA+GGG | - | chr3.4:71962013-71962032 | None:intergenic | 40.0% |
| !! | GTGGTTTTCTCTAGAGATAC+GGG | + | chr3.4:71963954-71963973 | MS.gene031844:intron | 40.0% |
| !! | TGGTTTTCTCTAGAGATACG+GGG | + | chr3.4:71963955-71963974 | MS.gene031844:intron | 40.0% |
| !! | TGTGATTAGTCTCTGGTTTG+AGG | - | chr3.4:71962014-71962033 | None:intergenic | 40.0% |
| AACTACGTGTACCTTTCCTG+TGG | + | chr3.4:71964199-71964218 | MS.gene031844:intron | 45.0% | |
| AAGAGACTCTGGATTTGGAG+TGG | - | chr3.4:71962187-71962206 | None:intergenic | 45.0% | |
| ACATCCATGACAGGTTTACC+AGG | - | chr3.4:71962219-71962238 | None:intergenic | 45.0% | |
| AGCGAGAGGAGAATTCATAG+CGG | - | chr3.4:71962271-71962290 | None:intergenic | 45.0% | |
| CAAATCGGAAGATGCATCGT+GGG | + | chr3.4:71962465-71962484 | MS.gene031844:CDS | 45.0% | |
| CCACCATCATCTTGTACAGT+TGG | - | chr3.4:71963622-71963641 | None:intergenic | 45.0% | |
| CGACCAACTGTACAAGATGA+TGG | + | chr3.4:71963616-71963635 | MS.gene031844:CDS | 45.0% | |
| GAAATACAAAGCCTGACTGG+TGG | + | chr3.4:71963263-71963282 | MS.gene031844:intron | 45.0% | |
| GAGATACAAGAGGATGCCAA+TGG | - | chr3.4:71963399-71963418 | None:intergenic | 45.0% | |
| GCATTTACAGGTCAAAGGTG+TGG | + | chr3.4:71964522-71964541 | MS.gene031844:intron | 45.0% | |
| GCTGATGCATTATGTACCTG+AGG | + | chr3.4:71964058-71964077 | MS.gene031844:CDS | 45.0% | |
| GCTTGAGAGTCTAGAAAGAG+TGG | - | chr3.4:71962547-71962566 | None:intergenic | 45.0% | |
| GGTAAACCTGTCATGGATGT+TGG | + | chr3.4:71962219-71962238 | MS.gene031844:CDS | 45.0% | |
| GGTGGGGACATTGTATATTG+TGG | + | chr3.4:71963637-71963656 | MS.gene031844:CDS | 45.0% | |
| GGTGTGGAACAAGAATTGGA+TGG | + | chr3.4:71964538-71964557 | MS.gene031844:CDS | 45.0% | |
| GTAAATGCAGCAAGCAGCAT+TGG | - | chr3.4:71964510-71964529 | None:intergenic | 45.0% | |
| GTCTAGAAAGAGTGGTTCAC+CGG | - | chr3.4:71962539-71962558 | None:intergenic | 45.0% | |
| TACAGAAGGACGGTAAGTTG+AGG | - | chr3.4:71964176-71964195 | None:intergenic | 45.0% | |
| TCAGAGTCACCGAAGAACTT+GGG | - | chr3.4:71964019-71964038 | None:intergenic | 45.0% | |
| TCATCCTGGTAAACCTGTCA+TGG | + | chr3.4:71962212-71962231 | MS.gene031844:CDS | 45.0% | |
| TGCACAATGACAGATAGGTC+TGG | - | chr3.4:71964360-71964379 | None:intergenic | 45.0% | |
| TTCAGAGTCACCGAAGAACT+TGG | - | chr3.4:71964020-71964039 | None:intergenic | 45.0% | |
| ! | AAAATGCAAGGAGCGTGTAG+TGG | + | chr3.4:71963990-71964009 | MS.gene031844:CDS | 45.0% |
| ! | AGGGGTAGTGTTTTCCGATT+AGG | + | chr3.4:71961958-71961977 | MS.gene031844:CDS | 45.0% |
| ! | ATGCTGCTTGCTGCATTTAC+AGG | + | chr3.4:71964510-71964529 | MS.gene031844:intron | 45.0% |
| ! | CCAACTGTACAAGATGATGG+TGG | + | chr3.4:71963619-71963638 | MS.gene031844:CDS | 45.0% |
| ! | GAGAATTCATAGCGGAACGA+GGG | - | chr3.4:71962263-71962282 | None:intergenic | 45.0% |
| ! | TGGTTTTTGAATCGAGGCAG+GGG | - | chr3.4:71963379-71963398 | None:intergenic | 45.0% |
| !! | AAAAAGGCATTGTGGTTGCG+AGG | - | chr3.4:71962090-71962109 | None:intergenic | 45.0% |
| !! | GAAGAGGAAGCAGCTTTAAG+TGG | + | chr3.4:71964565-71964584 | MS.gene031844:CDS | 45.0% |
| !! | GATTTGGAGTGGACTGTGTT+TGG | - | chr3.4:71962176-71962195 | None:intergenic | 45.0% |
| !!! | AAATTTATCATAATTTTTTT+AGG | + | chr3.4:71963105-71963124 | MS.gene031844:intron | 5.0% |
| AATCATCCATCCCACCAGTC+AGG | - | chr3.4:71963277-71963296 | None:intergenic | 50.0% | |
| AGAATTGGATGGCGAGGAAG+AGG | + | chr3.4:71964549-71964568 | MS.gene031844:CDS | 50.0% | |
| AGAGAGAGAGAGAGAGAGAG+AGG | - | chr3.4:71962321-71962340 | None:intergenic | 50.0% | |
| AGGCAGCTGAGAGACATTGA+AGG | + | chr3.4:71962983-71963002 | MS.gene031844:intron | 50.0% | |
| CCAAATCGGAAGATGCATCG+TGG | + | chr3.4:71962464-71962483 | MS.gene031844:CDS | 50.0% | |
| CCACGATGCATCTTCCGATT+TGG | - | chr3.4:71962467-71962486 | None:intergenic | 50.0% | |
| CTCCTTTGTCCGGTGGAAAA+TGG | - | chr3.4:71962141-71962160 | None:intergenic | 50.0% | |
| CTTAGTCCACTAAGTGGGGT+CGG | - | chr3.4:71962760-71962779 | None:intergenic | 50.0% | |
| GAGAGAGAGAGAGAGAGAGA+GGG | - | chr3.4:71962322-71962341 | None:intergenic | 50.0% | |
| GGAACAAGAATTGGATGGCG+AGG | + | chr3.4:71964543-71964562 | MS.gene031844:CDS | 50.0% | |
| TAGTGGCTGCCCAAGTTCTT+CGG | + | chr3.4:71964007-71964026 | MS.gene031844:CDS | 50.0% | |
| TCCTGACCTCAATTCAGGTG+CGG | + | chr3.4:71962821-71962840 | MS.gene031844:intron | 50.0% | |
| TGAGGCGGAGGAAGAGAAAA+AGG | - | chr3.4:71962106-71962125 | None:intergenic | 50.0% | |
| TGGAGAAGGAAATGGTGAGG+CGG | - | chr3.4:71962121-71962140 | None:intergenic | 50.0% | |
| TGGTTGCGAGGTTGAAACGA+CGG | - | chr3.4:71962078-71962097 | None:intergenic | 50.0% | |
| TGTCCGGTGGAAAATGGAGA+AGG | - | chr3.4:71962135-71962154 | None:intergenic | 50.0% | |
| ! | CATTTTCCACCGGACAAAGG+AGG | + | chr3.4:71962139-71962158 | MS.gene031844:CDS | 50.0% |
| ! | CTCCATTTTCCACCGGACAA+AGG | + | chr3.4:71962136-71962155 | MS.gene031844:CDS | 50.0% |
| ! | GGAGAATTCATAGCGGAACG+AGG | - | chr3.4:71962264-71962283 | None:intergenic | 50.0% |
| ! | TTCATAGCGGAACGAGGGTT+CGG | - | chr3.4:71962258-71962277 | None:intergenic | 50.0% |
| !! | TCTTCGGTGACTCTGAAGTC+AGG | + | chr3.4:71964023-71964042 | MS.gene031844:CDS | 50.0% |
| ACAAAGCCTGACTGGTGGGA+TGG | + | chr3.4:71963268-71963287 | MS.gene031844:intron | 55.0% | |
| ACTAAGTGGGGTCGGCTACA+TGG | - | chr3.4:71962752-71962771 | None:intergenic | 55.0% | |
| AGAAGGAAATGGTGAGGCGG+AGG | - | chr3.4:71962118-71962137 | None:intergenic | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | + | chr3.4:71962751-71962770 | MS.gene031844:intron | 55.0% | |
| CATAGTCCTCCTTTGTCCGG+TGG | - | chr3.4:71962148-71962167 | None:intergenic | 55.0% | |
| GCGCTACCAACATCCATGAC+AGG | - | chr3.4:71962228-71962247 | None:intergenic | 55.0% | |
| GGAACGAGGGTTCGGGAAAT+CGG | - | chr3.4:71962250-71962269 | None:intergenic | 55.0% | |
| GGGAGGGAGGAGAGAACTTA+CGG | - | chr3.4:71963670-71963689 | None:intergenic | 55.0% | |
| TCCGCACCTGAATTGAGGTC+AGG | - | chr3.4:71962825-71962844 | None:intergenic | 55.0% | |
| ! | TCATAGCGGAACGAGGGTTC+GGG | - | chr3.4:71962257-71962276 | None:intergenic | 55.0% |
| !! | CGACCCCACTTAGTGGACTA+AGG | + | chr3.4:71962758-71962777 | MS.gene031844:intron | 55.0% |
| AGCCAGGATTGGGGAACTGG+GGG | + | chr3.4:71962844-71962863 | MS.gene031844:intron | 60.0% | |
| ATCCCCCAGTTCCCCAATCC+TGG | - | chr3.4:71962849-71962868 | None:intergenic | 60.0% | |
| CTCAATTCAGGTGCGGAGCC+AGG | + | chr3.4:71962828-71962847 | MS.gene031844:intron | 60.0% | |
| CTGGCTCCGCACCTGAATTG+AGG | - | chr3.4:71962830-71962849 | None:intergenic | 60.0% | |
| GAGCCAGGATTGGGGAACTG+GGG | + | chr3.4:71962843-71962862 | MS.gene031844:intron | 60.0% | |
| GGAGCCAGGATTGGGGAACT+GGG | + | chr3.4:71962842-71962861 | MS.gene031844:intron | 60.0% | |
| TCAGGTGCGGAGCCAGGATT+GGG | + | chr3.4:71962834-71962853 | MS.gene031844:intron | 60.0% | |
| TTCAGGTGCGGAGCCAGGAT+TGG | + | chr3.4:71962833-71962852 | MS.gene031844:intron | 60.0% | |
| !! | GAAACGACGGTGTTGTGCCC+AGG | - | chr3.4:71962065-71962084 | None:intergenic | 60.0% |
| CAGGTGCGGAGCCAGGATTG+GGG | + | chr3.4:71962835-71962854 | MS.gene031844:intron | 65.0% | |
| CGGAGCCAGGATTGGGGAAC+TGG | + | chr3.4:71962841-71962860 | MS.gene031844:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 71961946 | 71964600 | 71961946 | ID=MS.gene031844 |
| chr3.4 | mRNA | 71961946 | 71964600 | 71961946 | ID=MS.gene031844.t1;Parent=MS.gene031844 |
| chr3.4 | exon | 71961946 | 71962312 | 71961946 | ID=MS.gene031844.t1.exon1;Parent=MS.gene031844.t1 |
| chr3.4 | CDS | 71961946 | 71962312 | 71961946 | ID=cds.MS.gene031844.t1;Parent=MS.gene031844.t1 |
| chr3.4 | exon | 71962422 | 71962597 | 71962422 | ID=MS.gene031844.t1.exon2;Parent=MS.gene031844.t1 |
| chr3.4 | CDS | 71962422 | 71962597 | 71962422 | ID=cds.MS.gene031844.t1;Parent=MS.gene031844.t1 |
| chr3.4 | exon | 71963565 | 71963668 | 71963565 | ID=MS.gene031844.t1.exon3;Parent=MS.gene031844.t1 |
| chr3.4 | CDS | 71963565 | 71963668 | 71963565 | ID=cds.MS.gene031844.t1;Parent=MS.gene031844.t1 |
| chr3.4 | exon | 71963968 | 71964079 | 71963968 | ID=MS.gene031844.t1.exon4;Parent=MS.gene031844.t1 |
| chr3.4 | CDS | 71963968 | 71964079 | 71963968 | ID=cds.MS.gene031844.t1;Parent=MS.gene031844.t1 |
| chr3.4 | exon | 71964532 | 71964600 | 71964532 | ID=MS.gene031844.t1.exon5;Parent=MS.gene031844.t1 |
| chr3.4 | CDS | 71964532 | 71964600 | 71964532 | ID=cds.MS.gene031844.t1;Parent=MS.gene031844.t1 |
| Gene Sequence |
| Protein sequence |
