Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25969.t1 | XP_003601257.1 | 97.6 | 164 | 4 | 0 | 1 | 164 | 1 | 164 | 1.80E-83 | 318.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25969.t1 | O49627 | 77.5 | 160 | 34 | 2 | 5 | 163 | 7 | 165 | 1.4e-60 | 233.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25969.t1 | B7FHC6 | 97.6 | 164 | 4 | 0 | 1 | 164 | 1 | 164 | 1.3e-83 | 318.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene06042 | MS.gene25969 | -0.813353 | 2.67E-51 | -1.69E-46 |
| MS.gene061044 | MS.gene25969 | -0.807336 | 5.31E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene25969 | MS.gene29101 | PPI |
| MS.gene25969 | MS.gene29099 | PPI |
| MS.gene25969 | MS.gene61049 | PPI |
| MS.gene25969 | MS.gene069794 | PPI |
| MS.gene83301 | MS.gene25969 | PPI |
| MS.gene25969 | MS.gene29054 | PPI |
| MS.gene25969 | MS.gene35660 | PPI |
| MS.gene25969 | MS.gene031844 | PPI |
| MS.gene25969 | MS.gene29055 | PPI |
| MS.gene009043 | MS.gene25969 | PPI |
| MS.gene25969 | MS.gene70632 | PPI |
| MS.gene25969 | MS.gene031845 | PPI |
| MS.gene022304 | MS.gene25969 | PPI |
| MS.gene25969 | MS.gene038497 | PPI |
| MS.gene25969 | MS.gene059021 | PPI |
| MS.gene038024 | MS.gene25969 | PPI |
| MS.gene25969 | MS.gene29363 | PPI |
| MS.gene94805 | MS.gene25969 | PPI |
| MS.gene30769 | MS.gene25969 | PPI |
| MS.gene25969 | MS.gene009043 | PPI |
| MS.gene25969 | MS.gene009053 | PPI |
| MS.gene24026 | MS.gene25969 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25969.t1 | MTR_3g077720 | 97.561 | 164 | 4 | 0 | 1 | 164 | 1 | 164 | 3.71e-120 | 336 |
| MS.gene25969.t1 | MTR_3g077730 | 87.023 | 131 | 15 | 1 | 32 | 160 | 5 | 135 | 2.88e-77 | 227 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25969.t1 | AT4G22220 | 80.392 | 153 | 28 | 2 | 5 | 156 | 7 | 158 | 9.46e-85 | 246 |
| MS.gene25969.t1 | AT4G04080 | 70.253 | 158 | 45 | 2 | 1 | 157 | 1 | 157 | 2.16e-79 | 233 |
| MS.gene25969.t1 | AT3G01020 | 72.662 | 139 | 38 | 0 | 26 | 164 | 25 | 163 | 3.86e-71 | 212 |
Find 46 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGTACTTACGTGTTCTTAA+TGG | 0.261409 | 3.3:-65928231 | None:intergenic |
| GCAGCTACTGAATGGGTAAA+AGG | 0.280013 | 3.3:+65928185 | MS.gene25969:intron |
| GATGCTCGCTTTAAGACTTT+TGG | 0.312604 | 3.3:+65927970 | MS.gene25969:CDS |
| ATGCTGCAGTGAAGCTTAAC+TGG | 0.354352 | 3.3:-65930069 | None:intergenic |
| AGACGCCAAATCCAGCGATT+AGG | 0.369036 | 3.3:+65927776 | MS.gene25969:CDS |
| AGAATCCTAATCGCTGGATT+TGG | 0.371565 | 3.3:-65927781 | None:intergenic |
| TATCGAAGGATCCAACATTC+CGG | 0.389446 | 3.3:-65927849 | None:intergenic |
| CAAATCAAGGTTGATGAGAA+TGG | 0.396788 | 3.3:+65927937 | MS.gene25969:CDS |
| ATCGAAGGATCCAACATTCC+GGG | 0.431036 | 3.3:-65927848 | None:intergenic |
| TGCCTCGGCTACTGCGGCCA+CGG | 0.446467 | 3.3:+65930143 | MS.gene25969:CDS |
| ATGGTGGGAACTGGTCTTGT+TGG | 0.461756 | 3.3:+65927883 | MS.gene25969:CDS |
| AAATCAAGGTTGATGAGAAT+GGG | 0.463058 | 3.3:+65927938 | MS.gene25969:CDS |
| CGCAAAGAAACTCGTGCAAA+CGG | 0.463462 | 3.3:+65927744 | MS.gene25969:CDS |
| AATGATCCGATGGTGGGAAC+TGG | 0.473170 | 3.3:+65927874 | MS.gene25969:CDS |
| TACGACAATCCCCGGAATGT+TGG | 0.510499 | 3.3:+65927838 | MS.gene25969:CDS |
| GCCTCGGCTACTGCGGCCAC+GGG | 0.517239 | 3.3:+65930144 | MS.gene25969:CDS |
| TGTCATGAAGCTTCAAATCA+AGG | 0.528073 | 3.3:+65927924 | MS.gene25969:CDS |
| GCTATTGCTTCATCGTCCGT+TGG | 0.529119 | 3.3:+65928003 | MS.gene25969:CDS |
| CGTGGAAGAATCCTAATCGC+TGG | 0.531980 | 3.3:-65927787 | None:intergenic |
| ATGGGTAAAAGGAAAGCAAA+TGG | 0.536082 | 3.3:+65928196 | MS.gene25969:CDS |
| TGCAGTGAAGCTTAACTGGC+GGG | 0.542392 | 3.3:-65930065 | None:intergenic |
| TCCCGTGGCCGCAGTAGCCG+AGG | 0.550070 | 3.3:-65930145 | None:intergenic |
| CGATAAGAATGATCCGATGG+TGG | 0.569162 | 3.3:+65927867 | MS.gene25969:CDS |
| TTATGAAGCTAAGCGTGCCT+CGG | 0.575006 | 3.3:+65930128 | MS.gene25969:CDS |
| TGGATCACTACGACAATCCC+CGG | 0.588923 | 3.3:+65927830 | MS.gene25969:CDS |
| CTTCATGACATCACCACAAG+CGG | 0.590457 | 3.3:-65927911 | None:intergenic |
| ATTCTACCACGAGAGGGTGG+TGG | 0.593190 | 3.3:+65927810 | MS.gene25969:CDS |
| TAAGCGTGCCTCGGCTACTG+CGG | 0.598393 | 3.3:+65930137 | MS.gene25969:CDS |
| TTCATGACATCACCACAAGC+GGG | 0.602959 | 3.3:-65927910 | None:intergenic |
| AAAAGGAAAGCAAATGGAGG+AGG | 0.604892 | 3.3:+65928202 | MS.gene25969:CDS |
| CATCGGATCATTCTTATCGA+AGG | 0.605249 | 3.3:-65927863 | None:intergenic |
| ACAAGACCAGTTCCCACCAT+CGG | 0.608536 | 3.3:-65927880 | None:intergenic |
| TCACTGCAGCATGCTTGCTG+AGG | 0.608636 | 3.3:+65930080 | MS.gene25969:CDS |
| GATAAGAATGATCCGATGGT+GGG | 0.625202 | 3.3:+65927868 | MS.gene25969:CDS |
| TCCACGATTCTACCACGAGA+GGG | 0.625238 | 3.3:+65927804 | MS.gene25969:CDS |
| TCGAAGGATCCAACATTCCG+GGG | 0.626085 | 3.3:-65927847 | None:intergenic |
| AGTGGCAGATTTGTCTCCCG+TGG | 0.628353 | 3.3:-65930160 | None:intergenic |
| CTGCAGTGAAGCTTAACTGG+CGG | 0.631259 | 3.3:-65930066 | None:intergenic |
| ACCCTCTCGTGGTAGAATCG+TGG | 0.631852 | 3.3:-65927805 | None:intergenic |
| CTTCGATAAGAATGATCCGA+TGG | 0.633992 | 3.3:+65927864 | MS.gene25969:CDS |
| CTTGTTGGTGCACCCGCTTG+TGG | 0.637545 | 3.3:+65927898 | MS.gene25969:CDS |
| AGTGATCCACCACCCTCTCG+TGG | 0.652272 | 3.3:-65927816 | None:intergenic |
| TTCCACGATTCTACCACGAG+AGG | 0.658430 | 3.3:+65927803 | MS.gene25969:CDS |
| CAATGGAAGAAATCATGCAG+TGG | 0.672265 | 3.3:-65930178 | None:intergenic |
| GGTAAAAGGAAAGCAAATGG+AGG | 0.675966 | 3.3:+65928199 | MS.gene25969:CDS |
| ACGATTCTACCACGAGAGGG+TGG | 0.684824 | 3.3:+65927807 | MS.gene25969:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATCAAATTCAATAAAA+AGG | - | chr3.3:65928104-65928123 | None:intergenic | 10.0% |
| !! | ATAATCAAATTCAATAAAAA+GGG | - | chr3.3:65928103-65928122 | None:intergenic | 10.0% |
| !!! | TAACAATTTTTCATATAAAA+TGG | - | chr3.3:65928646-65928665 | None:intergenic | 10.0% |
| !! | CCAAAATATAATAAAACTTA+GGG | - | chr3.3:65929224-65929243 | None:intergenic | 15.0% |
| !!! | AAATTCAGGATTTTTTTTTT+AGG | + | chr3.3:65928059-65928078 | MS.gene25969:intron | 15.0% |
| !!! | AATTCAGGATTTTTTTTTTA+GGG | + | chr3.3:65928060-65928079 | MS.gene25969:intron | 15.0% |
| !!! | CCTAAGTTTTATTATATTTT+GGG | + | chr3.3:65929222-65929241 | MS.gene25969:intron | 15.0% |
| !!! | GATAATAGAGATTTAAAATA+AGG | + | chr3.3:65928952-65928971 | MS.gene25969:intron | 15.0% |
| !!! | TGCTATTTAAAAAAATAGAA+GGG | - | chr3.3:65928513-65928532 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAAGAAACCAGA+AGG | - | chr3.3:65929855-65929874 | None:intergenic | 20.0% |
| !! | AAATTAATAGCTTTCAACAA+TGG | + | chr3.3:65928980-65928999 | MS.gene25969:intron | 20.0% |
| !! | AATAAACTCTTTATTCAAAC+AGG | - | chr3.3:65929467-65929486 | None:intergenic | 20.0% |
| !! | ATAAACTCTTTATTCAAACA+GGG | - | chr3.3:65929466-65929485 | None:intergenic | 20.0% |
| !! | ATTGTCTATTATAAAACTAG+AGG | + | chr3.3:65929149-65929168 | MS.gene25969:intron | 20.0% |
| !! | CCCAAAATATAATAAAACTT+AGG | - | chr3.3:65929225-65929244 | None:intergenic | 20.0% |
| !! | GCTATTTAAAAAAATAGAAG+GGG | - | chr3.3:65928512-65928531 | None:intergenic | 20.0% |
| !! | TATTTCCAAATACATGATTT+GGG | + | chr3.3:65928696-65928715 | MS.gene25969:intron | 20.0% |
| !! | TTGTCTATTATAAAACTAGA+GGG | + | chr3.3:65929150-65929169 | MS.gene25969:intron | 20.0% |
| !!! | AAGATATTTTGTTGGTTTTA+TGG | + | chr3.3:65929420-65929439 | MS.gene25969:intron | 20.0% |
| !!! | AGTTTTAACAGATCAATTAA+CGG | + | chr3.3:65929073-65929092 | MS.gene25969:intron | 20.0% |
| !!! | ATCTATTTTAAGAGACTTTA+GGG | + | chr3.3:65929120-65929139 | MS.gene25969:intron | 20.0% |
| !!! | CCCTAAGTTTTATTATATTT+TGG | + | chr3.3:65929221-65929240 | MS.gene25969:intron | 20.0% |
| !!! | GTGCTATTTAAAAAAATAGA+AGG | - | chr3.3:65928514-65928533 | None:intergenic | 20.0% |
| !!! | GTTTCAGTAAATTAATTTGA+CGG | - | chr3.3:65928569-65928588 | None:intergenic | 20.0% |
| !!! | TATCTATTTTAAGAGACTTT+AGG | + | chr3.3:65929119-65929138 | MS.gene25969:intron | 20.0% |
| !!! | TTCTGAGTTAATAAGTTTTA+GGG | + | chr3.3:65928440-65928459 | MS.gene25969:intron | 20.0% |
| !!! | TTGTTAACAATTTCCTTTTT+TGG | - | chr3.3:65929286-65929305 | None:intergenic | 20.0% |
| ! | AATAAGTGCTTATATGATCA+TGG | - | chr3.3:65929509-65929528 | None:intergenic | 25.0% |
| ! | ACATTTCTTCTTGAAATTGA+TGG | + | chr3.3:65929342-65929361 | MS.gene25969:intron | 25.0% |
| ! | ATACATTTACAATAACCTCA+GGG | - | chr3.3:65928483-65928502 | None:intergenic | 25.0% |
| ! | ATGTATTTGGAAATACGAAA+AGG | - | chr3.3:65928691-65928710 | None:intergenic | 25.0% |
| ! | ATTAACGGTATTAACTTAGA+AGG | + | chr3.3:65929088-65929107 | MS.gene25969:intron | 25.0% |
| ! | ATTATTGTGAATCAGTTCAT+TGG | + | chr3.3:65928604-65928623 | MS.gene25969:intron | 25.0% |
| ! | CTCTATTATCATAATTCTCT+CGG | - | chr3.3:65928942-65928961 | None:intergenic | 25.0% |
| ! | GATAAATGCTCAATAAAAAG+AGG | + | chr3.3:65928820-65928839 | MS.gene25969:intron | 25.0% |
| ! | GTATTTCCAAATACATGATT+TGG | + | chr3.3:65928695-65928714 | MS.gene25969:intron | 25.0% |
| ! | TCAAATAAGTTAATCCAAAC+AGG | + | chr3.3:65929717-65929736 | MS.gene25969:intron | 25.0% |
| ! | TCAACTTGTCATCATTAAAA+AGG | - | chr3.3:65929784-65929803 | None:intergenic | 25.0% |
| ! | TCATATAAAATGGAATCCAA+AGG | - | chr3.3:65928636-65928655 | None:intergenic | 25.0% |
| ! | TGTCTATTATAAAACTAGAG+GGG | + | chr3.3:65929151-65929170 | MS.gene25969:intron | 25.0% |
| ! | TTAACGGTATTAACTTAGAA+GGG | + | chr3.3:65929089-65929108 | MS.gene25969:intron | 25.0% |
| ! | TTATTGTGAATCAGTTCATT+GGG | + | chr3.3:65928605-65928624 | MS.gene25969:intron | 25.0% |
| ! | TTTGTTAATGCTTCTATGAT+TGG | + | chr3.3:65929966-65929985 | MS.gene25969:intron | 25.0% |
| !! | TATATGAATTTTGTAGAAGG+TGG | + | chr3.3:65929365-65929384 | MS.gene25969:intron | 25.0% |
| !! | TGGTATATGAATTTTGTAGA+AGG | + | chr3.3:65929362-65929381 | MS.gene25969:intron | 25.0% |
| !!! | ATTTTGTTGGTTTTATGGAT+GGG | + | chr3.3:65929425-65929444 | MS.gene25969:intron | 25.0% |
| !!! | CTTTTTAAGCATACCAAAAA+AGG | + | chr3.3:65929270-65929289 | MS.gene25969:intron | 25.0% |
| !!! | GTTCTGAGTTAATAAGTTTT+AGG | + | chr3.3:65928439-65928458 | MS.gene25969:intron | 25.0% |
| !!! | TATTTTGTTGGTTTTATGGA+TGG | + | chr3.3:65929424-65929443 | MS.gene25969:intron | 25.0% |
| !!! | TCTATTTTAAGAGACTTTAG+GGG | + | chr3.3:65929121-65929140 | MS.gene25969:intron | 25.0% |
| !!! | TTCATGTATTGGTTTGTTAT+AGG | + | chr3.3:65928036-65928055 | MS.gene25969:intron | 25.0% |
| AAACACTTGTGACACTATTT+GGG | - | chr3.3:65929681-65929700 | None:intergenic | 30.0% | |
| AAATAGTGTCACAAGTGTTT+AGG | + | chr3.3:65929681-65929700 | MS.gene25969:intron | 30.0% | |
| AGAAAGAACAAATACCTTGT+GGG | + | chr3.3:65928797-65928816 | MS.gene25969:intron | 30.0% | |
| ATATTGTTTGCACTTGTGAT+TGG | + | chr3.3:65928351-65928370 | MS.gene25969:intron | 30.0% | |
| GATACATTTACAATAACCTC+AGG | - | chr3.3:65928484-65928503 | None:intergenic | 30.0% | |
| GCAAAAAAGAACAAAACCAA+GGG | - | chr3.3:65929743-65929762 | None:intergenic | 30.0% | |
| GTAAGATTAAATCCTACAGA+CGG | - | chr3.3:65929924-65929943 | None:intergenic | 30.0% | |
| GTCATTTAAAGAGATCTCAA+GGG | + | chr3.3:65929182-65929201 | MS.gene25969:intron | 30.0% | |
| TAAACACTTGTGACACTATT+TGG | - | chr3.3:65929682-65929701 | None:intergenic | 30.0% | |
| TAAGATTAAATCCTACAGAC+GGG | - | chr3.3:65929923-65929942 | None:intergenic | 30.0% | |
| TACATTTACAATAACCTCAG+GGG | - | chr3.3:65928482-65928501 | None:intergenic | 30.0% | |
| TATTGTTTGCACTTGTGATT+GGG | + | chr3.3:65928352-65928371 | MS.gene25969:intron | 30.0% | |
| TCAACAATGGCTGAAATATT+GGG | + | chr3.3:65928993-65929012 | MS.gene25969:intron | 30.0% | |
| TGCAAAAAAGAACAAAACCA+AGG | - | chr3.3:65929744-65929763 | None:intergenic | 30.0% | |
| TGGAAATACGAAAAGGAATT+GGG | - | chr3.3:65928684-65928703 | None:intergenic | 30.0% | |
| TTCAACAATGGCTGAAATAT+TGG | + | chr3.3:65928992-65929011 | MS.gene25969:intron | 30.0% | |
| TTGGAAATACGAAAAGGAAT+TGG | - | chr3.3:65928685-65928704 | None:intergenic | 30.0% | |
| TTGTTCTTTCTGTATGAACA+GGG | - | chr3.3:65928788-65928807 | None:intergenic | 30.0% | |
| TTTCATAAGCTATCCATGAT+AGG | - | chr3.3:65929608-65929627 | None:intergenic | 30.0% | |
| TTTGTTCTTTCTGTATGAAC+AGG | - | chr3.3:65928789-65928808 | None:intergenic | 30.0% | |
| ! | ATCTGAAACATGAGAATAAG+AGG | + | chr3.3:65928880-65928899 | MS.gene25969:intron | 30.0% |
| ! | GTAGAGCAAAGATATTTTGT+TGG | + | chr3.3:65929412-65929431 | MS.gene25969:intron | 30.0% |
| ! | TAAAAAAATAGAAGGGGTGT+TGG | - | chr3.3:65928506-65928525 | None:intergenic | 30.0% |
| ! | TCAGTAAATTAATTTGACGG+AGG | - | chr3.3:65928566-65928585 | None:intergenic | 30.0% |
| ! | TGTCATTTAAAGAGATCTCA+AGG | + | chr3.3:65929181-65929200 | MS.gene25969:intron | 30.0% |
| ! | TTAAAGACAATTTTCACCCA+AGG | - | chr3.3:65929033-65929052 | None:intergenic | 30.0% |
| !! | AAATCAAGGTTGATGAGAAT+GGG | + | chr3.3:65927938-65927957 | MS.gene25969:CDS | 30.0% |
| !! | TACAATGTGTTCATTTTAGC+TGG | - | chr3.3:65928738-65928757 | None:intergenic | 30.0% |
| !! | TGGTTTGTTATAGGAAATTC+AGG | + | chr3.3:65928045-65928064 | MS.gene25969:intron | 30.0% |
| !!! | ATCTTTAACAGCTGCTTTTA+TGG | - | chr3.3:65930109-65930128 | None:intergenic | 30.0% |
| !!! | TGCTGTTTTATAACCTATCA+TGG | + | chr3.3:65929592-65929611 | MS.gene25969:intron | 30.0% |
| !!! | TTTTGTTGGTTTTATGGATG+GGG | + | chr3.3:65929426-65929445 | MS.gene25969:intron | 30.0% |
| AACATAGCAGCAAAAGATGA+TGG | - | chr3.3:65929827-65929846 | None:intergenic | 35.0% | |
| AATGACATCCATAACAAGCA+TGG | + | chr3.3:65928405-65928424 | MS.gene25969:intron | 35.0% | |
| AGGCCATTATTCTTTGATGA+AGG | + | chr3.3:65928916-65928935 | MS.gene25969:intron | 35.0% | |
| ATGGGTAAAAGGAAAGCAAA+TGG | + | chr3.3:65928196-65928215 | MS.gene25969:CDS | 35.0% | |
| ATTTAAAGAGATCTCAAGGG+AGG | + | chr3.3:65929185-65929204 | MS.gene25969:intron | 35.0% | |
| CAGAAAGAACAAATACCTTG+TGG | + | chr3.3:65928796-65928815 | MS.gene25969:intron | 35.0% | |
| CAGTACTTACGTGTTCTTAA+TGG | - | chr3.3:65928234-65928253 | None:intergenic | 35.0% | |
| CATTAAGAACACGTAAGTAC+TGG | + | chr3.3:65928232-65928251 | MS.gene25969:intron | 35.0% | |
| GAAAGAACAAATACCTTGTG+GGG | + | chr3.3:65928798-65928817 | MS.gene25969:intron | 35.0% | |
| GGCATGATTCATAAACCAAA+AGG | - | chr3.3:65929902-65929921 | None:intergenic | 35.0% | |
| TGCAAATTTGTGTCTTTGTC+TGG | + | chr3.3:65928276-65928295 | MS.gene25969:intron | 35.0% | |
| TGTCATGAAGCTTCAAATCA+AGG | + | chr3.3:65927924-65927943 | MS.gene25969:CDS | 35.0% | |
| ! | TACTGTTTCCATGCTTGTTA+TGG | - | chr3.3:65928416-65928435 | None:intergenic | 35.0% |
| ! | TTTAGCTGGCTTAAACATGA+TGG | - | chr3.3:65928724-65928743 | None:intergenic | 35.0% |
| !! | ATTTTAAGAGACTTTAGGGG+AGG | + | chr3.3:65929124-65929143 | MS.gene25969:intron | 35.0% |
| !! | CAAATCAAGGTTGATGAGAA+TGG | + | chr3.3:65927937-65927956 | MS.gene25969:CDS | 35.0% |
| !! | GCTTCTATGATTGGTAGTTT+TGG | + | chr3.3:65929975-65929994 | MS.gene25969:intron | 35.0% |
| !! | GGTATGCTTAAAAAGTGTTG+CGG | - | chr3.3:65929265-65929284 | None:intergenic | 35.0% |
| !! | GTATGCTTAAAAAGTGTTGC+GGG | - | chr3.3:65929264-65929283 | None:intergenic | 35.0% |
| !! | TATGCTTAAAAAGTGTTGCG+GGG | - | chr3.3:65929263-65929282 | None:intergenic | 35.0% |
| !! | TTTTGTAGAAGGTGGATTTC+TGG | + | chr3.3:65929373-65929392 | MS.gene25969:intron | 35.0% |
| !!! | GTAGGTCGTTTTTCATGTAT+TGG | + | chr3.3:65928025-65928044 | MS.gene25969:intron | 35.0% |
| AAAAGGAAAGCAAATGGAGG+AGG | + | chr3.3:65928202-65928221 | MS.gene25969:CDS | 40.0% | |
| ACAATGGCTGAAATATTGGG+TGG | + | chr3.3:65928996-65929015 | MS.gene25969:intron | 40.0% | |
| ACATGAGAATAAGAGGTCTG+CGG | + | chr3.3:65928887-65928906 | MS.gene25969:intron | 40.0% | |
| ACCATATTCTTCTGTGCTCT+AGG | + | chr3.3:65929315-65929334 | MS.gene25969:intron | 40.0% | |
| ACTTGTGATTGGGTGAAGAA+TGG | + | chr3.3:65928362-65928381 | MS.gene25969:intron | 40.0% | |
| AGAATCCTAATCGCTGGATT+TGG | - | chr3.3:65927784-65927803 | None:intergenic | 40.0% | |
| ATGGATGGGGTTTGAAGATA+TGG | + | chr3.3:65929439-65929458 | MS.gene25969:intron | 40.0% | |
| ATTGAGCATTTATCCCCACA+AGG | - | chr3.3:65928814-65928833 | None:intergenic | 40.0% | |
| ATTTACAATAACCTCAGGGG+AGG | - | chr3.3:65928479-65928498 | None:intergenic | 40.0% | |
| CATCGGATCATTCTTATCGA+AGG | - | chr3.3:65927866-65927885 | None:intergenic | 40.0% | |
| CATGAAAAACGACCTACCAA+CGG | - | chr3.3:65928022-65928041 | None:intergenic | 40.0% | |
| CGGCCTTCATCAAAGAATAA+TGG | - | chr3.3:65928922-65928941 | None:intergenic | 40.0% | |
| CTTCGATAAGAATGATCCGA+TGG | + | chr3.3:65927864-65927883 | MS.gene25969:CDS | 40.0% | |
| GAAGAATGGTTATGTGCTTG+AGG | + | chr3.3:65928376-65928395 | MS.gene25969:intron | 40.0% | |
| GATAAGAATGATCCGATGGT+GGG | + | chr3.3:65927868-65927887 | MS.gene25969:CDS | 40.0% | |
| GGTAAAAGGAAAGCAAATGG+AGG | + | chr3.3:65928199-65928218 | MS.gene25969:CDS | 40.0% | |
| TAGAGCACAGAAGAATATGG+TGG | - | chr3.3:65929316-65929335 | None:intergenic | 40.0% | |
| TATCGAAGGATCCAACATTC+CGG | - | chr3.3:65927852-65927871 | None:intergenic | 40.0% | |
| TGGATGGGGTTTGAAGATAT+GGG | + | chr3.3:65929440-65929459 | MS.gene25969:intron | 40.0% | |
| TGGCACCCAAATCATGTATT+TGG | - | chr3.3:65928704-65928723 | None:intergenic | 40.0% | |
| TTTGACAGTGTCAAAGGCAA+GGG | - | chr3.3:65928543-65928562 | None:intergenic | 40.0% | |
| ! | AGTTCATTGGGTATTGCCTT+TGG | + | chr3.3:65928617-65928636 | MS.gene25969:intron | 40.0% |
| ! | ATCGTTTTGCAGCTACTGAA+TGG | + | chr3.3:65928177-65928196 | MS.gene25969:intron | 40.0% |
| ! | CTGCTATGTTTTCAACCTTC+TGG | + | chr3.3:65929837-65929856 | MS.gene25969:intron | 40.0% |
| ! | TCGTTTTGCAGCTACTGAAT+GGG | + | chr3.3:65928178-65928197 | MS.gene25969:intron | 40.0% |
| ! | TTTTCCTTCTTTTCCCTTCC+AGG | + | chr3.3:65929872-65929891 | MS.gene25969:intron | 40.0% |
| !!! | CGCTTTAAGACTTTTGGTTG+TGG | + | chr3.3:65927976-65927995 | MS.gene25969:CDS | 40.0% |
| !!! | GATGCTCGCTTTAAGACTTT+TGG | + | chr3.3:65927970-65927989 | MS.gene25969:CDS | 40.0% |
| !!! | TAAGAGGTCTGCGGTTTTTT+AGG | + | chr3.3:65928896-65928915 | MS.gene25969:intron | 40.0% |
| AACAAAACCAAGGGCCTGTT+TGG | - | chr3.3:65929734-65929753 | None:intergenic | 45.0% | |
| AGTTAATCCAAACAGGCCCT+TGG | + | chr3.3:65929724-65929743 | MS.gene25969:intron | 45.0% | |
| ATCGAAGGATCCAACATTCC+GGG | - | chr3.3:65927851-65927870 | None:intergenic | 45.0% | |
| ATGCTGCAGTGAAGCTTAAC+TGG | - | chr3.3:65930072-65930091 | None:intergenic | 45.0% | |
| CATAAACCAAAAGGTCCTCC+TGG | - | chr3.3:65929893-65929912 | None:intergenic | 45.0% | |
| CGATAAGAATGATCCGATGG+TGG | + | chr3.3:65927867-65927886 | MS.gene25969:CDS | 45.0% | |
| CGCAAAGAAACTCGTGCAAA+CGG | + | chr3.3:65927744-65927763 | MS.gene25969:CDS | 45.0% | |
| CTTCATGACATCACCACAAG+CGG | - | chr3.3:65927914-65927933 | None:intergenic | 45.0% | |
| GCAGCTACTGAATGGGTAAA+AGG | + | chr3.3:65928185-65928204 | MS.gene25969:intron | 45.0% | |
| GCCTAGAGCACAGAAGAATA+TGG | - | chr3.3:65929319-65929338 | None:intergenic | 45.0% | |
| GGTGGTTGAGTAGATACCTT+GGG | + | chr3.3:65929014-65929033 | MS.gene25969:intron | 45.0% | |
| GTTTGACAGTGTCAAAGGCA+AGG | - | chr3.3:65928544-65928563 | None:intergenic | 45.0% | |
| TATGAATCATGCCCGTCTGT+AGG | + | chr3.3:65929909-65929928 | MS.gene25969:intron | 45.0% | |
| TTATGAAGCTAAGCGTGCCT+CGG | + | chr3.3:65930128-65930147 | MS.gene25969:CDS | 45.0% | |
| TTCATGACATCACCACAAGC+GGG | - | chr3.3:65927913-65927932 | None:intergenic | 45.0% | |
| !! | TAAAAAGTGTTGCGGGGCAT+CGG | - | chr3.3:65929257-65929276 | None:intergenic | 45.0% |
| AACCAAAAGGTCCTCCTGGA+AGG | - | chr3.3:65929889-65929908 | None:intergenic | 50.0% | |
| AATTACACTCACCTCCCCTG+AGG | + | chr3.3:65928465-65928484 | MS.gene25969:intron | 50.0% | |
| ACAAGACCAGTTCCCACCAT+CGG | - | chr3.3:65927883-65927902 | None:intergenic | 50.0% | |
| ACCAAAAGGTCCTCCTGGAA+GGG | - | chr3.3:65929888-65929907 | None:intergenic | 50.0% | |
| AGACGCCAAATCCAGCGATT+AGG | + | chr3.3:65927776-65927795 | MS.gene25969:CDS | 50.0% | |
| CGGAGGTTTGACAGTGTCAA+AGG | - | chr3.3:65928549-65928568 | None:intergenic | 50.0% | |
| CGTGGAAGAATCCTAATCGC+TGG | - | chr3.3:65927790-65927809 | None:intergenic | 50.0% | |
| CTGCAGTGAAGCTTAACTGG+CGG | - | chr3.3:65930069-65930088 | None:intergenic | 50.0% | |
| GCTATTGCTTCATCGTCCGT+TGG | + | chr3.3:65928003-65928022 | MS.gene25969:CDS | 50.0% | |
| GGGTGGTTGAGTAGATACCT+TGG | + | chr3.3:65929013-65929032 | MS.gene25969:intron | 50.0% | |
| TACGACAATCCCCGGAATGT+TGG | + | chr3.3:65927838-65927857 | MS.gene25969:CDS | 50.0% | |
| TCCACGATTCTACCACGAGA+GGG | + | chr3.3:65927804-65927823 | MS.gene25969:CDS | 50.0% | |
| TCCTCCTGGAAGGGAAAAGA+AGG | - | chr3.3:65929879-65929898 | None:intergenic | 50.0% | |
| TCGAAGGATCCAACATTCCG+GGG | - | chr3.3:65927850-65927869 | None:intergenic | 50.0% | |
| TGCAGTGAAGCTTAACTGGC+GGG | - | chr3.3:65930068-65930087 | None:intergenic | 50.0% | |
| TGGATCACTACGACAATCCC+CGG | + | chr3.3:65927830-65927849 | MS.gene25969:CDS | 50.0% | |
| TTCCACGATTCTACCACGAG+AGG | + | chr3.3:65927803-65927822 | MS.gene25969:CDS | 50.0% | |
| TTGCTTCATCGTCCGTTGGT+AGG | + | chr3.3:65928007-65928026 | MS.gene25969:intron | 50.0% | |
| ! | TCCTTCTTTTCCCTTCCAGG+AGG | + | chr3.3:65929875-65929894 | MS.gene25969:intron | 50.0% |
| !! | AATGATCCGATGGTGGGAAC+TGG | + | chr3.3:65927874-65927893 | MS.gene25969:CDS | 50.0% |
| !! | ATGGTGGGAACTGGTCTTGT+TGG | + | chr3.3:65927883-65927902 | MS.gene25969:CDS | 50.0% |
| ACCCTCTCGTGGTAGAATCG+TGG | - | chr3.3:65927808-65927827 | None:intergenic | 55.0% | |
| ACGATTCTACCACGAGAGGG+TGG | + | chr3.3:65927807-65927826 | MS.gene25969:CDS | 55.0% | |
| AGTGGCAGATTTGTCTCCCG+TGG | - | chr3.3:65930163-65930182 | None:intergenic | 55.0% | |
| ATTCTACCACGAGAGGGTGG+TGG | + | chr3.3:65927810-65927829 | MS.gene25969:CDS | 55.0% | |
| GACAGTGTCAAAGGCAAGGG+AGG | - | chr3.3:65928540-65928559 | None:intergenic | 55.0% | |
| ! | TCACTGCAGCATGCTTGCTG+AGG | + | chr3.3:65930080-65930099 | MS.gene25969:CDS | 55.0% |
| ! | TCCCTTCCAGGAGGACCTTT+TGG | + | chr3.3:65929884-65929903 | MS.gene25969:intron | 55.0% |
| AGTGATCCACCACCCTCTCG+TGG | - | chr3.3:65927819-65927838 | None:intergenic | 60.0% | |
| CTTGTTGGTGCACCCGCTTG+TGG | + | chr3.3:65927898-65927917 | MS.gene25969:CDS | 60.0% | |
| TAAGCGTGCCTCGGCTACTG+CGG | + | chr3.3:65930137-65930156 | MS.gene25969:CDS | 60.0% | |
| TGCCTCGGCTACTGCGGCCA+CGG | + | chr3.3:65930143-65930162 | MS.gene25969:CDS | 70.0% | |
| GCCTCGGCTACTGCGGCCAC+GGG | + | chr3.3:65930144-65930163 | MS.gene25969:CDS | 75.0% | |
| TCCCGTGGCCGCAGTAGCCG+AGG | - | chr3.3:65930148-65930167 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 65927733 | 65930188 | 65927733 | ID=MS.gene25969 |
| chr3.3 | mRNA | 65927733 | 65930188 | 65927733 | ID=MS.gene25969.t1;Parent=MS.gene25969 |
| chr3.3 | exon | 65927733 | 65928024 | 65927733 | ID=MS.gene25969.t1.exon1;Parent=MS.gene25969.t1 |
| chr3.3 | CDS | 65927733 | 65928024 | 65927733 | ID=cds.MS.gene25969.t1;Parent=MS.gene25969.t1 |
| chr3.3 | exon | 65928189 | 65928243 | 65928189 | ID=MS.gene25969.t1.exon2;Parent=MS.gene25969.t1 |
| chr3.3 | CDS | 65928189 | 65928243 | 65928189 | ID=cds.MS.gene25969.t1;Parent=MS.gene25969.t1 |
| chr3.3 | exon | 65930041 | 65930188 | 65930041 | ID=MS.gene25969.t1.exon3;Parent=MS.gene25969.t1 |
| chr3.3 | CDS | 65930041 | 65930188 | 65930041 | ID=cds.MS.gene25969.t1;Parent=MS.gene25969.t1 |
| Gene Sequence |
| Protein sequence |
