Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene27350.t1 | XP_013466045.1 | 99.3 | 271 | 2 | 0 | 1 | 271 | 97 | 367 | 2.30E-157 | 564.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene27350.t1 | Q9LN68 | 80.6 | 273 | 50 | 2 | 1 | 271 | 80 | 351 | 1.5e-128 | 460.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene27350.t1 | A0A072VDI5 | 99.3 | 271 | 2 | 0 | 1 | 271 | 97 | 367 | 1.7e-157 | 564.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049227 | MS.gene27350 | 0.891386 | 4.17E-74 | -1.69E-46 |
MS.gene050238 | MS.gene27350 | 0.800241 | 1.58E-48 | -1.69E-46 |
MS.gene051021 | MS.gene27350 | 0.809486 | 1.85E-50 | -1.69E-46 |
MS.gene05224 | MS.gene27350 | 0.809572 | 1.77E-50 | -1.69E-46 |
MS.gene053143 | MS.gene27350 | 0.803644 | 3.16E-49 | -1.69E-46 |
MS.gene053144 | MS.gene27350 | 0.848551 | 5.70E-60 | -1.69E-46 |
MS.gene054480 | MS.gene27350 | 0.82556 | 4.39E-54 | -1.69E-46 |
MS.gene054584 | MS.gene27350 | 0.842587 | 2.36E-58 | -1.69E-46 |
MS.gene055469 | MS.gene27350 | 0.809335 | 1.99E-50 | -1.69E-46 |
MS.gene055537 | MS.gene27350 | 0.80052 | 1.39E-48 | -1.69E-46 |
MS.gene058720 | MS.gene27350 | 0.805782 | 1.13E-49 | -1.69E-46 |
MS.gene059426 | MS.gene27350 | 0.814809 | 1.28E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene27350 | MS.gene060376 | PPI |
MS.gene041483 | MS.gene27350 | PPI |
MS.gene27350 | MS.gene035252 | PPI |
MS.gene27350 | MS.gene036565 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene27350.t1 | MTR_1g021855 | 99.262 | 271 | 2 | 0 | 1 | 271 | 97 | 367 | 0.0 | 561 |
MS.gene27350.t1 | MTR_3g111600 | 85.978 | 271 | 37 | 1 | 1 | 271 | 12 | 281 | 6.43e-177 | 488 |
MS.gene27350.t1 | MTR_5g019220 | 79.636 | 275 | 51 | 2 | 1 | 271 | 94 | 367 | 4.47e-164 | 459 |
MS.gene27350.t1 | MTR_8g078240 | 78.309 | 272 | 56 | 2 | 1 | 270 | 74 | 344 | 2.36e-163 | 457 |
MS.gene27350.t1 | MTR_3g092310 | 66.792 | 265 | 84 | 2 | 2 | 264 | 71 | 333 | 3.65e-134 | 383 |
MS.gene27350.t1 | MTR_7g094230 | 64.015 | 264 | 93 | 1 | 1 | 264 | 83 | 344 | 7.87e-127 | 364 |
MS.gene27350.t1 | MTR_7g109210 | 63.359 | 262 | 92 | 2 | 1 | 262 | 93 | 350 | 3.82e-126 | 363 |
MS.gene27350.t1 | MTR_4g118030 | 62.406 | 266 | 97 | 2 | 1 | 265 | 77 | 340 | 5.62e-124 | 357 |
MS.gene27350.t1 | MTR_5g036580 | 62.313 | 268 | 96 | 2 | 1 | 264 | 94 | 360 | 1.22e-123 | 358 |
MS.gene27350.t1 | MTR_6g008900 | 61.940 | 268 | 95 | 3 | 1 | 262 | 93 | 359 | 1.93e-121 | 351 |
MS.gene27350.t1 | MTR_4g071620 | 61.940 | 268 | 95 | 3 | 1 | 262 | 93 | 359 | 1.93e-121 | 351 |
MS.gene27350.t1 | MTR_1g089820 | 63.740 | 262 | 93 | 1 | 1 | 262 | 86 | 345 | 2.46e-121 | 350 |
MS.gene27350.t1 | MTR_2g461670 | 32.642 | 193 | 118 | 6 | 69 | 260 | 395 | 576 | 2.63e-21 | 93.6 |
MS.gene27350.t1 | MTR_4g109890 | 33.161 | 193 | 117 | 6 | 69 | 260 | 340 | 521 | 1.73e-20 | 90.9 |
MS.gene27350.t1 | MTR_3g107930 | 27.843 | 255 | 171 | 8 | 15 | 267 | 337 | 580 | 2.84e-19 | 87.4 |
MS.gene27350.t1 | MTR_3g107930 | 27.843 | 255 | 171 | 8 | 15 | 267 | 414 | 657 | 3.31e-19 | 87.4 |
MS.gene27350.t1 | MTR_2g082650 | 30.151 | 199 | 122 | 8 | 69 | 260 | 209 | 397 | 2.15e-18 | 84.3 |
MS.gene27350.t1 | MTR_2g082650 | 30.151 | 199 | 122 | 8 | 69 | 260 | 338 | 526 | 5.06e-18 | 84.0 |
MS.gene27350.t1 | MTR_2g015550 | 31.351 | 185 | 119 | 5 | 69 | 253 | 339 | 515 | 5.88e-18 | 83.6 |
MS.gene27350.t1 | MTR_8g092000 | 29.444 | 180 | 114 | 5 | 69 | 245 | 384 | 553 | 1.25e-17 | 82.8 |
MS.gene27350.t1 | MTR_7g055600 | 28.643 | 199 | 132 | 6 | 69 | 267 | 238 | 426 | 3.01e-16 | 78.2 |
MS.gene27350.t1 | MTR_7g057530 | 28.643 | 199 | 132 | 6 | 69 | 267 | 238 | 426 | 3.01e-16 | 78.2 |
MS.gene27350.t1 | MTR_7g012370 | 28.571 | 182 | 116 | 6 | 69 | 243 | 334 | 508 | 6.27e-16 | 77.8 |
MS.gene27350.t1 | MTR_7g075840 | 27.136 | 199 | 135 | 5 | 69 | 267 | 468 | 656 | 6.59e-16 | 77.8 |
MS.gene27350.t1 | MTR_2g027740 | 29.444 | 180 | 114 | 5 | 69 | 245 | 471 | 640 | 7.04e-16 | 77.8 |
MS.gene27350.t1 | MTR_4g133570 | 29.648 | 199 | 123 | 8 | 69 | 260 | 261 | 449 | 8.90e-16 | 77.0 |
MS.gene27350.t1 | MTR_6g016380 | 28.646 | 192 | 127 | 6 | 69 | 260 | 359 | 540 | 1.04e-14 | 73.9 |
MS.gene27350.t1 | MTR_3g452360 | 22.185 | 302 | 176 | 10 | 4 | 260 | 79 | 366 | 1.19e-14 | 73.6 |
MS.gene27350.t1 | MTR_8g033360 | 30.137 | 146 | 98 | 3 | 69 | 214 | 437 | 578 | 1.68e-14 | 73.6 |
MS.gene27350.t1 | MTR_3g452360 | 22.185 | 302 | 176 | 10 | 4 | 260 | 228 | 515 | 1.94e-14 | 73.2 |
MS.gene27350.t1 | MTR_7g096160 | 27.957 | 186 | 124 | 7 | 67 | 249 | 453 | 631 | 8.30e-13 | 68.6 |
MS.gene27350.t1 | MTR_6g013840 | 28.947 | 114 | 73 | 3 | 149 | 260 | 410 | 517 | 1.59e-11 | 64.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene27350.t1 | AT3G50760 | 76.838 | 272 | 59 | 3 | 1 | 269 | 68 | 338 | 2.66e-155 | 436 |
MS.gene27350.t1 | AT1G19300 | 80.220 | 273 | 51 | 2 | 1 | 271 | 80 | 351 | 1.08e-153 | 432 |
MS.gene27350.t1 | AT4G02130 | 66.038 | 265 | 87 | 2 | 1 | 264 | 81 | 343 | 3.51e-134 | 383 |
MS.gene27350.t1 | AT4G02130 | 66.038 | 265 | 87 | 2 | 1 | 264 | 81 | 343 | 3.51e-134 | 383 |
MS.gene27350.t1 | AT4G02130 | 66.038 | 265 | 87 | 2 | 1 | 264 | 81 | 343 | 3.51e-134 | 383 |
MS.gene27350.t1 | AT3G62660 | 67.939 | 262 | 80 | 2 | 1 | 262 | 98 | 355 | 2.75e-132 | 379 |
MS.gene27350.t1 | AT3G06260 | 62.406 | 266 | 97 | 2 | 1 | 265 | 81 | 344 | 1.11e-125 | 362 |
MS.gene27350.t1 | AT1G02720 | 62.642 | 265 | 96 | 2 | 1 | 264 | 96 | 358 | 2.23e-124 | 358 |
MS.gene27350.t1 | AT1G02720 | 62.642 | 265 | 96 | 2 | 1 | 264 | 96 | 358 | 2.23e-124 | 358 |
MS.gene27350.t1 | AT3G28340 | 61.798 | 267 | 99 | 3 | 1 | 265 | 86 | 351 | 2.75e-124 | 358 |
MS.gene27350.t1 | AT1G24170 | 61.567 | 268 | 98 | 2 | 1 | 264 | 100 | 366 | 8.85e-124 | 358 |
MS.gene27350.t1 | AT1G13250 | 64.103 | 273 | 94 | 3 | 1 | 271 | 75 | 345 | 3.16e-123 | 355 |
MS.gene27350.t1 | AT1G70090 | 60.075 | 268 | 102 | 2 | 1 | 264 | 97 | 363 | 2.87e-122 | 354 |
MS.gene27350.t1 | AT1G70090 | 60.075 | 268 | 102 | 2 | 1 | 264 | 97 | 363 | 2.87e-122 | 354 |
MS.gene27350.t1 | AT1G18580 | 32.258 | 186 | 117 | 5 | 69 | 253 | 342 | 519 | 3.28e-21 | 93.2 |
MS.gene27350.t1 | AT5G47780 | 31.667 | 180 | 110 | 5 | 69 | 245 | 420 | 589 | 1.13e-19 | 89.0 |
MS.gene27350.t1 | AT5G54690 | 28.054 | 221 | 142 | 8 | 47 | 260 | 309 | 519 | 4.69e-19 | 87.0 |
MS.gene27350.t1 | AT3G61130 | 30.198 | 202 | 125 | 7 | 69 | 267 | 477 | 665 | 5.04e-18 | 84.0 |
MS.gene27350.t1 | AT4G38270 | 27.869 | 244 | 167 | 6 | 19 | 261 | 434 | 669 | 1.90e-17 | 82.4 |
MS.gene27350.t1 | AT4G38270 | 27.869 | 244 | 167 | 6 | 19 | 261 | 430 | 665 | 1.97e-17 | 82.4 |
MS.gene27350.t1 | AT3G01040 | 24.427 | 262 | 173 | 9 | 14 | 260 | 233 | 484 | 3.65e-17 | 81.3 |
MS.gene27350.t1 | AT3G25140 | 29.000 | 200 | 123 | 5 | 69 | 262 | 363 | 549 | 6.13e-17 | 80.9 |
MS.gene27350.t1 | AT3G58790 | 30.000 | 200 | 122 | 8 | 69 | 260 | 204 | 393 | 8.82e-17 | 79.7 |
MS.gene27350.t1 | AT3G58790 | 30.000 | 200 | 122 | 8 | 69 | 260 | 336 | 525 | 1.11e-16 | 80.1 |
MS.gene27350.t1 | AT3G01040 | 27.136 | 199 | 128 | 7 | 69 | 260 | 329 | 517 | 1.13e-16 | 79.7 |
MS.gene27350.t1 | AT3G01040 | 27.136 | 199 | 128 | 7 | 69 | 260 | 329 | 517 | 1.13e-16 | 79.7 |
MS.gene27350.t1 | AT1G06780 | 27.953 | 254 | 156 | 9 | 6 | 243 | 331 | 573 | 3.71e-16 | 78.6 |
MS.gene27350.t1 | AT1G06780 | 27.953 | 254 | 156 | 9 | 6 | 243 | 318 | 560 | 3.92e-16 | 78.2 |
MS.gene27350.t1 | AT2G30575 | 28.077 | 260 | 160 | 12 | 6 | 249 | 339 | 587 | 4.94e-16 | 78.2 |
MS.gene27350.t1 | AT5G15470 | 25.628 | 199 | 131 | 7 | 69 | 260 | 329 | 517 | 4.36e-15 | 75.1 |
MS.gene27350.t1 | AT2G46480 | 25.896 | 251 | 172 | 9 | 19 | 267 | 294 | 532 | 1.19e-13 | 70.9 |
MS.gene27350.t1 | AT2G46480 | 25.896 | 251 | 172 | 9 | 19 | 267 | 307 | 545 | 1.24e-13 | 70.9 |
MS.gene27350.t1 | AT2G20810 | 32.663 | 199 | 123 | 7 | 69 | 267 | 342 | 529 | 3.37e-13 | 69.7 |
MS.gene27350.t1 | AT3G02350 | 29.167 | 192 | 126 | 6 | 69 | 260 | 365 | 546 | 8.58e-12 | 65.5 |
Find 56 sgRNAs with CRISPR-Local
Find 69 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTGTCCTTTGGATGCTCTT+TGG | 0.179612 | 1.2:+2828356 | MS.gene27350:CDS |
TTGTCCTTTGGATGCTCTTT+GGG | 0.232558 | 1.2:+2828357 | MS.gene27350:CDS |
TTCGATGATTCAATCGTTTC+GGG | 0.244627 | 1.2:+2827749 | MS.gene27350:CDS |
CAATTATGCAAGAAGCTATT+TGG | 0.253341 | 1.2:+2827814 | MS.gene27350:CDS |
TTTACTTCACACCAACATTT+TGG | 0.256817 | 1.2:+2827987 | MS.gene27350:CDS |
AATCAAGAATCAAGAGAAAA+TGG | 0.308067 | 1.2:-2828403 | None:intergenic |
TTACTTTAATACCGGGGTTA+TGG | 0.328231 | 1.2:+2828054 | MS.gene27350:CDS |
TTTCGATGATTCAATCGTTT+CGG | 0.340870 | 1.2:+2827748 | MS.gene27350:CDS |
TGCTAATAGACCTTGTCCTT+TGG | 0.372206 | 1.2:+2828345 | MS.gene27350:CDS |
AAACCTTGTTACTTTAATAC+CGG | 0.397438 | 1.2:+2828046 | MS.gene27350:CDS |
TTGTTCCTGTGGATCATAGA+TGG | 0.412121 | 1.2:+2828209 | MS.gene27350:CDS |
GTCCAGTGAGTTTATTGCAT+TGG | 0.440935 | 1.2:+2828290 | MS.gene27350:CDS |
TGCAATAAACTCACTGGACC+TGG | 0.441630 | 1.2:-2828286 | None:intergenic |
AATTGTAGACTTGGAATTTG+AGG | 0.447752 | 1.2:-2827727 | None:intergenic |
AGGTAAACCATGGGTGAGAT+TGG | 0.454495 | 1.2:+2828321 | MS.gene27350:CDS |
GCGAATGTTAAAGACAAAGA+TGG | 0.456493 | 1.2:-2828016 | None:intergenic |
TTATTGCATTGGAGTGGAAA+AGG | 0.458081 | 1.2:+2828301 | MS.gene27350:CDS |
TGTAAGAAAAGTTGTGTACT+TGG | 0.460356 | 1.2:+2827856 | MS.gene27350:CDS |
GACAGAGAGGATTGCAGCCA+TGG | 0.467068 | 1.2:-2827606 | None:intergenic |
GGTGTCTGCAAAAGATCATA+AGG | 0.476961 | 1.2:-2828382 | None:intergenic |
AGATGGAATCAACATGGTCT+TGG | 0.481062 | 1.2:+2828226 | MS.gene27350:CDS |
TGCAGGGGAAATTGTTCCTG+TGG | 0.488544 | 1.2:+2828198 | MS.gene27350:CDS |
AATCATCGAAATTGTAGACT+TGG | 0.491592 | 1.2:-2827736 | None:intergenic |
TAGACTTGGAATTTGAGGTA+AGG | 0.496272 | 1.2:-2827722 | None:intergenic |
AACCTTGTTACTTTAATACC+GGG | 0.498666 | 1.2:+2828047 | MS.gene27350:CDS |
CTTTGTCGAGATCTTCATCC+AGG | 0.499442 | 1.2:+2828268 | MS.gene27350:CDS |
AGACTTGGAATTTGAGGTAA+GGG | 0.499769 | 1.2:-2827721 | None:intergenic |
AACAAAGATTGAGGAATGGA+TGG | 0.528450 | 1.2:+2828114 | MS.gene27350:CDS |
CGATATCATCAACTAAGATA+AGG | 0.533837 | 1.2:-2827886 | None:intergenic |
CGAATGTTAAAGACAAAGAT+GGG | 0.534888 | 1.2:-2828015 | None:intergenic |
TGTTAAAGACAAAGATGGGT+TGG | 0.537673 | 1.2:-2828011 | None:intergenic |
CTCCAATGCAATAAACTCAC+TGG | 0.539210 | 1.2:-2828292 | None:intergenic |
ATGAAGAAGTGAAGTGTTTG+AGG | 0.542144 | 1.2:-2827678 | None:intergenic |
AGGATGAGAATCTATGAACT+TGG | 0.551100 | 1.2:+2828148 | MS.gene27350:CDS |
TTTGTGGACATGATGAGTGT+TGG | 0.558842 | 1.2:-2827631 | None:intergenic |
GTGAGTTTATTGCATTGGAG+TGG | 0.561039 | 1.2:+2828295 | MS.gene27350:CDS |
ATCAAGTGCTGATCGAATTG+AGG | 0.561859 | 1.2:-2827783 | None:intergenic |
GTGGACATGATGAGTGTTGG+AGG | 0.566977 | 1.2:-2827628 | None:intergenic |
AATGGATGGAATTACAAAAG+AGG | 0.570341 | 1.2:+2828128 | MS.gene27350:CDS |
TGATTCCATCTATGATCCAC+AGG | 0.576078 | 1.2:-2828214 | None:intergenic |
TGGAATCAACATGGTCTTGG+TGG | 0.582134 | 1.2:+2828229 | MS.gene27350:CDS |
TTAGCATCCAATCTCACCCA+TGG | 0.582810 | 1.2:-2828328 | None:intergenic |
TAGCTTCTTGCATAATTGAG+TGG | 0.588805 | 1.2:-2827809 | None:intergenic |
TGATTACACAACAAAGATTG+AGG | 0.596745 | 1.2:+2828105 | MS.gene27350:CDS |
CAAAGAGCATCCAAAGGACA+AGG | 0.605477 | 1.2:-2828355 | None:intergenic |
ACCCCGGTATTAAAGTAACA+AGG | 0.631984 | 1.2:-2828049 | None:intergenic |
AAATTTGCATTGCAATACTC+CGG | 0.633009 | 1.2:-2827959 | None:intergenic |
ATGAGTGTTGGAGGACAGAG+AGG | 0.637026 | 1.2:-2827619 | None:intergenic |
GGAGTGGAAAAGGTAAACCA+TGG | 0.642822 | 1.2:+2828311 | MS.gene27350:CDS |
TAGATCAATTACCATAACCC+CGG | 0.646191 | 1.2:-2828065 | None:intergenic |
GATGGGTTGGACCAAAATGT+TGG | 0.647131 | 1.2:-2827998 | None:intergenic |
ACACAACAAAGATTGAGGAA+TGG | 0.651197 | 1.2:+2828110 | MS.gene27350:CDS |
GAGTGGAAAAGGTAAACCAT+GGG | 0.662161 | 1.2:+2828312 | MS.gene27350:CDS |
ACCTTGTTACTTTAATACCG+GGG | 0.664037 | 1.2:+2828048 | MS.gene27350:CDS |
GGTGCCCAAAGAGCATCCAA+AGG | 0.694592 | 1.2:-2828361 | None:intergenic |
GATCATAGATGGAATCAACA+TGG | 0.708687 | 1.2:+2828220 | MS.gene27350:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | TGGTAATTGATCTAGAAAAA+TGG | + | chr1.2:2828074-2828093 | MS.gene27350:CDS | 25.0% |
!! | AAGTGAAAAATGATGTTTTG+TGG | - | chr1.2:2827650-2827669 | None:intergenic | 25.0% |
!! | ACAACTTTTCTTACACATAA+TGG | - | chr1.2:2827851-2827870 | None:intergenic | 25.0% |
!!! | AAACCTTGTTACTTTAATAC+CGG | + | chr1.2:2828046-2828065 | MS.gene27350:CDS | 25.0% |
AAATTTGCATTGCAATACTC+CGG | - | chr1.2:2827962-2827981 | None:intergenic | 30.0% | |
AATCATCGAAATTGTAGACT+TGG | - | chr1.2:2827739-2827758 | None:intergenic | 30.0% | |
AATGGATGGAATTACAAAAG+AGG | + | chr1.2:2828128-2828147 | MS.gene27350:CDS | 30.0% | |
AATTGTAGACTTGGAATTTG+AGG | - | chr1.2:2827730-2827749 | None:intergenic | 30.0% | |
CAATTATGCAAGAAGCTATT+TGG | + | chr1.2:2827814-2827833 | MS.gene27350:CDS | 30.0% | |
CGAATGTTAAAGACAAAGAT+GGG | - | chr1.2:2828018-2828037 | None:intergenic | 30.0% | |
CGATATCATCAACTAAGATA+AGG | - | chr1.2:2827889-2827908 | None:intergenic | 30.0% | |
TGATTACACAACAAAGATTG+AGG | + | chr1.2:2828105-2828124 | MS.gene27350:CDS | 30.0% | |
TGTAAGAAAAGTTGTGTACT+TGG | + | chr1.2:2827856-2827875 | MS.gene27350:CDS | 30.0% | |
TTTCGATGATTCAATCGTTT+CGG | + | chr1.2:2827748-2827767 | MS.gene27350:CDS | 30.0% | |
! | TTTACTTCACACCAACATTT+TGG | + | chr1.2:2827987-2828006 | MS.gene27350:CDS | 30.0% |
!! | AACCTTGTTACTTTAATACC+GGG | + | chr1.2:2828047-2828066 | MS.gene27350:CDS | 30.0% |
!!! | AGGGAATGATTTTGAGATTA+TGG | - | chr1.2:2827705-2827724 | None:intergenic | 30.0% |
!!! | CTTTTTTGCTTGTTTTTGCA+GGG | + | chr1.2:2828182-2828201 | MS.gene27350:CDS | 30.0% |
!!! | TGCCAAAACTGCATTTTTTT+CGG | - | chr1.2:2827936-2827955 | None:intergenic | 30.0% |
!!! | TTTTTTGCTTGTTTTTGCAG+GGG | + | chr1.2:2828183-2828202 | MS.gene27350:CDS | 30.0% |
AACAAAGATTGAGGAATGGA+TGG | + | chr1.2:2828114-2828133 | MS.gene27350:CDS | 35.0% | |
ACACAACAAAGATTGAGGAA+TGG | + | chr1.2:2828110-2828129 | MS.gene27350:CDS | 35.0% | |
AGGATGAGAATCTATGAACT+TGG | + | chr1.2:2828148-2828167 | MS.gene27350:CDS | 35.0% | |
CCTGCAAAAACAAGCAAAAA+AGG | - | chr1.2:2828184-2828203 | None:intergenic | 35.0% | |
GATCATAGATGGAATCAACA+TGG | + | chr1.2:2828220-2828239 | MS.gene27350:CDS | 35.0% | |
GCAAAAACAAGCAAAAAAGG+TGG | - | chr1.2:2828181-2828200 | None:intergenic | 35.0% | |
GCGAATGTTAAAGACAAAGA+TGG | - | chr1.2:2828019-2828038 | None:intergenic | 35.0% | |
TAGATCAATTACCATAACCC+CGG | - | chr1.2:2828068-2828087 | None:intergenic | 35.0% | |
TAGCTTCTTGCATAATTGAG+TGG | - | chr1.2:2827812-2827831 | None:intergenic | 35.0% | |
TGTTAAAGACAAAGATGGGT+TGG | - | chr1.2:2828014-2828033 | None:intergenic | 35.0% | |
TTACTTTAATACCGGGGTTA+TGG | + | chr1.2:2828054-2828073 | MS.gene27350:CDS | 35.0% | |
TTATTGCATTGGAGTGGAAA+AGG | + | chr1.2:2828301-2828320 | MS.gene27350:CDS | 35.0% | |
TTCGATGATTCAATCGTTTC+GGG | + | chr1.2:2827749-2827768 | MS.gene27350:CDS | 35.0% | |
! | AGACTTGGAATTTGAGGTAA+GGG | - | chr1.2:2827724-2827743 | None:intergenic | 35.0% |
! | AGCCGAAAAAAATGCAGTTT+TGG | + | chr1.2:2827931-2827950 | MS.gene27350:CDS | 35.0% |
! | ATGAAGAAGTGAAGTGTTTG+AGG | - | chr1.2:2827681-2827700 | None:intergenic | 35.0% |
! | TAGACTTGGAATTTGAGGTA+AGG | - | chr1.2:2827725-2827744 | None:intergenic | 35.0% |
!! | ACCTTGTTACTTTAATACCG+GGG | + | chr1.2:2828048-2828067 | MS.gene27350:CDS | 35.0% |
!!! | ACTGCATTTTTTTCGGCTAA+TGG | - | chr1.2:2827929-2827948 | None:intergenic | 35.0% |
!!! | CCTTTTTTGCTTGTTTTTGC+AGG | + | chr1.2:2828181-2828200 | MS.gene27350:CDS | 35.0% |
ACCCCGGTATTAAAGTAACA+AGG | - | chr1.2:2828052-2828071 | None:intergenic | 40.0% | |
AGATGGAATCAACATGGTCT+TGG | + | chr1.2:2828226-2828245 | MS.gene27350:CDS | 40.0% | |
CTCCAATGCAATAAACTCAC+TGG | - | chr1.2:2828295-2828314 | None:intergenic | 40.0% | |
GAGTGGAAAAGGTAAACCAT+GGG | + | chr1.2:2828312-2828331 | MS.gene27350:CDS | 40.0% | |
GGTGTCTGCAAAAGATCATA+AGG | - | chr1.2:2828385-2828404 | None:intergenic | 40.0% | |
GTCCAGTGAGTTTATTGCAT+TGG | + | chr1.2:2828290-2828309 | MS.gene27350:CDS | 40.0% | |
GTGAGTTTATTGCATTGGAG+TGG | + | chr1.2:2828295-2828314 | MS.gene27350:CDS | 40.0% | |
TGATTCCATCTATGATCCAC+AGG | - | chr1.2:2828217-2828236 | None:intergenic | 40.0% | |
TGCTAATAGACCTTGTCCTT+TGG | + | chr1.2:2828345-2828364 | MS.gene27350:CDS | 40.0% | |
TTGTCCTTTGGATGCTCTTT+GGG | + | chr1.2:2828357-2828376 | MS.gene27350:CDS | 40.0% | |
TTGTTCCTGTGGATCATAGA+TGG | + | chr1.2:2828209-2828228 | MS.gene27350:CDS | 40.0% | |
TTTGTGGACATGATGAGTGT+TGG | - | chr1.2:2827634-2827653 | None:intergenic | 40.0% | |
!! | ATCAAGTGCTGATCGAATTG+AGG | - | chr1.2:2827786-2827805 | None:intergenic | 40.0% |
!!! | CTTGGTGGTGATAATTTTCG+AGG | + | chr1.2:2828244-2828263 | MS.gene27350:CDS | 40.0% |
AGGTAAACCATGGGTGAGAT+TGG | + | chr1.2:2828321-2828340 | MS.gene27350:CDS | 45.0% | |
CTTGTCCTTTGGATGCTCTT+TGG | + | chr1.2:2828356-2828375 | MS.gene27350:CDS | 45.0% | |
CTTTGTCGAGATCTTCATCC+AGG | + | chr1.2:2828268-2828287 | MS.gene27350:CDS | 45.0% | |
GATCTAGAAAAATGGCGCGA+CGG | + | chr1.2:2828082-2828101 | MS.gene27350:CDS | 45.0% | |
GGAGTGGAAAAGGTAAACCA+TGG | + | chr1.2:2828311-2828330 | MS.gene27350:CDS | 45.0% | |
TGCAATAAACTCACTGGACC+TGG | - | chr1.2:2828289-2828308 | None:intergenic | 45.0% | |
TTAGCATCCAATCTCACCCA+TGG | - | chr1.2:2828331-2828350 | None:intergenic | 45.0% | |
! | TGGAATCAACATGGTCTTGG+TGG | + | chr1.2:2828229-2828248 | MS.gene27350:CDS | 45.0% |
!! | AAATGCAGTTTTGGCAGCAC+CGG | + | chr1.2:2827940-2827959 | MS.gene27350:CDS | 45.0% |
!! | CAAAGAGCATCCAAAGGACA+AGG | - | chr1.2:2828358-2828377 | None:intergenic | 45.0% |
!! | GATGGGTTGGACCAAAATGT+TGG | - | chr1.2:2828001-2828020 | None:intergenic | 45.0% |
TGCAGGGGAAATTGTTCCTG+TGG | + | chr1.2:2828198-2828217 | MS.gene27350:CDS | 50.0% | |
!! | ATGAGTGTTGGAGGACAGAG+AGG | - | chr1.2:2827622-2827641 | None:intergenic | 50.0% |
!! | GTGGACATGATGAGTGTTGG+AGG | - | chr1.2:2827631-2827650 | None:intergenic | 50.0% |
!! | GGTGCCCAAAGAGCATCCAA+AGG | - | chr1.2:2828364-2828383 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 2827608 | 2828423 | 2827608 | ID=MS.gene27350 |
chr1.2 | mRNA | 2827608 | 2828423 | 2827608 | ID=MS.gene27350.t1;Parent=MS.gene27350 |
chr1.2 | exon | 2827608 | 2828423 | 2827608 | ID=MS.gene27350.t1.exon1;Parent=MS.gene27350.t1 |
chr1.2 | CDS | 2827608 | 2828423 | 2827608 | ID=cds.MS.gene27350.t1;Parent=MS.gene27350.t1 |
Gene Sequence |
Protein sequence |