Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009043.t1 | XP_003601257.1 | 87.2 | 164 | 20 | 1 | 1 | 163 | 1 | 164 | 1.30E-70 | 275.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009043.t1 | Q8LR34 | 76.8 | 138 | 30 | 2 | 28 | 163 | 34 | 171 | 2.6e-51 | 203.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009043.t1 | B7FHC6 | 87.2 | 164 | 20 | 1 | 1 | 163 | 1 | 164 | 9.4e-71 | 275.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene009043 | MS.gene29055 | PPI |
| MS.gene009043 | MS.gene031845 | PPI |
| MS.gene83301 | MS.gene009043 | PPI |
| MS.gene009043 | MS.gene059021 | PPI |
| MS.gene009043 | MS.gene29363 | PPI |
| MS.gene009043 | MS.gene29099 | PPI |
| MS.gene022304 | MS.gene009043 | PPI |
| MS.gene009043 | MS.gene009053 | PPI |
| MS.gene009043 | MS.gene25969 | PPI |
| MS.gene038024 | MS.gene009043 | PPI |
| MS.gene94805 | MS.gene009043 | PPI |
| MS.gene30769 | MS.gene009043 | PPI |
| MS.gene009043 | MS.gene29101 | PPI |
| MS.gene009043 | MS.gene29054 | PPI |
| MS.gene009043 | MS.gene35660 | PPI |
| MS.gene009043 | MS.gene61049 | PPI |
| MS.gene009043 | MS.gene069794 | PPI |
| MS.gene009043 | MS.gene031844 | PPI |
| MS.gene25969 | MS.gene009043 | PPI |
| MS.gene009043 | MS.gene70632 | PPI |
| MS.gene24026 | MS.gene009043 | PPI |
| MS.gene009043 | MS.gene038497 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009043.t1 | MTR_3g077720 | 87.195 | 164 | 20 | 1 | 1 | 163 | 1 | 164 | 4.93e-103 | 292 |
| MS.gene009043.t1 | MTR_3g077730 | 80.153 | 131 | 23 | 2 | 32 | 159 | 5 | 135 | 6.88e-69 | 206 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009043.t1 | AT4G22220 | 69.281 | 153 | 44 | 3 | 5 | 155 | 7 | 158 | 2.90e-69 | 207 |
| MS.gene009043.t1 | AT4G04080 | 62.658 | 158 | 56 | 3 | 1 | 156 | 1 | 157 | 1.52e-66 | 200 |
| MS.gene009043.t1 | AT3G01020 | 60.976 | 164 | 60 | 2 | 1 | 163 | 3 | 163 | 4.63e-63 | 191 |
Find 49 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAATTAAGGTTGATGATAA+TGG | 0.228001 | 8.2:+36360000 | MS.gene009043:CDS |
| TGTCATGAAGTTTCAAATTA+AGG | 0.237273 | 8.2:+36359987 | MS.gene009043:CDS |
| AATCGCCAATTCCAGCAATT+AGG | 0.260997 | 8.2:+36359842 | MS.gene009043:CDS |
| CCGAAGATCTTTCTTATTGA+AGG | 0.314287 | 8.2:-36359929 | None:intergenic |
| GATTCTTGCTTTAAGACCTT+TGG | 0.331092 | 8.2:+36360033 | MS.gene009043:CDS |
| ATCGCCAATTCCAGCAATTA+GGG | 0.344413 | 8.2:+36359843 | MS.gene009043:CDS |
| ATGCTGCAGTGAAGCTTAAC+TGG | 0.354352 | 8.2:-36361537 | None:intergenic |
| TGCAGCTACTGAATGGGTTA+AGG | 0.358960 | 8.2:+36360230 | MS.gene009043:intron |
| GCGATTCAAACGACGCCGTT+TGG | 0.372016 | 8.2:-36359825 | None:intergenic |
| AGAACCCTAATTGCTGGAAT+TGG | 0.383969 | 8.2:-36359847 | None:intergenic |
| GCAGCTACTGAATGGGTTAA+GGG | 0.384513 | 8.2:+36360231 | MS.gene009043:intron |
| CTTCAATAAGAAAGATCTTC+GGG | 0.392132 | 8.2:+36359930 | MS.gene009043:CDS |
| CGTGGAAGAACCCTAATTGC+TGG | 0.397022 | 8.2:-36359853 | None:intergenic |
| ATTGAAGGATCCAACGTTCC+GGG | 0.412834 | 8.2:-36359914 | None:intergenic |
| TATTGAAGGATCCAACGTTC+CGG | 0.415466 | 8.2:-36359915 | None:intergenic |
| TGCCTCGGCTACTGCGGCCA+CGG | 0.446467 | 8.2:+36361611 | MS.gene009043:CDS |
| CGCAAAGAAACTCGTCCAAA+CGG | 0.447336 | 8.2:+36359810 | MS.gene009043:CDS |
| CCTTCAATAAGAAAGATCTT+CGG | 0.452805 | 8.2:+36359929 | MS.gene009043:CDS |
| TGCTTTAAGACCTTTGGATG+TGG | 0.461939 | 8.2:+36360039 | MS.gene009043:CDS |
| CTTCGGGAGGTGGGATCTGT+TGG | 0.484742 | 8.2:+36359946 | MS.gene009043:CDS |
| TAAGAAAGATCTTCGGGAGG+TGG | 0.491830 | 8.2:+36359936 | MS.gene009043:CDS |
| GCCTCGGCTACTGCGGCCAC+GGG | 0.517239 | 8.2:+36361612 | MS.gene009043:CDS |
| TACGAAAATCCCCGGAACGT+TGG | 0.529176 | 8.2:+36359904 | MS.gene009043:CDS |
| TGCAGTGAAGCTTAACTGGC+GGG | 0.542392 | 8.2:-36361533 | None:intergenic |
| TCCCGTGGCCGCAGTAGCCG+AGG | 0.550070 | 8.2:-36361613 | None:intergenic |
| AAGAAAGATCTTCGGGAGGT+GGG | 0.571174 | 8.2:+36359937 | MS.gene009043:CDS |
| GCTATTGCTTCATCGTCCGT+TGG | 0.572466 | 8.2:+36360066 | MS.gene009043:CDS |
| TTATGAAGCTAAGCGTGCCT+CGG | 0.575006 | 8.2:+36361596 | MS.gene009043:CDS |
| CTTCATGACATCACCACAAG+CGG | 0.586806 | 8.2:-36359974 | None:intergenic |
| ATTCTACCACGAGAGGGTGG+TGG | 0.593190 | 8.2:+36359876 | MS.gene009043:CDS |
| TTGAAGGATCCAACGTTCCG+GGG | 0.597622 | 8.2:-36359913 | None:intergenic |
| TAAGCGTGCCTCGGCTACTG+CGG | 0.598393 | 8.2:+36361605 | MS.gene009043:CDS |
| TTCATGACATCACCACAAGC+GGG | 0.599308 | 8.2:-36359973 | None:intergenic |
| TCACTGCAGCATGCTTGCTG+AGG | 0.608636 | 8.2:+36361548 | MS.gene009043:CDS |
| GGTTAAGGGAAAGCAAATTG+AGG | 0.612867 | 8.2:+36360245 | MS.gene009043:CDS |
| TCTGTTGGTGCACCCGCTTG+TGG | 0.618008 | 8.2:+36359961 | MS.gene009043:CDS |
| TGGATCACTACGAAAATCCC+CGG | 0.623098 | 8.2:+36359896 | MS.gene009043:CDS |
| TCCACGATTCTACCACGAGA+GGG | 0.625238 | 8.2:+36359870 | MS.gene009043:CDS |
| AGTGGCAGATTTGTCTCCCG+TGG | 0.628353 | 8.2:-36361628 | None:intergenic |
| CTGCAGTGAAGCTTAACTGG+CGG | 0.631259 | 8.2:-36361534 | None:intergenic |
| ACCCTCTCGTGGTAGAATCG+TGG | 0.631852 | 8.2:-36359871 | None:intergenic |
| AATAGCGGAACCACATCCAA+AGG | 0.639771 | 8.2:-36360049 | None:intergenic |
| AGTGATCCACCACCCTCTCG+TGG | 0.652272 | 8.2:-36359882 | None:intergenic |
| TTCCACGATTCTACCACGAG+AGG | 0.656410 | 8.2:+36359869 | MS.gene009043:CDS |
| CAATGGGAGAAATCATGCAG+TGG | 0.672265 | 8.2:-36361646 | None:intergenic |
| AACGGACGATGAAGCAATAG+CGG | 0.675366 | 8.2:-36360064 | None:intergenic |
| ACGATTCTACCACGAGAGGG+TGG | 0.684824 | 8.2:+36359873 | MS.gene009043:CDS |
| TGAGGATGCTATAAAAGCAG+CGG | 0.695297 | 8.2:+36361566 | MS.gene009043:CDS |
| CAATAAGAAAGATCTTCGGG+AGG | 0.711849 | 8.2:+36359933 | MS.gene009043:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATCAAATTCAATAAAAA+AGG | - | chr8.2:36360171-36360190 | None:intergenic | 10.0% |
| !! | TAATCAAATTCAATAAAAAA+GGG | - | chr8.2:36360170-36360189 | None:intergenic | 10.0% |
| !!! | AATTAAGGATTTTTTTTTTT+AGG | + | chr8.2:36360124-36360143 | MS.gene009043:intron | 10.0% |
| !!! | ATTAAGGATTTTTTTTTTTA+GGG | + | chr8.2:36360125-36360144 | MS.gene009043:intron | 10.0% |
| !! | GCCTAAATTTATTAAAATTT+GGG | + | chr8.2:36361242-36361261 | MS.gene009043:intron | 15.0% |
| !! | TGCCTAAATTTATTAAAATT+TGG | + | chr8.2:36361241-36361260 | MS.gene009043:intron | 15.0% |
| !! | TTATATTTATTCTTCATGAT+CGG | + | chr8.2:36361157-36361176 | MS.gene009043:intron | 15.0% |
| !!! | AAATTTTAATAAATTTAGGC+AGG | - | chr8.2:36361242-36361261 | None:intergenic | 15.0% |
| !!! | AATAGATACATAATTTTTAG+TGG | + | chr8.2:36361265-36361284 | MS.gene009043:intron | 15.0% |
| !!! | TCCCAAATTTTAATAAATTT+AGG | - | chr8.2:36361246-36361265 | None:intergenic | 15.0% |
| !!! | TTGGTTTTAATTTTATGTTT+GGG | + | chr8.2:36360493-36360512 | MS.gene009043:intron | 15.0% |
| !! | ATGTAGAAAGCAAATATATT+TGG | + | chr8.2:36360470-36360489 | MS.gene009043:intron | 20.0% |
| !! | TGAAGTTAAAATTGTAATGT+TGG | - | chr8.2:36360689-36360708 | None:intergenic | 20.0% |
| !!! | AACTTATTTTATTTTAGGAC+AGG | - | chr8.2:36360934-36360953 | None:intergenic | 20.0% |
| !!! | ACTTATTTTATTTTAGGACA+GGG | - | chr8.2:36360933-36360952 | None:intergenic | 20.0% |
| !!! | AGTGCAACTTATTTTATTTT+AGG | - | chr8.2:36360939-36360958 | None:intergenic | 20.0% |
| !!! | ATGATATTTTTTGTTGAAGA+TGG | + | chr8.2:36360425-36360444 | MS.gene009043:intron | 20.0% |
| !!! | CTACTAAATAGTTTTATCTT+TGG | + | chr8.2:36361413-36361432 | MS.gene009043:intron | 20.0% |
| !!! | CTTTTATGAATATTACTACT+TGG | + | chr8.2:36361015-36361034 | MS.gene009043:intron | 20.0% |
| !!! | GTTGGTTTTAATTTTATGTT+TGG | + | chr8.2:36360492-36360511 | MS.gene009043:intron | 20.0% |
| !!! | TGATATTTTTTGTTGAAGAT+GGG | + | chr8.2:36360426-36360445 | MS.gene009043:intron | 20.0% |
| !!! | TGGTTTTAATTTTATGTTTG+GGG | + | chr8.2:36360494-36360513 | MS.gene009043:intron | 20.0% |
| !!! | TTTTAATAAACCATTCTCTA+AGG | + | chr8.2:36360852-36360871 | MS.gene009043:intron | 20.0% |
| ! | AAATTGTAATGTTGGATGAT+AGG | - | chr8.2:36360681-36360700 | None:intergenic | 25.0% |
| ! | AACAAGAAAAAGAAACCAAA+AGG | - | chr8.2:36361336-36361355 | None:intergenic | 25.0% |
| ! | AGAAAGCAAATATATTTGGT+TGG | + | chr8.2:36360474-36360493 | MS.gene009043:intron | 25.0% |
| ! | TCATAAAAGTTAGTATTCAC+TGG | - | chr8.2:36361004-36361023 | None:intergenic | 25.0% |
| ! | TGTCATGAAGTTTCAAATTA+AGG | + | chr8.2:36359987-36360006 | MS.gene009043:CDS | 25.0% |
| ! | TTATCATTCTCTAATAGTTC+AGG | + | chr8.2:36360813-36360832 | MS.gene009043:intron | 25.0% |
| !!! | ACAGCTTATTTTTCTACTTA+TGG | + | chr8.2:36360545-36360564 | MS.gene009043:intron | 25.0% |
| !!! | CAAATTAAGGTTGATGATAA+TGG | + | chr8.2:36360000-36360019 | MS.gene009043:CDS | 25.0% |
| !!! | CTTATTTTATTTTAGGACAG+GGG | - | chr8.2:36360932-36360951 | None:intergenic | 25.0% |
| !!! | TAGGTTGTTTTTTCATGTAT+TGG | + | chr8.2:36360089-36360108 | MS.gene009043:intron | 25.0% |
| !!! | TGGTTTCTTTTTCTTGTTTT+TGG | + | chr8.2:36361338-36361357 | MS.gene009043:intron | 25.0% |
| !!! | TGGTTTGTTATAGGAAATTA+AGG | + | chr8.2:36360109-36360128 | MS.gene009043:intron | 25.0% |
| !!! | TTATTTTATTTTAGGACAGG+GGG | - | chr8.2:36360931-36360950 | None:intergenic | 25.0% |
| !!! | TTCATGTATTGGTTTGTTAT+AGG | + | chr8.2:36360100-36360119 | MS.gene009043:intron | 25.0% |
| !!! | TTCTTTTTCTTGTTTTTGGA+AGG | + | chr8.2:36361342-36361361 | MS.gene009043:intron | 25.0% |
| AATAAGCTGTTTATCCAAAC+AGG | - | chr8.2:36360535-36360554 | None:intergenic | 30.0% | |
| ATAAGCTGTTTATCCAAACA+GGG | - | chr8.2:36360534-36360553 | None:intergenic | 30.0% | |
| ATGAAAAAACAACCTACCAA+CGG | - | chr8.2:36360085-36360104 | None:intergenic | 30.0% | |
| ATTAAGAACACGTAAGTAAC+TGG | + | chr8.2:36360279-36360298 | MS.gene009043:intron | 30.0% | |
| CCTTCAATAAGAAAGATCTT+CGG | + | chr8.2:36359929-36359948 | MS.gene009043:CDS | 30.0% | |
| CTTCAATAAGAAAGATCTTC+GGG | + | chr8.2:36359930-36359949 | MS.gene009043:CDS | 30.0% | |
| TAAGATTAAATCCTGCAGAT+CGG | - | chr8.2:36361393-36361412 | None:intergenic | 30.0% | |
| ! | TTTTCGTGCACTCTTTAATT+TGG | - | chr8.2:36360738-36360757 | None:intergenic | 30.0% |
| !! | AAGCAAATTGTGTTTTTGTC+TGG | + | chr8.2:36360328-36360347 | MS.gene009043:intron | 30.0% |
| !! | TTTTGTTGAAGATGGGTTTT+TGG | + | chr8.2:36360433-36360452 | MS.gene009043:intron | 30.0% |
| !!! | TTTTTCTTGTTTTTGGAAGG+AGG | + | chr8.2:36361345-36361364 | MS.gene009043:intron | 30.0% |
| AACATAGCAGCAAAAGATGA+TGG | - | chr8.2:36361308-36361327 | None:intergenic | 35.0% | |
| AATAGCTCGACCTATAGAAT+AGG | + | chr8.2:36361117-36361136 | MS.gene009043:intron | 35.0% | |
| ATAGCTCGACCTATAGAATA+GGG | + | chr8.2:36361118-36361137 | MS.gene009043:intron | 35.0% | |
| CCGAAGATCTTTCTTATTGA+AGG | - | chr8.2:36359932-36359951 | None:intergenic | 35.0% | |
| GAAGTTTGTGTATTACTACG+TGG | + | chr8.2:36360353-36360372 | MS.gene009043:intron | 35.0% | |
| ! | CATCTTTTGCTGCTATGTTT+TGG | + | chr8.2:36361309-36361328 | MS.gene009043:intron | 35.0% |
| ! | GAGTGTTTTTCCTTAGAGAA+TGG | - | chr8.2:36360865-36360884 | None:intergenic | 35.0% |
| !! | GATTCTTGCTTTAAGACCTT+TGG | + | chr8.2:36360033-36360052 | MS.gene009043:CDS | 35.0% |
| !! | TTTGGTAATGCTTCCATGAT+TGG | + | chr8.2:36361431-36361450 | MS.gene009043:intron | 35.0% |
| AATCGCCAATTCCAGCAATT+AGG | + | chr8.2:36359842-36359861 | MS.gene009043:CDS | 40.0% | |
| AGAACCCTAATTGCTGGAAT+TGG | - | chr8.2:36359850-36359869 | None:intergenic | 40.0% | |
| ATCGCCAATTCCAGCAATTA+GGG | + | chr8.2:36359843-36359862 | MS.gene009043:CDS | 40.0% | |
| CAATAAGAAAGATCTTCGGG+AGG | + | chr8.2:36359933-36359952 | MS.gene009043:CDS | 40.0% | |
| CAGACCAAAACTACCAATCA+TGG | - | chr8.2:36361447-36361466 | None:intergenic | 40.0% | |
| CCATCAAACAATGCTAGCAA+GGG | + | chr8.2:36361066-36361085 | MS.gene009043:intron | 40.0% | |
| GGTTAAGGGAAAGCAAATTG+AGG | + | chr8.2:36360245-36360264 | MS.gene009043:CDS | 40.0% | |
| TAGCTACTAGGAAGAGTTTC+CGG | + | chr8.2:36361089-36361108 | MS.gene009043:intron | 40.0% | |
| TATTGAAGGATCCAACGTTC+CGG | - | chr8.2:36359918-36359937 | None:intergenic | 40.0% | |
| TCCATCAAACAATGCTAGCA+AGG | + | chr8.2:36361065-36361084 | MS.gene009043:intron | 40.0% | |
| TGAGGATGCTATAAAAGCAG+CGG | + | chr8.2:36361566-36361585 | MS.gene009043:CDS | 40.0% | |
| ! | ATCGTTTTGCAGCTACTGAA+TGG | + | chr8.2:36360223-36360242 | MS.gene009043:intron | 40.0% |
| ! | CTGGATTGCGTTATTTCAAC+TGG | - | chr8.2:36360985-36361004 | None:intergenic | 40.0% |
| ! | GTTATTTCAACTGGTCGCTA+TGG | - | chr8.2:36360976-36360995 | None:intergenic | 40.0% |
| ! | TAGGTCGAGCTATTTCATAC+CGG | - | chr8.2:36361111-36361130 | None:intergenic | 40.0% |
| ! | TCGTTTTGCAGCTACTGAAT+GGG | + | chr8.2:36360224-36360243 | MS.gene009043:intron | 40.0% |
| !! | CTGCTATGTTTTGGACCTTT+TGG | + | chr8.2:36361318-36361337 | MS.gene009043:intron | 40.0% |
| !! | GCTTCCATGATTGGTAGTTT+TGG | + | chr8.2:36361440-36361459 | MS.gene009043:intron | 40.0% |
| !! | TGCTTTAAGACCTTTGGATG+TGG | + | chr8.2:36360039-36360058 | MS.gene009043:CDS | 40.0% |
| !!! | AGCTTTGGATTCCTTTTCCT+TGG | - | chr8.2:36361186-36361205 | None:intergenic | 40.0% |
| !!! | TTTATTTTAGGACAGGGGGT+GGG | - | chr8.2:36360927-36360946 | None:intergenic | 40.0% |
| !!! | TTTTATTTTAGGACAGGGGG+TGG | - | chr8.2:36360928-36360947 | None:intergenic | 40.0% |
| AACGGACGATGAAGCAATAG+CGG | - | chr8.2:36360067-36360086 | None:intergenic | 45.0% | |
| AAGAAAGATCTTCGGGAGGT+GGG | + | chr8.2:36359937-36359956 | MS.gene009043:CDS | 45.0% | |
| ATGATCGGCAACCAAGGAAA+AGG | + | chr8.2:36361172-36361191 | MS.gene009043:intron | 45.0% | |
| ATGCTGCAGTGAAGCTTAAC+TGG | - | chr8.2:36361540-36361559 | None:intergenic | 45.0% | |
| ATTGAAGGATCCAACGTTCC+GGG | - | chr8.2:36359917-36359936 | None:intergenic | 45.0% | |
| CACTCCTCTCCCTATTCTAT+AGG | - | chr8.2:36361130-36361149 | None:intergenic | 45.0% | |
| CCCTTGCTAGCATTGTTTGA+TGG | - | chr8.2:36361069-36361088 | None:intergenic | 45.0% | |
| CGCAAAGAAACTCGTCCAAA+CGG | + | chr8.2:36359810-36359829 | MS.gene009043:CDS | 45.0% | |
| CTATAGAATAGGGAGAGGAG+TGG | + | chr8.2:36361128-36361147 | MS.gene009043:intron | 45.0% | |
| CTTCATGACATCACCACAAG+CGG | - | chr8.2:36359977-36359996 | None:intergenic | 45.0% | |
| GACGTGTAGCTAAGTAGCTT+TGG | - | chr8.2:36361201-36361220 | None:intergenic | 45.0% | |
| GCGCGATTCAGAAACCAAAA+GGG | - | chr8.2:36361371-36361390 | None:intergenic | 45.0% | |
| TAAGAAAGATCTTCGGGAGG+TGG | + | chr8.2:36359936-36359955 | MS.gene009043:CDS | 45.0% | |
| TCGACCTATAGAATAGGGAG+AGG | + | chr8.2:36361123-36361142 | MS.gene009043:intron | 45.0% | |
| TGGATCACTACGAAAATCCC+CGG | + | chr8.2:36359896-36359915 | MS.gene009043:CDS | 45.0% | |
| TTATGAAGCTAAGCGTGCCT+CGG | + | chr8.2:36361596-36361615 | MS.gene009043:CDS | 45.0% | |
| TTCATGACATCACCACAAGC+GGG | - | chr8.2:36359976-36359995 | None:intergenic | 45.0% | |
| TTCTTCATGATCGGCAACCA+AGG | + | chr8.2:36361166-36361185 | MS.gene009043:intron | 45.0% | |
| ! | AATAGCGGAACCACATCCAA+AGG | - | chr8.2:36360052-36360071 | None:intergenic | 45.0% |
| !! | GCAGCTACTGAATGGGTTAA+GGG | + | chr8.2:36360231-36360250 | MS.gene009043:intron | 45.0% |
| !! | TGCAGCTACTGAATGGGTTA+AGG | + | chr8.2:36360230-36360249 | MS.gene009043:intron | 45.0% |
| !! | TTTTTGGAAGGAGGCCCTTT+TGG | + | chr8.2:36361354-36361373 | MS.gene009043:intron | 45.0% |
| CGTGGAAGAACCCTAATTGC+TGG | - | chr8.2:36359856-36359875 | None:intergenic | 50.0% | |
| CTGCAGTGAAGCTTAACTGG+CGG | - | chr8.2:36361537-36361556 | None:intergenic | 50.0% | |
| GCTACTTAGCTACACGTCGA+AGG | + | chr8.2:36361203-36361222 | MS.gene009043:intron | 50.0% | |
| GCTATTGCTTCATCGTCCGT+TGG | + | chr8.2:36360066-36360085 | MS.gene009043:CDS | 50.0% | |
| GGCGCGATTCAGAAACCAAA+AGG | - | chr8.2:36361372-36361391 | None:intergenic | 50.0% | |
| TACGAAAATCCCCGGAACGT+TGG | + | chr8.2:36359904-36359923 | MS.gene009043:CDS | 50.0% | |
| TCAACTGGTCGCTATGGTGA+TGG | - | chr8.2:36360970-36360989 | None:intergenic | 50.0% | |
| TCCACGATTCTACCACGAGA+GGG | + | chr8.2:36359870-36359889 | MS.gene009043:CDS | 50.0% | |
| TGCAGTGAAGCTTAACTGGC+GGG | - | chr8.2:36361536-36361555 | None:intergenic | 50.0% | |
| TGCTAGCAAGGGTAGCTACT+AGG | + | chr8.2:36361077-36361096 | MS.gene009043:intron | 50.0% | |
| TTCCACGATTCTACCACGAG+AGG | + | chr8.2:36359869-36359888 | MS.gene009043:CDS | 50.0% | |
| TTGAAGATGCGAGCCCTGTT+TGG | + | chr8.2:36360518-36360537 | MS.gene009043:intron | 50.0% | |
| TTGAAGGATCCAACGTTCCG+GGG | - | chr8.2:36359916-36359935 | None:intergenic | 50.0% | |
| TTGCTTCATCGTCCGTTGGT+AGG | + | chr8.2:36360070-36360089 | MS.gene009043:intron | 50.0% | |
| !! | TGGTCGCTATGGTGATGGTT+AGG | - | chr8.2:36360965-36360984 | None:intergenic | 50.0% |
| ACCCTCTCGTGGTAGAATCG+TGG | - | chr8.2:36359874-36359893 | None:intergenic | 55.0% | |
| ACGATTCTACCACGAGAGGG+TGG | + | chr8.2:36359873-36359892 | MS.gene009043:CDS | 55.0% | |
| AGTGGCAGATTTGTCTCCCG+TGG | - | chr8.2:36361631-36361650 | None:intergenic | 55.0% | |
| ATTCTACCACGAGAGGGTGG+TGG | + | chr8.2:36359876-36359895 | MS.gene009043:CDS | 55.0% | |
| GCGATTCAAACGACGCCGTT+TGG | - | chr8.2:36359828-36359847 | None:intergenic | 55.0% | |
| ! | TCACTGCAGCATGCTTGCTG+AGG | + | chr8.2:36361548-36361567 | MS.gene009043:CDS | 55.0% |
| !!! | ATTTTAGGACAGGGGGTGGG+TGG | - | chr8.2:36360924-36360943 | None:intergenic | 55.0% |
| !!! | TTTTAGGACAGGGGGTGGGT+GGG | - | chr8.2:36360923-36360942 | None:intergenic | 55.0% |
| AGTGATCCACCACCCTCTCG+TGG | - | chr8.2:36359885-36359904 | None:intergenic | 60.0% | |
| CTTCGGGAGGTGGGATCTGT+TGG | + | chr8.2:36359946-36359965 | MS.gene009043:CDS | 60.0% | |
| TAAGCGTGCCTCGGCTACTG+CGG | + | chr8.2:36361605-36361624 | MS.gene009043:CDS | 60.0% | |
| TCTGTTGGTGCACCCGCTTG+TGG | + | chr8.2:36359961-36359980 | MS.gene009043:CDS | 60.0% | |
| ! | TCTGAATCGCGCCGATCTGC+AGG | + | chr8.2:36361379-36361398 | MS.gene009043:intron | 60.0% |
| ACAGGGGGTGGGTGGGTGAG+TGG | - | chr8.2:36360916-36360935 | None:intergenic | 70.0% | |
| GGTGGGTGGGTGAGTGGTGG+TGG | - | chr8.2:36360910-36360929 | None:intergenic | 70.0% | |
| TGCCTCGGCTACTGCGGCCA+CGG | + | chr8.2:36361611-36361630 | MS.gene009043:CDS | 70.0% | |
| GCCTCGGCTACTGCGGCCAC+GGG | + | chr8.2:36361612-36361631 | MS.gene009043:CDS | 75.0% | |
| GGGGGTGGGTGGGTGAGTGG+TGG | - | chr8.2:36360913-36360932 | None:intergenic | 75.0% | |
| TCCCGTGGCCGCAGTAGCCG+AGG | - | chr8.2:36361616-36361635 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 36359799 | 36361656 | 36359799 | ID=MS.gene009043 |
| chr8.2 | mRNA | 36359799 | 36361656 | 36359799 | ID=MS.gene009043.t1;Parent=MS.gene009043 |
| chr8.2 | exon | 36359799 | 36360087 | 36359799 | ID=MS.gene009043.t1.exon1;Parent=MS.gene009043.t1 |
| chr8.2 | CDS | 36359799 | 36360087 | 36359799 | ID=cds.MS.gene009043.t1;Parent=MS.gene009043.t1 |
| chr8.2 | exon | 36360235 | 36360289 | 36360235 | ID=MS.gene009043.t1.exon2;Parent=MS.gene009043.t1 |
| chr8.2 | CDS | 36360235 | 36360289 | 36360235 | ID=cds.MS.gene009043.t1;Parent=MS.gene009043.t1 |
| chr8.2 | exon | 36361509 | 36361656 | 36361509 | ID=MS.gene009043.t1.exon3;Parent=MS.gene009043.t1 |
| chr8.2 | CDS | 36361509 | 36361656 | 36361509 | ID=cds.MS.gene009043.t1;Parent=MS.gene009043.t1 |
| Gene Sequence |
| Protein sequence |