Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene009043.t1 | XP_003601257.1 | 87.2 | 164 | 20 | 1 | 1 | 163 | 1 | 164 | 1.30E-70 | 275.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene009043.t1 | Q8LR34 | 76.8 | 138 | 30 | 2 | 28 | 163 | 34 | 171 | 2.6e-51 | 203.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene009043.t1 | B7FHC6 | 87.2 | 164 | 20 | 1 | 1 | 163 | 1 | 164 | 9.4e-71 | 275.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene009043 | MS.gene29055 | PPI |
MS.gene009043 | MS.gene031845 | PPI |
MS.gene83301 | MS.gene009043 | PPI |
MS.gene009043 | MS.gene059021 | PPI |
MS.gene009043 | MS.gene29363 | PPI |
MS.gene009043 | MS.gene29099 | PPI |
MS.gene022304 | MS.gene009043 | PPI |
MS.gene009043 | MS.gene009053 | PPI |
MS.gene009043 | MS.gene25969 | PPI |
MS.gene038024 | MS.gene009043 | PPI |
MS.gene94805 | MS.gene009043 | PPI |
MS.gene30769 | MS.gene009043 | PPI |
MS.gene009043 | MS.gene29101 | PPI |
MS.gene009043 | MS.gene29054 | PPI |
MS.gene009043 | MS.gene35660 | PPI |
MS.gene009043 | MS.gene61049 | PPI |
MS.gene009043 | MS.gene069794 | PPI |
MS.gene009043 | MS.gene031844 | PPI |
MS.gene25969 | MS.gene009043 | PPI |
MS.gene009043 | MS.gene70632 | PPI |
MS.gene24026 | MS.gene009043 | PPI |
MS.gene009043 | MS.gene038497 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene009043.t1 | MTR_3g077720 | 87.195 | 164 | 20 | 1 | 1 | 163 | 1 | 164 | 4.93e-103 | 292 |
MS.gene009043.t1 | MTR_3g077730 | 80.153 | 131 | 23 | 2 | 32 | 159 | 5 | 135 | 6.88e-69 | 206 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene009043.t1 | AT4G22220 | 69.281 | 153 | 44 | 3 | 5 | 155 | 7 | 158 | 2.90e-69 | 207 |
MS.gene009043.t1 | AT4G04080 | 62.658 | 158 | 56 | 3 | 1 | 156 | 1 | 157 | 1.52e-66 | 200 |
MS.gene009043.t1 | AT3G01020 | 60.976 | 164 | 60 | 2 | 1 | 163 | 3 | 163 | 4.63e-63 | 191 |
Find 49 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAAATTAAGGTTGATGATAA+TGG | 0.228001 | 8.2:+36360000 | MS.gene009043:CDS |
TGTCATGAAGTTTCAAATTA+AGG | 0.237273 | 8.2:+36359987 | MS.gene009043:CDS |
AATCGCCAATTCCAGCAATT+AGG | 0.260997 | 8.2:+36359842 | MS.gene009043:CDS |
CCGAAGATCTTTCTTATTGA+AGG | 0.314287 | 8.2:-36359929 | None:intergenic |
GATTCTTGCTTTAAGACCTT+TGG | 0.331092 | 8.2:+36360033 | MS.gene009043:CDS |
ATCGCCAATTCCAGCAATTA+GGG | 0.344413 | 8.2:+36359843 | MS.gene009043:CDS |
ATGCTGCAGTGAAGCTTAAC+TGG | 0.354352 | 8.2:-36361537 | None:intergenic |
TGCAGCTACTGAATGGGTTA+AGG | 0.358960 | 8.2:+36360230 | MS.gene009043:intron |
GCGATTCAAACGACGCCGTT+TGG | 0.372016 | 8.2:-36359825 | None:intergenic |
AGAACCCTAATTGCTGGAAT+TGG | 0.383969 | 8.2:-36359847 | None:intergenic |
GCAGCTACTGAATGGGTTAA+GGG | 0.384513 | 8.2:+36360231 | MS.gene009043:intron |
CTTCAATAAGAAAGATCTTC+GGG | 0.392132 | 8.2:+36359930 | MS.gene009043:CDS |
CGTGGAAGAACCCTAATTGC+TGG | 0.397022 | 8.2:-36359853 | None:intergenic |
ATTGAAGGATCCAACGTTCC+GGG | 0.412834 | 8.2:-36359914 | None:intergenic |
TATTGAAGGATCCAACGTTC+CGG | 0.415466 | 8.2:-36359915 | None:intergenic |
TGCCTCGGCTACTGCGGCCA+CGG | 0.446467 | 8.2:+36361611 | MS.gene009043:CDS |
CGCAAAGAAACTCGTCCAAA+CGG | 0.447336 | 8.2:+36359810 | MS.gene009043:CDS |
CCTTCAATAAGAAAGATCTT+CGG | 0.452805 | 8.2:+36359929 | MS.gene009043:CDS |
TGCTTTAAGACCTTTGGATG+TGG | 0.461939 | 8.2:+36360039 | MS.gene009043:CDS |
CTTCGGGAGGTGGGATCTGT+TGG | 0.484742 | 8.2:+36359946 | MS.gene009043:CDS |
TAAGAAAGATCTTCGGGAGG+TGG | 0.491830 | 8.2:+36359936 | MS.gene009043:CDS |
GCCTCGGCTACTGCGGCCAC+GGG | 0.517239 | 8.2:+36361612 | MS.gene009043:CDS |
TACGAAAATCCCCGGAACGT+TGG | 0.529176 | 8.2:+36359904 | MS.gene009043:CDS |
TGCAGTGAAGCTTAACTGGC+GGG | 0.542392 | 8.2:-36361533 | None:intergenic |
TCCCGTGGCCGCAGTAGCCG+AGG | 0.550070 | 8.2:-36361613 | None:intergenic |
AAGAAAGATCTTCGGGAGGT+GGG | 0.571174 | 8.2:+36359937 | MS.gene009043:CDS |
GCTATTGCTTCATCGTCCGT+TGG | 0.572466 | 8.2:+36360066 | MS.gene009043:CDS |
TTATGAAGCTAAGCGTGCCT+CGG | 0.575006 | 8.2:+36361596 | MS.gene009043:CDS |
CTTCATGACATCACCACAAG+CGG | 0.586806 | 8.2:-36359974 | None:intergenic |
ATTCTACCACGAGAGGGTGG+TGG | 0.593190 | 8.2:+36359876 | MS.gene009043:CDS |
TTGAAGGATCCAACGTTCCG+GGG | 0.597622 | 8.2:-36359913 | None:intergenic |
TAAGCGTGCCTCGGCTACTG+CGG | 0.598393 | 8.2:+36361605 | MS.gene009043:CDS |
TTCATGACATCACCACAAGC+GGG | 0.599308 | 8.2:-36359973 | None:intergenic |
TCACTGCAGCATGCTTGCTG+AGG | 0.608636 | 8.2:+36361548 | MS.gene009043:CDS |
GGTTAAGGGAAAGCAAATTG+AGG | 0.612867 | 8.2:+36360245 | MS.gene009043:CDS |
TCTGTTGGTGCACCCGCTTG+TGG | 0.618008 | 8.2:+36359961 | MS.gene009043:CDS |
TGGATCACTACGAAAATCCC+CGG | 0.623098 | 8.2:+36359896 | MS.gene009043:CDS |
TCCACGATTCTACCACGAGA+GGG | 0.625238 | 8.2:+36359870 | MS.gene009043:CDS |
AGTGGCAGATTTGTCTCCCG+TGG | 0.628353 | 8.2:-36361628 | None:intergenic |
CTGCAGTGAAGCTTAACTGG+CGG | 0.631259 | 8.2:-36361534 | None:intergenic |
ACCCTCTCGTGGTAGAATCG+TGG | 0.631852 | 8.2:-36359871 | None:intergenic |
AATAGCGGAACCACATCCAA+AGG | 0.639771 | 8.2:-36360049 | None:intergenic |
AGTGATCCACCACCCTCTCG+TGG | 0.652272 | 8.2:-36359882 | None:intergenic |
TTCCACGATTCTACCACGAG+AGG | 0.656410 | 8.2:+36359869 | MS.gene009043:CDS |
CAATGGGAGAAATCATGCAG+TGG | 0.672265 | 8.2:-36361646 | None:intergenic |
AACGGACGATGAAGCAATAG+CGG | 0.675366 | 8.2:-36360064 | None:intergenic |
ACGATTCTACCACGAGAGGG+TGG | 0.684824 | 8.2:+36359873 | MS.gene009043:CDS |
TGAGGATGCTATAAAAGCAG+CGG | 0.695297 | 8.2:+36361566 | MS.gene009043:CDS |
CAATAAGAAAGATCTTCGGG+AGG | 0.711849 | 8.2:+36359933 | MS.gene009043:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAATCAAATTCAATAAAAA+AGG | - | chr8.2:36360171-36360190 | None:intergenic | 10.0% |
!! | TAATCAAATTCAATAAAAAA+GGG | - | chr8.2:36360170-36360189 | None:intergenic | 10.0% |
!!! | AATTAAGGATTTTTTTTTTT+AGG | + | chr8.2:36360124-36360143 | MS.gene009043:intron | 10.0% |
!!! | ATTAAGGATTTTTTTTTTTA+GGG | + | chr8.2:36360125-36360144 | MS.gene009043:intron | 10.0% |
!! | GCCTAAATTTATTAAAATTT+GGG | + | chr8.2:36361242-36361261 | MS.gene009043:intron | 15.0% |
!! | TGCCTAAATTTATTAAAATT+TGG | + | chr8.2:36361241-36361260 | MS.gene009043:intron | 15.0% |
!! | TTATATTTATTCTTCATGAT+CGG | + | chr8.2:36361157-36361176 | MS.gene009043:intron | 15.0% |
!!! | AAATTTTAATAAATTTAGGC+AGG | - | chr8.2:36361242-36361261 | None:intergenic | 15.0% |
!!! | AATAGATACATAATTTTTAG+TGG | + | chr8.2:36361265-36361284 | MS.gene009043:intron | 15.0% |
!!! | TCCCAAATTTTAATAAATTT+AGG | - | chr8.2:36361246-36361265 | None:intergenic | 15.0% |
!!! | TTGGTTTTAATTTTATGTTT+GGG | + | chr8.2:36360493-36360512 | MS.gene009043:intron | 15.0% |
!! | ATGTAGAAAGCAAATATATT+TGG | + | chr8.2:36360470-36360489 | MS.gene009043:intron | 20.0% |
!! | TGAAGTTAAAATTGTAATGT+TGG | - | chr8.2:36360689-36360708 | None:intergenic | 20.0% |
!!! | AACTTATTTTATTTTAGGAC+AGG | - | chr8.2:36360934-36360953 | None:intergenic | 20.0% |
!!! | ACTTATTTTATTTTAGGACA+GGG | - | chr8.2:36360933-36360952 | None:intergenic | 20.0% |
!!! | AGTGCAACTTATTTTATTTT+AGG | - | chr8.2:36360939-36360958 | None:intergenic | 20.0% |
!!! | ATGATATTTTTTGTTGAAGA+TGG | + | chr8.2:36360425-36360444 | MS.gene009043:intron | 20.0% |
!!! | CTACTAAATAGTTTTATCTT+TGG | + | chr8.2:36361413-36361432 | MS.gene009043:intron | 20.0% |
!!! | CTTTTATGAATATTACTACT+TGG | + | chr8.2:36361015-36361034 | MS.gene009043:intron | 20.0% |
!!! | GTTGGTTTTAATTTTATGTT+TGG | + | chr8.2:36360492-36360511 | MS.gene009043:intron | 20.0% |
!!! | TGATATTTTTTGTTGAAGAT+GGG | + | chr8.2:36360426-36360445 | MS.gene009043:intron | 20.0% |
!!! | TGGTTTTAATTTTATGTTTG+GGG | + | chr8.2:36360494-36360513 | MS.gene009043:intron | 20.0% |
!!! | TTTTAATAAACCATTCTCTA+AGG | + | chr8.2:36360852-36360871 | MS.gene009043:intron | 20.0% |
! | AAATTGTAATGTTGGATGAT+AGG | - | chr8.2:36360681-36360700 | None:intergenic | 25.0% |
! | AACAAGAAAAAGAAACCAAA+AGG | - | chr8.2:36361336-36361355 | None:intergenic | 25.0% |
! | AGAAAGCAAATATATTTGGT+TGG | + | chr8.2:36360474-36360493 | MS.gene009043:intron | 25.0% |
! | TCATAAAAGTTAGTATTCAC+TGG | - | chr8.2:36361004-36361023 | None:intergenic | 25.0% |
! | TGTCATGAAGTTTCAAATTA+AGG | + | chr8.2:36359987-36360006 | MS.gene009043:CDS | 25.0% |
! | TTATCATTCTCTAATAGTTC+AGG | + | chr8.2:36360813-36360832 | MS.gene009043:intron | 25.0% |
!!! | ACAGCTTATTTTTCTACTTA+TGG | + | chr8.2:36360545-36360564 | MS.gene009043:intron | 25.0% |
!!! | CAAATTAAGGTTGATGATAA+TGG | + | chr8.2:36360000-36360019 | MS.gene009043:CDS | 25.0% |
!!! | CTTATTTTATTTTAGGACAG+GGG | - | chr8.2:36360932-36360951 | None:intergenic | 25.0% |
!!! | TAGGTTGTTTTTTCATGTAT+TGG | + | chr8.2:36360089-36360108 | MS.gene009043:intron | 25.0% |
!!! | TGGTTTCTTTTTCTTGTTTT+TGG | + | chr8.2:36361338-36361357 | MS.gene009043:intron | 25.0% |
!!! | TGGTTTGTTATAGGAAATTA+AGG | + | chr8.2:36360109-36360128 | MS.gene009043:intron | 25.0% |
!!! | TTATTTTATTTTAGGACAGG+GGG | - | chr8.2:36360931-36360950 | None:intergenic | 25.0% |
!!! | TTCATGTATTGGTTTGTTAT+AGG | + | chr8.2:36360100-36360119 | MS.gene009043:intron | 25.0% |
!!! | TTCTTTTTCTTGTTTTTGGA+AGG | + | chr8.2:36361342-36361361 | MS.gene009043:intron | 25.0% |
AATAAGCTGTTTATCCAAAC+AGG | - | chr8.2:36360535-36360554 | None:intergenic | 30.0% | |
ATAAGCTGTTTATCCAAACA+GGG | - | chr8.2:36360534-36360553 | None:intergenic | 30.0% | |
ATGAAAAAACAACCTACCAA+CGG | - | chr8.2:36360085-36360104 | None:intergenic | 30.0% | |
ATTAAGAACACGTAAGTAAC+TGG | + | chr8.2:36360279-36360298 | MS.gene009043:intron | 30.0% | |
CCTTCAATAAGAAAGATCTT+CGG | + | chr8.2:36359929-36359948 | MS.gene009043:CDS | 30.0% | |
CTTCAATAAGAAAGATCTTC+GGG | + | chr8.2:36359930-36359949 | MS.gene009043:CDS | 30.0% | |
TAAGATTAAATCCTGCAGAT+CGG | - | chr8.2:36361393-36361412 | None:intergenic | 30.0% | |
! | TTTTCGTGCACTCTTTAATT+TGG | - | chr8.2:36360738-36360757 | None:intergenic | 30.0% |
!! | AAGCAAATTGTGTTTTTGTC+TGG | + | chr8.2:36360328-36360347 | MS.gene009043:intron | 30.0% |
!! | TTTTGTTGAAGATGGGTTTT+TGG | + | chr8.2:36360433-36360452 | MS.gene009043:intron | 30.0% |
!!! | TTTTTCTTGTTTTTGGAAGG+AGG | + | chr8.2:36361345-36361364 | MS.gene009043:intron | 30.0% |
AACATAGCAGCAAAAGATGA+TGG | - | chr8.2:36361308-36361327 | None:intergenic | 35.0% | |
AATAGCTCGACCTATAGAAT+AGG | + | chr8.2:36361117-36361136 | MS.gene009043:intron | 35.0% | |
ATAGCTCGACCTATAGAATA+GGG | + | chr8.2:36361118-36361137 | MS.gene009043:intron | 35.0% | |
CCGAAGATCTTTCTTATTGA+AGG | - | chr8.2:36359932-36359951 | None:intergenic | 35.0% | |
GAAGTTTGTGTATTACTACG+TGG | + | chr8.2:36360353-36360372 | MS.gene009043:intron | 35.0% | |
! | CATCTTTTGCTGCTATGTTT+TGG | + | chr8.2:36361309-36361328 | MS.gene009043:intron | 35.0% |
! | GAGTGTTTTTCCTTAGAGAA+TGG | - | chr8.2:36360865-36360884 | None:intergenic | 35.0% |
!! | GATTCTTGCTTTAAGACCTT+TGG | + | chr8.2:36360033-36360052 | MS.gene009043:CDS | 35.0% |
!! | TTTGGTAATGCTTCCATGAT+TGG | + | chr8.2:36361431-36361450 | MS.gene009043:intron | 35.0% |
AATCGCCAATTCCAGCAATT+AGG | + | chr8.2:36359842-36359861 | MS.gene009043:CDS | 40.0% | |
AGAACCCTAATTGCTGGAAT+TGG | - | chr8.2:36359850-36359869 | None:intergenic | 40.0% | |
ATCGCCAATTCCAGCAATTA+GGG | + | chr8.2:36359843-36359862 | MS.gene009043:CDS | 40.0% | |
CAATAAGAAAGATCTTCGGG+AGG | + | chr8.2:36359933-36359952 | MS.gene009043:CDS | 40.0% | |
CAGACCAAAACTACCAATCA+TGG | - | chr8.2:36361447-36361466 | None:intergenic | 40.0% | |
CCATCAAACAATGCTAGCAA+GGG | + | chr8.2:36361066-36361085 | MS.gene009043:intron | 40.0% | |
GGTTAAGGGAAAGCAAATTG+AGG | + | chr8.2:36360245-36360264 | MS.gene009043:CDS | 40.0% | |
TAGCTACTAGGAAGAGTTTC+CGG | + | chr8.2:36361089-36361108 | MS.gene009043:intron | 40.0% | |
TATTGAAGGATCCAACGTTC+CGG | - | chr8.2:36359918-36359937 | None:intergenic | 40.0% | |
TCCATCAAACAATGCTAGCA+AGG | + | chr8.2:36361065-36361084 | MS.gene009043:intron | 40.0% | |
TGAGGATGCTATAAAAGCAG+CGG | + | chr8.2:36361566-36361585 | MS.gene009043:CDS | 40.0% | |
! | ATCGTTTTGCAGCTACTGAA+TGG | + | chr8.2:36360223-36360242 | MS.gene009043:intron | 40.0% |
! | CTGGATTGCGTTATTTCAAC+TGG | - | chr8.2:36360985-36361004 | None:intergenic | 40.0% |
! | GTTATTTCAACTGGTCGCTA+TGG | - | chr8.2:36360976-36360995 | None:intergenic | 40.0% |
! | TAGGTCGAGCTATTTCATAC+CGG | - | chr8.2:36361111-36361130 | None:intergenic | 40.0% |
! | TCGTTTTGCAGCTACTGAAT+GGG | + | chr8.2:36360224-36360243 | MS.gene009043:intron | 40.0% |
!! | CTGCTATGTTTTGGACCTTT+TGG | + | chr8.2:36361318-36361337 | MS.gene009043:intron | 40.0% |
!! | GCTTCCATGATTGGTAGTTT+TGG | + | chr8.2:36361440-36361459 | MS.gene009043:intron | 40.0% |
!! | TGCTTTAAGACCTTTGGATG+TGG | + | chr8.2:36360039-36360058 | MS.gene009043:CDS | 40.0% |
!!! | AGCTTTGGATTCCTTTTCCT+TGG | - | chr8.2:36361186-36361205 | None:intergenic | 40.0% |
!!! | TTTATTTTAGGACAGGGGGT+GGG | - | chr8.2:36360927-36360946 | None:intergenic | 40.0% |
!!! | TTTTATTTTAGGACAGGGGG+TGG | - | chr8.2:36360928-36360947 | None:intergenic | 40.0% |
AACGGACGATGAAGCAATAG+CGG | - | chr8.2:36360067-36360086 | None:intergenic | 45.0% | |
AAGAAAGATCTTCGGGAGGT+GGG | + | chr8.2:36359937-36359956 | MS.gene009043:CDS | 45.0% | |
ATGATCGGCAACCAAGGAAA+AGG | + | chr8.2:36361172-36361191 | MS.gene009043:intron | 45.0% | |
ATGCTGCAGTGAAGCTTAAC+TGG | - | chr8.2:36361540-36361559 | None:intergenic | 45.0% | |
ATTGAAGGATCCAACGTTCC+GGG | - | chr8.2:36359917-36359936 | None:intergenic | 45.0% | |
CACTCCTCTCCCTATTCTAT+AGG | - | chr8.2:36361130-36361149 | None:intergenic | 45.0% | |
CCCTTGCTAGCATTGTTTGA+TGG | - | chr8.2:36361069-36361088 | None:intergenic | 45.0% | |
CGCAAAGAAACTCGTCCAAA+CGG | + | chr8.2:36359810-36359829 | MS.gene009043:CDS | 45.0% | |
CTATAGAATAGGGAGAGGAG+TGG | + | chr8.2:36361128-36361147 | MS.gene009043:intron | 45.0% | |
CTTCATGACATCACCACAAG+CGG | - | chr8.2:36359977-36359996 | None:intergenic | 45.0% | |
GACGTGTAGCTAAGTAGCTT+TGG | - | chr8.2:36361201-36361220 | None:intergenic | 45.0% | |
GCGCGATTCAGAAACCAAAA+GGG | - | chr8.2:36361371-36361390 | None:intergenic | 45.0% | |
TAAGAAAGATCTTCGGGAGG+TGG | + | chr8.2:36359936-36359955 | MS.gene009043:CDS | 45.0% | |
TCGACCTATAGAATAGGGAG+AGG | + | chr8.2:36361123-36361142 | MS.gene009043:intron | 45.0% | |
TGGATCACTACGAAAATCCC+CGG | + | chr8.2:36359896-36359915 | MS.gene009043:CDS | 45.0% | |
TTATGAAGCTAAGCGTGCCT+CGG | + | chr8.2:36361596-36361615 | MS.gene009043:CDS | 45.0% | |
TTCATGACATCACCACAAGC+GGG | - | chr8.2:36359976-36359995 | None:intergenic | 45.0% | |
TTCTTCATGATCGGCAACCA+AGG | + | chr8.2:36361166-36361185 | MS.gene009043:intron | 45.0% | |
! | AATAGCGGAACCACATCCAA+AGG | - | chr8.2:36360052-36360071 | None:intergenic | 45.0% |
!! | GCAGCTACTGAATGGGTTAA+GGG | + | chr8.2:36360231-36360250 | MS.gene009043:intron | 45.0% |
!! | TGCAGCTACTGAATGGGTTA+AGG | + | chr8.2:36360230-36360249 | MS.gene009043:intron | 45.0% |
!! | TTTTTGGAAGGAGGCCCTTT+TGG | + | chr8.2:36361354-36361373 | MS.gene009043:intron | 45.0% |
CGTGGAAGAACCCTAATTGC+TGG | - | chr8.2:36359856-36359875 | None:intergenic | 50.0% | |
CTGCAGTGAAGCTTAACTGG+CGG | - | chr8.2:36361537-36361556 | None:intergenic | 50.0% | |
GCTACTTAGCTACACGTCGA+AGG | + | chr8.2:36361203-36361222 | MS.gene009043:intron | 50.0% | |
GCTATTGCTTCATCGTCCGT+TGG | + | chr8.2:36360066-36360085 | MS.gene009043:CDS | 50.0% | |
GGCGCGATTCAGAAACCAAA+AGG | - | chr8.2:36361372-36361391 | None:intergenic | 50.0% | |
TACGAAAATCCCCGGAACGT+TGG | + | chr8.2:36359904-36359923 | MS.gene009043:CDS | 50.0% | |
TCAACTGGTCGCTATGGTGA+TGG | - | chr8.2:36360970-36360989 | None:intergenic | 50.0% | |
TCCACGATTCTACCACGAGA+GGG | + | chr8.2:36359870-36359889 | MS.gene009043:CDS | 50.0% | |
TGCAGTGAAGCTTAACTGGC+GGG | - | chr8.2:36361536-36361555 | None:intergenic | 50.0% | |
TGCTAGCAAGGGTAGCTACT+AGG | + | chr8.2:36361077-36361096 | MS.gene009043:intron | 50.0% | |
TTCCACGATTCTACCACGAG+AGG | + | chr8.2:36359869-36359888 | MS.gene009043:CDS | 50.0% | |
TTGAAGATGCGAGCCCTGTT+TGG | + | chr8.2:36360518-36360537 | MS.gene009043:intron | 50.0% | |
TTGAAGGATCCAACGTTCCG+GGG | - | chr8.2:36359916-36359935 | None:intergenic | 50.0% | |
TTGCTTCATCGTCCGTTGGT+AGG | + | chr8.2:36360070-36360089 | MS.gene009043:intron | 50.0% | |
!! | TGGTCGCTATGGTGATGGTT+AGG | - | chr8.2:36360965-36360984 | None:intergenic | 50.0% |
ACCCTCTCGTGGTAGAATCG+TGG | - | chr8.2:36359874-36359893 | None:intergenic | 55.0% | |
ACGATTCTACCACGAGAGGG+TGG | + | chr8.2:36359873-36359892 | MS.gene009043:CDS | 55.0% | |
AGTGGCAGATTTGTCTCCCG+TGG | - | chr8.2:36361631-36361650 | None:intergenic | 55.0% | |
ATTCTACCACGAGAGGGTGG+TGG | + | chr8.2:36359876-36359895 | MS.gene009043:CDS | 55.0% | |
GCGATTCAAACGACGCCGTT+TGG | - | chr8.2:36359828-36359847 | None:intergenic | 55.0% | |
! | TCACTGCAGCATGCTTGCTG+AGG | + | chr8.2:36361548-36361567 | MS.gene009043:CDS | 55.0% |
!!! | ATTTTAGGACAGGGGGTGGG+TGG | - | chr8.2:36360924-36360943 | None:intergenic | 55.0% |
!!! | TTTTAGGACAGGGGGTGGGT+GGG | - | chr8.2:36360923-36360942 | None:intergenic | 55.0% |
AGTGATCCACCACCCTCTCG+TGG | - | chr8.2:36359885-36359904 | None:intergenic | 60.0% | |
CTTCGGGAGGTGGGATCTGT+TGG | + | chr8.2:36359946-36359965 | MS.gene009043:CDS | 60.0% | |
TAAGCGTGCCTCGGCTACTG+CGG | + | chr8.2:36361605-36361624 | MS.gene009043:CDS | 60.0% | |
TCTGTTGGTGCACCCGCTTG+TGG | + | chr8.2:36359961-36359980 | MS.gene009043:CDS | 60.0% | |
! | TCTGAATCGCGCCGATCTGC+AGG | + | chr8.2:36361379-36361398 | MS.gene009043:intron | 60.0% |
ACAGGGGGTGGGTGGGTGAG+TGG | - | chr8.2:36360916-36360935 | None:intergenic | 70.0% | |
GGTGGGTGGGTGAGTGGTGG+TGG | - | chr8.2:36360910-36360929 | None:intergenic | 70.0% | |
TGCCTCGGCTACTGCGGCCA+CGG | + | chr8.2:36361611-36361630 | MS.gene009043:CDS | 70.0% | |
GCCTCGGCTACTGCGGCCAC+GGG | + | chr8.2:36361612-36361631 | MS.gene009043:CDS | 75.0% | |
GGGGGTGGGTGGGTGAGTGG+TGG | - | chr8.2:36360913-36360932 | None:intergenic | 75.0% | |
TCCCGTGGCCGCAGTAGCCG+AGG | - | chr8.2:36361616-36361635 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.2 | gene | 36359799 | 36361656 | 36359799 | ID=MS.gene009043 |
chr8.2 | mRNA | 36359799 | 36361656 | 36359799 | ID=MS.gene009043.t1;Parent=MS.gene009043 |
chr8.2 | exon | 36359799 | 36360087 | 36359799 | ID=MS.gene009043.t1.exon1;Parent=MS.gene009043.t1 |
chr8.2 | CDS | 36359799 | 36360087 | 36359799 | ID=cds.MS.gene009043.t1;Parent=MS.gene009043.t1 |
chr8.2 | exon | 36360235 | 36360289 | 36360235 | ID=MS.gene009043.t1.exon2;Parent=MS.gene009043.t1 |
chr8.2 | CDS | 36360235 | 36360289 | 36360235 | ID=cds.MS.gene009043.t1;Parent=MS.gene009043.t1 |
chr8.2 | exon | 36361509 | 36361656 | 36361509 | ID=MS.gene009043.t1.exon3;Parent=MS.gene009043.t1 |
chr8.2 | CDS | 36361509 | 36361656 | 36361509 | ID=cds.MS.gene009043.t1;Parent=MS.gene009043.t1 |
Gene Sequence |
Protein sequence |