AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene038024

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene038024.t1 MTR_3g073070 88.809 277 29 1 1 277 1 275 4.52e-170 471
MS.gene038024.t1 MTR_1g069215 96.029 277 11 0 1 277 1 277 1.12e-166 462
MS.gene038024.t1 MTR_3g073070 86.923 260 32 1 1 260 1 258 2.45e-162 452
MS.gene038024.t1 MTR_2g005900 41.053 95 50 3 175 266 58 149 4.27e-13 67.4
MS.gene038024.t1 MTR_2g036690 47.761 67 33 1 200 266 103 167 1.44e-12 65.5
MS.gene038024.t1 MTR_2g036690 47.761 67 33 1 200 266 103 167 2.41e-12 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene038024.t1 AT3G20970 82.212 208 37 0 68 275 72 279 2.07e-127 363
MS.gene038024.t1 AT1G51390 78.082 219 44 2 50 268 53 267 2.42e-124 355
MS.gene038024.t1 AT3G20970 82.667 150 26 0 68 217 72 221 2.35e-89 265
MS.gene038024.t1 AT5G49940 46.269 67 34 1 200 266 97 161 2.56e-13 67.4
MS.gene038024.t1 AT4G25910 47.761 67 33 1 200 266 96 160 5.45e-13 67.4
MS.gene038024.t1 AT5G49940 46.269 67 34 1 200 266 97 161 5.54e-13 67.4

Find 66 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAATCTTTGCTGCTATTA+TGG 0.182790 1.1:+50809298 MS.gene038024:CDS
TGCGATGATCAAGGAACTTT+TGG 0.229879 1.1:+50809606 MS.gene038024:CDS
CTCCTTTGCCCGGTGGAAAA+TGG 0.230244 1.1:-50808966 None:intergenic
TCAGGTGAACCACTCTTTCT+AGG 0.265718 1.1:+50809332 MS.gene038024:CDS
ATTATGGATTTCTACTCTTC+AGG 0.292022 1.1:+50809314 MS.gene038024:CDS
CCACGATGCATCTTCCGATT+TGG 0.310465 1.1:-50809261 None:intergenic
CAGCAAAGATTTCAGGCTTA+AGG 0.326720 1.1:-50809289 None:intergenic
GTCTTTGGAAGCGGCAGCTT+GGG 0.330417 1.1:-50809357 None:intergenic
ATAATAGCAGCAAAGATTTC+AGG 0.354714 1.1:-50809296 None:intergenic
ATCGTGGATTGCTGTGTCTT+TGG 0.387795 1.1:-50809372 None:intergenic
CAAAGGTGTGGAACAAGAAT+TGG 0.398435 1.1:+50810558 MS.gene038024:CDS
AACATAAGAGACTCTGGATT+TGG 0.402386 1.1:-50809017 None:intergenic
GATTTGGCGTGGACTGTGTT+TGG 0.406034 1.1:-50809001 None:intergenic
TTCAGAGTCACCGAAGAACT+TGG 0.410747 1.1:-50810067 None:intergenic
TTCATGGCGGAACGAGGGTT+AGG 0.411014 1.1:-50809083 None:intergenic
GGAACGAGGGTTAGGGAAAT+CGG 0.415132 1.1:-50809075 None:intergenic
TCTTCGGTGACTCTGAAATC+AGG 0.425848 1.1:+50810073 MS.gene038024:CDS
TGTGATTAGTCTCTGATTTG+AGG 0.428418 1.1:-50808833 None:intergenic
GTGATTAGTCTCTGATTTGA+GGG 0.430671 1.1:-50808832 None:intergenic
TTTAGCGAGAGGAGAATTCA+TGG 0.440507 1.1:-50809099 None:intergenic
TGTCTTTGGAAGCGGCAGCT+TGG 0.456320 1.1:-50809358 None:intergenic
GGTGGGGACATTGTGTATTG+TGG 0.468819 1.1:+50809661 MS.gene038024:CDS
TAGTGGCTGCCCAAGTTCTT+CGG 0.469327 1.1:+50810057 MS.gene038024:CDS
TCGTATCCGACCAACTGTAC+TGG 0.483872 1.1:+50809633 MS.gene038024:CDS
AGATGGAAATGGTGAGGCAG+AGG 0.494910 1.1:-50808943 None:intergenic
AGCAGCTTTAAGTGGACAAA+CGG 0.505572 1.1:+50810597 MS.gene038024:CDS
GAAGAAGAAGCAGCTTTAAG+TGG 0.530262 1.1:+50810589 MS.gene038024:CDS
TCATGGCGGAACGAGGGTTA+GGG 0.534084 1.1:-50809082 None:intergenic
GGATGAAACATAAGAGACTC+TGG 0.539372 1.1:-50809023 None:intergenic
ACATCCATGACAGGTTTACC+AGG 0.541119 1.1:-50809044 None:intergenic
TGAAACAGTTGCGATGATCA+AGG 0.541980 1.1:+50809597 MS.gene038024:CDS
GATTGCTGTGTCTTTGGAAG+CGG 0.547638 1.1:-50809366 None:intergenic
TTGCTGCATTTACAGGTCAA+AGG 0.551548 1.1:+50810541 MS.gene038024:intron
GTGGAAAATGGAGATGGAAA+TGG 0.563081 1.1:-50808954 None:intergenic
AAACATACTCCTCCTTTGCC+CGG 0.564888 1.1:-50808976 None:intergenic
TCAGAGTCACCGAAGAACTT+GGG 0.566646 1.1:-50810066 None:intergenic
GCATTGCGGTTGTAGTTGCA+AGG 0.571191 1.1:-50808909 None:intergenic
GAGTCTCTTATGTTTCATCC+TGG 0.574002 1.1:+50809026 MS.gene038024:CDS
TGCCCGGTGGAAAATGGAGA+TGG 0.578393 1.1:-50808960 None:intergenic
AACTGTACTGGATGATGGTG+GGG 0.579394 1.1:+50809645 MS.gene038024:CDS
GGTAAACCTGTCATGGATGT+TGG 0.587174 1.1:+50809047 MS.gene038024:CDS
TCATCCTGGTAAACCTGTCA+TGG 0.592000 1.1:+50809040 MS.gene038024:CDS
CAAATCGGAAGATGCATCGT+GGG 0.592355 1.1:+50809262 MS.gene038024:CDS
ATCGTCAAACTCAAAATGCA+AGG 0.595778 1.1:+50810028 MS.gene038024:CDS
CGACCAACTGTACTGGATGA+TGG 0.597616 1.1:+50809640 MS.gene038024:CDS
CAACTGTACTGGATGATGGT+GGG 0.603973 1.1:+50809644 MS.gene038024:CDS
CCACCATCATCCAGTACAGT+TGG 0.606773 1.1:-50809643 None:intergenic
GCGCTACCAACATCCATGAC+AGG 0.609183 1.1:-50809053 None:intergenic
GAGAATTCATGGCGGAACGA+GGG 0.618160 1.1:-50809088 None:intergenic
GGAGAATTCATGGCGGAACG+AGG 0.619141 1.1:-50809089 None:intergenic
GCTTGGGAGCCTAGAAAGAG+TGG 0.628813 1.1:-50809341 None:intergenic
GCATTTACAGGTCAAAGGTG+TGG 0.632082 1.1:+50810546 MS.gene038024:intron
CATCATCCAGTACAGTTGGT+CGG 0.636413 1.1:-50809639 None:intergenic
AAGAGACTCTGGATTTGGCG+TGG 0.639473 1.1:-50809012 None:intergenic
TAGTTGCAAGGTTGAAACGA+TGG 0.642224 1.1:-50808897 None:intergenic
CCAACTGTACTGGATGATGG+TGG 0.643205 1.1:+50809643 MS.gene038024:CDS
AAAATGCAAGGAGCATGTAG+TGG 0.643660 1.1:+50810040 MS.gene038024:CDS
CATACTCCTCCTTTGCCCGG+TGG 0.656092 1.1:-50808973 None:intergenic
CCAAATCGGAAGATGCATCG+TGG 0.660421 1.1:+50809261 MS.gene038024:CDS
TGTGAAGGATGACGGTGGTG+AGG 0.663047 1.1:+50808760 None:intergenic
TTAGGAAAACGATTACGACT+AGG 0.664261 1.1:+50808798 MS.gene038024:CDS
GGAACAAGAATTGGATGCTG+AGG 0.670849 1.1:+50810567 MS.gene038024:CDS
AAATGGAGATGGAAATGGTG+AGG 0.703537 1.1:-50808949 None:intergenic
GCTGATGCATTATGTACCTG+AGG 0.715793 1.1:+50810108 MS.gene038024:CDS
AGCGAGAGGAGAATTCATGG+CGG 0.794743 1.1:-50809096 None:intergenic
TGAACTGTGAAGGATGACGG+TGG 0.822277 1.1:+50808755 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTACTTAAATTTCATAAA+AGG + chr1.1:50809454-50809473 MS.gene038024:intron 10.0%
!!! TTTTATGAAATTTAAGTAAA+AGG - chr1.1:50809455-50809474 None:intergenic 10.0%
!! ATATAAAAAACAAGTAAAAG+AGG - chr1.1:50809983-50810002 None:intergenic 15.0%
!!! ATTGTTTTTTTAATTGTTAC+AGG + chr1.1:50809197-50809216 MS.gene038024:intron 15.0%
!!! TAATTTTATTTCAAGGAATT+TGG + chr1.1:50809429-50809448 MS.gene038024:intron 15.0%
!!! TTATTTAAAGCAGTATTAAA+AGG + chr1.1:50810454-50810473 MS.gene038024:intron 15.0%
!! AAATAGAAAACCTAATTCAA+TGG - chr1.1:50810347-50810366 None:intergenic 20.0%
!! AGCATATCTTATAAGTTAAT+TGG - chr1.1:50810315-50810334 None:intergenic 20.0%
!! ATATAAATGGAAACAACAAA+TGG - chr1.1:50810170-50810189 None:intergenic 20.0%
!! GTTGAACAATTCATATAAAT+TGG - chr1.1:50810487-50810506 None:intergenic 20.0%
!! TAAAAAAACAATCAGAAAAC+AGG - chr1.1:50809189-50809208 None:intergenic 20.0%
!! TCAATCACCATAAATATAAA+TGG - chr1.1:50810183-50810202 None:intergenic 20.0%
!! TTTCTATTTATCTTACTTAC+AGG + chr1.1:50810358-50810377 MS.gene038024:intron 20.0%
!!! AAATCAATTTTTGCTATTGA+TGG + chr1.1:50809119-50809138 MS.gene038024:CDS 20.0%
!!! ATTGCTGTAATTTTATTTCA+AGG + chr1.1:50809422-50809441 MS.gene038024:intron 20.0%
!!! GAACTTTATCTCATTATTTT+AGG + chr1.1:50809812-50809831 MS.gene038024:intron 20.0%
!!! GTTGTTTCCATTTATATTTA+TGG + chr1.1:50810173-50810192 MS.gene038024:intron 20.0%
! AATAAAAGAAATGAAAGGAG+TGG - chr1.1:50809162-50809181 None:intergenic 25.0%
! AGAGTATAGATTATTCATTG+AGG - chr1.1:50809742-50809761 None:intergenic 25.0%
! ATTTATCTTACTTACAGGAT+TGG + chr1.1:50810363-50810382 MS.gene038024:intron 25.0%
! GCACAAATAAAAGAAATGAA+AGG - chr1.1:50809167-50809186 None:intergenic 25.0%
!! GGAAATTTGCTCATTTAATT+TGG - chr1.1:50809913-50809932 None:intergenic 25.0%
!!! CATTCTTAAGTTGATTTTGA+GGG + chr1.1:50810264-50810283 MS.gene038024:intron 25.0%
AATCAACTTAAGAATGCCAT+AGG - chr1.1:50810260-50810279 None:intergenic 30.0%
AATGAGAAAAACTTACATCG+TGG - chr1.1:50809391-50809410 None:intergenic 30.0%
ACATTGAAACCCAAATAACA+AGG - chr1.1:50809706-50809725 None:intergenic 30.0%
ATAATAGCAGCAAAGATTTC+AGG - chr1.1:50809299-50809318 None:intergenic 30.0%
ATTATGGATTTCTACTCTTC+AGG + chr1.1:50809314-50809333 MS.gene038024:CDS 30.0%
ATTGAAACCCAAATAACAAG+GGG - chr1.1:50809704-50809723 None:intergenic 30.0%
CATTGAAACCCAAATAACAA+GGG - chr1.1:50809705-50809724 None:intergenic 30.0%
GCATATTACAAGGATAAACT+TGG + chr1.1:50810286-50810305 MS.gene038024:intron 30.0%
TACAAATGCTTCATTACAGA+AGG - chr1.1:50810232-50810251 None:intergenic 30.0%
TAGAAAACCTAATTCAATGG+AGG - chr1.1:50810344-50810363 None:intergenic 30.0%
TGAAATCTTTGCTGCTATTA+TGG + chr1.1:50809298-50809317 MS.gene038024:CDS 30.0%
TGTCAACAACAATATTGTCT+TGG - chr1.1:50809934-50809953 None:intergenic 30.0%
TTCAAGATCTCAAAACTGAA+TGG + chr1.1:50809543-50809562 MS.gene038024:intron 30.0%
! TTTTGTCACTGTTACCAAAT+CGG + chr1.1:50809247-50809266 MS.gene038024:CDS 30.0%
!! GTTTGTTTTCTCTAGAGATA+CGG + chr1.1:50810003-50810022 MS.gene038024:intron 30.0%
!! TAAGTTTCCCCTTGTTATTT+GGG + chr1.1:50809694-50809713 MS.gene038024:intron 30.0%
!! TTTGTTTTCTCTAGAGATAC+GGG + chr1.1:50810004-50810023 MS.gene038024:intron 30.0%
!!! ATTCAGTTTTGAGATCTTGA+AGG - chr1.1:50809544-50809563 None:intergenic 30.0%
!!! GCATTCTTAAGTTGATTTTG+AGG + chr1.1:50810263-50810282 MS.gene038024:intron 30.0%
AACATAAGAGACTCTGGATT+TGG - chr1.1:50809020-50809039 None:intergenic 35.0%
AAGCATTTGTACCTTTCCTA+TGG + chr1.1:50810241-50810260 MS.gene038024:intron 35.0%
ACTTAAGAATGCCATAGGAA+AGG - chr1.1:50810255-50810274 None:intergenic 35.0%
ATCGTCAAACTCAAAATGCA+AGG + chr1.1:50810028-50810047 MS.gene038024:CDS 35.0%
TACAGAAGGATGATAAGTTG+AGG - chr1.1:50810218-50810237 None:intergenic 35.0%
TAGTTGTCCTCCATTGAATT+AGG + chr1.1:50810334-50810353 MS.gene038024:intron 35.0%
TTAGGAAAACGATTACGACT+AGG + chr1.1:50808798-50808817 MS.gene038024:CDS 35.0%
! ACAAATTGTTTTCGCTGTCT+GGG + chr1.1:50808867-50808886 MS.gene038024:CDS 35.0%
! GCAAAAATTGATTTAGCGAG+AGG - chr1.1:50809113-50809132 None:intergenic 35.0%
! GGAATTACTCGTGTTTTCTT+TGG + chr1.1:50809218-50809237 MS.gene038024:intron 35.0%
! GTCGTAATCGTTTTCCTAAT+CGG - chr1.1:50808797-50808816 None:intergenic 35.0%
! TACAAATTGTTTTCGCTGTC+TGG + chr1.1:50808866-50808885 MS.gene038024:CDS 35.0%
!! AGGAAGAGAAAAAAGCATTG+CGG - chr1.1:50808926-50808945 None:intergenic 35.0%
!! GATTTTGAGGGCATATTACA+AGG + chr1.1:50810276-50810295 MS.gene038024:intron 35.0%
!! GTAAGTTTCCCCTTGTTATT+TGG + chr1.1:50809693-50809712 MS.gene038024:intron 35.0%
!! GTGATTAGTCTCTGATTTGA+GGG - chr1.1:50808835-50808854 None:intergenic 35.0%
!! TAATGCAAACTTGTTACCTC+AGG - chr1.1:50810127-50810146 None:intergenic 35.0%
!! TGTGATTAGTCTCTGATTTG+AGG - chr1.1:50808836-50808855 None:intergenic 35.0%
!! TTGTTTTCTCTAGAGATACG+GGG + chr1.1:50810005-50810024 MS.gene038024:intron 35.0%
AAATGAAAGGAGTGGAGAGA+GGG - chr1.1:50809154-50809173 None:intergenic 40.0%
AAATGGAGATGGAAATGGTG+AGG - chr1.1:50808952-50808971 None:intergenic 40.0%
AGATAAAGTTCAACCCACCT+AGG - chr1.1:50809803-50809822 None:intergenic 40.0%
ATGCTTACCTGTTTGCATAC+AGG + chr1.1:50809567-50809586 MS.gene038024:intron 40.0%
CAGCAAAGATTTCAGGCTTA+AGG - chr1.1:50809292-50809311 None:intergenic 40.0%
GAATCATCCTGTATGCAAAC+AGG - chr1.1:50809577-50809596 None:intergenic 40.0%
GAGTCTCTTATGTTTCATCC+TGG + chr1.1:50809026-50809045 MS.gene038024:CDS 40.0%
GCAAAGGTAGAATGGAACTT+TGG - chr1.1:50809781-50809800 None:intergenic 40.0%
GGATGAAACATAAGAGACTC+TGG - chr1.1:50809026-50809045 None:intergenic 40.0%
GTAAATGCAGCAAGCAACAT+TGG - chr1.1:50810534-50810553 None:intergenic 40.0%
GTGGAAAATGGAGATGGAAA+TGG - chr1.1:50808957-50808976 None:intergenic 40.0%
TAGTTGCAAGGTTGAAACGA+TGG - chr1.1:50808900-50808919 None:intergenic 40.0%
TGAAACAGTTGCGATGATCA+AGG + chr1.1:50809597-50809616 MS.gene038024:CDS 40.0%
TTGCTGCATTTACAGGTCAA+AGG + chr1.1:50810541-50810560 MS.gene038024:intron 40.0%
TTTAGCGAGAGGAGAATTCA+TGG - chr1.1:50809102-50809121 None:intergenic 40.0%
! AAAATGCAAGGAGCATGTAG+TGG + chr1.1:50810040-50810059 MS.gene038024:CDS 40.0%
! ATGTTGCTTGCTGCATTTAC+AGG + chr1.1:50810534-50810553 MS.gene038024:intron 40.0%
! CAAAGGTGTGGAACAAGAAT+TGG + chr1.1:50810558-50810577 MS.gene038024:CDS 40.0%
! TGCGATGATCAAGGAACTTT+TGG + chr1.1:50809606-50809625 MS.gene038024:CDS 40.0%
! TTTCCATCTCCATTTTCCAC+CGG + chr1.1:50808957-50808976 MS.gene038024:CDS 40.0%
!! AGCAGCTTTAAGTGGACAAA+CGG + chr1.1:50810597-50810616 MS.gene038024:CDS 40.0%
!! GAAGAAGAAGCAGCTTTAAG+TGG + chr1.1:50810589-50810608 MS.gene038024:CDS 40.0%
AAACATACTCCTCCTTTGCC+CGG - chr1.1:50808979-50808998 None:intergenic 45.0%
AATGAAAGGAGTGGAGAGAG+GGG - chr1.1:50809153-50809172 None:intergenic 45.0%
AATTCACGATCCAAGTGCTC+GGG + chr1.1:50809491-50809510 MS.gene038024:intron 45.0%
ACATCCATGACAGGTTTACC+AGG - chr1.1:50809047-50809066 None:intergenic 45.0%
CAAATCGGAAGATGCATCGT+GGG + chr1.1:50809262-50809281 MS.gene038024:CDS 45.0%
CAATTCACGATCCAAGTGCT+CGG + chr1.1:50809490-50809509 MS.gene038024:intron 45.0%
CATCATCCAGTACAGTTGGT+CGG - chr1.1:50809642-50809661 None:intergenic 45.0%
CATTCTACCTTTGCCTAGGT+GGG + chr1.1:50809787-50809806 MS.gene038024:intron 45.0%
GAAATGAAAGGAGTGGAGAG+AGG - chr1.1:50809155-50809174 None:intergenic 45.0%
GCATTTACAGGTCAAAGGTG+TGG + chr1.1:50810546-50810565 MS.gene038024:intron 45.0%
GCTGATGCATTATGTACCTG+AGG + chr1.1:50810108-50810127 MS.gene038024:CDS 45.0%
GGAACAAGAATTGGATGCTG+AGG + chr1.1:50810567-50810586 MS.gene038024:CDS 45.0%
GGTAAACCTGTCATGGATGT+TGG + chr1.1:50809047-50809066 MS.gene038024:CDS 45.0%
GTTCCATTCTACCTTTGCCT+AGG + chr1.1:50809783-50809802 MS.gene038024:intron 45.0%
TCAGAGTCACCGAAGAACTT+GGG - chr1.1:50810069-50810088 None:intergenic 45.0%
TCAGGTGAACCACTCTTTCT+AGG + chr1.1:50809332-50809351 MS.gene038024:CDS 45.0%
TCATCCTGGTAAACCTGTCA+TGG + chr1.1:50809040-50809059 MS.gene038024:CDS 45.0%
TTCAGAGTCACCGAAGAACT+TGG - chr1.1:50810070-50810089 None:intergenic 45.0%
! AACTGTACTGGATGATGGTG+GGG + chr1.1:50809645-50809664 MS.gene038024:CDS 45.0%
! AGGCGTACTGTTTTCCGATT+AGG + chr1.1:50808780-50808799 MS.gene038024:CDS 45.0%
! ATCGTGGATTGCTGTGTCTT+TGG - chr1.1:50809375-50809394 None:intergenic 45.0%
! CAACTGTACTGGATGATGGT+GGG + chr1.1:50809644-50809663 MS.gene038024:CDS 45.0%
! CGGGAGTATGAGATTTGTCT+AGG + chr1.1:50809510-50809529 MS.gene038024:intron 45.0%
! GATTGCTGTGTCTTTGGAAG+CGG - chr1.1:50809369-50809388 None:intergenic 45.0%
! TTCCATCTCCATTTTCCACC+GGG + chr1.1:50808958-50808977 MS.gene038024:CDS 45.0%
!! TCTTCGGTGACTCTGAAATC+AGG + chr1.1:50810073-50810092 MS.gene038024:CDS 45.0%
AAGAGACTCTGGATTTGGCG+TGG - chr1.1:50809015-50809034 None:intergenic 50.0%
AGATGGAAATGGTGAGGCAG+AGG - chr1.1:50808946-50808965 None:intergenic 50.0%
AGCGAGAGGAGAATTCATGG+CGG - chr1.1:50809099-50809118 None:intergenic 50.0%
AGTTCAACCCACCTAGGCAA+AGG - chr1.1:50809797-50809816 None:intergenic 50.0%
ATCTCATACTCCCGAGCACT+TGG - chr1.1:50809504-50809523 None:intergenic 50.0%
ATGAAAGGAGTGGAGAGAGG+GGG - chr1.1:50809152-50809171 None:intergenic 50.0%
CCAAATCGGAAGATGCATCG+TGG + chr1.1:50809261-50809280 MS.gene038024:CDS 50.0%
CCACCATCATCCAGTACAGT+TGG - chr1.1:50809646-50809665 None:intergenic 50.0%
CCACCTAGGCAAAGGTAGAA+TGG - chr1.1:50809789-50809808 None:intergenic 50.0%
CCACGATGCATCTTCCGATT+TGG - chr1.1:50809264-50809283 None:intergenic 50.0%
CCATTCTACCTTTGCCTAGG+TGG + chr1.1:50809786-50809805 MS.gene038024:intron 50.0%
CGACCAACTGTACTGGATGA+TGG + chr1.1:50809640-50809659 MS.gene038024:CDS 50.0%
CGAGCACTTGGATCGTGAAT+TGG - chr1.1:50809492-50809511 None:intergenic 50.0%
GCATTGCGGTTGTAGTTGCA+AGG - chr1.1:50808912-50808931 None:intergenic 50.0%
GGAACGAGGGTTAGGGAAAT+CGG - chr1.1:50809078-50809097 None:intergenic 50.0%
GGTGGGGACATTGTGTATTG+TGG + chr1.1:50809661-50809680 MS.gene038024:CDS 50.0%
TAGTGGCTGCCCAAGTTCTT+CGG + chr1.1:50810057-50810076 MS.gene038024:CDS 50.0%
TCGTATCCGACCAACTGTAC+TGG + chr1.1:50809633-50809652 MS.gene038024:CDS 50.0%
! CCAACTGTACTGGATGATGG+TGG + chr1.1:50809643-50809662 MS.gene038024:CDS 50.0%
! GAGAATTCATGGCGGAACGA+GGG - chr1.1:50809091-50809110 None:intergenic 50.0%
! GATTTGGCGTGGACTGTGTT+TGG - chr1.1:50809004-50809023 None:intergenic 50.0%
CTCCTTTGCCCGGTGGAAAA+TGG - chr1.1:50808969-50808988 None:intergenic 55.0%
GCGCTACCAACATCCATGAC+AGG - chr1.1:50809056-50809075 None:intergenic 55.0%
GCTTGGGAGCCTAGAAAGAG+TGG - chr1.1:50809344-50809363 None:intergenic 55.0%
TGAAAGGAGTGGAGAGAGGG+GGG - chr1.1:50809151-50809170 None:intergenic 55.0%
TGCCCGGTGGAAAATGGAGA+TGG - chr1.1:50808963-50808982 None:intergenic 55.0%
! CATTTTCCACCGGGCAAAGG+AGG + chr1.1:50808967-50808986 MS.gene038024:CDS 55.0%
! CTCCATTTTCCACCGGGCAA+AGG + chr1.1:50808964-50808983 MS.gene038024:CDS 55.0%
! GGAGAATTCATGGCGGAACG+AGG - chr1.1:50809092-50809111 None:intergenic 55.0%
! GTCTTTGGAAGCGGCAGCTT+GGG - chr1.1:50809360-50809379 None:intergenic 55.0%
! TCATGGCGGAACGAGGGTTA+GGG - chr1.1:50809085-50809104 None:intergenic 55.0%
! TGTCTTTGGAAGCGGCAGCT+TGG - chr1.1:50809361-50809380 None:intergenic 55.0%
! TTCATGGCGGAACGAGGGTT+AGG - chr1.1:50809086-50809105 None:intergenic 55.0%
CATACTCCTCCTTTGCCCGG+TGG - chr1.1:50808976-50808995 None:intergenic 60.0%
GAAAGGAGTGGAGAGAGGGG+GGG - chr1.1:50809150-50809169 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 50808768 50810624 50808768 ID=MS.gene038024
chr1.1 mRNA 50808768 50810624 50808768 ID=MS.gene038024.t1;Parent=MS.gene038024
chr1.1 exon 50808768 50809140 50808768 ID=MS.gene038024.t1.exon1;Parent=MS.gene038024.t1
chr1.1 CDS 50808768 50809140 50808768 ID=cds.MS.gene038024.t1;Parent=MS.gene038024.t1
chr1.1 exon 50809219 50809394 50809219 ID=MS.gene038024.t1.exon2;Parent=MS.gene038024.t1
chr1.1 CDS 50809219 50809394 50809219 ID=cds.MS.gene038024.t1;Parent=MS.gene038024.t1
chr1.1 exon 50809589 50809692 50809589 ID=MS.gene038024.t1.exon3;Parent=MS.gene038024.t1
chr1.1 CDS 50809589 50809692 50809589 ID=cds.MS.gene038024.t1;Parent=MS.gene038024.t1
chr1.1 exon 50810018 50810129 50810018 ID=MS.gene038024.t1.exon4;Parent=MS.gene038024.t1
chr1.1 CDS 50810018 50810129 50810018 ID=cds.MS.gene038024.t1;Parent=MS.gene038024.t1
chr1.1 exon 50810556 50810624 50810556 ID=MS.gene038024.t1.exon5;Parent=MS.gene038024.t1
chr1.1 CDS 50810556 50810624 50810556 ID=cds.MS.gene038024.t1;Parent=MS.gene038024.t1
Gene Sequence

>MS.gene038024

ATGACGGTGGTGAGGCGTACTGTTTTCCGATTAGGAAAACGATTACGACTAGGACTCTTCAATTCCCTCAAATCAGAGACTAATCACAATGATCTAAATACAAATTGTTTTCGCTGTCTGGGTGCAACGCCATCGTTTCAACCTTGCAACTACAACCGCAATGCTTTTTTCTCTTCCTCTGCCTCACCATTTCCATCTCCATTTTCCACCGGGCAAAGGAGGAGTATGTTTATCCAAACACAGTCCACGCCAAATCCAGAGTCTCTTATGTTTCATCCTGGTAAACCTGTCATGGATGTTGGTAGCGCCGATTTCCCTAACCCTCGTTCCGCCATGAATTCTCCTCTCGCTAAATCAATTTTTGCTATTGATGGTACTGCCCCCCCTCTCTCCACTCCTTTCATTTCTTTTATTTGTGCCTGTTTTCTGATTGTTTTTTTAATTGTTACAGGAATTACTCGTGTTTTCTTTGGATCTGATTTTGTCACTGTTACCAAATCGGAAGATGCATCGTGGGAATTCCTTAAGCCTGAAATCTTTGCTGCTATTATGGATTTCTACTCTTCAGGTGAACCACTCTTTCTAGGCTCCCAAGCTGCCGCTTCCAAAGACACAGCAATCCACGATGTAAGTTTTTCTCATTTCTATGCTGATATTGCTGTAATTTTATTTCAAGGAATTTGGCCTTTTACTTAAATTTCATAAAAGGTCAAATTTATTACCAATTCACGATCCAAGTGCTCGGGAGTATGAGATTTGTCTAGGTTTTGACACCTTCAAGATCTCAAAACTGAATGGTATGCTTACCTGTTTGCATACAGGATGATTCTGAAACAGTTGCGATGATCAAGGAACTTTTGGAGACTCGTATCCGACCAACTGTACTGGATGATGGTGGGGACATTGTGTATTGTGGTTTTGATTCGTAAGTTTCCCCTTGTTATTTGGGTTTCAATGTTACATGCACTTAACCTCAATGAATAATCTATACTCTTAACAAAATAGAAGTTCCAAAGTTCCATTCTACCTTTGCCTAGGTGGGTTGAACTTTATCTCATTATTTTAGGATCTCTGTGTTAAAAAATAATTGATGATATCTCATACAACAACATGCTAACAAATCATACTAAAAGTGAAATTAACCAAATTAAATGAGCAAATTTCCAAGACAATATTGTTGTTGACAATGCTAATGTTTGACATTATAGAATTCCTCTTTTACTTGTTTTTTATATGTTTGTTTTCTCTAGAGATACGGGGATCGTCAAACTCAAAATGCAAGGAGCATGTAGTGGCTGCCCAAGTTCTTCGGTGACTCTGAAATCAGGCATTGAGAATATGCTGATGCATTATGTACCTGAGGTAACAAGTTTGCATTATAATTTGTGATGAAACTGATCCATTTGTTGTTTCCATTTATATTTATGGTGATTGAATTGATTGAAATCCTCAACTTATCATCCTTCTGTAATGAAGCATTTGTACCTTTCCTATGGCATTCTTAAGTTGATTTTGAGGGCATATTACAAGGATAAACTTGGAGACCAATTAACTTATAAGATATGCTAGTTGTCCTCCATTGAATTAGGTTTTCTATTTATCTTACTTACAGGATTGGTTGCATGCAAGTTGTCGAATTTATGCATACTAGAAAGTATAGACAAAGCTGTATTGATTATTGAGTTTTTATTTAAAGCAGTATTAAAAGGCTGAGTTCCAATTTATATGAATTGTTCAACTATATAATATCGAGAAACAATCTTCCAATGTTGCTTGCTGCATTTACAGGTCAAAGGTGTGGAACAAGAATTGGATGCTGAGGAAGAAGAAGCAGCTTTAAGTGGACAAACGGAGTAG
Protein sequence

>MS.gene038024.t1

MTVVRRTVFRLGKRLRLGLFNSLKSETNHNDLNTNCFRCLGATPSFQPCNYNRNAFFSSSASPFPSPFSTGQRRSMFIQTQSTPNPESLMFHPGKPVMDVGSADFPNPRSAMNSPLAKSIFAIDGITRVFFGSDFVTVTKSEDASWEFLKPEIFAAIMDFYSSGEPLFLGSQAAASKDTAIHDDDSETVAMIKELLETRIRPTVLDDGGDIVYCGFDSDTGIVKLKMQGACSGCPSSSVTLKSGIENMLMHYVPEVKGVEQELDAEEEEAALSGQTE