AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene009053

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene009053.t1 MTR_3g077720 87.805 164 20 0 1 164 1 164 3.45e-106 300
MS.gene009053.t1 MTR_3g077730 82.443 131 21 1 32 160 5 135 1.20e-72 215
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene009053.t1 AT4G22220 69.935 153 44 2 5 156 7 158 8.75e-73 216
MS.gene009053.t1 AT4G04080 63.291 158 56 2 1 157 1 157 1.62e-70 211
MS.gene009053.t1 AT3G01020 61.585 164 60 1 1 164 3 163 1.46e-66 200

Find 48 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAATTAAGGTTGATGATAA+TGG 0.228001 8.2:+36457601 MS.gene009053:CDS
TGTCATGAAGTTTCAAATTA+AGG 0.237273 8.2:+36457588 MS.gene009053:CDS
AGTCGCCAATTCCAGCAATT+AGG 0.263293 8.2:+36457440 MS.gene009053:CDS
GATTCTTGCTTTAAGACCTT+TGG 0.331092 8.2:+36457634 MS.gene009053:CDS
GTCGCCAATTCCAGCAATTA+GGG 0.344413 8.2:+36457441 MS.gene009053:CDS
ATGCTGCAGTGAAGCTTAAC+TGG 0.354352 8.2:-36459313 None:intergenic
TGCAGCTACTGAATGGGTTA+AGG 0.358960 8.2:+36457832 MS.gene009053:intron
GATGTAGGATCTGCTCTTGT+TGG 0.360663 8.2:+36457547 MS.gene009053:CDS
GCGACTCAAACGACGCCGTT+TGG 0.381388 8.2:-36457423 None:intergenic
AGAACCCTAATTGCTGGAAT+TGG 0.383969 8.2:-36457445 None:intergenic
GCAGCTACTGAATGGGTTAA+GGG 0.384513 8.2:+36457833 MS.gene009053:intron
TATTGAAGGATCCAACATTC+CGG 0.387150 8.2:-36457513 None:intergenic
CGTGGAAGAACCCTAATTGC+TGG 0.397022 8.2:-36457451 None:intergenic
ATCCCGCTCTTCCTTATTGA+AGG 0.405033 8.2:-36457527 None:intergenic
ATTGAAGGATCCAACATTCC+GGG 0.441741 8.2:-36457512 None:intergenic
TGCCTCGGCTACTGCGGCCA+CGG 0.446467 8.2:+36459387 MS.gene009053:CDS
CGCAAAGAAACTCGTCCAAA+CGG 0.447336 8.2:+36457408 MS.gene009053:CDS
GAATGTTGGATCCTTCAATA+AGG 0.455792 8.2:+36457516 MS.gene009053:CDS
TGCTTTAAGACCTTTGGATG+TGG 0.461939 8.2:+36457640 MS.gene009053:CDS
TACGAAAATCCCCGGAATGT+TGG 0.502070 8.2:+36457502 MS.gene009053:CDS
GCCTCGGCTACTGCGGCCAC+GGG 0.517239 8.2:+36459388 MS.gene009053:CDS
AATAAGGAAGAGCGGGATGT+AGG 0.517685 8.2:+36457532 MS.gene009053:CDS
ATCCTTCAATAAGGAAGAGC+GGG 0.537337 8.2:+36457525 MS.gene009053:CDS
TGCAGTGAAGCTTAACTGGC+GGG 0.542392 8.2:-36459309 None:intergenic
TCCCGTGGCCGCAGTAGCCG+AGG 0.550070 8.2:-36459389 None:intergenic
GCTATTGCTTCATCGTCCGT+TGG 0.572466 8.2:+36457667 MS.gene009053:CDS
TTATGAAGCTAAGCGTGCCT+CGG 0.575006 8.2:+36459372 MS.gene009053:CDS
CTTGTTGGTGCACCCGCTTG+TGG 0.585089 8.2:+36457562 MS.gene009053:CDS
CTTCATGACATCACCACAAG+CGG 0.586806 8.2:-36457575 None:intergenic
ATTCTACCACGAGAGGGTGG+TGG 0.593190 8.2:+36457474 MS.gene009053:CDS
TAAGCGTGCCTCGGCTACTG+CGG 0.598393 8.2:+36459381 MS.gene009053:CDS
TTCATGACATCACCACAAGC+GGG 0.599308 8.2:-36457574 None:intergenic
TCACTGCAGCATGCTTGCTG+AGG 0.608636 8.2:+36459324 MS.gene009053:CDS
TGGATCACTACGAAAATCCC+CGG 0.610214 8.2:+36457494 MS.gene009053:CDS
GGTTAAGGGAAAGCAAATTG+AGG 0.612867 8.2:+36457847 MS.gene009053:CDS
TCCACGATTCTACCACGAGA+GGG 0.625238 8.2:+36457468 MS.gene009053:CDS
AGTGGCAGATTTGTCTCCCG+TGG 0.628353 8.2:-36459404 None:intergenic
CTGCAGTGAAGCTTAACTGG+CGG 0.631259 8.2:-36459310 None:intergenic
ACCCTCTCGTGGTAGAATCG+TGG 0.631852 8.2:-36457469 None:intergenic
TTGAAGGATCCAACATTCCG+GGG 0.632300 8.2:-36457511 None:intergenic
AATAGCGGAACCACATCCAA+AGG 0.639771 8.2:-36457650 None:intergenic
AGTGATCCACCACCCTCTCG+TGG 0.652272 8.2:-36457480 None:intergenic
TTCCACGATTCTACCACGAG+AGG 0.656410 8.2:+36457467 MS.gene009053:CDS
CAATGGGAGAAATCATGCAG+TGG 0.672265 8.2:-36459422 None:intergenic
GATCCTTCAATAAGGAAGAG+CGG 0.672957 8.2:+36457524 MS.gene009053:CDS
AACGGACGATGAAGCAATAG+CGG 0.675366 8.2:-36457665 None:intergenic
ACGATTCTACCACGAGAGGG+TGG 0.684824 8.2:+36457471 MS.gene009053:CDS
TGAGGATGCTATAAAAGCAG+CGG 0.695297 8.2:+36459342 MS.gene009053:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAATAAAACTTGATAT+AGG - chr8.2:36458115-36458134 None:intergenic 10.0%
!! ATAATCAAATTCAATAAAAA+AGG - chr8.2:36457773-36457792 None:intergenic 10.0%
!! TAATCAAATTCAATAAAAAA+GGG - chr8.2:36457772-36457791 None:intergenic 10.0%
!!! ATTAAGGATTTTTTTTTTTT+AGG + chr8.2:36457726-36457745 MS.gene009053:intron 10.0%
!!! TTAAGGATTTTTTTTTTTTA+GGG + chr8.2:36457727-36457746 MS.gene009053:intron 10.0%
!! TTATATTTATTCTTCATGAT+CGG + chr8.2:36458933-36458952 MS.gene009053:intron 15.0%
!!! AATAGATACATAATTTTTAG+TGG + chr8.2:36459041-36459060 MS.gene009053:intron 15.0%
!!! AGTGTAACTTATTTTATTTT+AGG - chr8.2:36458715-36458734 None:intergenic 15.0%
!!! ATAAATTTTTTGTTGAAGAT+GGG + chr8.2:36458207-36458226 MS.gene009053:intron 15.0%
!!! TATAAATTTTTTGTTGAAGA+TGG + chr8.2:36458206-36458225 MS.gene009053:intron 15.0%
!!! TCCCAAATTTTAATAAATTT+GGG - chr8.2:36459022-36459041 None:intergenic 15.0%
!!! TTCCCAAATTTTAATAAATT+TGG - chr8.2:36459023-36459042 None:intergenic 15.0%
!!! TTGGTTTTAATTTTATGTTT+GGG + chr8.2:36458274-36458293 MS.gene009053:intron 15.0%
!! ATGTAGAAAGCAAATATATT+TGG + chr8.2:36458251-36458270 MS.gene009053:intron 20.0%
!! GCCCAAATTTATTAAAATTT+GGG + chr8.2:36459018-36459037 MS.gene009053:intron 20.0%
!! TGAAGTTAAAATTGTAATGT+TGG - chr8.2:36458470-36458489 None:intergenic 20.0%
!! TGCCCAAATTTATTAAAATT+TGG + chr8.2:36459017-36459036 MS.gene009053:intron 20.0%
!!! AAATTTTAATAAATTTGGGC+AGG - chr8.2:36459018-36459037 None:intergenic 20.0%
!!! AACTTATTTTATTTTAGGAC+AGG - chr8.2:36458710-36458729 None:intergenic 20.0%
!!! ACTTATTTTATTTTAGGACA+GGG - chr8.2:36458709-36458728 None:intergenic 20.0%
!!! ATTTTTATCTTTCTTCAGTT+CGG + chr8.2:36458132-36458151 MS.gene009053:intron 20.0%
!!! CTACTAAATAGTTTTATCTT+TGG + chr8.2:36459189-36459208 MS.gene009053:intron 20.0%
!!! CTTTTATGAATATTACTACT+TGG + chr8.2:36458791-36458810 MS.gene009053:intron 20.0%
!!! GTTACATTTTAATCAAACTT+TGG + chr8.2:36458159-36458178 MS.gene009053:intron 20.0%
!!! GTTGGTTTTAATTTTATGTT+TGG + chr8.2:36458273-36458292 MS.gene009053:intron 20.0%
!!! TGGTTTTAATTTTATGTTTG+GGG + chr8.2:36458275-36458294 MS.gene009053:intron 20.0%
!!! TTTTAATAAACCATTCTCTA+AGG + chr8.2:36458628-36458647 MS.gene009053:intron 20.0%
! AAATTGTAATGTTGGATGAT+AGG - chr8.2:36458462-36458481 None:intergenic 25.0%
! AACAAGAAAAAGAAACCAAA+AGG - chr8.2:36459112-36459131 None:intergenic 25.0%
! AGAAAGCAAATATATTTGGT+TGG + chr8.2:36458255-36458274 MS.gene009053:intron 25.0%
! TGTCATGAAGTTTCAAATTA+AGG + chr8.2:36457588-36457607 MS.gene009053:CDS 25.0%
! TTATCATTCTCTAATAGTTC+AGG + chr8.2:36458589-36458608 MS.gene009053:intron 25.0%
!! ATATTTTGCCATAATAAGCA+TGG + chr8.2:36458070-36458089 MS.gene009053:intron 25.0%
!! TATTTTTCGCTTGAGAATAT+TGG + chr8.2:36458030-36458049 MS.gene009053:intron 25.0%
!!! ACAGCTTATTTTTCTACTTA+TGG + chr8.2:36458326-36458345 MS.gene009053:intron 25.0%
!!! CAAATTAAGGTTGATGATAA+TGG + chr8.2:36457601-36457620 MS.gene009053:CDS 25.0%
!!! CTTATTTTATTTTAGGACAG+GGG - chr8.2:36458708-36458727 None:intergenic 25.0%
!!! TGGTTTCTTTTTCTTGTTTT+TGG + chr8.2:36459114-36459133 MS.gene009053:intron 25.0%
!!! TGGTTTGTTATAGGAAATTA+AGG + chr8.2:36457710-36457729 MS.gene009053:intron 25.0%
!!! TTATTTTATTTTAGGACAGG+GGG - chr8.2:36458707-36458726 None:intergenic 25.0%
!!! TTCTTTTTCTTGTTTTTGGA+AGG + chr8.2:36459118-36459137 MS.gene009053:intron 25.0%
!!! TTTTAATCAAACTTTGGCTT+TGG + chr8.2:36458165-36458184 MS.gene009053:intron 25.0%
AACTGTTTCCATGCTTATTA+TGG - chr8.2:36458081-36458100 None:intergenic 30.0%
AATAAGCTGTTTATCCAAAC+AGG - chr8.2:36458316-36458335 None:intergenic 30.0%
ATAAGCTGTTTATCCAAACA+GGG - chr8.2:36458315-36458334 None:intergenic 30.0%
ATGAAAAAACAACCTACCAA+CGG - chr8.2:36457686-36457705 None:intergenic 30.0%
ATTAAGAACACGTAAGTAAC+TGG + chr8.2:36457881-36457900 MS.gene009053:intron 30.0%
TAAGATTAAATCCTGCAGAT+CGG - chr8.2:36459169-36459188 None:intergenic 30.0%
TCATAAAAGTTAGTATTCGC+TGG - chr8.2:36458780-36458799 None:intergenic 30.0%
! TTTTCGTGCACTCTTTAATT+TGG - chr8.2:36458519-36458538 None:intergenic 30.0%
!! AAGCAAATTGTGTTTTTGTC+TGG + chr8.2:36457929-36457948 MS.gene009053:intron 30.0%
!! TTCATGTACTGGTTTGTTAT+AGG + chr8.2:36457701-36457720 MS.gene009053:intron 30.0%
!!! TAGGTTGTTTTTTCATGTAC+TGG + chr8.2:36457690-36457709 MS.gene009053:intron 30.0%
!!! TTTTTCTTGTTTTTGGAAGG+AGG + chr8.2:36459121-36459140 MS.gene009053:intron 30.0%
AACATAGCAGCAAAAGATGA+TGG - chr8.2:36459084-36459103 None:intergenic 35.0%
AATAGCTCGACCTATAGAAT+AGG + chr8.2:36458893-36458912 MS.gene009053:intron 35.0%
ATAGCTCGACCTATAGAATA+GGG + chr8.2:36458894-36458913 MS.gene009053:intron 35.0%
GAAGTTTGTGTATTACTACG+TGG + chr8.2:36457954-36457973 MS.gene009053:intron 35.0%
GAATGTTGGATCCTTCAATA+AGG + chr8.2:36457516-36457535 MS.gene009053:CDS 35.0%
TATTGAAGGATCCAACATTC+CGG - chr8.2:36457516-36457535 None:intergenic 35.0%
! CATCTTTTGCTGCTATGTTT+TGG + chr8.2:36459085-36459104 MS.gene009053:intron 35.0%
! GAGTGTTTTTCCTTAGAGAA+TGG - chr8.2:36458641-36458660 None:intergenic 35.0%
!! GATTCTTGCTTTAAGACCTT+TGG + chr8.2:36457634-36457653 MS.gene009053:CDS 35.0%
!! TTTGGTAATGCTTCCATGAT+TGG + chr8.2:36459207-36459226 MS.gene009053:intron 35.0%
!! TTTTGTTGAAGATGGGTTTC+TGG + chr8.2:36458214-36458233 MS.gene009053:intron 35.0%
AGAACCCTAATTGCTGGAAT+TGG - chr8.2:36457448-36457467 None:intergenic 40.0%
ATCCTTCAATAAGGAAGAGC+GGG + chr8.2:36457525-36457544 MS.gene009053:CDS 40.0%
ATTGAAGGATCCAACATTCC+GGG - chr8.2:36457515-36457534 None:intergenic 40.0%
CAGACCAAAACTACCAATCA+TGG - chr8.2:36459223-36459242 None:intergenic 40.0%
CCATCAAACAATGCTAGCAA+GGG + chr8.2:36458842-36458861 MS.gene009053:intron 40.0%
GATCCTTCAATAAGGAAGAG+CGG + chr8.2:36457524-36457543 MS.gene009053:CDS 40.0%
GGTTAAGGGAAAGCAAATTG+AGG + chr8.2:36457847-36457866 MS.gene009053:CDS 40.0%
TAGCTACTAGGAAGAGTTTC+CGG + chr8.2:36458865-36458884 MS.gene009053:intron 40.0%
TCCATCAAACAATGCTAGCA+AGG + chr8.2:36458841-36458860 MS.gene009053:intron 40.0%
TGAGGATGCTATAAAAGCAG+CGG + chr8.2:36459342-36459361 MS.gene009053:CDS 40.0%
! ATCGTTTTGCAGCTACTGAA+TGG + chr8.2:36457825-36457844 MS.gene009053:intron 40.0%
! CTGGATTGCGTTATTTCAAC+TGG - chr8.2:36458761-36458780 None:intergenic 40.0%
! GTTATTTCAACTGGTCGCTA+TGG - chr8.2:36458752-36458771 None:intergenic 40.0%
! TAGGTCGAGCTATTTCATAC+CGG - chr8.2:36458887-36458906 None:intergenic 40.0%
! TCGTTTTGCAGCTACTGAAT+GGG + chr8.2:36457826-36457845 MS.gene009053:intron 40.0%
!! CTGCTATGTTTTGGACCTTT+TGG + chr8.2:36459094-36459113 MS.gene009053:intron 40.0%
!! GCTTCCATGATTGGTAGTTT+TGG + chr8.2:36459216-36459235 MS.gene009053:intron 40.0%
!! TGCTTTAAGACCTTTGGATG+TGG + chr8.2:36457640-36457659 MS.gene009053:CDS 40.0%
!!! AGCTTTGGATTCCTTTTCCT+TGG - chr8.2:36458962-36458981 None:intergenic 40.0%
!!! TTTATTTTAGGACAGGGGGT+GGG - chr8.2:36458703-36458722 None:intergenic 40.0%
!!! TTTTATTTTAGGACAGGGGG+TGG - chr8.2:36458704-36458723 None:intergenic 40.0%
AACGGACGATGAAGCAATAG+CGG - chr8.2:36457668-36457687 None:intergenic 45.0%
AATAAGGAAGAGCGGGATGT+AGG + chr8.2:36457532-36457551 MS.gene009053:CDS 45.0%
AGTCGCCAATTCCAGCAATT+AGG + chr8.2:36457440-36457459 MS.gene009053:CDS 45.0%
ATCCCGCTCTTCCTTATTGA+AGG - chr8.2:36457530-36457549 None:intergenic 45.0%
ATGATCGGCAACCAAGGAAA+AGG + chr8.2:36458948-36458967 MS.gene009053:intron 45.0%
ATGCTGCAGTGAAGCTTAAC+TGG - chr8.2:36459316-36459335 None:intergenic 45.0%
CACTCCTCTCCCTATTCTAT+AGG - chr8.2:36458906-36458925 None:intergenic 45.0%
CCCTTGCTAGCATTGTTTGA+TGG - chr8.2:36458845-36458864 None:intergenic 45.0%
CGCAAAGAAACTCGTCCAAA+CGG + chr8.2:36457408-36457427 MS.gene009053:CDS 45.0%
CTATAGAATAGGGAGAGGAG+TGG + chr8.2:36458904-36458923 MS.gene009053:intron 45.0%
CTTCATGACATCACCACAAG+CGG - chr8.2:36457578-36457597 None:intergenic 45.0%
GACGTGTAGCTAAGTAGCTT+TGG - chr8.2:36458977-36458996 None:intergenic 45.0%
GATGTAGGATCTGCTCTTGT+TGG + chr8.2:36457547-36457566 MS.gene009053:CDS 45.0%
GCGCGATTCAGAAACCAAAA+GGG - chr8.2:36459147-36459166 None:intergenic 45.0%
GTCGCCAATTCCAGCAATTA+GGG + chr8.2:36457441-36457460 MS.gene009053:CDS 45.0%
TACGAAAATCCCCGGAATGT+TGG + chr8.2:36457502-36457521 MS.gene009053:CDS 45.0%
TCGACCTATAGAATAGGGAG+AGG + chr8.2:36458899-36458918 MS.gene009053:intron 45.0%
TGGATCACTACGAAAATCCC+CGG + chr8.2:36457494-36457513 MS.gene009053:CDS 45.0%
TTATGAAGCTAAGCGTGCCT+CGG + chr8.2:36459372-36459391 MS.gene009053:CDS 45.0%
TTCATGACATCACCACAAGC+GGG - chr8.2:36457577-36457596 None:intergenic 45.0%
TTCTTCATGATCGGCAACCA+AGG + chr8.2:36458942-36458961 MS.gene009053:intron 45.0%
TTGAAGGATCCAACATTCCG+GGG - chr8.2:36457514-36457533 None:intergenic 45.0%
! AATAGCGGAACCACATCCAA+AGG - chr8.2:36457653-36457672 None:intergenic 45.0%
!! AACTTTGGCTTTGGTGCTTG+AGG + chr8.2:36458174-36458193 MS.gene009053:intron 45.0%
!! GCAGCTACTGAATGGGTTAA+GGG + chr8.2:36457833-36457852 MS.gene009053:intron 45.0%
!! TGCAGCTACTGAATGGGTTA+AGG + chr8.2:36457832-36457851 MS.gene009053:intron 45.0%
!! TTTTTGGAAGGAGGCCCTTT+TGG + chr8.2:36459130-36459149 MS.gene009053:intron 45.0%
CGTGGAAGAACCCTAATTGC+TGG - chr8.2:36457454-36457473 None:intergenic 50.0%
CTGCAGTGAAGCTTAACTGG+CGG - chr8.2:36459313-36459332 None:intergenic 50.0%
GCTATTGCTTCATCGTCCGT+TGG + chr8.2:36457667-36457686 MS.gene009053:CDS 50.0%
GGCGCGATTCAGAAACCAAA+AGG - chr8.2:36459148-36459167 None:intergenic 50.0%
TCAACTGGTCGCTATGGTGA+TGG - chr8.2:36458746-36458765 None:intergenic 50.0%
TCCACGATTCTACCACGAGA+GGG + chr8.2:36457468-36457487 MS.gene009053:CDS 50.0%
TGCAGTGAAGCTTAACTGGC+GGG - chr8.2:36459312-36459331 None:intergenic 50.0%
TGCTAGCAAGGGTAGCTACT+AGG + chr8.2:36458853-36458872 MS.gene009053:intron 50.0%
TTCCACGATTCTACCACGAG+AGG + chr8.2:36457467-36457486 MS.gene009053:CDS 50.0%
TTGAAGATGCGAGCCCTGTT+TGG + chr8.2:36458299-36458318 MS.gene009053:intron 50.0%
TTGCTTCATCGTCCGTTGGT+AGG + chr8.2:36457671-36457690 MS.gene009053:intron 50.0%
!! GCTTTGGTGCTTGAGGTTGA+TGG + chr8.2:36458181-36458200 MS.gene009053:intron 50.0%
!! TGGTCGCTATGGTGATGGTT+AGG - chr8.2:36458741-36458760 None:intergenic 50.0%
ACCCTCTCGTGGTAGAATCG+TGG - chr8.2:36457472-36457491 None:intergenic 55.0%
ACGATTCTACCACGAGAGGG+TGG + chr8.2:36457471-36457490 MS.gene009053:CDS 55.0%
AGTGGCAGATTTGTCTCCCG+TGG - chr8.2:36459407-36459426 None:intergenic 55.0%
ATTCTACCACGAGAGGGTGG+TGG + chr8.2:36457474-36457493 MS.gene009053:CDS 55.0%
! TCACTGCAGCATGCTTGCTG+AGG + chr8.2:36459324-36459343 MS.gene009053:CDS 55.0%
!!! ATTTTAGGACAGGGGGTGGG+TGG - chr8.2:36458700-36458719 None:intergenic 55.0%
!!! TTTTAGGACAGGGGGTGGGT+GGG - chr8.2:36458699-36458718 None:intergenic 55.0%
AGTGATCCACCACCCTCTCG+TGG - chr8.2:36457483-36457502 None:intergenic 60.0%
CTTGTTGGTGCACCCGCTTG+TGG + chr8.2:36457562-36457581 MS.gene009053:CDS 60.0%
GCGACTCAAACGACGCCGTT+TGG - chr8.2:36457426-36457445 None:intergenic 60.0%
TAAGCGTGCCTCGGCTACTG+CGG + chr8.2:36459381-36459400 MS.gene009053:CDS 60.0%
! TCTGAATCGCGCCGATCTGC+AGG + chr8.2:36459155-36459174 MS.gene009053:intron 60.0%
ACAGGGGGTGGGTGGGTGAG+TGG - chr8.2:36458692-36458711 None:intergenic 70.0%
GGTGGGTGGGTGAGTGGTGG+TGG - chr8.2:36458686-36458705 None:intergenic 70.0%
TGCCTCGGCTACTGCGGCCA+CGG + chr8.2:36459387-36459406 MS.gene009053:CDS 70.0%
GCCTCGGCTACTGCGGCCAC+GGG + chr8.2:36459388-36459407 MS.gene009053:CDS 75.0%
GGGGGTGGGTGGGTGAGTGG+TGG - chr8.2:36458689-36458708 None:intergenic 75.0%
TCCCGTGGCCGCAGTAGCCG+AGG - chr8.2:36459392-36459411 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 36457397 36459432 36457397 ID=MS.gene009053
chr8.2 mRNA 36457397 36459432 36457397 ID=MS.gene009053.t1;Parent=MS.gene009053
chr8.2 exon 36457397 36457688 36457397 ID=MS.gene009053.t1.exon1;Parent=MS.gene009053.t1
chr8.2 CDS 36457397 36457688 36457397 ID=cds.MS.gene009053.t1;Parent=MS.gene009053.t1
chr8.2 exon 36457837 36457891 36457837 ID=MS.gene009053.t1.exon2;Parent=MS.gene009053.t1
chr8.2 CDS 36457837 36457891 36457837 ID=cds.MS.gene009053.t1;Parent=MS.gene009053.t1
chr8.2 exon 36459285 36459432 36459285 ID=MS.gene009053.t1.exon3;Parent=MS.gene009053.t1
chr8.2 CDS 36459285 36459432 36459285 ID=cds.MS.gene009053.t1;Parent=MS.gene009053.t1
Gene Sequence

>MS.gene009053

ATGCTGAGAATCGCAAAGAAACTCGTCCAAACGGCGTCGTTTGAGTCGCCAATTCCAGCAATTAGGGTTCTTCCACGATTCTACCACGAGAGGGTGGTGGATCACTACGAAAATCCCCGGAATGTTGGATCCTTCAATAAGGAAGAGCGGGATGTAGGATCTGCTCTTGTTGGTGCACCCGCTTGTGGTGATGTCATGAAGTTTCAAATTAAGGTTGATGATAATGGAACAATCGTTGATTCTTGCTTTAAGACCTTTGGATGTGGTTCCGCTATTGCTTCATCGTCCGTTGGTAGGTTGTTTTTTCATGTACTGGTTTGTTATAGGAAATTAAGGATTTTTTTTTTTTAGGGTTGTGTTTGAATTTCAATTCCCTTTTTTATTGAATTTGATTATTACGACTATGTTATTGTTAATTGTGCTTGTTTATCGTTTTGCAGCTACTGAATGGGTTAAGGGAAAGCAAATTGAGGAAGTTTTAAGCATTAAGAACACGTAAGTAACTGGTCTAAGAATTTTTTACTTTGTTGCAAAGCAAATTGTGTTTTTGTCTGGCTGAAGTTTGTGTATTACTACGTGGTTTATTTCTTAATTGTTGTGTATTTTTATGTGATTTATTTCTTAATTATGTGATATTTTTCGCTTGAGAATATTGGATGATAACGAAATAATAATATTTTGCCATAATAAGCATGGAAACAGTTCTGAGCTATATCCTATATCAAGTTTTATTTTATTTTTATCTTTCTTCAGTTCGGTAATGTTACATTTTAATCAAACTTTGGCTTTGGTGCTTGAGGTTGATGGTATATAAATTTTTTGTTGAAGATGGGTTTCTGGCTATTCAAGTTTAGATGTAGAAAGCAAATATATTTGGTTGGTTTTAATTTTATGTTTGGGGTTTGAAGATGCGAGCCCTGTTTGGATAAACAGCTTATTTTTCTACTTATGGTATAAACGATTATCATATAAGCACTTAAGAGATATACTATTTCTATTTTCTATAACACAAGATAAAATAAAGTCAAGCTGTTTTCATATAATTTGTAAGCTGTTTTATAACCTATCATCCAACATTACAATTTTAACTTCATCAAACAATGTTTTGAACTACGTAGACCAAATTAAAGAGTGCACGAAAAGTAATCATATTTTGTAAGAAATACAAAAGACTAATTTTTTTTTTTTTTTTTTATCATTCTCTAATAGTTCAGGTAGCACATAAATACATTTTTAATAAACCATTCTCTAAGGAAAAACACTCTAATCACATTGCAAAGTGCAAACCACCACCACTCACCCACCCACCCCCTGTCCTAAAATAAAATAAGTTACACTAATCCTAACCATCACCATAGCGACCAGTTGAAATAACGCAATCCAGCGAATACTAACTTTTATGAATATTACTACTTGGCGACGATGTAGTACATTAGCTATTTTGTCCATCAAACAATGCTAGCAAGGGTAGCTACTAGGAAGAGTTTCCGGTATGAAATAGCTCGACCTATAGAATAGGGAGAGGAGTGGACTCTGTTATATTTATTCTTCATGATCGGCAACCAAGGAAAAGGAATCCAAAGCTACTTAGCTACACGTCGAAGATATTCTTCAATATCCTGCCCAAATTTATTAAAATTTGGGAATAGATACATAATTTTTAGTGGTCTTGATACATAACAAGCCATCATCTTTTGCTGCTATGTTTTGGACCTTTTGGTTTCTTTTTCTTGTTTTTGGAAGGAGGCCCTTTTGGTTTCTGAATCGCGCCGATCTGCAGGATTTAATCTTACTACTAAATAGTTTTATCTTTGGTAATGCTTCCATGATTGGTAGTTTTGGTCTGTTTGTTGTTAGTTTTTGAAGTGACAAAATTAATCTTGTGCAGTGCGATTGCAAAGCATCTTAAACTCCCGCCAGTTAAGCTTCACTGCAGCATGCTTGCTGAGGATGCTATAAAAGCAGCGGTTAAAGATTATGAAGCTAAGCGTGCCTCGGCTACTGCGGCCACGGGAGACAAATCTGCCACTGCATGA
Protein sequence

>MS.gene009053.t1

MLRIAKKLVQTASFESPIPAIRVLPRFYHERVVDHYENPRNVGSFNKEERDVGSALVGAPACGDVMKFQIKVDDNGTIVDSCFKTFGCGSAIASSSVATEWVKGKQIEEVLSIKNTAIAKHLKLPPVKLHCSMLAEDAIKAAVKDYEAKRASATAATGDKSATA