Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29363.t1 | XP_003601257.1 | 97.6 | 164 | 4 | 0 | 1 | 164 | 1 | 164 | 1.80E-83 | 318.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29363.t1 | O49627 | 77.5 | 160 | 34 | 2 | 5 | 163 | 7 | 165 | 1.4e-60 | 233.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29363.t1 | B7FHC6 | 97.6 | 164 | 4 | 0 | 1 | 164 | 1 | 164 | 1.3e-83 | 318.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05080 | MS.gene29363 | 0.808129 | 3.60E-50 | -1.69E-46 |
| MS.gene050868 | MS.gene29363 | 0.81655 | 5.22E-52 | -1.69E-46 |
| MS.gene050871 | MS.gene29363 | 0.8106 | 1.06E-50 | -1.69E-46 |
| MS.gene056283 | MS.gene29363 | 0.800056 | 1.72E-48 | -1.69E-46 |
| MS.gene056387 | MS.gene29363 | 0.814563 | 1.45E-51 | -1.69E-46 |
| MS.gene056618 | MS.gene29363 | -0.809706 | 1.66E-50 | -1.69E-46 |
| MS.gene058448 | MS.gene29363 | 0.820258 | 7.54E-53 | -1.69E-46 |
| MS.gene059865 | MS.gene29363 | 0.80139 | 9.21E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene83301 | MS.gene29363 | PPI |
| MS.gene29363 | MS.gene038497 | PPI |
| MS.gene29363 | MS.gene059021 | PPI |
| MS.gene35660 | MS.gene29363 | PPI |
| MS.gene009043 | MS.gene29363 | PPI |
| MS.gene29363 | MS.gene009053 | PPI |
| MS.gene29099 | MS.gene29363 | PPI |
| MS.gene038024 | MS.gene29363 | PPI |
| MS.gene031845 | MS.gene29363 | PPI |
| MS.gene069794 | MS.gene29363 | PPI |
| MS.gene30769 | MS.gene29363 | PPI |
| MS.gene29363 | MS.gene29101 | PPI |
| MS.gene022304 | MS.gene29363 | PPI |
| MS.gene29363 | MS.gene61049 | PPI |
| MS.gene29363 | MS.gene069794 | PPI |
| MS.gene25969 | MS.gene29363 | PPI |
| MS.gene94805 | MS.gene29363 | PPI |
| MS.gene24026 | MS.gene29363 | PPI |
| MS.gene29363 | MS.gene29054 | PPI |
| MS.gene29363 | MS.gene031844 | PPI |
| MS.gene29363 | MS.gene29055 | PPI |
| MS.gene29363 | MS.gene70632 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29363.t1 | MTR_3g077720 | 97.561 | 164 | 4 | 0 | 1 | 164 | 1 | 164 | 3.71e-120 | 336 |
| MS.gene29363.t1 | MTR_3g077730 | 87.023 | 131 | 15 | 1 | 32 | 160 | 5 | 135 | 2.88e-77 | 227 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29363.t1 | AT4G22220 | 80.392 | 153 | 28 | 2 | 5 | 156 | 7 | 158 | 9.46e-85 | 246 |
| MS.gene29363.t1 | AT4G04080 | 70.253 | 158 | 45 | 2 | 1 | 157 | 1 | 157 | 2.16e-79 | 233 |
| MS.gene29363.t1 | AT3G01020 | 72.662 | 139 | 38 | 0 | 26 | 164 | 25 | 163 | 3.86e-71 | 212 |
Find 46 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGTACTTACGTGTTCTTAA+TGG | 0.261409 | 3.2:-68682139 | None:intergenic |
| GCAGCTACTGAATGGGTAAA+AGG | 0.280013 | 3.2:+68682093 | MS.gene29363:intron |
| GATGCTCGCTTTAAGACTTT+TGG | 0.312604 | 3.2:+68681877 | MS.gene29363:CDS |
| ATGCTGCAGTGAAGCTTAAC+TGG | 0.357752 | 3.2:-68684002 | None:intergenic |
| AGACGCCAAATCCAGCGATT+AGG | 0.369036 | 3.2:+68681683 | MS.gene29363:CDS |
| AGAATCCTAATCGCTGGATT+TGG | 0.371565 | 3.2:-68681688 | None:intergenic |
| TATCGAAGGATCCAACATTC+CGG | 0.389446 | 3.2:-68681756 | None:intergenic |
| CAAATCAAGGTTGATGAGAA+TGG | 0.396788 | 3.2:+68681844 | MS.gene29363:CDS |
| ATCGAAGGATCCAACATTCC+GGG | 0.431036 | 3.2:-68681755 | None:intergenic |
| TGCCTCGGCTACTGCGGCCA+CGG | 0.446467 | 3.2:+68684076 | MS.gene29363:CDS |
| ATGGTGGGAACTGGTCTTGT+TGG | 0.461756 | 3.2:+68681790 | MS.gene29363:CDS |
| AAATCAAGGTTGATGAGAAT+GGG | 0.463058 | 3.2:+68681845 | MS.gene29363:CDS |
| CGCAAAGAAACTCGTGCAAA+CGG | 0.463462 | 3.2:+68681651 | MS.gene29363:CDS |
| AATGATCCGATGGTGGGAAC+TGG | 0.473170 | 3.2:+68681781 | MS.gene29363:CDS |
| TACGACAATCCCCGGAATGT+TGG | 0.510499 | 3.2:+68681745 | MS.gene29363:CDS |
| GCCTCGGCTACTGCGGCCAC+GGG | 0.517239 | 3.2:+68684077 | MS.gene29363:CDS |
| TGTCATGAAGCTTCAAATCA+AGG | 0.528073 | 3.2:+68681831 | MS.gene29363:CDS |
| GCTATTGCTTCATCGTCCGT+TGG | 0.529119 | 3.2:+68681910 | MS.gene29363:CDS |
| CGTGGAAGAATCCTAATCGC+TGG | 0.531980 | 3.2:-68681694 | None:intergenic |
| ATGGGTAAAAGGAAAGCAAA+TGG | 0.536082 | 3.2:+68682104 | MS.gene29363:CDS |
| TCCCGTGGCCGCAGTAGCCG+AGG | 0.550070 | 3.2:-68684078 | None:intergenic |
| CGATAAGAATGATCCGATGG+TGG | 0.569162 | 3.2:+68681774 | MS.gene29363:CDS |
| TTATGAAGCTAAGCGTGCCT+CGG | 0.575006 | 3.2:+68684061 | MS.gene29363:CDS |
| TGGATCACTACGACAATCCC+CGG | 0.588923 | 3.2:+68681737 | MS.gene29363:CDS |
| CTTCATGACATCACCACAAG+CGG | 0.590457 | 3.2:-68681818 | None:intergenic |
| ATTCTACCACGAGAGGGTGG+TGG | 0.593190 | 3.2:+68681717 | MS.gene29363:CDS |
| TAAGCGTGCCTCGGCTACTG+CGG | 0.598393 | 3.2:+68684070 | MS.gene29363:CDS |
| TTCATGACATCACCACAAGC+GGG | 0.602959 | 3.2:-68681817 | None:intergenic |
| AAAAGGAAAGCAAATGGAGG+AGG | 0.604892 | 3.2:+68682110 | MS.gene29363:CDS |
| CATCGGATCATTCTTATCGA+AGG | 0.605249 | 3.2:-68681770 | None:intergenic |
| ACAAGACCAGTTCCCACCAT+CGG | 0.608536 | 3.2:-68681787 | None:intergenic |
| TCACTGCAGCATGCTTGCTG+AGG | 0.608636 | 3.2:+68684013 | MS.gene29363:CDS |
| TGCAGTGAAGCTTAACTGGA+GGG | 0.610340 | 3.2:-68683998 | None:intergenic |
| GATAAGAATGATCCGATGGT+GGG | 0.625202 | 3.2:+68681775 | MS.gene29363:CDS |
| TCCACGATTCTACCACGAGA+GGG | 0.625238 | 3.2:+68681711 | MS.gene29363:CDS |
| TCGAAGGATCCAACATTCCG+GGG | 0.626085 | 3.2:-68681754 | None:intergenic |
| AGTGGCAGATTTGTCTCCCG+TGG | 0.628353 | 3.2:-68684093 | None:intergenic |
| ACCCTCTCGTGGTAGAATCG+TGG | 0.631852 | 3.2:-68681712 | None:intergenic |
| CTGCAGTGAAGCTTAACTGG+AGG | 0.632041 | 3.2:-68683999 | None:intergenic |
| CTTCGATAAGAATGATCCGA+TGG | 0.633992 | 3.2:+68681771 | MS.gene29363:CDS |
| CTTGTTGGTGCACCCGCTTG+TGG | 0.637545 | 3.2:+68681805 | MS.gene29363:CDS |
| AGTGATCCACCACCCTCTCG+TGG | 0.652272 | 3.2:-68681723 | None:intergenic |
| TTCCACGATTCTACCACGAG+AGG | 0.658430 | 3.2:+68681710 | MS.gene29363:CDS |
| CAATGGAAGAAATCATGCAG+TGG | 0.672265 | 3.2:-68684111 | None:intergenic |
| GGTAAAAGGAAAGCAAATGG+AGG | 0.675966 | 3.2:+68682107 | MS.gene29363:CDS |
| ACGATTCTACCACGAGAGGG+TGG | 0.684824 | 3.2:+68681714 | MS.gene29363:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACAATTTTTCATATAAAAAT+TGG | - | chr3.2:68682554-68682573 | None:intergenic | 10.0% |
| !! | CCAAAATATAATAAAACTTA+GGG | - | chr3.2:68683135-68683154 | None:intergenic | 15.0% |
| !!! | AATTCAGGATTTTTTTTTTT+AGG | + | chr3.2:68681967-68681986 | MS.gene29363:intron | 15.0% |
| !!! | ATTCAGGATTTTTTTTTTTA+GGG | + | chr3.2:68681968-68681987 | MS.gene29363:intron | 15.0% |
| !!! | CCTAAGTTTTATTATATTTT+GGG | + | chr3.2:68683133-68683152 | MS.gene29363:intron | 15.0% |
| !!! | GATAATAGAGATTTAAAATA+AGG | + | chr3.2:68682862-68682881 | MS.gene29363:intron | 15.0% |
| !!! | TGCTATTTAAAAAAATAGAA+GGG | - | chr3.2:68682421-68682440 | None:intergenic | 15.0% |
| !! | AAATTAATAGCTTTCAACAA+TGG | + | chr3.2:68682891-68682910 | MS.gene29363:intron | 20.0% |
| !! | ATTGTCTATTATAAAACTAG+AGG | + | chr3.2:68683060-68683079 | MS.gene29363:intron | 20.0% |
| !! | CCCAAAATATAATAAAACTT+AGG | - | chr3.2:68683136-68683155 | None:intergenic | 20.0% |
| !! | GCTATTTAAAAAAATAGAAG+GGG | - | chr3.2:68682420-68682439 | None:intergenic | 20.0% |
| !! | TATTTCCAAATACATGATTT+GGG | + | chr3.2:68682606-68682625 | MS.gene29363:intron | 20.0% |
| !! | TTGTCTATTATAAAACTAGA+GGG | + | chr3.2:68683061-68683080 | MS.gene29363:intron | 20.0% |
| !!! | AAGATATTTTGTTGGTTTTA+TGG | + | chr3.2:68683331-68683350 | MS.gene29363:intron | 20.0% |
| !!! | AGTTTTAACAGATCAATTAA+CGG | + | chr3.2:68682984-68683003 | MS.gene29363:intron | 20.0% |
| !!! | ATCTATTTTAAGAGACTTTA+GGG | + | chr3.2:68683031-68683050 | MS.gene29363:intron | 20.0% |
| !!! | CCCTAAGTTTTATTATATTT+TGG | + | chr3.2:68683132-68683151 | MS.gene29363:intron | 20.0% |
| !!! | GTGCTATTTAAAAAAATAGA+AGG | - | chr3.2:68682422-68682441 | None:intergenic | 20.0% |
| !!! | GTTTCAGTAAATTAATTTGA+CGG | - | chr3.2:68682477-68682496 | None:intergenic | 20.0% |
| !!! | TATCTATTTTAAGAGACTTT+AGG | + | chr3.2:68683030-68683049 | MS.gene29363:intron | 20.0% |
| !!! | TTCTGAGTTAATAAGTTTTA+GGG | + | chr3.2:68682348-68682367 | MS.gene29363:intron | 20.0% |
| !!! | TTGTTAACAATTTCCTTTTT+TGG | - | chr3.2:68683197-68683216 | None:intergenic | 20.0% |
| ! | AAAGAAAAAAAGAAACCAGA+AGG | - | chr3.2:68683781-68683800 | None:intergenic | 25.0% |
| ! | AATAAACTCTTTATCCAAAC+AGG | - | chr3.2:68683378-68683397 | None:intergenic | 25.0% |
| ! | AATAAGTGCTTATATGATCA+TGG | - | chr3.2:68683435-68683454 | None:intergenic | 25.0% |
| ! | ACATTTCTTCTTGAAATTGA+TGG | + | chr3.2:68683253-68683272 | MS.gene29363:intron | 25.0% |
| ! | ATAAACTCTTTATCCAAACA+GGG | - | chr3.2:68683377-68683396 | None:intergenic | 25.0% |
| ! | ATGTATTTGGAAATACGAAA+AGG | - | chr3.2:68682601-68682620 | None:intergenic | 25.0% |
| ! | ATTAACGGTATTAACTTAGA+AGG | + | chr3.2:68682999-68683018 | MS.gene29363:intron | 25.0% |
| ! | ATTATTGTGAATCAGTTCAT+TGG | + | chr3.2:68682512-68682531 | MS.gene29363:intron | 25.0% |
| ! | CTCTATTATCATAATTCTCT+CGG | - | chr3.2:68682852-68682871 | None:intergenic | 25.0% |
| ! | GATAAATGCTCAATAAAAAG+AGG | + | chr3.2:68682730-68682749 | MS.gene29363:intron | 25.0% |
| ! | GTATTTCCAAATACATGATT+TGG | + | chr3.2:68682605-68682624 | MS.gene29363:intron | 25.0% |
| ! | TCAAATAAGTTAATCCAAAC+AGG | + | chr3.2:68683643-68683662 | MS.gene29363:intron | 25.0% |
| ! | TCAACTTGTCATCATTAAAA+AGG | - | chr3.2:68683710-68683729 | None:intergenic | 25.0% |
| ! | TGTCTATTATAAAACTAGAG+GGG | + | chr3.2:68683062-68683081 | MS.gene29363:intron | 25.0% |
| ! | TTAACGGTATTAACTTAGAA+GGG | + | chr3.2:68683000-68683019 | MS.gene29363:intron | 25.0% |
| ! | TTATTGTGAATCAGTTCATT+GGG | + | chr3.2:68682513-68682532 | MS.gene29363:intron | 25.0% |
| ! | TTTGTTAATGCTTCTATGAT+TGG | + | chr3.2:68683899-68683918 | MS.gene29363:intron | 25.0% |
| !! | TATATGAATTTTGTAGAAGG+TGG | + | chr3.2:68683276-68683295 | MS.gene29363:intron | 25.0% |
| !! | TGGTATATGAATTTTGTAGA+AGG | + | chr3.2:68683273-68683292 | MS.gene29363:intron | 25.0% |
| !!! | ATTTTGTTGGTTTTATGGAT+GGG | + | chr3.2:68683336-68683355 | MS.gene29363:intron | 25.0% |
| !!! | CTTTTTAAGCATACCAAAAA+AGG | + | chr3.2:68683181-68683200 | MS.gene29363:intron | 25.0% |
| !!! | GTTCTGAGTTAATAAGTTTT+AGG | + | chr3.2:68682347-68682366 | MS.gene29363:intron | 25.0% |
| !!! | TATTTTGTTGGTTTTATGGA+TGG | + | chr3.2:68683335-68683354 | MS.gene29363:intron | 25.0% |
| !!! | TCTATTTTAAGAGACTTTAG+GGG | + | chr3.2:68683032-68683051 | MS.gene29363:intron | 25.0% |
| !!! | TTCATGTATTGGTTTGTTAT+AGG | + | chr3.2:68681943-68681962 | MS.gene29363:intron | 25.0% |
| AAACACTTGTGACACTATTT+GGG | - | chr3.2:68683607-68683626 | None:intergenic | 30.0% | |
| AAATAGTGTCACAAGTGTTT+AGG | + | chr3.2:68683607-68683626 | MS.gene29363:intron | 30.0% | |
| AGAAAGAACAAATACCTTGT+GGG | + | chr3.2:68682707-68682726 | MS.gene29363:intron | 30.0% | |
| ATACATTTACGATAACCTCA+GGG | - | chr3.2:68682391-68682410 | None:intergenic | 30.0% | |
| ATATTGTTTGCACTTGTGAT+TGG | + | chr3.2:68682259-68682278 | MS.gene29363:intron | 30.0% | |
| GCAAAAAAGAACAAAACCAA+GGG | - | chr3.2:68683669-68683688 | None:intergenic | 30.0% | |
| GTAAGATTAAATCCTACAGA+CGG | - | chr3.2:68683857-68683876 | None:intergenic | 30.0% | |
| GTCATTTAAAGAGATCTCAA+GGG | + | chr3.2:68683093-68683112 | MS.gene29363:intron | 30.0% | |
| TAAACACTTGTGACACTATT+TGG | - | chr3.2:68683608-68683627 | None:intergenic | 30.0% | |
| TAAGATTAAATCCTACAGAC+GGG | - | chr3.2:68683856-68683875 | None:intergenic | 30.0% | |
| TATTGTTTGCACTTGTGATT+GGG | + | chr3.2:68682260-68682279 | MS.gene29363:intron | 30.0% | |
| TCAACAATGGCTGAAATATT+GGG | + | chr3.2:68682904-68682923 | MS.gene29363:intron | 30.0% | |
| TGCAAAAAAGAACAAAACCA+AGG | - | chr3.2:68683670-68683689 | None:intergenic | 30.0% | |
| TGGAAATACGAAAAGGAATT+GGG | - | chr3.2:68682594-68682613 | None:intergenic | 30.0% | |
| TTCAACAATGGCTGAAATAT+TGG | + | chr3.2:68682903-68682922 | MS.gene29363:intron | 30.0% | |
| TTGGAAATACGAAAAGGAAT+TGG | - | chr3.2:68682595-68682614 | None:intergenic | 30.0% | |
| TTGTTCTTTCTGTATGAACA+GGG | - | chr3.2:68682698-68682717 | None:intergenic | 30.0% | |
| TTTCATAAGCTATCCATGAT+AGG | - | chr3.2:68683534-68683553 | None:intergenic | 30.0% | |
| TTTGTTCTTTCTGTATGAAC+AGG | - | chr3.2:68682699-68682718 | None:intergenic | 30.0% | |
| ! | ATCTGAAACATGAGAATAAG+AGG | + | chr3.2:68682790-68682809 | MS.gene29363:intron | 30.0% |
| ! | GTAGAGCAAAGATATTTTGT+TGG | + | chr3.2:68683323-68683342 | MS.gene29363:intron | 30.0% |
| ! | TAAAAAAATAGAAGGGGTGT+TGG | - | chr3.2:68682414-68682433 | None:intergenic | 30.0% |
| ! | TCAGTAAATTAATTTGACGG+AGG | - | chr3.2:68682474-68682493 | None:intergenic | 30.0% |
| ! | TGTCATTTAAAGAGATCTCA+AGG | + | chr3.2:68683092-68683111 | MS.gene29363:intron | 30.0% |
| ! | TTAAAGACAATTTTCACCCA+AGG | - | chr3.2:68682944-68682963 | None:intergenic | 30.0% |
| !! | AAATCAAGGTTGATGAGAAT+GGG | + | chr3.2:68681845-68681864 | MS.gene29363:CDS | 30.0% |
| !! | TACAATGTGTTCATTTTAGC+TGG | - | chr3.2:68682648-68682667 | None:intergenic | 30.0% |
| !! | TGGTTTGTTATAGGAAATTC+AGG | + | chr3.2:68681952-68681971 | MS.gene29363:intron | 30.0% |
| !!! | ATCTTTAACAGCTGCTTTTA+TGG | - | chr3.2:68684042-68684061 | None:intergenic | 30.0% |
| !!! | TGCTGTTTTATAACCTATCA+TGG | + | chr3.2:68683518-68683537 | MS.gene29363:intron | 30.0% |
| !!! | TTTTGTTGGTTTTATGGATG+GGG | + | chr3.2:68683337-68683356 | MS.gene29363:intron | 30.0% |
| AACATAGCAGCAAAAGATGA+TGG | - | chr3.2:68683753-68683772 | None:intergenic | 35.0% | |
| AATGACATCCATAACAAGCA+TGG | + | chr3.2:68682313-68682332 | MS.gene29363:intron | 35.0% | |
| AGGCCATTATTCTTTGATGA+AGG | + | chr3.2:68682826-68682845 | MS.gene29363:intron | 35.0% | |
| ATGGGTAAAAGGAAAGCAAA+TGG | + | chr3.2:68682104-68682123 | MS.gene29363:CDS | 35.0% | |
| ATTTAAAGAGATCTCAAGGG+AGG | + | chr3.2:68683096-68683115 | MS.gene29363:intron | 35.0% | |
| CAGAAAGAACAAATACCTTG+TGG | + | chr3.2:68682706-68682725 | MS.gene29363:intron | 35.0% | |
| CAGTACTTACGTGTTCTTAA+TGG | - | chr3.2:68682142-68682161 | None:intergenic | 35.0% | |
| CATTAAGAACACGTAAGTAC+TGG | + | chr3.2:68682140-68682159 | MS.gene29363:intron | 35.0% | |
| GAAAGAACAAATACCTTGTG+GGG | + | chr3.2:68682708-68682727 | MS.gene29363:intron | 35.0% | |
| GATACATTTACGATAACCTC+AGG | - | chr3.2:68682392-68682411 | None:intergenic | 35.0% | |
| GATCATGGCTTATATGATCA+TGG | - | chr3.2:68683420-68683439 | None:intergenic | 35.0% | |
| GGCATGATTCAAAAACCAAA+AGG | - | chr3.2:68683835-68683854 | None:intergenic | 35.0% | |
| TACATTTACGATAACCTCAG+GGG | - | chr3.2:68682390-68682409 | None:intergenic | 35.0% | |
| TGCAAATTTGTGTCTTTGTC+TGG | + | chr3.2:68682184-68682203 | MS.gene29363:intron | 35.0% | |
| TGTCATGAAGCTTCAAATCA+AGG | + | chr3.2:68681831-68681850 | MS.gene29363:CDS | 35.0% | |
| ! | AGTTCATTGGGTATTGCATT+TGG | + | chr3.2:68682525-68682544 | MS.gene29363:intron | 35.0% |
| ! | TACTGTTTCCATGCTTGTTA+TGG | - | chr3.2:68682324-68682343 | None:intergenic | 35.0% |
| ! | TTTAGCTGGCTTAAACATGA+TGG | - | chr3.2:68682634-68682653 | None:intergenic | 35.0% |
| !! | ATTTTAAGAGACTTTAGGGG+AGG | + | chr3.2:68683035-68683054 | MS.gene29363:intron | 35.0% |
| !! | CAAATCAAGGTTGATGAGAA+TGG | + | chr3.2:68681844-68681863 | MS.gene29363:CDS | 35.0% |
| !! | GCTTCTATGATTGGTAGTTT+TGG | + | chr3.2:68683908-68683927 | MS.gene29363:intron | 35.0% |
| !! | GGTATGCTTAAAAAGTGTTG+CGG | - | chr3.2:68683176-68683195 | None:intergenic | 35.0% |
| !! | GTATGCTTAAAAAGTGTTGC+GGG | - | chr3.2:68683175-68683194 | None:intergenic | 35.0% |
| !! | TATGCTTAAAAAGTGTTGCG+GGG | - | chr3.2:68683174-68683193 | None:intergenic | 35.0% |
| !! | TTTTGTAGAAGGTGGATTTC+TGG | + | chr3.2:68683284-68683303 | MS.gene29363:intron | 35.0% |
| !!! | GTAGGTCGTTTTTCATGTAT+TGG | + | chr3.2:68681932-68681951 | MS.gene29363:intron | 35.0% |
| AAAAGGAAAGCAAATGGAGG+AGG | + | chr3.2:68682110-68682129 | MS.gene29363:CDS | 40.0% | |
| ACAATGGCTGAAATATTGGG+TGG | + | chr3.2:68682907-68682926 | MS.gene29363:intron | 40.0% | |
| ACATGAGAATAAGAGGTCTG+CGG | + | chr3.2:68682797-68682816 | MS.gene29363:intron | 40.0% | |
| ACCATATTCTTCTGTGCTCT+AGG | + | chr3.2:68683226-68683245 | MS.gene29363:intron | 40.0% | |
| ACTTGTGATTGGGTGAAGAA+TGG | + | chr3.2:68682270-68682289 | MS.gene29363:intron | 40.0% | |
| AGAATCCTAATCGCTGGATT+TGG | - | chr3.2:68681691-68681710 | None:intergenic | 40.0% | |
| ATGGATGGGGTTTGAAGATA+TGG | + | chr3.2:68683350-68683369 | MS.gene29363:intron | 40.0% | |
| ATTGAGCATTTATCCCCACA+AGG | - | chr3.2:68682724-68682743 | None:intergenic | 40.0% | |
| CATCGGATCATTCTTATCGA+AGG | - | chr3.2:68681773-68681792 | None:intergenic | 40.0% | |
| CATGAAAAACGACCTACCAA+CGG | - | chr3.2:68681929-68681948 | None:intergenic | 40.0% | |
| CGGCCTTCATCAAAGAATAA+TGG | - | chr3.2:68682832-68682851 | None:intergenic | 40.0% | |
| CTTCGATAAGAATGATCCGA+TGG | + | chr3.2:68681771-68681790 | MS.gene29363:CDS | 40.0% | |
| GAAGAATGGTTATGTGCTTG+AGG | + | chr3.2:68682284-68682303 | MS.gene29363:intron | 40.0% | |
| GATAAGAATGATCCGATGGT+GGG | + | chr3.2:68681775-68681794 | MS.gene29363:CDS | 40.0% | |
| GGTAAAAGGAAAGCAAATGG+AGG | + | chr3.2:68682107-68682126 | MS.gene29363:CDS | 40.0% | |
| TAGAGCACAGAAGAATATGG+TGG | - | chr3.2:68683227-68683246 | None:intergenic | 40.0% | |
| TATCGAAGGATCCAACATTC+CGG | - | chr3.2:68681759-68681778 | None:intergenic | 40.0% | |
| TGGATGGGGTTTGAAGATAT+GGG | + | chr3.2:68683351-68683370 | MS.gene29363:intron | 40.0% | |
| TGGCACCCAAATCATGTATT+TGG | - | chr3.2:68682614-68682633 | None:intergenic | 40.0% | |
| TTTGACAGTGTCAAAGGCAA+GGG | - | chr3.2:68682451-68682470 | None:intergenic | 40.0% | |
| ! | ATCGTTTTGCAGCTACTGAA+TGG | + | chr3.2:68682085-68682104 | MS.gene29363:intron | 40.0% |
| ! | CTGCTATGTTTTCAACCTTC+TGG | + | chr3.2:68683763-68683782 | MS.gene29363:intron | 40.0% |
| ! | TCGTTTTGCAGCTACTGAAT+GGG | + | chr3.2:68682086-68682105 | MS.gene29363:intron | 40.0% |
| ! | TTTTCCTTCTTTTCCCTTCC+AGG | + | chr3.2:68683805-68683824 | MS.gene29363:intron | 40.0% |
| !!! | CGCTTTAAGACTTTTGGTTG+TGG | + | chr3.2:68681883-68681902 | MS.gene29363:CDS | 40.0% |
| !!! | GATGCTCGCTTTAAGACTTT+TGG | + | chr3.2:68681877-68681896 | MS.gene29363:CDS | 40.0% |
| !!! | TAAGAGGTCTGCGGTTTTTT+AGG | + | chr3.2:68682806-68682825 | MS.gene29363:intron | 40.0% |
| AACAAAACCAAGGGCCTGTT+TGG | - | chr3.2:68683660-68683679 | None:intergenic | 45.0% | |
| AGTTAATCCAAACAGGCCCT+TGG | + | chr3.2:68683650-68683669 | MS.gene29363:intron | 45.0% | |
| ATCGAAGGATCCAACATTCC+GGG | - | chr3.2:68681758-68681777 | None:intergenic | 45.0% | |
| ATGCTGCAGTGAAGCTTAAC+TGG | - | chr3.2:68684005-68684024 | None:intergenic | 45.0% | |
| ATTTACGATAACCTCAGGGG+AGG | - | chr3.2:68682387-68682406 | None:intergenic | 45.0% | |
| CAAAAACCAAAAGGTCCTCC+TGG | - | chr3.2:68683826-68683845 | None:intergenic | 45.0% | |
| CGATAAGAATGATCCGATGG+TGG | + | chr3.2:68681774-68681793 | MS.gene29363:CDS | 45.0% | |
| CGCAAAGAAACTCGTGCAAA+CGG | + | chr3.2:68681651-68681670 | MS.gene29363:CDS | 45.0% | |
| CTTCATGACATCACCACAAG+CGG | - | chr3.2:68681821-68681840 | None:intergenic | 45.0% | |
| GCAGCTACTGAATGGGTAAA+AGG | + | chr3.2:68682093-68682112 | MS.gene29363:intron | 45.0% | |
| GCCTAGAGCACAGAAGAATA+TGG | - | chr3.2:68683230-68683249 | None:intergenic | 45.0% | |
| GCTGAAATATTGGGTGGTTG+AGG | + | chr3.2:68682913-68682932 | MS.gene29363:intron | 45.0% | |
| GTTTGACAGTGTCAAAGGCA+AGG | - | chr3.2:68682452-68682471 | None:intergenic | 45.0% | |
| TGCAGTGAAGCTTAACTGGA+GGG | - | chr3.2:68684001-68684020 | None:intergenic | 45.0% | |
| TTATGAAGCTAAGCGTGCCT+CGG | + | chr3.2:68684061-68684080 | MS.gene29363:CDS | 45.0% | |
| TTCATGACATCACCACAAGC+GGG | - | chr3.2:68681820-68681839 | None:intergenic | 45.0% | |
| TTGAAGATATGGGCCCTGTT+TGG | + | chr3.2:68683361-68683380 | MS.gene29363:intron | 45.0% | |
| TTTGAATCATGCCCGTCTGT+AGG | + | chr3.2:68683842-68683861 | MS.gene29363:intron | 45.0% | |
| !! | TAAAAAGTGTTGCGGGGCAT+CGG | - | chr3.2:68683168-68683187 | None:intergenic | 45.0% |
| !! | AATAATAAAATTCAATAAAA+AGG | - | chr3.2:68682012-68682031 | None:intergenic | 5.0% |
| !! | ATAATAAAATTCAATAAAAA+GGG | - | chr3.2:68682011-68682030 | None:intergenic | 5.0% |
| AACCAAAAGGTCCTCCTGGA+AGG | - | chr3.2:68683822-68683841 | None:intergenic | 50.0% | |
| AATTACACTCACCTCCCCTG+AGG | + | chr3.2:68682373-68682392 | MS.gene29363:intron | 50.0% | |
| ACAAGACCAGTTCCCACCAT+CGG | - | chr3.2:68681790-68681809 | None:intergenic | 50.0% | |
| ACCAAAAGGTCCTCCTGGAA+GGG | - | chr3.2:68683821-68683840 | None:intergenic | 50.0% | |
| AGACGCCAAATCCAGCGATT+AGG | + | chr3.2:68681683-68681702 | MS.gene29363:CDS | 50.0% | |
| CGGAGGTTTGACAGTGTCAA+AGG | - | chr3.2:68682457-68682476 | None:intergenic | 50.0% | |
| CGTGGAAGAATCCTAATCGC+TGG | - | chr3.2:68681697-68681716 | None:intergenic | 50.0% | |
| CTGCAGTGAAGCTTAACTGG+AGG | - | chr3.2:68684002-68684021 | None:intergenic | 50.0% | |
| GCTATTGCTTCATCGTCCGT+TGG | + | chr3.2:68681910-68681929 | MS.gene29363:CDS | 50.0% | |
| GGTGGTTGAGGAGATACCTT+GGG | + | chr3.2:68682925-68682944 | MS.gene29363:intron | 50.0% | |
| TACGACAATCCCCGGAATGT+TGG | + | chr3.2:68681745-68681764 | MS.gene29363:CDS | 50.0% | |
| TCCACGATTCTACCACGAGA+GGG | + | chr3.2:68681711-68681730 | MS.gene29363:CDS | 50.0% | |
| TCCTCCTGGAAGGGAAAAGA+AGG | - | chr3.2:68683812-68683831 | None:intergenic | 50.0% | |
| TCGAAGGATCCAACATTCCG+GGG | - | chr3.2:68681757-68681776 | None:intergenic | 50.0% | |
| TGGATCACTACGACAATCCC+CGG | + | chr3.2:68681737-68681756 | MS.gene29363:CDS | 50.0% | |
| TTCCACGATTCTACCACGAG+AGG | + | chr3.2:68681710-68681729 | MS.gene29363:CDS | 50.0% | |
| TTGCTTCATCGTCCGTTGGT+AGG | + | chr3.2:68681914-68681933 | MS.gene29363:intron | 50.0% | |
| ! | TCCTTCTTTTCCCTTCCAGG+AGG | + | chr3.2:68683808-68683827 | MS.gene29363:intron | 50.0% |
| !! | AATGATCCGATGGTGGGAAC+TGG | + | chr3.2:68681781-68681800 | MS.gene29363:CDS | 50.0% |
| !! | ATGGTGGGAACTGGTCTTGT+TGG | + | chr3.2:68681790-68681809 | MS.gene29363:CDS | 50.0% |
| ACCCTCTCGTGGTAGAATCG+TGG | - | chr3.2:68681715-68681734 | None:intergenic | 55.0% | |
| ACGATTCTACCACGAGAGGG+TGG | + | chr3.2:68681714-68681733 | MS.gene29363:CDS | 55.0% | |
| AGTGGCAGATTTGTCTCCCG+TGG | - | chr3.2:68684096-68684115 | None:intergenic | 55.0% | |
| ATTCTACCACGAGAGGGTGG+TGG | + | chr3.2:68681717-68681736 | MS.gene29363:CDS | 55.0% | |
| GACAGTGTCAAAGGCAAGGG+AGG | - | chr3.2:68682448-68682467 | None:intergenic | 55.0% | |
| GGGTGGTTGAGGAGATACCT+TGG | + | chr3.2:68682924-68682943 | MS.gene29363:intron | 55.0% | |
| ! | TCACTGCAGCATGCTTGCTG+AGG | + | chr3.2:68684013-68684032 | MS.gene29363:CDS | 55.0% |
| ! | TCCCTTCCAGGAGGACCTTT+TGG | + | chr3.2:68683817-68683836 | MS.gene29363:intron | 55.0% |
| AGTGATCCACCACCCTCTCG+TGG | - | chr3.2:68681726-68681745 | None:intergenic | 60.0% | |
| CTTGTTGGTGCACCCGCTTG+TGG | + | chr3.2:68681805-68681824 | MS.gene29363:CDS | 60.0% | |
| TAAGCGTGCCTCGGCTACTG+CGG | + | chr3.2:68684070-68684089 | MS.gene29363:CDS | 60.0% | |
| TGCCTCGGCTACTGCGGCCA+CGG | + | chr3.2:68684076-68684095 | MS.gene29363:CDS | 70.0% | |
| GCCTCGGCTACTGCGGCCAC+GGG | + | chr3.2:68684077-68684096 | MS.gene29363:CDS | 75.0% | |
| TCCCGTGGCCGCAGTAGCCG+AGG | - | chr3.2:68684081-68684100 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 68681640 | 68684121 | 68681640 | ID=MS.gene29363 |
| chr3.2 | mRNA | 68681640 | 68684121 | 68681640 | ID=MS.gene29363.t1;Parent=MS.gene29363 |
| chr3.2 | exon | 68681640 | 68681931 | 68681640 | ID=MS.gene29363.t1.exon1;Parent=MS.gene29363.t1 |
| chr3.2 | CDS | 68681640 | 68681931 | 68681640 | ID=cds.MS.gene29363.t1;Parent=MS.gene29363.t1 |
| chr3.2 | exon | 68682097 | 68682151 | 68682097 | ID=MS.gene29363.t1.exon2;Parent=MS.gene29363.t1 |
| chr3.2 | CDS | 68682097 | 68682151 | 68682097 | ID=cds.MS.gene29363.t1;Parent=MS.gene29363.t1 |
| chr3.2 | exon | 68683974 | 68684121 | 68683974 | ID=MS.gene29363.t1.exon3;Parent=MS.gene29363.t1 |
| chr3.2 | CDS | 68683974 | 68684121 | 68683974 | ID=cds.MS.gene29363.t1;Parent=MS.gene29363.t1 |
| Gene Sequence |
| Protein sequence |
