AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene037125

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene037125.t1 MTR_2g043230 97.638 254 6 0 1 254 1 254 0.0 499
MS.gene037125.t1 MTR_4g124910 74.409 254 64 1 1 254 1 253 7.54e-139 390
MS.gene037125.t1 MTR_3g110030 38.947 95 56 2 159 253 3 95 5.58e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene037125.t1 AT5G20720 71.094 256 69 2 1 254 1 253 7.23e-129 365
MS.gene037125.t1 AT5G20720 71.094 256 69 2 1 254 1 253 7.23e-129 365
MS.gene037125.t1 AT5G20720 71.094 256 69 2 1 254 1 253 7.23e-129 365
MS.gene037125.t1 AT5G20720 71.094 256 69 2 1 254 1 253 7.23e-129 365

Find 69 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGTCATTACCAGCGTATT+TGG 0.227055 2.3:+46850090 None:intergenic
TGTCATGGCTGTACTCTCTT+AGG 0.316825 2.3:-46850023 None:intergenic
TTCATTCTGCTCGACATGTT+AGG 0.390168 2.3:-46852644 MS.gene037125:CDS
AGGAGCTTTGCATCCTTTGA+AGG 0.401756 2.3:-46852690 MS.gene037125:CDS
GTACACTGCAATCAAGCCTT+TGG 0.401887 2.3:-46851448 MS.gene037125:CDS
CAATCAAGCCTTTGGGTGAC+AGG 0.402537 2.3:-46851440 MS.gene037125:CDS
GGCTTTGTTTGAGCACTTGA+TGG 0.405445 2.3:+46851363 None:intergenic
TATCAGAACTCTATCATTCA+AGG 0.405575 2.3:+46851020 None:intergenic
AAGCTTACTGTTCCAAATGA+AGG 0.410647 2.3:+46850499 None:intergenic
ACCAAGGAGAAACCTTCATT+TGG 0.419164 2.3:-46850511 MS.gene037125:CDS
TCCTGCTCGTAGGTCCTTCA+AGG 0.426073 2.3:-46852613 MS.gene037125:CDS
GAATGATAGAGTTCTGATAA+AGG 0.428615 2.3:-46851016 MS.gene037125:intron
TTGAAAGATGATGACATTGT+TGG 0.431771 2.3:-46851078 MS.gene037125:CDS
GAATGAAACTGAACACTTGA+TGG 0.432793 2.3:+46852660 None:intergenic
CCTTCACACTAATTTCAACT+TGG 0.433049 2.3:+46851289 None:intergenic
CCTTGATATCATCAGTTTCA+AGG 0.440736 2.3:+46851052 None:intergenic
ATACGCTGGTAATGACTTCA+AGG 0.441855 2.3:-46850086 MS.gene037125:CDS
CAGGTGGTAGCAGTTGGTCC+CGG 0.442169 2.3:-46850178 MS.gene037125:CDS
TGGTCCCGGGCTTGTGGATG+AGG 0.443053 2.3:-46850164 MS.gene037125:CDS
GCCTTCCTCATCCACAAGCC+CGG 0.445614 2.3:+46850159 None:intergenic
TCCAAATGAAGGTTTCTCCT+TGG 0.449870 2.3:+46850510 None:intergenic
CCTTGAAACTGATGATATCA+AGG 0.481354 2.3:-46851052 MS.gene037125:CDS
TTTGACAATCAAAGCCTTGA+AGG 0.489756 2.3:+46852599 None:intergenic
TACACTGCAATCAAGCCTTT+GGG 0.491403 2.3:-46851447 MS.gene037125:CDS
ATATATGCTGCAGATTGAAA+AGG 0.493775 2.3:-46850575 MS.gene037125:intron
AAACCTTTGACTGTTACTCC+TGG 0.503322 2.3:-46850130 MS.gene037125:CDS
TCTGCTCGACATGTTAGGAT+TGG 0.504109 2.3:-46852639 MS.gene037125:CDS
CTTGAGGAGTTCTGATGTCA+TGG 0.516147 2.3:-46850038 MS.gene037125:CDS
AGGTGGTAGCAGTTGGTCCC+GGG 0.520936 2.3:-46850177 MS.gene037125:CDS
GCCTTGAAGGACCTACGAGC+AGG 0.526587 2.3:+46852612 None:intergenic
AGCAGTTGGTCCCGGGCTTG+TGG 0.527000 2.3:-46850170 MS.gene037125:CDS
GAGGTGGTTGCCGTTGGAGA+AGG 0.528875 2.3:-46851330 MS.gene037125:CDS
GGTACTGAGGTGGACTTCAA+TGG 0.535132 2.3:-46851117 MS.gene037125:CDS
ATCAGAACTCTATCATTCAA+GGG 0.538758 2.3:+46851021 None:intergenic
GAATAGACAACTTGTGCACC+TGG 0.546890 2.3:+46851150 None:intergenic
GTTGTCTATTCAAAATATGC+TGG 0.547496 2.3:-46851138 MS.gene037125:CDS
GAGTACAGAACTGTGTTCCC+AGG 0.548022 2.3:+46850112 None:intergenic
TTCCCAGGAGTAACAGTCAA+AGG 0.549921 2.3:+46850127 None:intergenic
CCCGGGCTTGTGGATGAGGA+AGG 0.557286 2.3:-46850160 MS.gene037125:CDS
GGAGGTGAGGTGGTTGCCGT+TGG 0.560930 2.3:-46851336 MS.gene037125:CDS
AACCTTTGACTGTTACTCCT+GGG 0.561302 2.3:-46850129 MS.gene037125:CDS
CCAAGTTGAAATTAGTGTGA+AGG 0.567424 2.3:-46851289 MS.gene037125:intron
AAGTGTCTTTCCTTCTCCAA+CGG 0.569767 2.3:+46851320 None:intergenic
CCTTCCTCATCCACAAGCCC+GGG 0.573609 2.3:+46850160 None:intergenic
GTTGGAGAAGGAAAGACACT+TGG 0.579860 2.3:-46851318 MS.gene037125:CDS
TTCAAAATATGCTGGTACTG+AGG 0.581439 2.3:-46851130 MS.gene037125:CDS
AGGCGGTTTGTTTCTTACAG+AGG 0.589539 2.3:-46850536 MS.gene037125:CDS
ATGTCACAGGTGGTAGCAGT+TGG 0.591495 2.3:-46850184 MS.gene037125:intron
CAGAAGAGAAGACACAGAGT+GGG 0.596412 2.3:-46851395 MS.gene037125:CDS
TGATGGTCGAAGTCCTTCAA+AGG 0.597517 2.3:+46852677 None:intergenic
AAAATATGCTGGTACTGAGG+TGG 0.601018 2.3:-46851127 MS.gene037125:CDS
AATGACTTCAAGGGAAAAGA+CGG 0.606929 2.3:-46850076 MS.gene037125:CDS
ATAAGTACCCTGTCACCCAA+AGG 0.609358 2.3:+46851432 None:intergenic
AATCAAGCCTTTGGGTGACA+GGG 0.609714 2.3:-46851439 MS.gene037125:CDS
GTTTCTTACAGAGGCAACCA+AGG 0.611857 2.3:-46850527 MS.gene037125:CDS
AACAAAGCCTCAAGGAGGTG+AGG 0.613391 2.3:-46851349 MS.gene037125:CDS
TATGCTGCAGATTGAAAAGG+CGG 0.624112 2.3:-46850572 MS.gene037125:intron
TACGCTGGTAATGACTTCAA+GGG 0.634589 2.3:-46850085 MS.gene037125:CDS
GCAGAAGAGAAGACACAGAG+TGG 0.638010 2.3:-46851396 MS.gene037125:CDS
CATGACATCAGAACTCCTCA+AGG 0.650196 2.3:+46850039 None:intergenic
AGTGCTCAAACAAAGCCTCA+AGG 0.651229 2.3:-46851357 MS.gene037125:CDS
GGATTGGTAATCCTGCTCGT+AGG 0.652074 2.3:-46852623 MS.gene037125:CDS
TTGGAGAAGGAAAGACACTT+GGG 0.658187 2.3:-46851317 MS.gene037125:CDS
GCAACCACCTCACCTCCTTG+AGG 0.660430 2.3:+46851342 None:intergenic
AAAGCCTCAAGGAGGTGAGG+TGG 0.661356 2.3:-46851346 MS.gene037125:CDS
GTTCTGTACTCCAAATACGC+TGG 0.690424 2.3:-46850100 MS.gene037125:CDS
GCTCAAACAAAGCCTCAAGG+AGG 0.723993 2.3:-46851354 MS.gene037125:CDS
CAGCATCATCAATTTCAACG+AGG 0.726289 2.3:-46852710 MS.gene037125:CDS
AGAATGAAAATAAACCTTGG+GGG 0.751739 2.3:+46852560 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCATAAAATTGTTAAAAGA+CGG + chr2.3:46851244-46851263 None:intergenic 15.0%
!!! TGCTATTATAATGTTTTTTT+GGG - chr2.3:46850262-46850281 MS.gene037125:intron 15.0%
!!! TTCATTTTTTAATTTTGATC+TGG - chr2.3:46851821-46851840 MS.gene037125:intron 15.0%
!!! TTGCTATTATAATGTTTTTT+TGG - chr2.3:46850261-46850280 MS.gene037125:intron 15.0%
!! AAAAACATTGTTGTAATACT+TGG - chr2.3:46852546-46852565 MS.gene037125:intron 20.0%
!! AAAAGAATGAAAATAAACCT+TGG + chr2.3:46850199-46850218 None:intergenic 20.0%
!! AAAGAATGAAAATAAACCTT+GGG + chr2.3:46850198-46850217 None:intergenic 20.0%
!! AAATTGTGCATCAAAATTAA+AGG + chr2.3:46850934-46850953 None:intergenic 20.0%
!! AATTGTGCATCAAAATTAAA+GGG + chr2.3:46850933-46850952 None:intergenic 20.0%
!! GACAATTTGAAAAAGTAATT+CGG - chr2.3:46850711-46850730 MS.gene037125:intron 20.0%
!!! ATTTGAGTGTTATTGATAAT+TGG - chr2.3:46850333-46850352 MS.gene037125:intron 20.0%
! AAACGCATAATTGTTCTATT+TGG - chr2.3:46851194-46851213 MS.gene037125:intron 25.0%
! AAGAATGAAAATAAACCTTG+GGG + chr2.3:46850197-46850216 None:intergenic 25.0%
! AATTAACTTAAAAAAGCCTC+TGG + chr2.3:46851001-46851020 None:intergenic 25.0%
! ACTTATGTTACACAATTTAG+AGG + chr2.3:46850517-46850536 None:intergenic 25.0%
! AGTGATGAAAACAAAATCAA+CGG - chr2.3:46851879-46851898 MS.gene037125:intron 25.0%
! ATCGTTCTTTAATTCTTCTT+GGG - chr2.3:46851525-46851544 MS.gene037125:intron 25.0%
! GAACAATATTCATGAGAAAT+AGG + chr2.3:46852506-46852525 None:intergenic 25.0%
! TGCTACATTTAAATCTTAAG+TGG + chr2.3:46852329-46852348 None:intergenic 25.0%
! TTAAATCTTAAGTGGATGTT+GGG + chr2.3:46852321-46852340 None:intergenic 25.0%
! TTTAAATCTTAAGTGGATGT+TGG + chr2.3:46852322-46852341 None:intergenic 25.0%
! TTTACTTAGGCATATGTTTA+AGG - chr2.3:46850869-46850888 MS.gene037125:intron 25.0%
!! AACATGTTTTCAAACAAAGA+AGG + chr2.3:46852290-46852309 None:intergenic 25.0%
!! AGTTTTGCTTATATTCTTGT+TGG - chr2.3:46851774-46851793 MS.gene037125:intron 25.0%
!! ATATAAGCAAAACTCTAAAG+AGG + chr2.3:46851768-46851787 None:intergenic 25.0%
!! ATTTGAGTAAACAACCATTT+TGG - chr2.3:46850441-46850460 MS.gene037125:intron 25.0%
!! CAGGGTACTTATAAAAATTA+AGG - chr2.3:46851332-46851351 MS.gene037125:CDS 25.0%
!! TGCAACTTTATTTCTCATAT+AGG - chr2.3:46852076-46852095 MS.gene037125:intron 25.0%
!! TTTATTTCTCATATAGGAGT+AGG - chr2.3:46852082-46852101 MS.gene037125:intron 25.0%
!! TTTGAGTAAACAACCATTTT+GGG - chr2.3:46850442-46850461 MS.gene037125:intron 25.0%
!!! AAGTTGTTAATTTGCTTAGA+AGG - chr2.3:46850359-46850378 MS.gene037125:intron 25.0%
!!! ACAATTTTGATGTTGAATGT+GGG - chr2.3:46850897-46850916 MS.gene037125:intron 25.0%
!!! ATTGAGTTCTGAAAAGATAA+TGG - chr2.3:46850828-46850847 MS.gene037125:intron 25.0%
!!! TACAATTTTGATGTTGAATG+TGG - chr2.3:46850896-46850915 MS.gene037125:intron 25.0%
AAGTTGCACAAAATATGACA+TGG + chr2.3:46852064-46852083 None:intergenic 30.0%
AATAATCAATGTCACTCGTT+AGG - chr2.3:46852424-46852443 MS.gene037125:intron 30.0%
AATTAAAGAACGATCATCGA+AGG + chr2.3:46851519-46851538 None:intergenic 30.0%
AGAATGAAAATAAACCTTGG+GGG + chr2.3:46850196-46850215 None:intergenic 30.0%
AGTTGCACAAAATATGACAT+GGG + chr2.3:46852063-46852082 None:intergenic 30.0%
ATATATGCTGCAGATTGAAA+AGG - chr2.3:46852178-46852197 MS.gene037125:intron 30.0%
ATCAGAACTCTATCATTCAA+GGG + chr2.3:46851735-46851754 None:intergenic 30.0%
ATTGTTAAAAGACGGAACTT+TGG + chr2.3:46851236-46851255 None:intergenic 30.0%
CGAAATTGAAACACTGAATA+TGG - chr2.3:46851849-46851868 MS.gene037125:intron 30.0%
CGGATCATAATTTCAGAAAA+TGG + chr2.3:46850592-46850611 None:intergenic 30.0%
GATCGTTCTTTAATTCTTCT+TGG - chr2.3:46851524-46851543 MS.gene037125:intron 30.0%
GATGAAGTAGCAATTTACTT+AGG - chr2.3:46850856-46850875 MS.gene037125:intron 30.0%
GCATAATTCAGTGTAATCAT+AGG + chr2.3:46850570-46850589 None:intergenic 30.0%
GCTGTTTATTTATTAACCAG+AGG - chr2.3:46850982-46851001 MS.gene037125:intron 30.0%
GTTGTCTATTCAAAATATGC+TGG - chr2.3:46851615-46851634 MS.gene037125:intron 30.0%
TATCAGAACTCTATCATTCA+AGG + chr2.3:46851736-46851755 None:intergenic 30.0%
TCTTCTTGATTATGCATTTG+TGG - chr2.3:46850394-46850413 MS.gene037125:intron 30.0%
TGAAATTTCAAGACCCAAAA+TGG + chr2.3:46850458-46850477 None:intergenic 30.0%
TTAATTCTTCTTGGGAAGAA+GGG - chr2.3:46851533-46851552 MS.gene037125:intron 30.0%
TTGAAAGATGATGACATTGT+TGG - chr2.3:46851675-46851694 MS.gene037125:intron 30.0%
TTTAATTCTTCTTGGGAAGA+AGG - chr2.3:46851532-46851551 MS.gene037125:intron 30.0%
TTTCGCAAATTCAAGGTTAT+TGG - chr2.3:46850736-46850755 MS.gene037125:intron 30.0%
! AAAGAGTAAACCACCATTTT+GGG + chr2.3:46850783-46850802 None:intergenic 30.0%
! GAATGATAGAGTTCTGATAA+AGG - chr2.3:46851737-46851756 MS.gene037125:intron 30.0%
! TCACATTGACTATAGAGATA+AGG + chr2.3:46852392-46852411 None:intergenic 30.0%
!! AGTTCTGAAAAGATAATGGT+GGG - chr2.3:46850832-46850851 MS.gene037125:intron 30.0%
!! TTAATTTGCTTAGAAGGAAG+TGG - chr2.3:46850365-46850384 MS.gene037125:intron 30.0%
!!! TGAGATGTCTTACTTTTTAG+AGG - chr2.3:46851976-46851995 MS.gene037125:intron 30.0%
AAGCTTACTGTTCCAAATGA+AGG + chr2.3:46852257-46852276 None:intergenic 35.0%
AATGACTTCAAGGGAAAAGA+CGG - chr2.3:46852677-46852696 MS.gene037125:CDS 35.0%
AATTGTTAACCCACTTGTGT+TGG - chr2.3:46851052-46851071 MS.gene037125:CDS 35.0%
AGACCTCAACAAAACAAAAG+AGG + chr2.3:46852125-46852144 None:intergenic 35.0%
CACGCATGGATAACAATTTA+TGG - chr2.3:46851913-46851932 MS.gene037125:intron 35.0%
CCTTCACACTAATTTCAACT+TGG + chr2.3:46851467-46851486 None:intergenic 35.0%
CCTTGAAACTGATGATATCA+AGG - chr2.3:46851701-46851720 MS.gene037125:intron 35.0%
CCTTGATATCATCAGTTTCA+AGG + chr2.3:46851704-46851723 None:intergenic 35.0%
CGCATAATTGTTCTATTTGG+AGG - chr2.3:46851197-46851216 MS.gene037125:intron 35.0%
GAATGAAACTGAACACTTGA+TGG + chr2.3:46850096-46850115 None:intergenic 35.0%
GCATATATTAAACCAGTCAG+TGG + chr2.3:46852166-46852185 None:intergenic 35.0%
GTTTCATCTCCGTATAATAG+AGG + chr2.3:46850651-46850670 None:intergenic 35.0%
TAATCGTGCTGAACATATTC+TGG + chr2.3:46852465-46852484 None:intergenic 35.0%
TACAATCTCATGACCCAAAA+TGG - chr2.3:46850767-46850786 MS.gene037125:intron 35.0%
TATTCTTGTTGGATCCAAGT+TGG - chr2.3:46851785-46851804 MS.gene037125:intron 35.0%
TGCAAATTATCTGATCGTCA+AGG - chr2.3:46852022-46852041 MS.gene037125:intron 35.0%
TTCAAAATATGCTGGTACTG+AGG - chr2.3:46851623-46851642 MS.gene037125:intron 35.0%
TTCGGTATTTCGCAAATTCA+AGG - chr2.3:46850729-46850748 MS.gene037125:intron 35.0%
TTGTAATACTTGGATGTCAC+AGG - chr2.3:46852556-46852575 MS.gene037125:intron 35.0%
TTTGACAATCAAAGCCTTGA+AGG + chr2.3:46850157-46850176 None:intergenic 35.0%
! CAAAGAGTAAACCACCATTT+TGG + chr2.3:46850784-46850803 None:intergenic 35.0%
! CCAAGTTGAAATTAGTGTGA+AGG - chr2.3:46851464-46851483 MS.gene037125:intron 35.0%
! GATGAAACTCTTATTTGAGG+CGG - chr2.3:46850663-46850682 MS.gene037125:intron 35.0%
! GGAGATGAAACTCTTATTTG+AGG - chr2.3:46850660-46850679 MS.gene037125:intron 35.0%
!! GAGTTCTGAAAAGATAATGG+TGG - chr2.3:46850831-46850850 MS.gene037125:intron 35.0%
!! GTTTTGAGTACATTACCTTG+AGG - chr2.3:46852699-46852718 MS.gene037125:CDS 35.0%
AAACCTTTGACTGTTACTCC+TGG - chr2.3:46852623-46852642 MS.gene037125:CDS 40.0%
AACCTTTGACTGTTACTCCT+GGG - chr2.3:46852624-46852643 MS.gene037125:CDS 40.0%
AAGGCGGAAGAAAAAACTTC+AGG - chr2.3:46852197-46852216 MS.gene037125:intron 40.0%
AAGTGTCTTTCCTTCTCCAA+CGG + chr2.3:46851436-46851455 None:intergenic 40.0%
AATCTCATGACCCAAAATGG+TGG - chr2.3:46850770-46850789 MS.gene037125:intron 40.0%
ACCAAGGAGAAACCTTCATT+TGG - chr2.3:46852242-46852261 MS.gene037125:intron 40.0%
AGTAGGATTCAAAGACGCTA+TGG - chr2.3:46852099-46852118 MS.gene037125:intron 40.0%
CAGCATCATCAATTTCAACG+AGG - chr2.3:46850043-46850062 MS.gene037125:CDS 40.0%
GAAGTCATTACCAGCGTATT+TGG + chr2.3:46852666-46852685 None:intergenic 40.0%
GTGATGTTTGTGTAGCAGTT+TGG + chr2.3:46851030-46851049 None:intergenic 40.0%
TAATACTTGGATGTCACAGG+TGG - chr2.3:46852559-46852578 MS.gene037125:intron 40.0%
TACACTGCAATCAAGCCTTT+GGG - chr2.3:46851306-46851325 MS.gene037125:CDS 40.0%
TATGCTGCAGATTGAAAAGG+CGG - chr2.3:46852181-46852200 MS.gene037125:intron 40.0%
TCATCTCCGTATAATAGAGG+TGG + chr2.3:46850648-46850667 None:intergenic 40.0%
TCCAAATGAAGGTTTCTCCT+TGG + chr2.3:46852246-46852265 None:intergenic 40.0%
TTCACGCCACCTCTATTATA+CGG - chr2.3:46850639-46850658 MS.gene037125:intron 40.0%
TTCATTCTGCTCGACATGTT+AGG - chr2.3:46850109-46850128 MS.gene037125:CDS 40.0%
TTGGAGAAGGAAAGACACTT+GGG - chr2.3:46851436-46851455 MS.gene037125:CDS 40.0%
! AAAATATGCTGGTACTGAGG+TGG - chr2.3:46851626-46851645 MS.gene037125:intron 40.0%
! ATACGCTGGTAATGACTTCA+AGG - chr2.3:46852667-46852686 MS.gene037125:CDS 40.0%
! GTCTCAGATTCGATTTTTCC+CGG - chr2.3:46851119-46851138 MS.gene037125:CDS 40.0%
! TACGCTGGTAATGACTTCAA+GGG - chr2.3:46852668-46852687 MS.gene037125:CDS 40.0%
! TCAAACAAAGAAGGTACAGC+AGG + chr2.3:46852281-46852300 None:intergenic 40.0%
!! ATTTTTCCCGGTGCCAATTT+CGG - chr2.3:46851131-46851150 MS.gene037125:CDS 40.0%
!!! TGGCCTCTTTTGTTTTGTTG+AGG - chr2.3:46852119-46852138 MS.gene037125:intron 40.0%
!!! TGTGTTTTGTTTGTACAGCC+AGG - chr2.3:46851585-46851604 MS.gene037125:intron 40.0%
AATCAAGCCTTTGGGTGACA+GGG - chr2.3:46851314-46851333 MS.gene037125:CDS 45.0%
AGGAGCTTTGCATCCTTTGA+AGG - chr2.3:46850063-46850082 MS.gene037125:CDS 45.0%
AGTGCTCAAACAAAGCCTCA+AGG - chr2.3:46851396-46851415 MS.gene037125:CDS 45.0%
ATAAGTACCCTGTCACCCAA+AGG + chr2.3:46851324-46851343 None:intergenic 45.0%
ATCACCAGACCAACACAAGT+GGG + chr2.3:46851064-46851083 None:intergenic 45.0%
CAGAAGAGAAGACACAGAGT+GGG - chr2.3:46851358-46851377 MS.gene037125:CDS 45.0%
CATGACATCAGAACTCCTCA+AGG + chr2.3:46852717-46852736 None:intergenic 45.0%
CTCAACTAGTCCACCGAAAT+TGG + chr2.3:46851147-46851166 None:intergenic 45.0%
CTTGATTGCAGTGTACTGCA+CGG + chr2.3:46851301-46851320 None:intergenic 45.0%
GAATAGACAACTTGTGCACC+TGG + chr2.3:46851606-46851625 None:intergenic 45.0%
GCGGAAGAAAAAACTTCAGG+CGG - chr2.3:46852200-46852219 MS.gene037125:intron 45.0%
GTACACTGCAATCAAGCCTT+TGG - chr2.3:46851305-46851324 MS.gene037125:CDS 45.0%
GTGAAGCACAGACACAAACA+CGG + chr2.3:46850624-46850643 None:intergenic 45.0%
GTTCTGTACTCCAAATACGC+TGG - chr2.3:46852653-46852672 MS.gene037125:CDS 45.0%
GTTGGAGAAGGAAAGACACT+TGG - chr2.3:46851435-46851454 MS.gene037125:CDS 45.0%
GTTTCTTACAGAGGCAACCA+AGG - chr2.3:46852226-46852245 MS.gene037125:intron 45.0%
TCTGCTCGACATGTTAGGAT+TGG - chr2.3:46850114-46850133 MS.gene037125:CDS 45.0%
TGATGGTCGAAGTCCTTCAA+AGG + chr2.3:46850079-46850098 None:intergenic 45.0%
TTCCCAGGAGTAACAGTCAA+AGG + chr2.3:46852629-46852648 None:intergenic 45.0%
TTGATTGCAGTGTACTGCAC+GGG + chr2.3:46851300-46851319 None:intergenic 45.0%
! ACTCTTATTTGAGGCGGTGA+AGG - chr2.3:46850669-46850688 MS.gene037125:intron 45.0%
! AGGCGGTTTGTTTCTTACAG+AGG - chr2.3:46852217-46852236 MS.gene037125:intron 45.0%
! ATCGAATCTGAGACCTTGAG+AGG + chr2.3:46851113-46851132 None:intergenic 45.0%
! CTCTTATTTGAGGCGGTGAA+GGG - chr2.3:46850670-46850689 MS.gene037125:intron 45.0%
! CTTGAGGAGTTCTGATGTCA+TGG - chr2.3:46852715-46852734 MS.gene037125:CDS 45.0%
! GCTTTTAGATAGCCACTGAC+TGG - chr2.3:46852151-46852170 MS.gene037125:intron 45.0%
! TCTTATTTGAGGCGGTGAAG+GGG - chr2.3:46850671-46850690 MS.gene037125:intron 45.0%
! TGTAATCATAGGCGTCGTGT+CGG + chr2.3:46850559-46850578 None:intergenic 45.0%
! TTAACCCACTTGTGTTGGTC+TGG - chr2.3:46851057-46851076 MS.gene037125:CDS 45.0%
! TTGTGTTGGTCTGGTGATGT+TGG - chr2.3:46851066-46851085 MS.gene037125:CDS 45.0%
!! GGCTTTGTTTGAGCACTTGA+TGG + chr2.3:46851393-46851412 None:intergenic 45.0%
!! TCAAATTAAATTAAATAAAA+TGG + chr2.3:46850319-46850338 None:intergenic 5.0%
AACAAAGCCTCAAGGAGGTG+AGG - chr2.3:46851404-46851423 MS.gene037125:CDS 50.0%
ATGTCACAGGTGGTAGCAGT+TGG - chr2.3:46852569-46852588 MS.gene037125:intron 50.0%
CAATCAAGCCTTTGGGTGAC+AGG - chr2.3:46851313-46851332 MS.gene037125:CDS 50.0%
CACAAACACGGACACAGACA+CGG + chr2.3:46850612-46850631 None:intergenic 50.0%
CATCACCAGACCAACACAAG+TGG + chr2.3:46851065-46851084 None:intergenic 50.0%
GAGTACAGAACTGTGTTCCC+AGG + chr2.3:46852644-46852663 None:intergenic 50.0%
GCAGAAGAGAAGACACAGAG+TGG - chr2.3:46851357-46851376 MS.gene037125:CDS 50.0%
GCTCAAACAAAGCCTCAAGG+AGG - chr2.3:46851399-46851418 MS.gene037125:CDS 50.0%
TAGTCCACCGAAATTGGCAC+CGG + chr2.3:46851141-46851160 None:intergenic 50.0%
! CGGTTGATATTGCACACGCA+TGG - chr2.3:46851899-46851918 MS.gene037125:intron 50.0%
! GGATTGGTAATCCTGCTCGT+AGG - chr2.3:46850130-46850149 MS.gene037125:CDS 50.0%
! GGTACTGAGGTGGACTTCAA+TGG - chr2.3:46851636-46851655 MS.gene037125:intron 50.0%
! GTTGGATCCAAGTTGGCGAA+GGG - chr2.3:46851792-46851811 MS.gene037125:intron 50.0%
! TGTTGGATCCAAGTTGGCGA+AGG - chr2.3:46851791-46851810 MS.gene037125:intron 50.0%
! TTGGTCTGGTGATGTTGGCT+TGG - chr2.3:46851071-46851090 MS.gene037125:CDS 50.0%
!! TGGTCTGGTGATGTTGGCTT+GGG - chr2.3:46851072-46851091 MS.gene037125:CDS 50.0%
AAAGCCTCAAGGAGGTGAGG+TGG - chr2.3:46851407-46851426 MS.gene037125:CDS 55.0%
AACCTTGGGGGCAACAACAG+TGG + chr2.3:46850184-46850203 None:intergenic 55.0%
AGTCCACCGAAATTGGCACC+GGG + chr2.3:46851140-46851159 None:intergenic 55.0%
CTTGGAGTGTGCTCCTCTCA+AGG - chr2.3:46851097-46851116 MS.gene037125:CDS 55.0%
TCCTGCTCGTAGGTCCTTCA+AGG - chr2.3:46850140-46850159 MS.gene037125:CDS 55.0%
! CTTGAGAGGAGCACACTCCA+AGG + chr2.3:46851099-46851118 None:intergenic 55.0%
! TTTCCCGGTGCCAATTTCGG+TGG - chr2.3:46851134-46851153 MS.gene037125:CDS 55.0%
!! GTGATGTTGGCTTGGGACCT+TGG - chr2.3:46851079-46851098 MS.gene037125:CDS 55.0%
AGGTGGTAGCAGTTGGTCCC+GGG - chr2.3:46852576-46852595 MS.gene037125:CDS 60.0%
CAGGTGGTAGCAGTTGGTCC+CGG - chr2.3:46852575-46852594 MS.gene037125:CDS 60.0%
CCTTCCTCATCCACAAGCCC+GGG + chr2.3:46852596-46852615 None:intergenic 60.0%
CTTGGGGGCAACAACAGTGG+CGG + chr2.3:46850181-46850200 None:intergenic 60.0%
GAGGTGGTTGCCGTTGGAGA+AGG - chr2.3:46851423-46851442 MS.gene037125:CDS 60.0%
GCAACCACCTCACCTCCTTG+AGG + chr2.3:46851414-46851433 None:intergenic 60.0%
GCCTTCCTCATCCACAAGCC+CGG + chr2.3:46852597-46852616 None:intergenic 60.0%
GCCTTGAAGGACCTACGAGC+AGG + chr2.3:46850144-46850163 None:intergenic 60.0%
! GGATCCAAGTTGGCGAAGGG+CGG - chr2.3:46851795-46851814 MS.gene037125:intron 60.0%
ACCACCGCCCTTCGCCAACT+TGG + chr2.3:46851802-46851821 None:intergenic 65.0%
AGCAGTTGGTCCCGGGCTTG+TGG - chr2.3:46852583-46852602 MS.gene037125:CDS 65.0%
CCCGGGCTTGTGGATGAGGA+AGG - chr2.3:46852593-46852612 MS.gene037125:CDS 65.0%
CGCCACTGTTGTTGCCCCCA+AGG - chr2.3:46850179-46850198 MS.gene037125:intron 65.0%
GGAGGTGAGGTGGTTGCCGT+TGG - chr2.3:46851417-46851436 MS.gene037125:CDS 65.0%
TGGTCCCGGGCTTGTGGATG+AGG - chr2.3:46852589-46852608 MS.gene037125:CDS 65.0%
! AGGCGTCGTGTCGGTGCTTC+AGG + chr2.3:46850550-46850569 None:intergenic 65.0%
! TCCAAGTTGGCGAAGGGCGG+TGG - chr2.3:46851798-46851817 MS.gene037125:intron 65.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 46850024 46852751 46850024 ID=MS.gene037125
chr2.3 mRNA 46850024 46852751 46850024 ID=MS.gene037125.t1;Parent=MS.gene037125
chr2.3 exon 46852575 46852751 46852575 ID=MS.gene037125.t1.exon1;Parent=MS.gene037125.t1
chr2.3 CDS 46852575 46852751 46852575 ID=cds.MS.gene037125.t1;Parent=MS.gene037125.t1
chr2.3 exon 46851290 46851469 46851290 ID=MS.gene037125.t1.exon2;Parent=MS.gene037125.t1
chr2.3 CDS 46851290 46851469 46851290 ID=cds.MS.gene037125.t1;Parent=MS.gene037125.t1
chr2.3 exon 46851017 46851172 46851017 ID=MS.gene037125.t1.exon3;Parent=MS.gene037125.t1
chr2.3 CDS 46851017 46851172 46851017 ID=cds.MS.gene037125.t1;Parent=MS.gene037125.t1
chr2.3 exon 46850507 46850584 46850507 ID=MS.gene037125.t1.exon4;Parent=MS.gene037125.t1
chr2.3 CDS 46850507 46850584 46850507 ID=cds.MS.gene037125.t1;Parent=MS.gene037125.t1
chr2.3 exon 46850024 46850197 46850024 ID=MS.gene037125.t1.exon5;Parent=MS.gene037125.t1
chr2.3 CDS 46850024 46850197 46850024 ID=cds.MS.gene037125.t1;Parent=MS.gene037125.t1
Gene Sequence

>MS.gene037125

ATGGCTTCTTCTCAGTTGACAGCATCATCAATTTCAACGAGGAGCTTTGCATCCTTTGAAGGACTTCGACCATCAAGTGTTCAGTTTCATTCTGCTCGACATGTTAGGATTGGTAATCCTGCTCGTAGGTCCTTCAAGGCTTTGATTGTCAAAGCCGCCACTGTTGTTGCCCCCAAGGTTTATTTTCATTCTTTTTTGTTTTAATTTTATATAAATTAAGAATTGAAAGTAGTGTTATTGCTATTATAATGTTTTTTTGGGCTAATTTTATAAAGAATTGTGTAGTTTTATACCATTTTATTTAATTTAATTTGAGTGTTATTGATAATTGGAGAAAGTTGTTAATTTGCTTAGAAGGAAGTGGCGAAATTCTTCTTGATTATGCATTTGTGGAAGTGTTAAGTTTTATCATTTGTTATTTGAGTAAACAACCATTTTGGGTCTTGAAATTTCAAATTGAGACTACAAATTTATGAATTATAAAATTGCTCCTCTAAATTGTGTAACATAAGTTGAAATACTTCCTGAAGCACCGACACGACGCCTATGATTACACTGAATTATGCCATTTTCTGAAATTATGATCCGTGTCTGTGTCCGTGTTTGTGTCTGTGCTTCACGCCACCTCTATTATACGGAGATGAAACTCTTATTTGAGGCGGTGAAGGGGAATTTTGATTGACGTTAGACAATTTGAAAAAGTAATTCGGTATTTCGCAAATTCAAGGTTATTGGAAGACACTTACAATCTCATGACCCAAAATGGTGGTTTACTCTTTGTTATTTTGCTTAGAGAATGTTTGAATTGAGTTCTGAAAAGATAATGGTGGGTGATGAAGTAGCAATTTACTTAGGCATATGTTTAAGGACAGTACAATTTTGATGTTGAATGTGGGTATCTTCATTCCCTTTAATTTTGATGCACAATTTCATTCTGATTTTTCTAAAAATTTGTCTTGCTGTTTATTTATTAACCAGAGGCTTTTTTAAGTTAATTATTCAACCAAACTGCTACACAAACATCACATAATTGTTAACCCACTTGTGTTGGTCTGGTGATGTTGGCTTGGGACCTTGGAGTGTGCTCCTCTCAAGGTCTCAGATTCGATTTTTCCCGGTGCCAATTTCGGTGGACTAGTTGAGCTTCTTCAAAAAAAAAAAAAAAAAAAAAAACGCATAATTGTTCTATTTGGAGGACTGAGATAGTTTCCAAAGTTCCGTCTTTTAACAATTTTATGATTCAACGCTACATGCATCTAAATGTTAGTTTTATCCCGTGCAGTACACTGCAATCAAGCCTTTGGGTGACAGGGTACTTATAAAAATTAAGGAAGCAGAAGAGAAGACACAGAGTGGGATTTTGCTTCCATCAAGTGCTCAAACAAAGCCTCAAGGAGGTGAGGTGGTTGCCGTTGGAGAAGGAAAGACACTTGGGAAGAACCAAGTTGAAATTAGTGTGAAGGTAATGTTTCTATTTTCTGATGTCATTAAACCTTCGATGATCGTTCTTTAATTCTTCTTGGGAAGAAGGGAGTTTTCTCTGTAAGCTTAATTATTGTGATGTGTTTTGTTTGTACAGCCAGGTGCACAAGTTGTCTATTCAAAATATGCTGGTACTGAGGTGGACTTCAATGGTGAAAAGCATCTTCTTTTGAAAGATGATGACATTGTTGGTATCCTTGAAACTGATGATATCAAGGATCTTAAACCCTTGAATGATAGAGTTCTGATAAAGGTAATTCCTCTTTAGAGTTTTGCTTATATTCTTGTTGGATCCAAGTTGGCGAAGGGCGGTGGTTCATTTTTTAATTTTGATCTGGTTTCTCGAAATTGAAACACTGAATATGGATAAGTGAGTGATGAAAACAAAATCAACGGTTGATATTGCACACGCATGGATAACAATTTATGGATTTGCAAAAATATCAGTTGTTGATTTTGTCATCAGTATTTGAGATGTCTTACTTTTTAGAGGATTTAAATCTTTTAAATCATATTTGCAAATTATCTGATCGTCAAGGAATATGTTGCTTTTTCCCATGTCATATTTTGTGCAACTTTATTTCTCATATAGGAGTAGGATTCAAAGACGCTATGGCCTCTTTTGTTTTGTTGAGGTCTGTGATAGCTTTTAGATAGCCACTGACTGGTTTAATATATGCTGCAGATTGAAAAGGCGGAAGAAAAAACTTCAGGCGGTTTGTTTCTTACAGAGGCAACCAAGGAGAAACCTTCATTTGGAACAGTAAGCTTTCCTGCTGTACCTTCTTTGTTTGAAAACATGTTATTGTTTACCCAACATCCACTTAAGATTTAAATGTAGCACAATCTCACAAAGTCGAGCATTGTAAATTATATGTTTAAGCCTTATCTCTATAGTCAATGTGAGACTTGAGTGTTAATAATCAATGTCACTCGTTAGGAAATTGCTTGTTTTGCCAGAATATGTTCAGCACGATTAATTGACAATTGACATTATCCTATTTCTCATGAATATTGTTCGATCAATGATGCATTGTTTGAAAAACATTGTTGTAATACTTGGATGTCACAGGTGGTAGCAGTTGGTCCCGGGCTTGTGGATGAGGAAGGCAATAGAAAACCTTTGACTGTTACTCCTGGGAACACAGTTCTGTACTCCAAATACGCTGGTAATGACTTCAAGGGAAAAGACGGTTTTGAGTACATTACCTTGAGGAGTTCTGATGTCATGGCTGTACTCTCTTAG
Protein sequence

>MS.gene037125.t1

MASSQLTASSISTRSFASFEGLRPSSVQFHSARHVRIGNPARRSFKALIVKAATVVAPKYTAIKPLGDRVLIKIKEAEEKTQSGILLPSSAQTKPQGGEVVAVGEGKTLGKNQVEISVKPGAQVVYSKYAGTEVDFNGEKHLLLKDDDIVGILETDDIKDLKPLNDRVLIKIEKAEEKTSGGLFLTEATKEKPSFGTVVAVGPGLVDEEGNRKPLTVTPGNTVLYSKYAGNDFKGKDGFEYITLRSSDVMAVLS