Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70632.t1 | XP_003601257.1 | 97.6 | 164 | 4 | 0 | 1 | 164 | 1 | 164 | 1.80E-83 | 318.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70632.t1 | O49627 | 77.5 | 160 | 34 | 2 | 5 | 163 | 7 | 165 | 1.4e-60 | 233.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70632.t1 | B7FHC6 | 97.6 | 164 | 4 | 0 | 1 | 164 | 1 | 164 | 1.3e-83 | 318.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene069794 | MS.gene70632 | PPI |
| MS.gene022304 | MS.gene70632 | PPI |
| MS.gene70632 | MS.gene29055 | PPI |
| MS.gene29099 | MS.gene70632 | PPI |
| MS.gene038024 | MS.gene70632 | PPI |
| MS.gene031845 | MS.gene70632 | PPI |
| MS.gene94805 | MS.gene70632 | PPI |
| MS.gene70632 | MS.gene009053 | PPI |
| MS.gene70632 | MS.gene059021 | PPI |
| MS.gene038497 | MS.gene70632 | PPI |
| MS.gene30769 | MS.gene70632 | PPI |
| MS.gene25969 | MS.gene70632 | PPI |
| MS.gene70632 | MS.gene29101 | PPI |
| MS.gene70632 | MS.gene61049 | PPI |
| MS.gene83301 | MS.gene70632 | PPI |
| MS.gene24026 | MS.gene70632 | PPI |
| MS.gene35660 | MS.gene70632 | PPI |
| MS.gene70632 | MS.gene29054 | PPI |
| MS.gene009043 | MS.gene70632 | PPI |
| MS.gene70632 | MS.gene031844 | PPI |
| MS.gene29363 | MS.gene70632 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70632.t1 | MTR_3g077720 | 97.561 | 164 | 4 | 0 | 1 | 164 | 1 | 164 | 3.71e-120 | 336 |
| MS.gene70632.t1 | MTR_3g077730 | 87.023 | 131 | 15 | 1 | 32 | 160 | 5 | 135 | 2.88e-77 | 227 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70632.t1 | AT4G22220 | 80.392 | 153 | 28 | 2 | 5 | 156 | 7 | 158 | 9.46e-85 | 246 |
| MS.gene70632.t1 | AT4G04080 | 70.253 | 158 | 45 | 2 | 1 | 157 | 1 | 157 | 2.16e-79 | 233 |
| MS.gene70632.t1 | AT3G01020 | 72.662 | 139 | 38 | 0 | 26 | 164 | 25 | 163 | 3.86e-71 | 212 |
Find 46 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCGAAGGATCCAACATTTC+GGG | 0.257939 | 3.1:-63865559 | None:intergenic |
| CAGTACTTACGTGTTCTTAA+TGG | 0.261409 | 3.1:-63865946 | None:intergenic |
| GCAGCTACTGAATGGGTAAA+AGG | 0.280013 | 3.1:+63865900 | MS.gene70632:intron |
| GATGCTCGCTTTAAGACTTT+TGG | 0.312604 | 3.1:+63865681 | MS.gene70632:CDS |
| TATCGAAGGATCCAACATTT+CGG | 0.324398 | 3.1:-63865560 | None:intergenic |
| ATGCTGCAGTGAAGCTTAAC+TGG | 0.354352 | 3.1:-63867796 | None:intergenic |
| AGACGCCAAATCCAGCGATT+AGG | 0.369036 | 3.1:+63865487 | MS.gene70632:CDS |
| AGAATCCTAATCGCTGGATT+TGG | 0.371565 | 3.1:-63865492 | None:intergenic |
| CAAATCAAGGTTGATGAGAA+TGG | 0.396788 | 3.1:+63865648 | MS.gene70632:CDS |
| TGCCTCGGCTACTGCGGCCA+CGG | 0.446467 | 3.1:+63867870 | MS.gene70632:CDS |
| ATGGTGGGAACTGGTCTTGT+TGG | 0.461756 | 3.1:+63865594 | MS.gene70632:CDS |
| AAATCAAGGTTGATGAGAAT+GGG | 0.463058 | 3.1:+63865649 | MS.gene70632:CDS |
| CGCAAAGAAACTCGTGCAAA+CGG | 0.463462 | 3.1:+63865455 | MS.gene70632:CDS |
| AATGATCCGATGGTGGGAAC+TGG | 0.473170 | 3.1:+63865585 | MS.gene70632:CDS |
| GCCTCGGCTACTGCGGCCAC+GGG | 0.517239 | 3.1:+63867871 | MS.gene70632:CDS |
| TGTCATGAAGCTTCAAATCA+AGG | 0.528073 | 3.1:+63865635 | MS.gene70632:CDS |
| TACGACAATCCCCGAAATGT+TGG | 0.530745 | 3.1:+63865549 | MS.gene70632:CDS |
| CGTGGAAGAATCCTAATCGC+TGG | 0.531980 | 3.1:-63865498 | None:intergenic |
| ATGGGTAAAAGGAAAGCAAA+TGG | 0.536082 | 3.1:+63865911 | MS.gene70632:CDS |
| TGCAGTGAAGCTTAACTGGC+GGG | 0.542392 | 3.1:-63867792 | None:intergenic |
| TCCCGTGGCCGCAGTAGCCG+AGG | 0.550070 | 3.1:-63867872 | None:intergenic |
| CGATAAGAATGATCCGATGG+TGG | 0.569162 | 3.1:+63865578 | MS.gene70632:CDS |
| GCTATTGCTTCATCGTCCGT+TGG | 0.572466 | 3.1:+63865714 | MS.gene70632:CDS |
| TTATGAAGCTAAGCGTGCCT+CGG | 0.575006 | 3.1:+63867855 | MS.gene70632:CDS |
| CTTCATGACATCACCACAAG+CGG | 0.590457 | 3.1:-63865622 | None:intergenic |
| ATTCTACCACGAGAGGGTGG+TGG | 0.593190 | 3.1:+63865521 | MS.gene70632:CDS |
| TAAGCGTGCCTCGGCTACTG+CGG | 0.598393 | 3.1:+63867864 | MS.gene70632:CDS |
| TTCATGACATCACCACAAGC+GGG | 0.602959 | 3.1:-63865621 | None:intergenic |
| AAAAGGAAAGCAAATGGAGG+AGG | 0.604892 | 3.1:+63865917 | MS.gene70632:CDS |
| CATCGGATCATTCTTATCGA+AGG | 0.605249 | 3.1:-63865574 | None:intergenic |
| ACAAGACCAGTTCCCACCAT+CGG | 0.608536 | 3.1:-63865591 | None:intergenic |
| TCACTGCAGCATGCTTGCTG+AGG | 0.608636 | 3.1:+63867807 | MS.gene70632:CDS |
| TCGAAGGATCCAACATTTCG+GGG | 0.618047 | 3.1:-63865558 | None:intergenic |
| GATAAGAATGATCCGATGGT+GGG | 0.625202 | 3.1:+63865579 | MS.gene70632:CDS |
| TCCACGATTCTACCACGAGA+GGG | 0.625238 | 3.1:+63865515 | MS.gene70632:CDS |
| AGTGGCAGATTTGTCTCCCG+TGG | 0.628353 | 3.1:-63867887 | None:intergenic |
| CTGCAGTGAAGCTTAACTGG+CGG | 0.631259 | 3.1:-63867793 | None:intergenic |
| ACCCTCTCGTGGTAGAATCG+TGG | 0.631852 | 3.1:-63865516 | None:intergenic |
| CTTCGATAAGAATGATCCGA+TGG | 0.633992 | 3.1:+63865575 | MS.gene70632:CDS |
| CTTGTTGGTGCACCCGCTTG+TGG | 0.637545 | 3.1:+63865609 | MS.gene70632:CDS |
| AGTGATCCACCACCCTCTCG+TGG | 0.652272 | 3.1:-63865527 | None:intergenic |
| TTCCACGATTCTACCACGAG+AGG | 0.658430 | 3.1:+63865514 | MS.gene70632:CDS |
| CAATGGAAGAAATCATGCAG+TGG | 0.672265 | 3.1:-63867905 | None:intergenic |
| AACGGACGATGAAGCAATAG+CGG | 0.675366 | 3.1:-63865712 | None:intergenic |
| GGTAAAAGGAAAGCAAATGG+AGG | 0.675966 | 3.1:+63865914 | MS.gene70632:CDS |
| ACGATTCTACCACGAGAGGG+TGG | 0.684824 | 3.1:+63865518 | MS.gene70632:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATCAAATTCAATAAAA+AGG | - | chr3.1:63865819-63865838 | None:intergenic | 10.0% |
| !! | ATAATCAAATTCAATAAAAA+GGG | - | chr3.1:63865818-63865837 | None:intergenic | 10.0% |
| !!! | ACAATTTTTCATATAAAAAT+TGG | - | chr3.1:63866361-63866380 | None:intergenic | 10.0% |
| !! | CCAAAATATAATAAAACTTA+GGG | - | chr3.1:63866942-63866961 | None:intergenic | 15.0% |
| !!! | CAGGATTTTTTTTTTTTTTA+GGG | + | chr3.1:63865775-63865794 | MS.gene70632:intron | 15.0% |
| !!! | CCTAAGTTTTATTATATTTT+GGG | + | chr3.1:63866940-63866959 | MS.gene70632:intron | 15.0% |
| !!! | GATAATAGAGATTTAAAATA+AGG | + | chr3.1:63866669-63866688 | MS.gene70632:intron | 15.0% |
| !!! | TCAGGATTTTTTTTTTTTTT+AGG | + | chr3.1:63865774-63865793 | MS.gene70632:intron | 15.0% |
| !!! | TGCTATTTAAAAAAATAGAA+GGG | - | chr3.1:63866228-63866247 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAAGAAACCAGA+AGG | - | chr3.1:63867573-63867592 | None:intergenic | 20.0% |
| !! | AAATTAATAGCTTTCAACAA+TGG | + | chr3.1:63866698-63866717 | MS.gene70632:intron | 20.0% |
| !! | AATAAACTCTTTATTCAAAC+AGG | - | chr3.1:63867185-63867204 | None:intergenic | 20.0% |
| !! | ATAAACTCTTTATTCAAACA+GGG | - | chr3.1:63867184-63867203 | None:intergenic | 20.0% |
| !! | ATATAAAAATTGGAATCCAA+AGG | - | chr3.1:63866351-63866370 | None:intergenic | 20.0% |
| !! | ATTGTCTATTATAAAACTAG+AGG | + | chr3.1:63866867-63866886 | MS.gene70632:intron | 20.0% |
| !! | CCCAAAATATAATAAAACTT+AGG | - | chr3.1:63866943-63866962 | None:intergenic | 20.0% |
| !! | GCTATTTAAAAAAATAGAAG+GGG | - | chr3.1:63866227-63866246 | None:intergenic | 20.0% |
| !! | TATTTCCAAATACATGATTT+GGG | + | chr3.1:63866413-63866432 | MS.gene70632:intron | 20.0% |
| !! | TTGTCTATTATAAAACTAGA+GGG | + | chr3.1:63866868-63866887 | MS.gene70632:intron | 20.0% |
| !!! | AAGATATTTTGTTGGTTTTA+TGG | + | chr3.1:63867138-63867157 | MS.gene70632:intron | 20.0% |
| !!! | AGTTTTAACAGATCAATTAA+CGG | + | chr3.1:63866791-63866810 | MS.gene70632:intron | 20.0% |
| !!! | ATCTATTTTAAGAGACTTTA+GGG | + | chr3.1:63866838-63866857 | MS.gene70632:intron | 20.0% |
| !!! | CCCTAAGTTTTATTATATTT+TGG | + | chr3.1:63866939-63866958 | MS.gene70632:intron | 20.0% |
| !!! | GTGCTATTTAAAAAAATAGA+AGG | - | chr3.1:63866229-63866248 | None:intergenic | 20.0% |
| !!! | GTTTCAGTAAATTAATTTGA+CGG | - | chr3.1:63866284-63866303 | None:intergenic | 20.0% |
| !!! | TATCTATTTTAAGAGACTTT+AGG | + | chr3.1:63866837-63866856 | MS.gene70632:intron | 20.0% |
| !!! | TTGTTAACAATTTCCTTTTT+TGG | - | chr3.1:63867004-63867023 | None:intergenic | 20.0% |
| ! | AATAAGTGCTTATATGATCA+TGG | - | chr3.1:63867227-63867246 | None:intergenic | 25.0% |
| ! | ACATTTCTTCTTGAAATTGA+TGG | + | chr3.1:63867060-63867079 | MS.gene70632:intron | 25.0% |
| ! | ATGTATTTGGAAATACGAAA+AGG | - | chr3.1:63866408-63866427 | None:intergenic | 25.0% |
| ! | ATTAACGGTATTAACTTAGA+AGG | + | chr3.1:63866806-63866825 | MS.gene70632:intron | 25.0% |
| ! | ATTATTGTGAATCAGTTCAT+TGG | + | chr3.1:63866319-63866338 | MS.gene70632:intron | 25.0% |
| ! | CTCTATTATCATAATTCTCT+CGG | - | chr3.1:63866659-63866678 | None:intergenic | 25.0% |
| ! | GATAAATGCTCAATAAAAAG+AGG | + | chr3.1:63866537-63866556 | MS.gene70632:intron | 25.0% |
| ! | GTATTTCCAAATACATGATT+TGG | + | chr3.1:63866412-63866431 | MS.gene70632:intron | 25.0% |
| ! | TCAAATAAGTTAATCCAAAC+AGG | + | chr3.1:63867435-63867454 | MS.gene70632:intron | 25.0% |
| ! | TCAACTTGTCATCATTAAAA+AGG | - | chr3.1:63867502-63867521 | None:intergenic | 25.0% |
| ! | TGTCTATTATAAAACTAGAG+GGG | + | chr3.1:63866869-63866888 | MS.gene70632:intron | 25.0% |
| ! | TTAACGGTATTAACTTAGAA+GGG | + | chr3.1:63866807-63866826 | MS.gene70632:intron | 25.0% |
| ! | TTATTGTGAATCAGTTCATT+GGG | + | chr3.1:63866320-63866339 | MS.gene70632:intron | 25.0% |
| ! | TTTGTTAATGCTTCTATGAT+TGG | + | chr3.1:63867693-63867712 | MS.gene70632:intron | 25.0% |
| !! | TATATGAATTTTGTAGAAGG+TGG | + | chr3.1:63867083-63867102 | MS.gene70632:intron | 25.0% |
| !! | TGGTATATGAATTTTGTAGA+AGG | + | chr3.1:63867080-63867099 | MS.gene70632:intron | 25.0% |
| !! | TTCTGAGCTAATAAGTTTTA+GGG | + | chr3.1:63866155-63866174 | MS.gene70632:intron | 25.0% |
| !!! | ATTTTGTTGGTTTTATGGAT+GGG | + | chr3.1:63867143-63867162 | MS.gene70632:intron | 25.0% |
| !!! | CTTTTTAAGCATACCAAAAA+AGG | + | chr3.1:63866988-63867007 | MS.gene70632:intron | 25.0% |
| !!! | TATTTTGTTGGTTTTATGGA+TGG | + | chr3.1:63867142-63867161 | MS.gene70632:intron | 25.0% |
| !!! | TCTATTTTAAGAGACTTTAG+GGG | + | chr3.1:63866839-63866858 | MS.gene70632:intron | 25.0% |
| !!! | TTCATGTATTGGTTTGTTAT+AGG | + | chr3.1:63865747-63865766 | MS.gene70632:intron | 25.0% |
| AAACACTTGTGACACTATTT+GGG | - | chr3.1:63867399-63867418 | None:intergenic | 30.0% | |
| AAATAGTGTCACAAGTGTTT+AGG | + | chr3.1:63867399-63867418 | MS.gene70632:intron | 30.0% | |
| AGAAAGAACAAATACCTTGT+GGG | + | chr3.1:63866514-63866533 | MS.gene70632:intron | 30.0% | |
| ATACATTTACGATAACCTCA+GGG | - | chr3.1:63866198-63866217 | None:intergenic | 30.0% | |
| ATATTGTTTGCACTTGTGAT+TGG | + | chr3.1:63866066-63866085 | MS.gene70632:intron | 30.0% | |
| GCAAAAAAGAACAAAACCAA+GGG | - | chr3.1:63867461-63867480 | None:intergenic | 30.0% | |
| GTAAGATTAAATCCTACAGA+CGG | - | chr3.1:63867651-63867670 | None:intergenic | 30.0% | |
| GTCATTTAAAGAGATCTCAA+GGG | + | chr3.1:63866900-63866919 | MS.gene70632:intron | 30.0% | |
| TAAACACTTGTGACACTATT+TGG | - | chr3.1:63867400-63867419 | None:intergenic | 30.0% | |
| TAAGATTAAATCCTACAGAC+GGG | - | chr3.1:63867650-63867669 | None:intergenic | 30.0% | |
| TATTGTTTGCACTTGTGATT+GGG | + | chr3.1:63866067-63866086 | MS.gene70632:intron | 30.0% | |
| TCAACAATGGCTGAAATATT+GGG | + | chr3.1:63866711-63866730 | MS.gene70632:intron | 30.0% | |
| TGCAAAAAAGAACAAAACCA+AGG | - | chr3.1:63867462-63867481 | None:intergenic | 30.0% | |
| TGGAAATACGAAAAGGAATT+GGG | - | chr3.1:63866401-63866420 | None:intergenic | 30.0% | |
| TTCAACAATGGCTGAAATAT+TGG | + | chr3.1:63866710-63866729 | MS.gene70632:intron | 30.0% | |
| TTGGAAATACGAAAAGGAAT+TGG | - | chr3.1:63866402-63866421 | None:intergenic | 30.0% | |
| TTGTTCTTTCTGTATGAACA+GGG | - | chr3.1:63866505-63866524 | None:intergenic | 30.0% | |
| TTTCATAAGCTATCCATGAT+AGG | - | chr3.1:63867326-63867345 | None:intergenic | 30.0% | |
| TTTGTTCTTTCTGTATGAAC+AGG | - | chr3.1:63866506-63866525 | None:intergenic | 30.0% | |
| ! | ATCTGAAACATGAGAATAAG+AGG | + | chr3.1:63866597-63866616 | MS.gene70632:intron | 30.0% |
| ! | GTAGAGCAAAGATATTTTGT+TGG | + | chr3.1:63867130-63867149 | MS.gene70632:intron | 30.0% |
| ! | TAAAAAAATAGAAGGGGTGT+TGG | - | chr3.1:63866221-63866240 | None:intergenic | 30.0% |
| ! | TCAGTAAATTAATTTGACGG+AGG | - | chr3.1:63866281-63866300 | None:intergenic | 30.0% |
| ! | TGTCATTTAAAGAGATCTCA+AGG | + | chr3.1:63866899-63866918 | MS.gene70632:intron | 30.0% |
| ! | TTAAAGACAATTTTCACCCA+AGG | - | chr3.1:63866751-63866770 | None:intergenic | 30.0% |
| !! | AAATCAAGGTTGATGAGAAT+GGG | + | chr3.1:63865649-63865668 | MS.gene70632:CDS | 30.0% |
| !! | GTTCTGAGCTAATAAGTTTT+AGG | + | chr3.1:63866154-63866173 | MS.gene70632:intron | 30.0% |
| !! | TACAATGTGTTCATTTTAGC+TGG | - | chr3.1:63866455-63866474 | None:intergenic | 30.0% |
| !! | TGGTTTGTTATAGGAAATTC+AGG | + | chr3.1:63865756-63865775 | MS.gene70632:intron | 30.0% |
| !!! | ATCTTTAACAGCTGCTTTTA+TGG | - | chr3.1:63867836-63867855 | None:intergenic | 30.0% |
| !!! | TGCTGTTTTATAACCTATCA+TGG | + | chr3.1:63867310-63867329 | MS.gene70632:intron | 30.0% |
| !!! | TTTTGTTGGTTTTATGGATG+GGG | + | chr3.1:63867144-63867163 | MS.gene70632:intron | 30.0% |
| AACATAGCAGCAAAAGATGA+TGG | - | chr3.1:63867545-63867564 | None:intergenic | 35.0% | |
| AATGACATCCATAACAAGCA+TGG | + | chr3.1:63866120-63866139 | MS.gene70632:intron | 35.0% | |
| AGGCCATTATTCTTTGATGA+AGG | + | chr3.1:63866633-63866652 | MS.gene70632:intron | 35.0% | |
| ATGGGTAAAAGGAAAGCAAA+TGG | + | chr3.1:63865911-63865930 | MS.gene70632:CDS | 35.0% | |
| ATTTAAAGAGATCTCAAGGG+AGG | + | chr3.1:63866903-63866922 | MS.gene70632:intron | 35.0% | |
| CAGAAAGAACAAATACCTTG+TGG | + | chr3.1:63866513-63866532 | MS.gene70632:intron | 35.0% | |
| CAGTACTTACGTGTTCTTAA+TGG | - | chr3.1:63865949-63865968 | None:intergenic | 35.0% | |
| CATTAAGAACACGTAAGTAC+TGG | + | chr3.1:63865947-63865966 | MS.gene70632:intron | 35.0% | |
| GAAAGAACAAATACCTTGTG+GGG | + | chr3.1:63866515-63866534 | MS.gene70632:intron | 35.0% | |
| GATACATTTACGATAACCTC+AGG | - | chr3.1:63866199-63866218 | None:intergenic | 35.0% | |
| GGCATGATTCATAAACCAAA+AGG | - | chr3.1:63867629-63867648 | None:intergenic | 35.0% | |
| TACATTTACGATAACCTCAG+GGG | - | chr3.1:63866197-63866216 | None:intergenic | 35.0% | |
| TATCGAAGGATCCAACATTT+CGG | - | chr3.1:63865563-63865582 | None:intergenic | 35.0% | |
| TGCAAATTTGTGTCTTTGTC+TGG | + | chr3.1:63865991-63866010 | MS.gene70632:intron | 35.0% | |
| TGTCATGAAGCTTCAAATCA+AGG | + | chr3.1:63865635-63865654 | MS.gene70632:CDS | 35.0% | |
| ! | TACTGTTTCCATGCTTGTTA+TGG | - | chr3.1:63866131-63866150 | None:intergenic | 35.0% |
| ! | TTTAGCTGGCTTAAACATGA+TGG | - | chr3.1:63866441-63866460 | None:intergenic | 35.0% |
| !! | ATTTTAAGAGACTTTAGGGG+AGG | + | chr3.1:63866842-63866861 | MS.gene70632:intron | 35.0% |
| !! | CAAATCAAGGTTGATGAGAA+TGG | + | chr3.1:63865648-63865667 | MS.gene70632:CDS | 35.0% |
| !! | GCTTCTATGATTGGTAGTTT+TGG | + | chr3.1:63867702-63867721 | MS.gene70632:intron | 35.0% |
| !! | GGTATGCTTAAAAAGTGTTG+CGG | - | chr3.1:63866983-63867002 | None:intergenic | 35.0% |
| !! | GTATGCTTAAAAAGTGTTGC+GGG | - | chr3.1:63866982-63867001 | None:intergenic | 35.0% |
| !! | TATGCTTAAAAAGTGTTGCG+GGG | - | chr3.1:63866981-63867000 | None:intergenic | 35.0% |
| !! | TTTTGTAGAAGGTGGATTTC+TGG | + | chr3.1:63867091-63867110 | MS.gene70632:intron | 35.0% |
| !!! | GTAGGTCGTTTTTCATGTAT+TGG | + | chr3.1:63865736-63865755 | MS.gene70632:intron | 35.0% |
| AAAAGGAAAGCAAATGGAGG+AGG | + | chr3.1:63865917-63865936 | MS.gene70632:CDS | 40.0% | |
| ACAATGGCTGAAATATTGGG+TGG | + | chr3.1:63866714-63866733 | MS.gene70632:intron | 40.0% | |
| ACATGAGAATAAGAGGTCTG+CGG | + | chr3.1:63866604-63866623 | MS.gene70632:intron | 40.0% | |
| ACCATATTCTTCTGTGCTCT+AGG | + | chr3.1:63867033-63867052 | MS.gene70632:intron | 40.0% | |
| ACTTGTGATTGGGTGAAGAA+TGG | + | chr3.1:63866077-63866096 | MS.gene70632:intron | 40.0% | |
| AGAATCCTAATCGCTGGATT+TGG | - | chr3.1:63865495-63865514 | None:intergenic | 40.0% | |
| ATCGAAGGATCCAACATTTC+GGG | - | chr3.1:63865562-63865581 | None:intergenic | 40.0% | |
| ATGGATGGGGTTTGAAGATA+TGG | + | chr3.1:63867157-63867176 | MS.gene70632:intron | 40.0% | |
| ATTGAGCATTTATCCCCACA+AGG | - | chr3.1:63866531-63866550 | None:intergenic | 40.0% | |
| CATCGGATCATTCTTATCGA+AGG | - | chr3.1:63865577-63865596 | None:intergenic | 40.0% | |
| CATGAAAAACGACCTACCAA+CGG | - | chr3.1:63865733-63865752 | None:intergenic | 40.0% | |
| CGGCCTTCATCAAAGAATAA+TGG | - | chr3.1:63866639-63866658 | None:intergenic | 40.0% | |
| CTTCGATAAGAATGATCCGA+TGG | + | chr3.1:63865575-63865594 | MS.gene70632:CDS | 40.0% | |
| GAAGAATGGTTATGTGCTTG+AGG | + | chr3.1:63866091-63866110 | MS.gene70632:intron | 40.0% | |
| GATAAGAATGATCCGATGGT+GGG | + | chr3.1:63865579-63865598 | MS.gene70632:CDS | 40.0% | |
| GGTAAAAGGAAAGCAAATGG+AGG | + | chr3.1:63865914-63865933 | MS.gene70632:CDS | 40.0% | |
| TAGAGCACAGAAGAATATGG+TGG | - | chr3.1:63867034-63867053 | None:intergenic | 40.0% | |
| TGGATGGGGTTTGAAGATAT+GGG | + | chr3.1:63867158-63867177 | MS.gene70632:intron | 40.0% | |
| TGGCACCCAAATCATGTATT+TGG | - | chr3.1:63866421-63866440 | None:intergenic | 40.0% | |
| TTTGACAGTGTCAAAGGCAA+GGG | - | chr3.1:63866258-63866277 | None:intergenic | 40.0% | |
| ! | AGTTCATTGGGTATTGCCTT+TGG | + | chr3.1:63866332-63866351 | MS.gene70632:intron | 40.0% |
| ! | ATCGTTTTGCAGCTACTGAA+TGG | + | chr3.1:63865892-63865911 | MS.gene70632:intron | 40.0% |
| ! | CTGCTATGTTTTCAACCTTC+TGG | + | chr3.1:63867555-63867574 | MS.gene70632:intron | 40.0% |
| ! | TCGTTTTGCAGCTACTGAAT+GGG | + | chr3.1:63865893-63865912 | MS.gene70632:intron | 40.0% |
| ! | TTTTCCTTCTTTTCCCTTCC+AGG | + | chr3.1:63867599-63867618 | MS.gene70632:intron | 40.0% |
| !!! | CGCTTTAAGACTTTTGGTTG+TGG | + | chr3.1:63865687-63865706 | MS.gene70632:CDS | 40.0% |
| !!! | GATGCTCGCTTTAAGACTTT+TGG | + | chr3.1:63865681-63865700 | MS.gene70632:CDS | 40.0% |
| !!! | TAAGAGGTCTGCGGTTTTTT+AGG | + | chr3.1:63866613-63866632 | MS.gene70632:intron | 40.0% |
| AACAAAACCAAGGGCCTGTT+TGG | - | chr3.1:63867452-63867471 | None:intergenic | 45.0% | |
| AACGGACGATGAAGCAATAG+CGG | - | chr3.1:63865715-63865734 | None:intergenic | 45.0% | |
| AGTTAATCCAAACAGGCCCT+TGG | + | chr3.1:63867442-63867461 | MS.gene70632:intron | 45.0% | |
| ATGCTGCAGTGAAGCTTAAC+TGG | - | chr3.1:63867799-63867818 | None:intergenic | 45.0% | |
| ATTTACGATAACCTCAGGGG+AGG | - | chr3.1:63866194-63866213 | None:intergenic | 45.0% | |
| CATAAACCAAAAGGTCCTCC+TGG | - | chr3.1:63867620-63867639 | None:intergenic | 45.0% | |
| CGATAAGAATGATCCGATGG+TGG | + | chr3.1:63865578-63865597 | MS.gene70632:CDS | 45.0% | |
| CGCAAAGAAACTCGTGCAAA+CGG | + | chr3.1:63865455-63865474 | MS.gene70632:CDS | 45.0% | |
| CTTCATGACATCACCACAAG+CGG | - | chr3.1:63865625-63865644 | None:intergenic | 45.0% | |
| GCAGCTACTGAATGGGTAAA+AGG | + | chr3.1:63865900-63865919 | MS.gene70632:intron | 45.0% | |
| GCCTAGAGCACAGAAGAATA+TGG | - | chr3.1:63867037-63867056 | None:intergenic | 45.0% | |
| GGTGGTTGAGTAGATACCTT+GGG | + | chr3.1:63866732-63866751 | MS.gene70632:intron | 45.0% | |
| GTTTGACAGTGTCAAAGGCA+AGG | - | chr3.1:63866259-63866278 | None:intergenic | 45.0% | |
| TACGACAATCCCCGAAATGT+TGG | + | chr3.1:63865549-63865568 | MS.gene70632:CDS | 45.0% | |
| TATGAATCATGCCCGTCTGT+AGG | + | chr3.1:63867636-63867655 | MS.gene70632:intron | 45.0% | |
| TCGAAGGATCCAACATTTCG+GGG | - | chr3.1:63865561-63865580 | None:intergenic | 45.0% | |
| TTATGAAGCTAAGCGTGCCT+CGG | + | chr3.1:63867855-63867874 | MS.gene70632:CDS | 45.0% | |
| TTCATGACATCACCACAAGC+GGG | - | chr3.1:63865624-63865643 | None:intergenic | 45.0% | |
| !! | TAAAAAGTGTTGCGGGGCAT+CGG | - | chr3.1:63866975-63866994 | None:intergenic | 45.0% |
| AACCAAAAGGTCCTCCTGGA+AGG | - | chr3.1:63867616-63867635 | None:intergenic | 50.0% | |
| AATTACACTCTCCTCCCCTG+AGG | + | chr3.1:63866180-63866199 | MS.gene70632:intron | 50.0% | |
| ACAAGACCAGTTCCCACCAT+CGG | - | chr3.1:63865594-63865613 | None:intergenic | 50.0% | |
| ACCAAAAGGTCCTCCTGGAA+GGG | - | chr3.1:63867615-63867634 | None:intergenic | 50.0% | |
| AGACGCCAAATCCAGCGATT+AGG | + | chr3.1:63865487-63865506 | MS.gene70632:CDS | 50.0% | |
| CGGAGGTTTGACAGTGTCAA+AGG | - | chr3.1:63866264-63866283 | None:intergenic | 50.0% | |
| CGTGGAAGAATCCTAATCGC+TGG | - | chr3.1:63865501-63865520 | None:intergenic | 50.0% | |
| CTGCAGTGAAGCTTAACTGG+CGG | - | chr3.1:63867796-63867815 | None:intergenic | 50.0% | |
| GCTATTGCTTCATCGTCCGT+TGG | + | chr3.1:63865714-63865733 | MS.gene70632:CDS | 50.0% | |
| GGGTGGTTGAGTAGATACCT+TGG | + | chr3.1:63866731-63866750 | MS.gene70632:intron | 50.0% | |
| TCCACGATTCTACCACGAGA+GGG | + | chr3.1:63865515-63865534 | MS.gene70632:CDS | 50.0% | |
| TCCTCCTGGAAGGGAAAAGA+AGG | - | chr3.1:63867606-63867625 | None:intergenic | 50.0% | |
| TGCAGTGAAGCTTAACTGGC+GGG | - | chr3.1:63867795-63867814 | None:intergenic | 50.0% | |
| TTCCACGATTCTACCACGAG+AGG | + | chr3.1:63865514-63865533 | MS.gene70632:CDS | 50.0% | |
| TTGCTTCATCGTCCGTTGGT+AGG | + | chr3.1:63865718-63865737 | MS.gene70632:intron | 50.0% | |
| ! | TCCTTCTTTTCCCTTCCAGG+AGG | + | chr3.1:63867602-63867621 | MS.gene70632:intron | 50.0% |
| !! | AATGATCCGATGGTGGGAAC+TGG | + | chr3.1:63865585-63865604 | MS.gene70632:CDS | 50.0% |
| !! | ATGGTGGGAACTGGTCTTGT+TGG | + | chr3.1:63865594-63865613 | MS.gene70632:CDS | 50.0% |
| ACCCTCTCGTGGTAGAATCG+TGG | - | chr3.1:63865519-63865538 | None:intergenic | 55.0% | |
| ACGATTCTACCACGAGAGGG+TGG | + | chr3.1:63865518-63865537 | MS.gene70632:CDS | 55.0% | |
| AGTGGCAGATTTGTCTCCCG+TGG | - | chr3.1:63867890-63867909 | None:intergenic | 55.0% | |
| ATTCTACCACGAGAGGGTGG+TGG | + | chr3.1:63865521-63865540 | MS.gene70632:CDS | 55.0% | |
| GACAGTGTCAAAGGCAAGGG+AGG | - | chr3.1:63866255-63866274 | None:intergenic | 55.0% | |
| ! | TCACTGCAGCATGCTTGCTG+AGG | + | chr3.1:63867807-63867826 | MS.gene70632:CDS | 55.0% |
| ! | TCCCTTCCAGGAGGACCTTT+TGG | + | chr3.1:63867611-63867630 | MS.gene70632:intron | 55.0% |
| AGTGATCCACCACCCTCTCG+TGG | - | chr3.1:63865530-63865549 | None:intergenic | 60.0% | |
| CTTGTTGGTGCACCCGCTTG+TGG | + | chr3.1:63865609-63865628 | MS.gene70632:CDS | 60.0% | |
| TAAGCGTGCCTCGGCTACTG+CGG | + | chr3.1:63867864-63867883 | MS.gene70632:CDS | 60.0% | |
| TGCCTCGGCTACTGCGGCCA+CGG | + | chr3.1:63867870-63867889 | MS.gene70632:CDS | 70.0% | |
| GCCTCGGCTACTGCGGCCAC+GGG | + | chr3.1:63867871-63867890 | MS.gene70632:CDS | 75.0% | |
| TCCCGTGGCCGCAGTAGCCG+AGG | - | chr3.1:63867875-63867894 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 63865444 | 63867915 | 63865444 | ID=MS.gene70632 |
| chr3.1 | mRNA | 63865444 | 63867915 | 63865444 | ID=MS.gene70632.t1;Parent=MS.gene70632 |
| chr3.1 | exon | 63865444 | 63865735 | 63865444 | ID=MS.gene70632.t1.exon1;Parent=MS.gene70632.t1 |
| chr3.1 | CDS | 63865444 | 63865735 | 63865444 | ID=cds.MS.gene70632.t1;Parent=MS.gene70632.t1 |
| chr3.1 | exon | 63865904 | 63865958 | 63865904 | ID=MS.gene70632.t1.exon2;Parent=MS.gene70632.t1 |
| chr3.1 | CDS | 63865904 | 63865958 | 63865904 | ID=cds.MS.gene70632.t1;Parent=MS.gene70632.t1 |
| chr3.1 | exon | 63867768 | 63867915 | 63867768 | ID=MS.gene70632.t1.exon3;Parent=MS.gene70632.t1 |
| chr3.1 | CDS | 63867768 | 63867915 | 63867768 | ID=cds.MS.gene70632.t1;Parent=MS.gene70632.t1 |
| Gene Sequence |
| Protein sequence |
