Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031845.t1 | XP_003601103.1 | 98.5 | 275 | 4 | 0 | 1 | 275 | 1 | 275 | 1.30E-150 | 542.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031845.t1 | Q9LIG6 | 84.6 | 208 | 32 | 0 | 66 | 273 | 72 | 279 | 5.6e-99 | 362.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031845.t1 | G7J3M0 | 98.5 | 275 | 4 | 0 | 1 | 275 | 1 | 275 | 9.1e-151 | 542.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene009043 | MS.gene031845 | PPI |
| MS.gene031845 | MS.gene70632 | PPI |
| MS.gene031845 | MS.gene038497 | PPI |
| MS.gene031845 | MS.gene29363 | PPI |
| MS.gene022304 | MS.gene031845 | PPI |
| MS.gene25969 | MS.gene031845 | PPI |
| MS.gene031845 | MS.gene009053 | PPI |
| MS.gene031845 | MS.gene61049 | PPI |
| MS.gene031845 | MS.gene069794 | PPI |
| MS.gene83301 | MS.gene031845 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031845.t1 | MTR_3g073070 | 98.545 | 275 | 4 | 0 | 1 | 275 | 1 | 275 | 0.0 | 562 |
| MS.gene031845.t1 | MTR_3g073070 | 95.785 | 261 | 11 | 0 | 1 | 261 | 1 | 261 | 0.0 | 521 |
| MS.gene031845.t1 | MTR_1g069215 | 93.141 | 277 | 17 | 1 | 1 | 275 | 1 | 277 | 3.20e-159 | 444 |
| MS.gene031845.t1 | MTR_2g005900 | 41.053 | 95 | 50 | 3 | 173 | 264 | 58 | 149 | 4.67e-12 | 64.3 |
| MS.gene031845.t1 | MTR_2g036690 | 47.761 | 67 | 33 | 1 | 198 | 264 | 103 | 167 | 5.59e-12 | 63.9 |
| MS.gene031845.t1 | MTR_2g036690 | 47.761 | 67 | 33 | 1 | 198 | 264 | 103 | 167 | 1.08e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031845.t1 | AT3G20970 | 84.615 | 208 | 32 | 0 | 66 | 273 | 72 | 279 | 1.17e-132 | 377 |
| MS.gene031845.t1 | AT1G51390 | 81.429 | 210 | 38 | 1 | 57 | 266 | 59 | 267 | 1.29e-126 | 361 |
| MS.gene031845.t1 | AT3G20970 | 84.768 | 151 | 23 | 0 | 66 | 216 | 72 | 222 | 2.30e-93 | 275 |
| MS.gene031845.t1 | AT5G49940 | 46.269 | 67 | 34 | 1 | 198 | 264 | 97 | 161 | 1.30e-12 | 65.5 |
| MS.gene031845.t1 | AT4G25910 | 47.761 | 67 | 33 | 1 | 198 | 264 | 96 | 160 | 2.03e-12 | 65.9 |
| MS.gene031845.t1 | AT5G49940 | 46.269 | 67 | 34 | 1 | 198 | 264 | 97 | 161 | 3.09e-12 | 65.1 |
Find 71 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAATGATCAAGGAACTTT+TGG | 0.209765 | 3.4:+71923614 | MS.gene031845:CDS |
| TGAAATCTTTGCCGCTATTA+TGG | 0.218248 | 3.4:+71922533 | MS.gene031845:CDS |
| CTCCTTTGTCCGGTGGAAAA+TGG | 0.263576 | 3.4:-71922170 | None:intergenic |
| TACAAATTGTTCTCGTTGCC+TGG | 0.300775 | 3.4:+71922076 | MS.gene031845:CDS |
| CCACGATGCATCTTCCGATT+TGG | 0.310465 | 3.4:-71922496 | None:intergenic |
| TTCATAGCGGAACGAGGGTT+CGG | 0.314773 | 3.4:-71922287 | None:intergenic |
| ATAATAGCGGCAAAGATTTC+AGG | 0.329502 | 3.4:-71922531 | None:intergenic |
| ATCATGAATTGCTGTGTCTT+TGG | 0.335385 | 3.4:-71922607 | None:intergenic |
| ATTATGGATTTCTACTCTTC+CGG | 0.349184 | 3.4:+71922549 | MS.gene031845:CDS |
| GTCGTAATCGTCTTCCTAAT+CGG | 0.363079 | 3.4:-71922004 | None:intergenic |
| AACATAAGAGACTCTGGATT+TGG | 0.370612 | 3.4:-71922221 | None:intergenic |
| GATTTGGAGTGGACTGTGTT+TGG | 0.376256 | 3.4:-71922205 | None:intergenic |
| TCATAGCGGAACGAGGGTTC+GGG | 0.382077 | 3.4:-71922286 | None:intergenic |
| GGAACGAGGGTTCGGGAAAT+CGG | 0.395541 | 3.4:-71922279 | None:intergenic |
| GTGATTAGTCTCTGGTTTGA+GGG | 0.396383 | 3.4:-71922042 | None:intergenic |
| CAAAGGTGTGGAACAAGAAT+TGG | 0.398435 | 3.4:+71924566 | MS.gene031845:CDS |
| TGAGGCGGAGGAAGAGAAAA+AGG | 0.403424 | 3.4:-71922135 | None:intergenic |
| TGTGATTAGTCTCTGGTTTG+AGG | 0.424340 | 3.4:-71922043 | None:intergenic |
| TTCAGAGTCACCGAAGAACT+TGG | 0.442159 | 3.4:-71924049 | None:intergenic |
| GTGAATAATGTCGGTGGTGA+GGG | 0.452534 | 3.4:+71921971 | None:intergenic |
| AGATTATTGTGATTAGTCTC+TGG | 0.463457 | 3.4:-71922050 | None:intergenic |
| TAGTGGCTGCCCAAGTTCTT+CGG | 0.469327 | 3.4:+71924039 | MS.gene031845:CDS |
| GTCTAGAAAGAGTGGTTCAC+CGG | 0.487455 | 3.4:-71922568 | None:intergenic |
| TCTTCGGTGACTCTGAAGTC+AGG | 0.490374 | 3.4:+71924055 | MS.gene031845:CDS |
| GAAACGACGGTGTTGTGCCC+AGG | 0.492397 | 3.4:-71922094 | None:intergenic |
| GGTGGGGACATTGTATATTG+TGG | 0.499614 | 3.4:+71923669 | MS.gene031845:CDS |
| AGAAGGAAATGGTGAGGCGG+AGG | 0.506688 | 3.4:-71922147 | None:intergenic |
| AGAATTGGATGGCGAGGAAG+AGG | 0.507801 | 3.4:+71924581 | MS.gene031845:CDS |
| TGAAACAGTTGCAATGATCA+AGG | 0.511525 | 3.4:+71923605 | MS.gene031845:CDS |
| GTGGAAAATGGAGAAGGAAA+TGG | 0.515300 | 3.4:-71922158 | None:intergenic |
| AAACATAGTCCTCCTTTGTC+CGG | 0.524701 | 3.4:-71922180 | None:intergenic |
| GAAGAGGAAGCAGCTTTAAG+TGG | 0.530262 | 3.4:+71924597 | MS.gene031845:CDS |
| GTGAAAATTGATTTAGCGAG+AGG | 0.538554 | 3.4:-71922314 | None:intergenic |
| GGATGAAACATAAGAGACTC+TGG | 0.539372 | 3.4:-71922227 | None:intergenic |
| ACAAATTGTTCTCGTTGCCT+GGG | 0.539498 | 3.4:+71922077 | MS.gene031845:CDS |
| ACATCCATGACAGGTTTACC+AGG | 0.541119 | 3.4:-71922248 | None:intergenic |
| CGACCAACTGTACAAGATGA+TGG | 0.541545 | 3.4:+71923648 | MS.gene031845:CDS |
| AATTGCTGTGTCTTTGGAAG+CGG | 0.555636 | 3.4:-71922601 | None:intergenic |
| CGTGAATAATGTCGGTGGTG+AGG | 0.563248 | 3.4:+71921970 | None:intergenic |
| ATCGTCAAACTTAAAATGCA+AGG | 0.563819 | 3.4:+71924010 | MS.gene031845:CDS |
| CAACTGTACAAGATGATGGT+GGG | 0.564735 | 3.4:+71923652 | MS.gene031845:CDS |
| TTGCTGCATTTACAGGTCAA+AGG | 0.565990 | 3.4:+71924549 | MS.gene031845:intron |
| CCACCATCATCTTGTACAGT+TGG | 0.572483 | 3.4:-71923651 | None:intergenic |
| GAGTCTCTTATGTTTCATCC+TGG | 0.574002 | 3.4:+71922230 | MS.gene031845:CDS |
| GGTAAACCTGTCATGGATGT+TGG | 0.587174 | 3.4:+71922251 | MS.gene031845:CDS |
| TCATCCTGGTAAACCTGTCA+TGG | 0.592000 | 3.4:+71922244 | MS.gene031845:CDS |
| CAAATCGGAAGATGCATCGT+GGG | 0.592355 | 3.4:+71922497 | MS.gene031845:CDS |
| GCTTGAGAGTCTAGAAAGAG+TGG | 0.594156 | 3.4:-71922576 | None:intergenic |
| AACTGTACAAGATGATGGTG+GGG | 0.603309 | 3.4:+71923653 | MS.gene031845:CDS |
| GCGCTACCAACATCCATGAC+AGG | 0.609183 | 3.4:-71922257 | None:intergenic |
| TCAGAGTCACCGAAGAACTT+GGG | 0.610880 | 3.4:-71924048 | None:intergenic |
| TGAATAATGTCGGTGGTGAG+GGG | 0.610912 | 3.4:+71921972 | None:intergenic |
| TGTCCGGTGGAAAATGGAGA+AGG | 0.612110 | 3.4:-71922164 | None:intergenic |
| CATAGTCCTCCTTTGTCCGG+TGG | 0.613263 | 3.4:-71922177 | None:intergenic |
| AAAATGCAAGGAGCGTGTAG+TGG | 0.619177 | 3.4:+71924022 | MS.gene031845:CDS |
| CCAACTGTACAAGATGATGG+TGG | 0.622834 | 3.4:+71923651 | MS.gene031845:CDS |
| GCATTTACAGGTCAAAGGTG+TGG | 0.632082 | 3.4:+71924554 | MS.gene031845:intron |
| TGGAGAAGGAAATGGTGAGG+CGG | 0.634856 | 3.4:-71922150 | None:intergenic |
| AAGAGACTCTGGATTTGGAG+TGG | 0.639473 | 3.4:-71922216 | None:intergenic |
| GGAGAATTCATAGCGGAACG+AGG | 0.644818 | 3.4:-71922293 | None:intergenic |
| GGAACAAGAATTGGATGGCG+AGG | 0.646815 | 3.4:+71924575 | MS.gene031845:CDS |
| GAGAATTCATAGCGGAACGA+GGG | 0.651131 | 3.4:-71922292 | None:intergenic |
| CCAAATCGGAAGATGCATCG+TGG | 0.660421 | 3.4:+71922496 | MS.gene031845:CDS |
| TTAGGAAGACGATTACGACT+AGG | 0.667897 | 3.4:+71922008 | MS.gene031845:CDS |
| AGAGTAGAAATCCATAATAG+CGG | 0.670498 | 3.4:-71922544 | None:intergenic |
| AAATGGAGAAGGAAATGGTG+AGG | 0.682646 | 3.4:-71922153 | None:intergenic |
| CAGATCGTGAATAATGTCGG+TGG | 0.693370 | 3.4:+71921965 | None:intergenic |
| GGTGTGGAACAAGAATTGGA+TGG | 0.704531 | 3.4:+71924570 | MS.gene031845:CDS |
| GCTGATGCATTATGTACCTG+AGG | 0.715793 | 3.4:+71924090 | MS.gene031845:CDS |
| TGGTTGCGAGGTTGAAACGA+CGG | 0.733707 | 3.4:-71922107 | None:intergenic |
| AGCGAGAGGAGAATTCATAG+CGG | 0.791927 | 3.4:-71922300 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATGAAATTTAAGTAAA+AGG | - | chr3.4:71922695-71922714 | None:intergenic | 10.0% |
| !! | ATACAAATTTAAGAAATGAA+AGG | - | chr3.4:71922403-71922422 | None:intergenic | 15.0% |
| !! | ATTTGATAAATATCATTAGT+TGG | - | chr3.4:71922933-71922952 | None:intergenic | 15.0% |
| !! | CTTGTAATTTAATTATTGTT+TGG | - | chr3.4:71922980-71922999 | None:intergenic | 15.0% |
| !! | GTTTCTCAATATAATATAAT+TGG | - | chr3.4:71924513-71924532 | None:intergenic | 15.0% |
| !!! | ATTATGTTTTTTTTATTTGC+AGG | - | chr3.4:71923231-71923250 | None:intergenic | 15.0% |
| !!! | ATTTGTAATATTCTGTTTTT+AGG | - | chr3.4:71923121-71923140 | None:intergenic | 15.0% |
| !!! | TTATGTTTTTTTTATTTGCA+GGG | - | chr3.4:71923230-71923249 | None:intergenic | 15.0% |
| !!! | TTCTTTTTAACAAAAAAATC+AGG | + | chr3.4:71923375-71923394 | MS.gene031845:intron | 15.0% |
| !!! | TTTTTTTTTTTAATTGTTGC+AGG | + | chr3.4:71922432-71922451 | MS.gene031845:intron | 15.0% |
| !! | ATTGGACAATTCATATAAAA+TGG | - | chr3.4:71924495-71924514 | None:intergenic | 20.0% |
| !! | TAATGTTGTACATTATAGAA+TGG | + | chr3.4:71923940-71923959 | MS.gene031845:intron | 20.0% |
| !! | TAGAATGTTAGTAAATTAGT+GGG | - | chr3.4:71923091-71923110 | None:intergenic | 20.0% |
| !! | TAGTTTATGATAGAACATTA+TGG | + | chr3.4:71922747-71922766 | MS.gene031845:intron | 20.0% |
| !! | TGCAAATCTTATAAGTTAAT+TGG | - | chr3.4:71924305-71924324 | None:intergenic | 20.0% |
| !! | TTAGAATGTTAGTAAATTAG+TGG | - | chr3.4:71923092-71923111 | None:intergenic | 20.0% |
| !! | TTGATTACCGTAAATATAAA+TGG | - | chr3.4:71924166-71924185 | None:intergenic | 20.0% |
| !!! | ATTTTTTAAAGAGAAACCTA+TGG | - | chr3.4:71923472-71923491 | None:intergenic | 20.0% |
| !!! | TATGTTTTTTTTATTTGCAG+GGG | - | chr3.4:71923229-71923248 | None:intergenic | 20.0% |
| !!! | TGTATTTGCTTTTTATATTG+TGG | + | chr3.4:71923967-71923986 | MS.gene031845:intron | 20.0% |
| !!! | TTATTTAAAGCAGCATTAAT+AGG | + | chr3.4:71924462-71924481 | MS.gene031845:intron | 20.0% |
| !!! | TTTTAACAAAAAAATCAGGA+GGG | + | chr3.4:71923379-71923398 | MS.gene031845:intron | 20.0% |
| !!! | TTTTTAACAAAAAAATCAGG+AGG | + | chr3.4:71923378-71923397 | MS.gene031845:intron | 20.0% |
| ! | AAACCCAAATAGAAAAAAAG+AGG | - | chr3.4:71923723-71923742 | None:intergenic | 25.0% |
| ! | AAATAGAATAAGAGATTGAG+AGG | + | chr3.4:71923252-71923271 | MS.gene031845:intron | 25.0% |
| ! | AACCCAAATAGAAAAAAAGA+GGG | - | chr3.4:71923722-71923741 | None:intergenic | 25.0% |
| ! | AGAGTATAGATTATTCATTG+AGG | - | chr3.4:71923757-71923776 | None:intergenic | 25.0% |
| ! | ATATAAATGGAAACAGCAAA+TGG | - | chr3.4:71924153-71924172 | None:intergenic | 25.0% |
| ! | TAATCAAATTGATTGGAAAC+TGG | + | chr3.4:71924179-71924198 | MS.gene031845:intron | 25.0% |
| ! | TTCAAGATGTCAAAACTAAA+TGG | + | chr3.4:71923551-71923570 | MS.gene031845:intron | 25.0% |
| ! | TTTAACAAAAAAATCAGGAG+GGG | + | chr3.4:71923380-71923399 | MS.gene031845:intron | 25.0% |
| ! | TTTACGGTAATCAAATTGAT+TGG | + | chr3.4:71924172-71924191 | MS.gene031845:intron | 25.0% |
| !! | AAATCAATTTTCACGATTGA+CGG | + | chr3.4:71922323-71922342 | MS.gene031845:CDS | 25.0% |
| !! | AAGTCTAAATACTTTTCCAT+AGG | + | chr3.4:71923453-71923472 | MS.gene031845:intron | 25.0% |
| !! | AAGTTTGCATTATCATTTTG+TGG | + | chr3.4:71924117-71924136 | MS.gene031845:intron | 25.0% |
| !! | GCTGTTTCCATTTATATTTA+CGG | + | chr3.4:71924156-71924175 | MS.gene031845:intron | 25.0% |
| !! | TTTAGTTTAGTCTCATTTCA+AGG | + | chr3.4:71922662-71922681 | MS.gene031845:intron | 25.0% |
| !!! | ATGGAAAAGTATTTAGACTT+GGG | - | chr3.4:71923453-71923472 | None:intergenic | 25.0% |
| !!! | ATTTAGTTTTGACATCTTGA+AGG | - | chr3.4:71923552-71923571 | None:intergenic | 25.0% |
| !!! | TATGGAAAAGTATTTAGACT+TGG | - | chr3.4:71923454-71923473 | None:intergenic | 25.0% |
| AATCAATCGTGTAAGACAAA+TGG | - | chr3.4:71924341-71924360 | None:intergenic | 30.0% | |
| AGAGTAGAAATCCATAATAG+CGG | - | chr3.4:71922547-71922566 | None:intergenic | 30.0% | |
| ATCGTCAAACTTAAAATGCA+AGG | + | chr3.4:71924010-71924029 | MS.gene031845:CDS | 30.0% | |
| ATTATGGATTTCTACTCTTC+CGG | + | chr3.4:71922549-71922568 | MS.gene031845:CDS | 30.0% | |
| CAAATAGAAAAAAAGAGGGA+GGG | - | chr3.4:71923718-71923737 | None:intergenic | 30.0% | |
| GCAATATCAACATAGAAATG+AGG | - | chr3.4:71922642-71922661 | None:intergenic | 30.0% | |
| TAGTCTCATTTCAAGGAATT+TGG | + | chr3.4:71922669-71922688 | MS.gene031845:intron | 30.0% | |
| ! | GATTTCGAGGGTATATTAAA+AGG | + | chr3.4:71924266-71924285 | MS.gene031845:intron | 30.0% |
| ! | TTTTGTCACTGTTACCAAAT+CGG | + | chr3.4:71922482-71922501 | MS.gene031845:CDS | 30.0% |
| !! | AGATTATTGTGATTAGTCTC+TGG | - | chr3.4:71922053-71922072 | None:intergenic | 30.0% |
| !! | CATTCTTAAGTTGATTTCGA+GGG | + | chr3.4:71924254-71924273 | MS.gene031845:intron | 30.0% |
| !!! | CTCCCTCTTTTTTTCTATTT+GGG | + | chr3.4:71923717-71923736 | MS.gene031845:intron | 30.0% |
| !!! | GTATGAGATTTTTCTAGCTT+AGG | + | chr3.4:71923523-71923542 | MS.gene031845:intron | 30.0% |
| AACATAAGAGACTCTGGATT+TGG | - | chr3.4:71922224-71922243 | None:intergenic | 35.0% | |
| AATCAACTTAAGAATGCCAC+AGG | - | chr3.4:71924250-71924269 | None:intergenic | 35.0% | |
| ACAGAATAGAAAGACCAAGT+TGG | + | chr3.4:71923779-71923798 | MS.gene031845:intron | 35.0% | |
| AGATAAAGTTCAACCCAACT+TGG | - | chr3.4:71923796-71923815 | None:intergenic | 35.0% | |
| ATAATAGCGGCAAAGATTTC+AGG | - | chr3.4:71922534-71922553 | None:intergenic | 35.0% | |
| ATCATGAATTGCTGTGTCTT+TGG | - | chr3.4:71922610-71922629 | None:intergenic | 35.0% | |
| ATTTGCAGGGGCAATTAATA+AGG | - | chr3.4:71923217-71923236 | None:intergenic | 35.0% | |
| CAGAATAGAAAGACCAAGTT+GGG | + | chr3.4:71923780-71923799 | MS.gene031845:intron | 35.0% | |
| CCAAATAGAAAAAAAGAGGG+AGG | - | chr3.4:71923719-71923738 | None:intergenic | 35.0% | |
| TACACGTAGTTCATTACAGA+AGG | - | chr3.4:71924222-71924241 | None:intergenic | 35.0% | |
| TAGTATGCACAATGACAGAT+AGG | - | chr3.4:71924397-71924416 | None:intergenic | 35.0% | |
| TGAAACAGTTGCAATGATCA+AGG | + | chr3.4:71923605-71923624 | MS.gene031845:CDS | 35.0% | |
| TGAAATCTTTGCCGCTATTA+TGG | + | chr3.4:71922533-71922552 | MS.gene031845:CDS | 35.0% | |
| ! | GGAATTACTCGTGTTTTCTT+TGG | + | chr3.4:71922453-71922472 | MS.gene031845:intron | 35.0% |
| ! | GTGAAAATTGATTTAGCGAG+AGG | - | chr3.4:71922317-71922336 | None:intergenic | 35.0% |
| ! | TGCAATGATCAAGGAACTTT+TGG | + | chr3.4:71923614-71923633 | MS.gene031845:CDS | 35.0% |
| ! | TTTTAGTGACCCAAGTTCTT+GGG | + | chr3.4:71923499-71923518 | MS.gene031845:intron | 35.0% |
| !! | ACATTGAAGGAGTACTAACT+AGG | + | chr3.4:71923028-71923047 | MS.gene031845:intron | 35.0% |
| !! | GCATTCTTAAGTTGATTTCG+AGG | + | chr3.4:71924253-71924272 | MS.gene031845:intron | 35.0% |
| !! | TAATGCAAACTTGTTACCTC+AGG | - | chr3.4:71924109-71924128 | None:intergenic | 35.0% |
| !! | TGTGGTTTTCTCTAGAGATA+CGG | + | chr3.4:71923985-71924004 | MS.gene031845:intron | 35.0% |
| !!! | CCTCCCTCTTTTTTTCTATT+TGG | + | chr3.4:71923716-71923735 | MS.gene031845:intron | 35.0% |
| !!! | TAGTTTTGACATCTTGAAGG+TGG | - | chr3.4:71923549-71923568 | None:intergenic | 35.0% |
| AAAAGTCCTGACCTCAATTC+AGG | + | chr3.4:71922848-71922867 | MS.gene031845:intron | 40.0% | |
| AAACATAGTCCTCCTTTGTC+CGG | - | chr3.4:71922183-71922202 | None:intergenic | 40.0% | |
| AAACCTTAGTCCACTAAGTG+GGG | - | chr3.4:71922796-71922815 | None:intergenic | 40.0% | |
| AAATACAAAGCCTGACTGGT+GGG | + | chr3.4:71923296-71923315 | MS.gene031845:intron | 40.0% | |
| AAATGGAGAAGGAAATGGTG+AGG | - | chr3.4:71922156-71922175 | None:intergenic | 40.0% | |
| AAGGAAATACAAAGCCTGAC+TGG | + | chr3.4:71923292-71923311 | MS.gene031845:intron | 40.0% | |
| ACAAATTGTTCTCGTTGCCT+GGG | + | chr3.4:71922077-71922096 | MS.gene031845:CDS | 40.0% | |
| ACAAGTCTATCGTCACAAGT+AGG | + | chr3.4:71922995-71923014 | MS.gene031845:intron | 40.0% | |
| ACTTAAGAATGCCACAGGAA+AGG | - | chr3.4:71924245-71924264 | None:intergenic | 40.0% | |
| ATAGAAAAAAAGAGGGAGGG+AGG | - | chr3.4:71923715-71923734 | None:intergenic | 40.0% | |
| ATCTCATACTCCCAAGAACT+TGG | - | chr3.4:71923512-71923531 | None:intergenic | 40.0% | |
| ATGCTTACCTGTTTGCATAC+AGG | + | chr3.4:71923575-71923594 | MS.gene031845:intron | 40.0% | |
| CAAACCTTAGTCCACTAAGT+GGG | - | chr3.4:71922797-71922816 | None:intergenic | 40.0% | |
| CGTAGTTCATTACAGAAGGA+CGG | - | chr3.4:71924218-71924237 | None:intergenic | 40.0% | |
| GAATCATCCTGTATGCAAAC+AGG | - | chr3.4:71923585-71923604 | None:intergenic | 40.0% | |
| GAGTCTCTTATGTTTCATCC+TGG | + | chr3.4:71922230-71922249 | MS.gene031845:CDS | 40.0% | |
| GCAAGTTTCCAAGACAATGT+TGG | + | chr3.4:71923905-71923924 | MS.gene031845:intron | 40.0% | |
| GGATGAAACATAAGAGACTC+TGG | - | chr3.4:71922230-71922249 | None:intergenic | 40.0% | |
| GGCTGTAGATTTGAAAGGAA+AGG | + | chr3.4:71923273-71923292 | MS.gene031845:intron | 40.0% | |
| GGGATGGATGATTGATGAAT+GGG | + | chr3.4:71923316-71923335 | MS.gene031845:intron | 40.0% | |
| GTCGTAATCGTCTTCCTAAT+CGG | - | chr3.4:71922007-71922026 | None:intergenic | 40.0% | |
| GTGGAAAATGGAGAAGGAAA+TGG | - | chr3.4:71922161-71922180 | None:intergenic | 40.0% | |
| TACAAATTGTTCTCGTTGCC+TGG | + | chr3.4:71922076-71922095 | MS.gene031845:CDS | 40.0% | |
| TCAAACCTTAGTCCACTAAG+TGG | - | chr3.4:71922798-71922817 | None:intergenic | 40.0% | |
| TCTCATACTCCCAAGAACTT+GGG | - | chr3.4:71923511-71923530 | None:intergenic | 40.0% | |
| TGAGAGGCTGTAGATTTGAA+AGG | + | chr3.4:71923268-71923287 | MS.gene031845:intron | 40.0% | |
| TGCCTCGATTCAAAAACCAT+TGG | + | chr3.4:71923412-71923431 | MS.gene031845:intron | 40.0% | |
| TGGGATGGATGATTGATGAA+TGG | + | chr3.4:71923315-71923334 | MS.gene031845:intron | 40.0% | |
| TGTCAACACCAACATTGTCT+TGG | - | chr3.4:71923916-71923935 | None:intergenic | 40.0% | |
| TTAGACTTGGGAGATACAAG+AGG | - | chr3.4:71923441-71923460 | None:intergenic | 40.0% | |
| TTAGGAAGACGATTACGACT+AGG | + | chr3.4:71922008-71922027 | MS.gene031845:CDS | 40.0% | |
| TTGCTGCATTTACAGGTCAA+AGG | + | chr3.4:71924549-71924568 | MS.gene031845:intron | 40.0% | |
| ! | AACTGTACAAGATGATGGTG+GGG | + | chr3.4:71923653-71923672 | MS.gene031845:CDS | 40.0% |
| ! | AATGGTTTTTGAATCGAGGC+AGG | - | chr3.4:71923413-71923432 | None:intergenic | 40.0% |
| ! | AATTGCTGTGTCTTTGGAAG+CGG | - | chr3.4:71922604-71922623 | None:intergenic | 40.0% |
| ! | ATGGTTTTTGAATCGAGGCA+GGG | - | chr3.4:71923412-71923431 | None:intergenic | 40.0% |
| ! | CAAAGGTGTGGAACAAGAAT+TGG | + | chr3.4:71924566-71924585 | MS.gene031845:CDS | 40.0% |
| ! | CAACTGTACAAGATGATGGT+GGG | + | chr3.4:71923652-71923671 | MS.gene031845:CDS | 40.0% |
| ! | CTTTTAGTGACCCAAGTTCT+TGG | + | chr3.4:71923498-71923517 | MS.gene031845:intron | 40.0% |
| ! | TGCCAATGGTTTTTGAATCG+AGG | - | chr3.4:71923417-71923436 | None:intergenic | 40.0% |
| ! | TTTCCTTCTCCATTTTCCAC+CGG | + | chr3.4:71922161-71922180 | MS.gene031845:CDS | 40.0% |
| !! | AGGAAGAGAAAAAGGCATTG+TGG | - | chr3.4:71922130-71922149 | None:intergenic | 40.0% |
| !! | GTGATTAGTCTCTGGTTTGA+GGG | - | chr3.4:71922045-71922064 | None:intergenic | 40.0% |
| !! | GTGGTTTTCTCTAGAGATAC+GGG | + | chr3.4:71923986-71924005 | MS.gene031845:intron | 40.0% |
| !! | TGGTTTTCTCTAGAGATACG+GGG | + | chr3.4:71923987-71924006 | MS.gene031845:intron | 40.0% |
| !! | TGTGATTAGTCTCTGGTTTG+AGG | - | chr3.4:71922046-71922065 | None:intergenic | 40.0% |
| AACTACGTGTACCTTTCCTG+TGG | + | chr3.4:71924231-71924250 | MS.gene031845:intron | 45.0% | |
| AAGAGACTCTGGATTTGGAG+TGG | - | chr3.4:71922219-71922238 | None:intergenic | 45.0% | |
| ACATCCATGACAGGTTTACC+AGG | - | chr3.4:71922251-71922270 | None:intergenic | 45.0% | |
| AGCGAGAGGAGAATTCATAG+CGG | - | chr3.4:71922303-71922322 | None:intergenic | 45.0% | |
| CAAATCGGAAGATGCATCGT+GGG | + | chr3.4:71922497-71922516 | MS.gene031845:CDS | 45.0% | |
| CCACCATCATCTTGTACAGT+TGG | - | chr3.4:71923654-71923673 | None:intergenic | 45.0% | |
| CGACCAACTGTACAAGATGA+TGG | + | chr3.4:71923648-71923667 | MS.gene031845:CDS | 45.0% | |
| GAAATACAAAGCCTGACTGG+TGG | + | chr3.4:71923295-71923314 | MS.gene031845:intron | 45.0% | |
| GAGATACAAGAGGATGCCAA+TGG | - | chr3.4:71923431-71923450 | None:intergenic | 45.0% | |
| GCATTTACAGGTCAAAGGTG+TGG | + | chr3.4:71924554-71924573 | MS.gene031845:intron | 45.0% | |
| GCTGATGCATTATGTACCTG+AGG | + | chr3.4:71924090-71924109 | MS.gene031845:CDS | 45.0% | |
| GCTTGAGAGTCTAGAAAGAG+TGG | - | chr3.4:71922579-71922598 | None:intergenic | 45.0% | |
| GGTAAACCTGTCATGGATGT+TGG | + | chr3.4:71922251-71922270 | MS.gene031845:CDS | 45.0% | |
| GGTGGGGACATTGTATATTG+TGG | + | chr3.4:71923669-71923688 | MS.gene031845:CDS | 45.0% | |
| GGTGTGGAACAAGAATTGGA+TGG | + | chr3.4:71924570-71924589 | MS.gene031845:CDS | 45.0% | |
| GTAAATGCAGCAAGCAGCAT+TGG | - | chr3.4:71924542-71924561 | None:intergenic | 45.0% | |
| GTCTAGAAAGAGTGGTTCAC+CGG | - | chr3.4:71922571-71922590 | None:intergenic | 45.0% | |
| TACAGAAGGACGGTAAGTTG+AGG | - | chr3.4:71924208-71924227 | None:intergenic | 45.0% | |
| TCAGAGTCACCGAAGAACTT+GGG | - | chr3.4:71924051-71924070 | None:intergenic | 45.0% | |
| TCATCCTGGTAAACCTGTCA+TGG | + | chr3.4:71922244-71922263 | MS.gene031845:CDS | 45.0% | |
| TGCACAATGACAGATAGGTC+TGG | - | chr3.4:71924392-71924411 | None:intergenic | 45.0% | |
| TTCAGAGTCACCGAAGAACT+TGG | - | chr3.4:71924052-71924071 | None:intergenic | 45.0% | |
| ! | AAAATGCAAGGAGCGTGTAG+TGG | + | chr3.4:71924022-71924041 | MS.gene031845:CDS | 45.0% |
| ! | AGGGGTAGTGTTTTCCGATT+AGG | + | chr3.4:71921990-71922009 | MS.gene031845:CDS | 45.0% |
| ! | ATGCTGCTTGCTGCATTTAC+AGG | + | chr3.4:71924542-71924561 | MS.gene031845:intron | 45.0% |
| ! | CCAACTGTACAAGATGATGG+TGG | + | chr3.4:71923651-71923670 | MS.gene031845:CDS | 45.0% |
| ! | GAGAATTCATAGCGGAACGA+GGG | - | chr3.4:71922295-71922314 | None:intergenic | 45.0% |
| ! | TGGTTTTTGAATCGAGGCAG+GGG | - | chr3.4:71923411-71923430 | None:intergenic | 45.0% |
| !! | AAAAAGGCATTGTGGTTGCG+AGG | - | chr3.4:71922122-71922141 | None:intergenic | 45.0% |
| !! | GAAGAGGAAGCAGCTTTAAG+TGG | + | chr3.4:71924597-71924616 | MS.gene031845:CDS | 45.0% |
| !! | GATTTGGAGTGGACTGTGTT+TGG | - | chr3.4:71922208-71922227 | None:intergenic | 45.0% |
| !!! | AAATTTATCATAATTTTTTT+AGG | + | chr3.4:71923137-71923156 | MS.gene031845:intron | 5.0% |
| AATCATCCATCCCACCAGTC+AGG | - | chr3.4:71923309-71923328 | None:intergenic | 50.0% | |
| AGAATTGGATGGCGAGGAAG+AGG | + | chr3.4:71924581-71924600 | MS.gene031845:CDS | 50.0% | |
| AGAGAGAGAGAGAGAGAGAG+AGG | - | chr3.4:71922353-71922372 | None:intergenic | 50.0% | |
| AGGCAGCTGAGAGACATTGA+AGG | + | chr3.4:71923015-71923034 | MS.gene031845:intron | 50.0% | |
| CCAAATCGGAAGATGCATCG+TGG | + | chr3.4:71922496-71922515 | MS.gene031845:CDS | 50.0% | |
| CCACGATGCATCTTCCGATT+TGG | - | chr3.4:71922499-71922518 | None:intergenic | 50.0% | |
| CTCCTTTGTCCGGTGGAAAA+TGG | - | chr3.4:71922173-71922192 | None:intergenic | 50.0% | |
| CTTAGTCCACTAAGTGGGGT+CGG | - | chr3.4:71922792-71922811 | None:intergenic | 50.0% | |
| GAGAGAGAGAGAGAGAGAGA+GGG | - | chr3.4:71922354-71922373 | None:intergenic | 50.0% | |
| GGAACAAGAATTGGATGGCG+AGG | + | chr3.4:71924575-71924594 | MS.gene031845:CDS | 50.0% | |
| TAGTGGCTGCCCAAGTTCTT+CGG | + | chr3.4:71924039-71924058 | MS.gene031845:CDS | 50.0% | |
| TCCTGACCTCAATTCAGGTG+CGG | + | chr3.4:71922853-71922872 | MS.gene031845:intron | 50.0% | |
| TGAGGCGGAGGAAGAGAAAA+AGG | - | chr3.4:71922138-71922157 | None:intergenic | 50.0% | |
| TGGAGAAGGAAATGGTGAGG+CGG | - | chr3.4:71922153-71922172 | None:intergenic | 50.0% | |
| TGGTTGCGAGGTTGAAACGA+CGG | - | chr3.4:71922110-71922129 | None:intergenic | 50.0% | |
| TGTCCGGTGGAAAATGGAGA+AGG | - | chr3.4:71922167-71922186 | None:intergenic | 50.0% | |
| ! | CATTTTCCACCGGACAAAGG+AGG | + | chr3.4:71922171-71922190 | MS.gene031845:CDS | 50.0% |
| ! | CTCCATTTTCCACCGGACAA+AGG | + | chr3.4:71922168-71922187 | MS.gene031845:CDS | 50.0% |
| ! | GGAGAATTCATAGCGGAACG+AGG | - | chr3.4:71922296-71922315 | None:intergenic | 50.0% |
| ! | TTCATAGCGGAACGAGGGTT+CGG | - | chr3.4:71922290-71922309 | None:intergenic | 50.0% |
| !! | TCTTCGGTGACTCTGAAGTC+AGG | + | chr3.4:71924055-71924074 | MS.gene031845:CDS | 50.0% |
| ACAAAGCCTGACTGGTGGGA+TGG | + | chr3.4:71923300-71923319 | MS.gene031845:intron | 55.0% | |
| ACTAAGTGGGGTCGGCTACA+TGG | - | chr3.4:71922784-71922803 | None:intergenic | 55.0% | |
| AGAAGGAAATGGTGAGGCGG+AGG | - | chr3.4:71922150-71922169 | None:intergenic | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | + | chr3.4:71922783-71922802 | MS.gene031845:intron | 55.0% | |
| CATAGTCCTCCTTTGTCCGG+TGG | - | chr3.4:71922180-71922199 | None:intergenic | 55.0% | |
| GCGCTACCAACATCCATGAC+AGG | - | chr3.4:71922260-71922279 | None:intergenic | 55.0% | |
| GGAACGAGGGTTCGGGAAAT+CGG | - | chr3.4:71922282-71922301 | None:intergenic | 55.0% | |
| GGGAGGGAGGAGAGAACTTA+CGG | - | chr3.4:71923702-71923721 | None:intergenic | 55.0% | |
| TCCGCACCTGAATTGAGGTC+AGG | - | chr3.4:71922857-71922876 | None:intergenic | 55.0% | |
| ! | TCATAGCGGAACGAGGGTTC+GGG | - | chr3.4:71922289-71922308 | None:intergenic | 55.0% |
| !! | CGACCCCACTTAGTGGACTA+AGG | + | chr3.4:71922790-71922809 | MS.gene031845:intron | 55.0% |
| AGCCAGGATTGGGGAACTGG+GGG | + | chr3.4:71922876-71922895 | MS.gene031845:intron | 60.0% | |
| ATCCCCCAGTTCCCCAATCC+TGG | - | chr3.4:71922881-71922900 | None:intergenic | 60.0% | |
| CTCAATTCAGGTGCGGAGCC+AGG | + | chr3.4:71922860-71922879 | MS.gene031845:intron | 60.0% | |
| CTGGCTCCGCACCTGAATTG+AGG | - | chr3.4:71922862-71922881 | None:intergenic | 60.0% | |
| GAGCCAGGATTGGGGAACTG+GGG | + | chr3.4:71922875-71922894 | MS.gene031845:intron | 60.0% | |
| GGAGCCAGGATTGGGGAACT+GGG | + | chr3.4:71922874-71922893 | MS.gene031845:intron | 60.0% | |
| TCAGGTGCGGAGCCAGGATT+GGG | + | chr3.4:71922866-71922885 | MS.gene031845:intron | 60.0% | |
| TTCAGGTGCGGAGCCAGGAT+TGG | + | chr3.4:71922865-71922884 | MS.gene031845:intron | 60.0% | |
| !! | GAAACGACGGTGTTGTGCCC+AGG | - | chr3.4:71922097-71922116 | None:intergenic | 60.0% |
| CAGGTGCGGAGCCAGGATTG+GGG | + | chr3.4:71922867-71922886 | MS.gene031845:intron | 65.0% | |
| CGGAGCCAGGATTGGGGAAC+TGG | + | chr3.4:71922873-71922892 | MS.gene031845:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 71921978 | 71924632 | 71921978 | ID=MS.gene031845 |
| chr3.4 | mRNA | 71921978 | 71924632 | 71921978 | ID=MS.gene031845.t1;Parent=MS.gene031845 |
| chr3.4 | exon | 71921978 | 71922344 | 71921978 | ID=MS.gene031845.t1.exon1;Parent=MS.gene031845.t1 |
| chr3.4 | CDS | 71921978 | 71922344 | 71921978 | ID=cds.MS.gene031845.t1;Parent=MS.gene031845.t1 |
| chr3.4 | exon | 71922454 | 71922629 | 71922454 | ID=MS.gene031845.t1.exon2;Parent=MS.gene031845.t1 |
| chr3.4 | CDS | 71922454 | 71922629 | 71922454 | ID=cds.MS.gene031845.t1;Parent=MS.gene031845.t1 |
| chr3.4 | exon | 71923597 | 71923700 | 71923597 | ID=MS.gene031845.t1.exon3;Parent=MS.gene031845.t1 |
| chr3.4 | CDS | 71923597 | 71923700 | 71923597 | ID=cds.MS.gene031845.t1;Parent=MS.gene031845.t1 |
| chr3.4 | exon | 71924000 | 71924111 | 71924000 | ID=MS.gene031845.t1.exon4;Parent=MS.gene031845.t1 |
| chr3.4 | CDS | 71924000 | 71924111 | 71924000 | ID=cds.MS.gene031845.t1;Parent=MS.gene031845.t1 |
| chr3.4 | exon | 71924564 | 71924632 | 71924564 | ID=MS.gene031845.t1.exon5;Parent=MS.gene031845.t1 |
| chr3.4 | CDS | 71924564 | 71924632 | 71924564 | ID=cds.MS.gene031845.t1;Parent=MS.gene031845.t1 |
| Gene Sequence |
| Protein sequence |
