AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene040467

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene040467.t1 MTR_3g081640 76.369 347 69 1 1 334 15 361 0.0 508
MS.gene040467.t1 MTR_3g081580 74.128 344 79 3 1 334 15 358 4.20e-172 482
MS.gene040467.t1 MTR_3g082050 75.740 338 77 1 2 334 12 349 3.47e-164 462
MS.gene040467.t1 MTR_3g082050 75.821 335 76 1 5 334 43 377 2.91e-163 460
MS.gene040467.t1 MTR_3g082050 76.341 317 70 1 23 334 56 372 6.90e-161 454
MS.gene040467.t1 MTR_3g081690 75.862 319 72 1 2 315 12 330 1.50e-153 434
MS.gene040467.t1 MTR_3g081690 76.510 298 65 1 23 315 56 353 2.74e-150 427
MS.gene040467.t1 MTR_2g064310 56.560 343 139 3 2 334 16 358 4.36e-133 383
MS.gene040467.t1 MTR_6g007687 51.176 340 150 4 1 332 14 345 2.84e-107 317
MS.gene040467.t1 MTR_8g105030 49.702 336 158 3 1 328 15 347 4.58e-107 318
MS.gene040467.t1 MTR_4g083570 48.817 338 169 3 1 334 13 350 6.58e-107 316
MS.gene040467.t1 MTR_3g104400 47.368 361 149 4 15 334 5 365 2.47e-102 305
MS.gene040467.t1 MTR_1g016120 46.409 362 152 6 15 334 13 374 3.08e-95 287
MS.gene040467.t1 MTR_3g081690 71.681 226 56 2 98 315 14 239 2.45e-93 278
MS.gene040467.t1 MTR_3g081690 73.958 192 50 0 124 315 4 195 6.40e-83 250
MS.gene040467.t1 MTR_3g081690 75.806 186 45 0 130 315 32 217 7.41e-82 248
MS.gene040467.t1 MTR_5g071990 42.900 331 160 8 11 334 10 318 2.15e-78 242
MS.gene040467.t1 MTR_3g081630 51.685 89 33 3 67 155 23 101 3.77e-18 80.1
MS.gene040467.t1 MTR_4g006710 44.186 86 47 1 23 108 26 110 1.10e-14 69.7
MS.gene040467.t1 MTR_2g097580 22.373 295 194 10 51 333 64 335 6.47e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene040467.t1 AT3G12750 55.652 345 136 4 1 334 17 355 7.46e-129 372
MS.gene040467.t1 AT1G05300 54.848 330 136 4 16 334 33 360 2.65e-118 346
MS.gene040467.t1 AT2G32270 53.235 340 132 5 4 334 18 339 1.34e-111 328
MS.gene040467.t1 AT1G31260 49.408 338 159 3 9 334 27 364 9.27e-108 319
MS.gene040467.t1 AT5G62160 51.009 347 152 7 1 334 14 355 4.86e-107 317
MS.gene040467.t1 AT4G19680 46.746 338 171 4 3 334 16 350 5.86e-101 301
MS.gene040467.t1 AT4G19690 47.006 334 168 2 3 334 21 347 4.92e-98 293
MS.gene040467.t1 AT2G04032 48.457 324 148 5 24 334 48 365 6.70e-98 294
MS.gene040467.t1 AT1G10970 44.932 365 155 5 16 334 10 374 1.24e-93 283
MS.gene040467.t1 AT1G10970 44.932 365 155 5 16 334 10 374 1.24e-93 283
MS.gene040467.t1 AT1G60960 41.562 397 168 7 2 334 19 415 1.18e-89 275
MS.gene040467.t1 AT1G60960 41.562 397 168 7 2 334 29 425 1.29e-89 275
MS.gene040467.t1 AT4G33020 41.081 370 165 5 15 334 25 391 7.59e-86 264
MS.gene040467.t1 AT4G33020 40.751 346 154 4 37 334 2 344 3.81e-79 245
MS.gene040467.t1 AT2G30080 43.077 325 171 6 23 334 18 341 1.19e-74 234
MS.gene040467.t1 AT1G05300 51.092 229 99 4 16 233 33 259 1.01e-69 218
MS.gene040467.t1 AT4G19680 44.351 239 124 4 3 235 16 251 3.15e-62 199
MS.gene040467.t1 AT4G19690 38.587 184 104 2 3 184 21 197 1.02e-30 115
MS.gene040467.t1 AT1G60960 35.714 210 99 5 2 175 29 238 1.06e-28 113

Find 62 sgRNAs with CRISPR-Local

Find 121 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTAATTCACCTTGTTTAA+AGG 0.198892 7.2:-70790332 MS.gene040467:CDS
AGCCGGAATCTTAATTTATA+TGG 0.200488 7.2:-70788805 MS.gene040467:CDS
GTTATTCATTCGGTTATAAT+AGG 0.239840 7.2:-70789914 MS.gene040467:CDS
TGCAGCTACGAGTGGCTTTA+TGG 0.261742 7.2:+70789859 None:intergenic
CTTCATGCTCTACATCATTC+TGG 0.327634 7.2:+70790182 None:intergenic
GAGATAGAATGCATCCTAAT+AGG 0.339466 7.2:+70788721 None:intergenic
AATAGTAAAAGACTCCTATT+AGG 0.354349 7.2:-70788735 MS.gene040467:CDS
TGCCATATAAATTAAGATTC+CGG 0.361053 7.2:+70788803 None:intergenic
TTACCTGTGATATAACTCTA+TGG 0.368344 7.2:+70790077 None:intergenic
CGTGGCTATGTTCTCTGCTA+TGG 0.382601 7.2:-70790275 MS.gene040467:CDS
TTGTTTAAAGGATCATCCTT+GGG 0.389742 7.2:-70790320 MS.gene040467:CDS
ATAGCCACGAATTCGGCTAA+TGG 0.397053 7.2:+70790289 None:intergenic
GTTGGGTATTGTTATTCATT+CGG 0.409575 7.2:-70789924 MS.gene040467:CDS
GTGGCTATGTTCTCTGCTAT+GGG 0.410168 7.2:-70790274 MS.gene040467:CDS
CCTAAGGCTCTTATTGTTGA+AGG 0.411092 7.2:-70788846 MS.gene040467:CDS
TGCATTCTATCTCTTGTACT+TGG 0.416873 7.2:-70788711 MS.gene040467:CDS
CTTCTGCGGCTGTTAGTGTT+GGG 0.421692 7.2:+70790590 None:intergenic
TTGACTACTCCGGTAGGGAT+TGG 0.423041 7.2:-70788909 MS.gene040467:CDS
GGTATCACTTTGCCGAGAAA+AGG 0.433323 7.2:+70790460 None:intergenic
TATCTTGTAAACAAGGGCTT+TGG 0.436160 7.2:+70790531 None:intergenic
CCTTCTGCGGCTGTTAGTGT+TGG 0.438219 7.2:+70790589 None:intergenic
CCTTCAACAATAAGAGCCTT+AGG 0.440595 7.2:+70788846 None:intergenic
AGAGAACATAGCCACGAATT+CGG 0.443717 7.2:+70790282 None:intergenic
CTGTTAGTGTTGGGATTATG+AGG 0.443819 7.2:+70790599 None:intergenic
GAATGTATCTATTGCAATCA+TGG 0.445997 7.2:-70788946 MS.gene040467:CDS
TTAAGACTCTCTGAAGCATC+CGG 0.452112 7.2:+70790349 None:intergenic
CTTGTTTAAAGGATCATCCT+TGG 0.464419 7.2:-70790321 MS.gene040467:CDS
CTATCTCTTGTACTTGGAGC+CGG 0.477778 7.2:-70788705 MS.gene040467:CDS
AATGTATAGGTGCTGGAGTT+GGG 0.481740 7.2:-70789941 MS.gene040467:intron
GTAGGGATTGGAATTGGTCT+AGG 0.485389 7.2:-70788897 MS.gene040467:CDS
ACTCCGGTAGGGATTGGAAT+TGG 0.485985 7.2:-70788903 MS.gene040467:CDS
CGGGAGCACATGAACGAAAC+CGG 0.489796 7.2:+70790369 None:intergenic
CGGTTTCGTTCATGTGCTCC+CGG 0.492507 7.2:-70790368 MS.gene040467:CDS
CATGGTCATGCCTCTACAGA+TGG 0.493108 7.2:-70790118 MS.gene040467:CDS
GAATGTATAGGTGCTGGAGT+TGG 0.495116 7.2:-70789942 MS.gene040467:intron
ATCTTCAATGCAGCTTCAGC+CGG 0.496676 7.2:-70788822 MS.gene040467:CDS
GTATCACTTTGCCGAGAAAA+GGG 0.498507 7.2:+70790461 None:intergenic
ATACTAGTTGCAAGTGCAAT+CGG 0.511165 7.2:-70790493 MS.gene040467:CDS
GGCTAAAAGAGACATGCAAC+CGG 0.527349 7.2:+70788686 None:intergenic
TTTCTTTGACTACTCCGGTA+GGG 0.530495 7.2:-70788914 MS.gene040467:CDS
TTCATCACATGTACCTTCTG+CGG 0.530960 7.2:+70790576 None:intergenic
TAGGGATTGGAATTGGTCTA+GGG 0.549857 7.2:-70788896 MS.gene040467:CDS
AAGCTGCTATCTTGTAAACA+AGG 0.556111 7.2:+70790524 None:intergenic
GTTATAATAGGAATTTCTCT+CGG 0.577131 7.2:-70789902 MS.gene040467:CDS
TAAGACTCTCTGAAGCATCC+GGG 0.588155 7.2:+70790350 None:intergenic
ATGGTCATGCCTCTACAGAT+GGG 0.598457 7.2:-70790117 MS.gene040467:CDS
TTATGATGAGAACAGTCCTA+AGG 0.607068 7.2:-70788862 MS.gene040467:CDS
TCGCCATAGAGTTATATCAC+AGG 0.609441 7.2:-70790080 MS.gene040467:intron
CAAGGATGATCCTTTAAACA+AGG 0.615524 7.2:+70790322 None:intergenic
TTCTGATGACCCATCTGTAG+AGG 0.617295 7.2:+70790108 None:intergenic
GCATCACACGGTCATGCACA+TGG 0.620271 7.2:-70790136 MS.gene040467:CDS
AGCTGCTATCTTGTAAACAA+GGG 0.623629 7.2:+70790525 None:intergenic
AGACCAATTCCAATCCCTAC+CGG 0.624986 7.2:+70788900 None:intergenic
TGTTTAAAGGATCATCCTTG+GGG 0.628226 7.2:-70790319 MS.gene040467:CDS
CCAACACTAACAGCCGCAGA+AGG 0.637499 7.2:-70790589 MS.gene040467:CDS
CAGAATGATGTAGAGCATGA+AGG 0.641469 7.2:-70790181 MS.gene040467:CDS
GCTTGGATGTTGTATAACCC+AGG 0.651585 7.2:-70789804 MS.gene040467:intron
AAAGTCAATGCAGCTACGAG+TGG 0.654533 7.2:+70789851 None:intergenic
TGGCTATGTTCTCTGCTATG+GGG 0.662091 7.2:-70790273 MS.gene040467:CDS
GCTAATGGAAAATCACCCCA+AGG 0.677334 7.2:+70790304 None:intergenic
GTTCATACACATGCATCACA+CGG 0.678954 7.2:-70790148 MS.gene040467:CDS
GAGCACATGAACGAAACCGG+TGG 0.727435 7.2:+70790372 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACAAAAAATATATTTTTTTC+GGG + chr7.2:70788857-70788876 None:intergenic 10.0%
!! AACTCTCAAAAAATAATTTA+AGG - chr7.2:70790045-70790064 MS.gene040467:intron 15.0%
!! AATAAGTTAACAAACAATTT+AGG + chr7.2:70790285-70790304 None:intergenic 15.0%
!! ATACTAAATTGGATTTAATA+AGG + chr7.2:70789916-70789935 None:intergenic 15.0%
!! TACTAAATTGGATTTAATAA+GGG + chr7.2:70789915-70789934 None:intergenic 15.0%
!! TTTATAGTATATTCTTAAGA+TGG + chr7.2:70790143-70790162 None:intergenic 15.0%
!!! AAGTTTTATAATTTGAACTA+TGG - chr7.2:70790103-70790122 MS.gene040467:CDS 15.0%
!!! AGTATCTTATCTTTATATTT+TGG + chr7.2:70789782-70789801 None:intergenic 15.0%
!!! CAAAAAATATATTTTTTTCG+GGG + chr7.2:70788856-70788875 None:intergenic 15.0%
!!! TAAATTGTTTGTTAACTTAT+TGG - chr7.2:70790284-70790303 MS.gene040467:CDS 15.0%
!! AATACATGATTGTTAATTAC+TGG + chr7.2:70789560-70789579 None:intergenic 20.0%
!! AATTTAATTACTATGTACCA+TGG - chr7.2:70789255-70789274 MS.gene040467:intron 20.0%
!! ATGAATTGACTATAATTAGT+TGG - chr7.2:70789620-70789639 MS.gene040467:intron 20.0%
!! CAAAACTAAACATACTAAAT+TGG + chr7.2:70789927-70789946 None:intergenic 20.0%
!! TTGTTGAAAACTTAAAATCA+CGG + chr7.2:70789308-70789327 None:intergenic 20.0%
!!! AAAAAGAAACTTAGCTTTAT+AGG + chr7.2:70789751-70789770 None:intergenic 20.0%
!!! ATTGATTGTTTTGAATGTAT+AGG - chr7.2:70789327-70789346 MS.gene040467:intron 20.0%
!!! CAATTTAGTATGTTTAGTTT+TGG - chr7.2:70789925-70789944 MS.gene040467:CDS 20.0%
!!! TAACAATCATGTATTTTCTA+TGG - chr7.2:70789565-70789584 MS.gene040467:intron 20.0%
!!! TGATCTTTTCTTGTATATTA+GGG + chr7.2:70790261-70790280 None:intergenic 20.0%
!!! TTGATCTTTTCTTGTATATT+AGG + chr7.2:70790262-70790281 None:intergenic 20.0%
! AATAGTAAAAGACTCCTATT+AGG - chr7.2:70790546-70790565 MS.gene040467:CDS 25.0%
! AATTTGAACTATGGATATCA+TGG - chr7.2:70790112-70790131 MS.gene040467:CDS 25.0%
! GCATACTAAAAAATGATGTT+TGG + chr7.2:70790018-70790037 None:intergenic 25.0%
! GTTATAATAGGAATTTCTCT+CGG - chr7.2:70789379-70789398 MS.gene040467:intron 25.0%
! GTTATTCATTCGGTTATAAT+AGG - chr7.2:70789367-70789386 MS.gene040467:intron 25.0%
! TACTGGAAAGTAAACAAAAA+CGG + chr7.2:70789543-70789562 None:intergenic 25.0%
! TATAGAAAACACATAACTTG+TGG + chr7.2:70790220-70790239 None:intergenic 25.0%
! TGCCATATAAATTAAGATTC+CGG + chr7.2:70790481-70790500 None:intergenic 25.0%
!! ACTTTTCATCAACTTTTTGA+AGG - chr7.2:70789448-70789467 MS.gene040467:intron 25.0%
!! ATAGAAAACACATAACTTGT+GGG + chr7.2:70790219-70790238 None:intergenic 25.0%
!! TCTTAATTCACCTTGTTTAA+AGG - chr7.2:70788949-70788968 MS.gene040467:CDS 25.0%
!!! AACTTTGGTTTTCTTTATCA+TGG - chr7.2:70789686-70789705 MS.gene040467:intron 25.0%
!!! AGTTGGTATTTTTCAAACTT+TGG - chr7.2:70789637-70789656 MS.gene040467:intron 25.0%
!!! GCTAAGTTTCTTTTTGTTTT+CGG - chr7.2:70789756-70789775 MS.gene040467:intron 25.0%
!!! TCTTTTTTTGACAAGAACTT+TGG - chr7.2:70789671-70789690 MS.gene040467:intron 25.0%
AGCCGGAATCTTAATTTATA+TGG - chr7.2:70790476-70790495 MS.gene040467:CDS 30.0%
GAATGTATCTATTGCAATCA+TGG - chr7.2:70790335-70790354 MS.gene040467:CDS 30.0%
GTGATGAAAAAGATGAAGAT+AGG - chr7.2:70788720-70788739 MS.gene040467:CDS 30.0%
TTACCTGTGATATAACTCTA+TGG + chr7.2:70789207-70789226 None:intergenic 30.0%
TTCTATGTAATTGAACACCA+TGG + chr7.2:70789275-70789294 None:intergenic 30.0%
TTGGATTTAATAAGGGAGTT+TGG + chr7.2:70789908-70789927 None:intergenic 30.0%
TTGTTTAAAGGATCATCCTT+GGG - chr7.2:70788961-70788980 MS.gene040467:intron 30.0%
! GTTGGGTATTGTTATTCATT+CGG - chr7.2:70789357-70789376 MS.gene040467:intron 30.0%
! TTGATACAATTAGAGTACCT+GGG + chr7.2:70789497-70789516 None:intergenic 30.0%
!! ACGTTTTTGAAAATAAGCAG+TGG + chr7.2:70789056-70789075 None:intergenic 30.0%
AAGCTGCTATCTTGTAAACA+AGG + chr7.2:70788760-70788779 None:intergenic 35.0%
AGCTGCTATCTTGTAAACAA+GGG + chr7.2:70788759-70788778 None:intergenic 35.0%
ATACTAGTTGCAAGTGCAAT+CGG - chr7.2:70788788-70788807 MS.gene040467:CDS 35.0%
ATTGGAAATGCAATCATTGC+AGG - chr7.2:70790302-70790321 MS.gene040467:CDS 35.0%
CAAGGATGATCCTTTAAACA+AGG + chr7.2:70788962-70788981 None:intergenic 35.0%
CTTGTTTAAAGGATCATCCT+TGG - chr7.2:70788960-70788979 MS.gene040467:CDS 35.0%
GAGATAGAATGCATCCTAAT+AGG + chr7.2:70790563-70790582 None:intergenic 35.0%
TATCTTGTAAACAAGGGCTT+TGG + chr7.2:70788753-70788772 None:intergenic 35.0%
TGCATTCTATCTCTTGTACT+TGG - chr7.2:70790570-70790589 MS.gene040467:CDS 35.0%
TGTTTAAAGGATCATCCTTG+GGG - chr7.2:70788962-70788981 MS.gene040467:intron 35.0%
TTATGATGAGAACAGTCCTA+AGG - chr7.2:70790419-70790438 MS.gene040467:CDS 35.0%
TTTATGACCAATGCATTAGC+TGG - chr7.2:70789871-70789890 MS.gene040467:CDS 35.0%
! CTTGATACAATTAGAGTACC+TGG + chr7.2:70789498-70789517 None:intergenic 35.0%
! GTTCTTTTCTTTGACTACTC+CGG - chr7.2:70790362-70790381 MS.gene040467:CDS 35.0%
!! ATCAACTTTTTGAAGGCATG+GGG - chr7.2:70789455-70789474 MS.gene040467:intron 35.0%
!! CATCAACTTTTTGAAGGCAT+GGG - chr7.2:70789454-70789473 MS.gene040467:intron 35.0%
!! TCATCAACTTTTTGAAGGCA+TGG - chr7.2:70789453-70789472 MS.gene040467:intron 35.0%
!! TGTTTTGAATGTATAGGTGC+TGG - chr7.2:70789333-70789352 MS.gene040467:intron 35.0%
!!! CATGTCTCTTTTAGCCTTAT+GGG - chr7.2:70790602-70790621 MS.gene040467:CDS 35.0%
AGAGAACATAGCCACGAATT+CGG + chr7.2:70789002-70789021 None:intergenic 40.0%
CAAGTTACTTGTGACTGTAC+AGG - chr7.2:70789514-70789533 MS.gene040467:intron 40.0%
CAGAATGATGTAGAGCATGA+AGG - chr7.2:70789100-70789119 MS.gene040467:intron 40.0%
CCTAAGGCTCTTATTGTTGA+AGG - chr7.2:70790435-70790454 MS.gene040467:CDS 40.0%
CCTTCAACAATAAGAGCCTT+AGG + chr7.2:70790438-70790457 None:intergenic 40.0%
CTTCATGCTCTACATCATTC+TGG + chr7.2:70789102-70789121 None:intergenic 40.0%
GTATCACTTTGCCGAGAAAA+GGG + chr7.2:70788823-70788842 None:intergenic 40.0%
GTTCATACACATGCATCACA+CGG - chr7.2:70789133-70789152 MS.gene040467:intron 40.0%
TCGCCATAGAGTTATATCAC+AGG - chr7.2:70789201-70789220 MS.gene040467:intron 40.0%
TTCATCACATGTACCTTCTG+CGG + chr7.2:70788708-70788727 None:intergenic 40.0%
TTTCGATCCAGCTAATGCAT+TGG + chr7.2:70789881-70789900 None:intergenic 40.0%
TTTCTTTGACTACTCCGGTA+GGG - chr7.2:70790367-70790386 MS.gene040467:CDS 40.0%
! CTGTTAGTGTTGGGATTATG+AGG + chr7.2:70788685-70788704 None:intergenic 40.0%
! GGTGTTTGTATCCCTTTTCT+CGG - chr7.2:70788809-70788828 MS.gene040467:CDS 40.0%
! GTTATCAAAGCTTTTGCAGC+TGG - chr7.2:70788875-70788894 MS.gene040467:CDS 40.0%
! TAGGGATTGGAATTGGTCTA+GGG - chr7.2:70790385-70790404 MS.gene040467:CDS 40.0%
! TTTTCCATTAGCCGAATTCG+TGG - chr7.2:70788988-70789007 MS.gene040467:intron 40.0%
! TTTTCTTTGACTACTCCGGT+AGG - chr7.2:70790366-70790385 MS.gene040467:CDS 40.0%
!! AATGTATAGGTGCTGGAGTT+GGG - chr7.2:70789340-70789359 MS.gene040467:intron 40.0%
!! TTAAGACTCTCTGAAGCATC+CGG + chr7.2:70788935-70788954 None:intergenic 40.0%
!!! GCATGTCTCTTTTAGCCTTA+TGG - chr7.2:70790601-70790620 MS.gene040467:CDS 40.0%
!!! TTTTTTTCGGGGCTTAATGC+AGG + chr7.2:70788845-70788864 None:intergenic 40.0%
AAAGTCAATGCAGCTACGAG+TGG + chr7.2:70789433-70789452 None:intergenic 45.0%
AGACCAATTCCAATCCCTAC+CGG + chr7.2:70790384-70790403 None:intergenic 45.0%
ATAGCCACGAATTCGGCTAA+TGG + chr7.2:70788995-70789014 None:intergenic 45.0%
ATCTTCAATGCAGCTTCAGC+CGG - chr7.2:70790459-70790478 MS.gene040467:CDS 45.0%
ATGGTCATGCCTCTACAGAT+GGG - chr7.2:70789164-70789183 MS.gene040467:intron 45.0%
CTATCTCTTGTACTTGGAGC+CGG - chr7.2:70790576-70790595 MS.gene040467:CDS 45.0%
GCTAATGGAAAATCACCCCA+AGG + chr7.2:70788980-70788999 None:intergenic 45.0%
GCTTGGATGTTGTATAACCC+AGG - chr7.2:70789477-70789496 MS.gene040467:intron 45.0%
GGCTAAAAGAGACATGCAAC+CGG + chr7.2:70790598-70790617 None:intergenic 45.0%
GGTATCACTTTGCCGAGAAA+AGG + chr7.2:70788824-70788843 None:intergenic 45.0%
GTGGCTATGTTCTCTGCTAT+GGG - chr7.2:70789007-70789026 MS.gene040467:intron 45.0%
TGGCTATGTTCTCTGCTATG+GGG - chr7.2:70789008-70789027 MS.gene040467:intron 45.0%
TTCTGATGACCCATCTGTAG+AGG + chr7.2:70789176-70789195 None:intergenic 45.0%
! GTAGGGATTGGAATTGGTCT+AGG - chr7.2:70790384-70790403 MS.gene040467:CDS 45.0%
! TGCTATGGGGACTCTTTTGA+TGG - chr7.2:70789021-70789040 MS.gene040467:intron 45.0%
!! GAATGTATAGGTGCTGGAGT+TGG - chr7.2:70789339-70789358 MS.gene040467:intron 45.0%
!! TAAGACTCTCTGAAGCATCC+GGG + chr7.2:70788934-70788953 None:intergenic 45.0%
!!! GCTGGTGTTATTTTAGCCAC+CGG - chr7.2:70788893-70788912 MS.gene040467:CDS 45.0%
!! TGAAATAATATAAATTTAAA+TGG - chr7.2:70790178-70790197 MS.gene040467:CDS 5.0%
!!! AACAAAAAATATATTTTTTT+CGG + chr7.2:70788858-70788877 None:intergenic 5.0%
!!! TATTAAATCATATTATATTT+TGG - chr7.2:70789952-70789971 MS.gene040467:intron 5.0%
ACTCCGGTAGGGATTGGAAT+TGG - chr7.2:70790378-70790397 MS.gene040467:CDS 50.0%
CATGGTCATGCCTCTACAGA+TGG - chr7.2:70789163-70789182 MS.gene040467:intron 50.0%
CGTGGCTATGTTCTCTGCTA+TGG - chr7.2:70789006-70789025 MS.gene040467:intron 50.0%
CTTCTGCGGCTGTTAGTGTT+GGG + chr7.2:70788694-70788713 None:intergenic 50.0%
TTGACTACTCCGGTAGGGAT+TGG - chr7.2:70790372-70790391 MS.gene040467:CDS 50.0%
! TGCAGCTACGAGTGGCTTTA+TGG + chr7.2:70789425-70789444 None:intergenic 50.0%
!! CTTTTTGAAGGCATGGGGCT+TGG - chr7.2:70789460-70789479 MS.gene040467:intron 50.0%
CCAACACTAACAGCCGCAGA+AGG - chr7.2:70788692-70788711 MS.gene040467:CDS 55.0%
CCTTCTGCGGCTGTTAGTGT+TGG + chr7.2:70788695-70788714 None:intergenic 55.0%
CGGTTTCGTTCATGTGCTCC+CGG - chr7.2:70788913-70788932 MS.gene040467:CDS 55.0%
GAGCACATGAACGAAACCGG+TGG + chr7.2:70788912-70788931 None:intergenic 55.0%
GCATCACACGGTCATGCACA+TGG - chr7.2:70789145-70789164 MS.gene040467:intron 55.0%
! CGGGAGCACATGAACGAAAC+CGG + chr7.2:70788915-70788934 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 70788674 70790629 70788674 ID=MS.gene040467
chr7.2 mRNA 70788674 70790629 70788674 ID=MS.gene040467.t1;Parent=MS.gene040467
chr7.2 exon 70790081 70790629 70790081 ID=MS.gene040467.t1.exon1;Parent=MS.gene040467.t1
chr7.2 CDS 70790081 70790629 70790081 ID=cds.MS.gene040467.t1;Parent=MS.gene040467.t1
chr7.2 exon 70789805 70789954 70789805 ID=MS.gene040467.t1.exon2;Parent=MS.gene040467.t1
chr7.2 CDS 70789805 70789954 70789805 ID=cds.MS.gene040467.t1;Parent=MS.gene040467.t1
chr7.2 exon 70788674 70788979 70788674 ID=MS.gene040467.t1.exon3;Parent=MS.gene040467.t1
chr7.2 CDS 70788674 70788979 70788674 ID=cds.MS.gene040467.t1;Parent=MS.gene040467.t1
Gene Sequence

>MS.gene040467

ATGATATTCCTCATAATCCCAACACTAACAGCCGCAGAAGGTACATGTGATGAAAAAGATGAAGATAGGAACAAAGCCAAAGCCCTTGTTTACAAGATAGCAGCTTTCGCATCAATACTAGTTGCAAGTGCAATCGGTGTTTGTATCCCTTTTCTCGGCAAAGTGATACCTGCATTAAGCCCCGAAAAAAATATATTTTTTGTTATCAAAGCTTTTGCAGCTGGTGTTATTTTAGCCACCGGTTTCGTTCATGTGCTCCCGGATGCTTCAGAGAGTCTTAATTCACCTTGTTTAAAGGATCATCCTTGGGGTGATTTTCCATTAGCCGAATTCGTGGCTATGTTCTCTGCTATGGGGACTCTTTTGATGGATATTTATGCCACTGCTTATTTTCAAAAACGTAATTCAAAAAGTGCATCTGTACACCAGAATGATGTAGAGCATGAAGGACAAGTGCATGTTCATACACATGCATCACACGGTCATGCACATGGTCATGCCTCTACAGATGGGTCATCAGAACTTCTTCGCCATAGAGTTATATCACAGGTAAAACTAAAGTATCATATCATATATATAAAAATTTAATTACTATGTACCATGGTGTTCAATTACATAGAAAAACTATGTACCGTGATTTTAAGTTTTCAACAATTGATTGTTTTGAATGTATAGGTGCTGGAGTTGGGTATTGTTATTCATTCGGTTATAATAGGAATTTCTCTCGGTGCTTCAGAGAATGCTAAGACCATAAAGCCACTCGTAGCTGCATTGACTTTTCATCAACTTTTTGAAGGCATGGGGCTTGGATGTTGTATAACCCAGGTACTCTAATTGTATCAAGTTACTTGTGACTGTACAGGAAACCGTTTTTGTTTACTTTCCAGTAATTAACAATCATGTATTTTCTATGGTTAGTGTGAAACATGAAAGAAACTAAGTAAATATGAATTGACTATAATTAGTTGGTATTTTTCAAACTTTGGTTTTCTTTTTTTCTTTTTTTGACAAGAACTTTGGTTTTCTTTATCATGGTTCACATATACGTAATGTGTACTTTTCATCACACTTTAACCTATAAAGCTAAGTTTCTTTTTGTTTTCGGCCAAAATATAAAGATAAGATACTTAGTACTTAATTTATTTGACATATTTGTTGATTTTTCACAAGACATCTTATTTACTCTTGAACTATATATTTATGACCAATGCATTAGCTGGATCGAAAGATGCCAAACTCCCTTATTAAATCCAATTTAGTATGTTTAGTTTTGGAATTTATTAAATCATATTATATTTTGGAACTCTGACTCTTTTATTCTCTTACTCTTTTTGTTTTTTGCCAAACATCATTTTTTAGTATGCATTTCTTAACTCTCAAAAAATAATTTAAGGTTTCACACATATCATCATTTTTTGCATGATATCTAAAGTTTTATAATTTGAACTATGGATATCATGGAATCACCATCTTAAGAATATACTATAAAAATGATTTTGATTCTTGAAATAATATAAATTTAAATGGCAAACAAAACTGATTCCCACAAGTTATGTGTTTTCTATATTTTAAAAATCTTTTGTGCCCTAATATACAAGAAAAGATCAACCTAAATTGTTTGTTAACTTATTGGAAATGCAATCATTGCAGGCAAATTTCAAGAATGTATCTATTGCAATCATGGTCTTGTTCTTTTCTTTGACTACTCCGGTAGGGATTGGAATTGGTCTAGGGATTAGCAGTGTTTATGATGAGAACAGTCCTAAGGCTCTTATTGTTGAAGGAATCTTCAATGCAGCTTCAGCCGGAATCTTAATTTATATGGCACTTGTTGATCTTCTTGCTGCTGATTTTTTTAACTCAAAGATGCAAAATAGTAAAAGACTCCTATTAGGATGCATTCTATCTCTTGTACTTGGAGCCGGTTGCATGTCTCTTTTAGCCTTATGGGCTTAG
Protein sequence

>MS.gene040467.t1

MIFLIIPTLTAAEGTCDEKDEDRNKAKALVYKIAAFASILVASAIGVCIPFLGKVIPALSPEKNIFFVIKAFAAGVILATGFVHVLPDASESLNSPCLKDHPWGDFPLAEFVAMFSAMGTLLMDIYATAYFQKRNSKSASVHQNDVEHEGQVHVHTHASHGHAHGHASTDGSSELLRHRVISQVLELGIVIHSVIIGISLGASENAKTIKPLVAALTFHQLFEGMGLGCCITQANFKNVSIAIMVLFFSLTTPVGIGIGLGISSVYDENSPKALIVEGIFNAASAGILIYMALVDLLAADFFNSKMQNSKRLLLGCILSLVLGAGCMSLLALWA