Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04049.t1 | XP_013460158.1 | 97.5 | 603 | 15 | 0 | 1 | 603 | 18 | 620 | 0.00E+00 | 1202.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04049.t1 | A7LXU3 | 32.5 | 652 | 363 | 20 | 8 | 602 | 30 | 661 | 6.5e-84 | 313.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04049.t1 | A0A072UWG8 | 97.5 | 603 | 15 | 0 | 1 | 603 | 18 | 620 | 0.0e+00 | 1202.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene04049 | MS.gene044157 | PPI |
| MS.gene04049 | MS.gene03078 | PPI |
| MS.gene71046 | MS.gene04049 | PPI |
| MS.gene04049 | MS.gene88756 | PPI |
| MS.gene04049 | MS.gene04462 | PPI |
| MS.gene74550 | MS.gene04049 | PPI |
| MS.gene04049 | MS.gene003292 | PPI |
| MS.gene25841 | MS.gene04049 | PPI |
| MS.gene70763 | MS.gene04049 | PPI |
| MS.gene05603 | MS.gene04049 | PPI |
| MS.gene43773 | MS.gene04049 | PPI |
| MS.gene04049 | MS.gene04573 | PPI |
| MS.gene02092 | MS.gene04049 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04049.t1 | MTR_3g462820 | 97.512 | 603 | 15 | 0 | 1 | 603 | 18 | 620 | 0.0 | 1217 |
| MS.gene04049.t1 | MTR_5g069800 | 74.500 | 600 | 151 | 2 | 1 | 598 | 1 | 600 | 0.0 | 947 |
| MS.gene04049.t1 | MTR_5g069740 | 74.167 | 600 | 141 | 3 | 1 | 598 | 1 | 588 | 0.0 | 922 |
| MS.gene04049.t1 | MTR_6g028090 | 58.893 | 596 | 242 | 3 | 5 | 599 | 28 | 621 | 0.0 | 734 |
| MS.gene04049.t1 | MTR_3g079750 | 58.487 | 595 | 244 | 3 | 5 | 598 | 28 | 620 | 0.0 | 726 |
| MS.gene04049.t1 | MTR_6g028100 | 58.487 | 595 | 244 | 3 | 5 | 598 | 28 | 620 | 0.0 | 724 |
| MS.gene04049.t1 | MTR_2g030000 | 57.815 | 595 | 248 | 3 | 5 | 598 | 30 | 622 | 0.0 | 721 |
| MS.gene04049.t1 | MTR_6g028120 | 58.319 | 595 | 245 | 3 | 5 | 598 | 9 | 601 | 0.0 | 717 |
| MS.gene04049.t1 | MTR_7g086030 | 57.479 | 595 | 250 | 3 | 5 | 598 | 4 | 596 | 0.0 | 712 |
| MS.gene04049.t1 | MTR_7g086030 | 57.479 | 595 | 250 | 3 | 5 | 598 | 29 | 621 | 0.0 | 712 |
| MS.gene04049.t1 | MTR_6g028110 | 57.311 | 595 | 251 | 3 | 5 | 598 | 29 | 621 | 0.0 | 712 |
| MS.gene04049.t1 | MTR_6g028110 | 57.311 | 595 | 251 | 3 | 5 | 598 | 29 | 621 | 0.0 | 711 |
| MS.gene04049.t1 | MTR_7g086010 | 56.757 | 444 | 180 | 2 | 5 | 438 | 29 | 470 | 0.0 | 525 |
| MS.gene04049.t1 | MTR_3g074060 | 27.332 | 611 | 336 | 22 | 5 | 572 | 44 | 589 | 4.69e-42 | 162 |
| MS.gene04049.t1 | MTR_5g062650 | 28.000 | 600 | 349 | 22 | 5 | 572 | 50 | 598 | 4.21e-41 | 159 |
| MS.gene04049.t1 | MTR_5g062430 | 27.769 | 605 | 341 | 23 | 5 | 572 | 50 | 595 | 2.01e-40 | 157 |
| MS.gene04049.t1 | MTR_5g062320 | 27.197 | 603 | 347 | 23 | 5 | 572 | 48 | 593 | 9.25e-40 | 155 |
| MS.gene04049.t1 | MTR_5g062370 | 27.032 | 603 | 348 | 24 | 5 | 572 | 50 | 595 | 1.75e-39 | 155 |
| MS.gene04049.t1 | MTR_7g109390 | 26.242 | 644 | 355 | 28 | 12 | 602 | 49 | 625 | 1.14e-37 | 149 |
| MS.gene04049.t1 | MTR_4g094285 | 25.041 | 603 | 354 | 21 | 5 | 572 | 54 | 593 | 8.10e-36 | 144 |
| MS.gene04049.t1 | MTR_5g062370 | 26.644 | 593 | 343 | 24 | 5 | 562 | 50 | 585 | 9.79e-36 | 142 |
| MS.gene04049.t1 | MTR_2g008240 | 26.744 | 602 | 331 | 26 | 12 | 572 | 62 | 594 | 4.85e-33 | 135 |
| MS.gene04049.t1 | MTR_1g087240 | 24.691 | 648 | 363 | 28 | 11 | 602 | 43 | 621 | 6.04e-33 | 135 |
| MS.gene04049.t1 | MTR_2g034720 | 25.710 | 599 | 352 | 26 | 5 | 572 | 41 | 577 | 5.91e-32 | 132 |
| MS.gene04049.t1 | MTR_5g030860 | 26.623 | 616 | 337 | 30 | 5 | 572 | 42 | 590 | 7.26e-29 | 122 |
| MS.gene04049.t1 | MTR_1g106860 | 25.507 | 592 | 369 | 23 | 5 | 572 | 38 | 581 | 8.22e-27 | 116 |
| MS.gene04049.t1 | MTR_5g069850 | 70.690 | 58 | 17 | 0 | 528 | 585 | 1 | 58 | 9.42e-24 | 95.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04049.t1 | AT3G47000 | 72.454 | 599 | 161 | 3 | 3 | 599 | 8 | 604 | 0.0 | 934 |
| MS.gene04049.t1 | AT3G47040 | 71.452 | 599 | 169 | 2 | 3 | 600 | 8 | 605 | 0.0 | 922 |
| MS.gene04049.t1 | AT3G47040 | 68.590 | 624 | 169 | 3 | 3 | 600 | 8 | 630 | 0.0 | 908 |
| MS.gene04049.t1 | AT3G47050 | 71.189 | 597 | 168 | 3 | 4 | 599 | 9 | 602 | 0.0 | 892 |
| MS.gene04049.t1 | AT3G47010 | 68.289 | 596 | 187 | 2 | 4 | 598 | 10 | 604 | 0.0 | 884 |
| MS.gene04049.t1 | AT3G47010 | 68.121 | 596 | 187 | 3 | 4 | 598 | 10 | 603 | 0.0 | 876 |
| MS.gene04049.t1 | AT3G47040 | 66.456 | 632 | 177 | 5 | 3 | 600 | 8 | 638 | 0.0 | 875 |
| MS.gene04049.t1 | AT3G47000 | 74.661 | 442 | 112 | 0 | 3 | 444 | 8 | 449 | 0.0 | 726 |
| MS.gene04049.t1 | AT5G04885 | 58.221 | 596 | 245 | 4 | 4 | 598 | 46 | 638 | 0.0 | 726 |
| MS.gene04049.t1 | AT5G04885 | 58.221 | 596 | 245 | 4 | 4 | 598 | 29 | 621 | 0.0 | 725 |
| MS.gene04049.t1 | AT5G04885 | 58.221 | 596 | 245 | 4 | 4 | 598 | 29 | 621 | 0.0 | 725 |
| MS.gene04049.t1 | AT3G47040 | 73.077 | 442 | 119 | 0 | 3 | 444 | 8 | 449 | 0.0 | 709 |
| MS.gene04049.t1 | AT5G20950 | 57.550 | 596 | 249 | 4 | 5 | 599 | 104 | 696 | 0.0 | 688 |
| MS.gene04049.t1 | AT5G20950 | 57.550 | 596 | 249 | 4 | 5 | 599 | 26 | 618 | 0.0 | 688 |
| MS.gene04049.t1 | AT5G20950 | 57.550 | 596 | 249 | 4 | 5 | 599 | 26 | 618 | 0.0 | 688 |
| MS.gene04049.t1 | AT3G47010 | 70.522 | 441 | 130 | 0 | 4 | 444 | 10 | 450 | 0.0 | 687 |
| MS.gene04049.t1 | AT5G20940 | 55.966 | 595 | 256 | 4 | 5 | 598 | 32 | 621 | 0.0 | 662 |
| MS.gene04049.t1 | AT3G47000 | 71.562 | 429 | 118 | 3 | 173 | 599 | 1 | 427 | 0.0 | 657 |
| MS.gene04049.t1 | AT3G47010 | 66.276 | 427 | 141 | 3 | 173 | 598 | 1 | 425 | 0.0 | 613 |
| MS.gene04049.t1 | AT3G47050 | 72.849 | 372 | 101 | 0 | 4 | 375 | 9 | 380 | 0.0 | 586 |
| MS.gene04049.t1 | AT3G62710 | 47.528 | 627 | 280 | 14 | 5 | 598 | 38 | 648 | 0.0 | 559 |
| MS.gene04049.t1 | AT5G49360 | 25.394 | 634 | 373 | 24 | 9 | 600 | 53 | 628 | 1.54e-35 | 143 |
| MS.gene04049.t1 | AT1G02640 | 26.710 | 614 | 316 | 27 | 11 | 572 | 50 | 581 | 1.58e-33 | 137 |
| MS.gene04049.t1 | AT3G19620 | 25.429 | 641 | 364 | 29 | 13 | 600 | 49 | 628 | 1.83e-33 | 136 |
| MS.gene04049.t1 | AT5G64570 | 26.123 | 601 | 335 | 24 | 12 | 572 | 66 | 597 | 7.12e-33 | 135 |
| MS.gene04049.t1 | AT5G09730 | 25.691 | 615 | 334 | 26 | 5 | 572 | 49 | 587 | 1.79e-30 | 127 |
| MS.gene04049.t1 | AT5G10560 | 26.766 | 538 | 330 | 21 | 85 | 572 | 78 | 601 | 1.83e-30 | 127 |
| MS.gene04049.t1 | AT5G64570 | 25.410 | 610 | 346 | 24 | 12 | 581 | 66 | 606 | 1.55e-29 | 124 |
| MS.gene04049.t1 | AT1G78060 | 25.753 | 598 | 350 | 24 | 11 | 572 | 44 | 583 | 1.86e-29 | 124 |
| MS.gene04049.t1 | AT5G64570 | 27.056 | 462 | 289 | 20 | 134 | 572 | 3 | 439 | 1.51e-25 | 112 |
Find 149 sgRNAs with CRISPR-Local
Find 257 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTTGTTTCCTCTTGGTTT+TGG | 0.130723 | 3.3:-50397944 | MS.gene04049:CDS |
| AAGATGACTTCCATTGTTTC+TGG | 0.168871 | 3.3:-50399980 | MS.gene04049:CDS |
| CCAGGGAGTTTCAACCATTA+TGG | 0.249679 | 3.3:-50399629 | MS.gene04049:CDS |
| ACATTGGTTGTTCTGATATC+TGG | 0.250837 | 3.3:-50398163 | MS.gene04049:CDS |
| AGCAAAGATCTGTCACTTAA+TGG | 0.265440 | 3.3:+50399049 | None:intergenic |
| GCTGATTTGGTTAGAAGAAT+TGG | 0.279268 | 3.3:-50400454 | MS.gene04049:CDS |
| TGAGAACTCGTTACGTTCTA+TGG | 0.306943 | 3.3:+50398303 | None:intergenic |
| TAGCAACAGTGCGTTCAATT+TGG | 0.313170 | 3.3:+50401833 | None:intergenic |
| TTGACCTCTTTAATTGAATC+AGG | 0.314382 | 3.3:-50399151 | MS.gene04049:CDS |
| TTTCTATAGAGATGCTGATT+TGG | 0.330050 | 3.3:-50400467 | MS.gene04049:intron |
| AGATTTCGGTTAAAAGAAAA+TGG | 0.333795 | 3.3:+50399566 | None:intergenic |
| CTTGGGATACCTCTCATATA+TGG | 0.334109 | 3.3:-50400658 | MS.gene04049:CDS |
| ACGAGCTTCAATGGGTTCAT+TGG | 0.350130 | 3.3:+50401909 | None:intergenic |
| GTCATCAGATTGGGCTGATA+TGG | 0.359012 | 3.3:-50400716 | MS.gene04049:CDS |
| CATGGTAATAACAGTGTCTA+TGG | 0.375656 | 3.3:-50400622 | MS.gene04049:CDS |
| CTTGTTGCTGCTTGGTTGCC+AGG | 0.381226 | 3.3:-50398094 | MS.gene04049:CDS |
| CGAGCTTCAATGGGTTCATT+GGG | 0.388791 | 3.3:+50401910 | None:intergenic |
| GGAATCACAGATGTAATCTT+TGG | 0.389084 | 3.3:-50398058 | MS.gene04049:CDS |
| TTTCCGCACAATGTTGGCCT+TGG | 0.390287 | 3.3:-50400589 | MS.gene04049:CDS |
| AGCTCCTTATGCCGAGTCAT+TGG | 0.393889 | 3.3:-50398257 | MS.gene04049:CDS |
| GTCCTTGATACGAGCTTCAA+TGG | 0.394933 | 3.3:+50401900 | None:intergenic |
| TGGGAAATGCAGTCTAAATA+AGG | 0.395296 | 3.3:+50399649 | None:intergenic |
| GCTAAGAGAATTCTTGTTAC+CGG | 0.398668 | 3.3:-50398827 | MS.gene04049:CDS |
| TGTGAACCTTTGTTTCCTCT+TGG | 0.400222 | 3.3:-50397950 | MS.gene04049:CDS |
| CGCAGGTGATGGTGGCTGTC+AGG | 0.400858 | 3.3:-50399195 | MS.gene04049:intron |
| GGAACACATGCTGATAATCT+TGG | 0.401471 | 3.3:-50398806 | MS.gene04049:CDS |
| ATAGGAAGCATACTAAGTTC+TGG | 0.403935 | 3.3:-50400766 | MS.gene04049:intron |
| GATGACAGTGCATTCTCAAA+TGG | 0.407895 | 3.3:+50400733 | None:intergenic |
| CTCTTGTTCAATGGAAGAAA+AGG | 0.416697 | 3.3:+50398851 | None:intergenic |
| CTCTTAGCACTCTTGTTCAA+TGG | 0.419646 | 3.3:+50398842 | None:intergenic |
| GCCTACCTTCCAGCCACAAA+AGG | 0.425345 | 3.3:+50399917 | None:intergenic |
| TATGGAATTGATGCAGTTCA+TGG | 0.433577 | 3.3:-50400640 | MS.gene04049:CDS |
| TTCACCTGATTCAATTAAAG+AGG | 0.444760 | 3.3:+50399147 | None:intergenic |
| ATGACAGTGCATTCTCAAAT+GGG | 0.446083 | 3.3:+50400734 | None:intergenic |
| TCCATTGTTTCTGGTTTGCA+AGG | 0.450032 | 3.3:-50399971 | MS.gene04049:CDS |
| GCTCCTTATGCCGAGTCATT+GGG | 0.454124 | 3.3:-50398256 | MS.gene04049:CDS |
| TCATTTGACCAATCTTCTCC+TGG | 0.455549 | 3.3:+50401857 | None:intergenic |
| ATCTCCTCTGCCGTCAATGC+TGG | 0.456108 | 3.3:-50399305 | MS.gene04049:CDS |
| AGAATGCACTGTCATCAGAT+TGG | 0.456347 | 3.3:-50400726 | MS.gene04049:CDS |
| GCGTCCTATACTAGCTGGAA+TGG | 0.461450 | 3.3:-50399607 | MS.gene04049:CDS |
| AAACAATGGAAGTCATCTTT+CGG | 0.464872 | 3.3:+50399984 | None:intergenic |
| GATTGGGCTGATATGGTAGA+TGG | 0.465157 | 3.3:-50400709 | MS.gene04049:CDS |
| TAATATCAGTTCCACGGAAA+GGG | 0.465753 | 3.3:+50398212 | None:intergenic |
| TCACCCAATGACTCGGCATA+AGG | 0.469461 | 3.3:+50398253 | None:intergenic |
| GATATCAGAACAACCAATGT+TGG | 0.476352 | 3.3:+50398166 | None:intergenic |
| TTGGATTTCAATGTGGAGGT+TGG | 0.482406 | 3.3:-50398787 | MS.gene04049:CDS |
| GCATCATCAATTCTGCTCAT+TGG | 0.486327 | 3.3:+50399121 | None:intergenic |
| ACTATATTTCCGCACAATGT+TGG | 0.491225 | 3.3:-50400595 | MS.gene04049:CDS |
| TTATTTAGACTGCATTTCCC+AGG | 0.494864 | 3.3:-50399647 | MS.gene04049:CDS |
| CATGTCAATTCCAGCATTGA+CGG | 0.495441 | 3.3:+50399295 | None:intergenic |
| CCATAATGGTTGAAACTCCC+TGG | 0.496128 | 3.3:+50399629 | None:intergenic |
| TTGTGATTTCCGACTGGGAA+GGG | 0.496339 | 3.3:-50399373 | MS.gene04049:CDS |
| TCTTTCACGCATGACTCTCC+AGG | 0.497082 | 3.3:-50401875 | MS.gene04049:CDS |
| TTGAGAGTAAAGTTTGCTGC+TGG | 0.502814 | 3.3:-50399085 | MS.gene04049:CDS |
| ATGACTCTCCAGGAGAAGAT+TGG | 0.504059 | 3.3:-50401865 | MS.gene04049:CDS |
| TCATTTGCAATTGTAGCCGT+TGG | 0.508906 | 3.3:-50398283 | MS.gene04049:CDS |
| TCCTTGATACGAGCTTCAAT+GGG | 0.510901 | 3.3:+50401901 | None:intergenic |
| ACGCTTCGAAACCAAGTGAC+TGG | 0.511251 | 3.3:+50398010 | None:intergenic |
| CGCTTCGAAACCAAGTGACT+GGG | 0.512279 | 3.3:+50398011 | None:intergenic |
| GCTAGTATAGGACGCCATAA+TGG | 0.513858 | 3.3:+50399615 | None:intergenic |
| GCGCCCATTCCAGCTAGTAT+AGG | 0.516093 | 3.3:+50399603 | None:intergenic |
| TAGACGCTCTTGTTGCTGCT+TGG | 0.516936 | 3.3:-50398102 | MS.gene04049:CDS |
| GGAGTTGACCTTTGAAGTCA+TGG | 0.522741 | 3.3:+50398032 | None:intergenic |
| TTATGGCGTCCTATACTAGC+TGG | 0.523575 | 3.3:-50399612 | MS.gene04049:CDS |
| ATATCAGAACAACCAATGTT+GGG | 0.524536 | 3.3:+50398167 | None:intergenic |
| GCTAGATTCAGTTGGTTGCA+AGG | 0.525878 | 3.3:-50399029 | MS.gene04049:intron |
| ATTCCATCTCCTTCACTACC+TGG | 0.526085 | 3.3:+50398076 | None:intergenic |
| ACCCATTGAAGCTCGTATCA+AGG | 0.527158 | 3.3:-50401902 | MS.gene04049:CDS |
| GGAAGCAGTTCGAAAGTCGT+TGG | 0.527661 | 3.3:-50398906 | MS.gene04049:CDS |
| AAGGTCAACTCCCAGTCACT+TGG | 0.528725 | 3.3:-50398021 | MS.gene04049:CDS |
| TCCATCACCAACAAAATGCT+TGG | 0.529596 | 3.3:+50399744 | None:intergenic |
| TTCGGTTAAAAGAAAATGGT+CGG | 0.530265 | 3.3:+50399570 | None:intergenic |
| ACTCATAAGGGTGTGAATGA+AGG | 0.530326 | 3.3:-50399718 | MS.gene04049:CDS |
| ATGTTGGCCTTGGAGCTACT+AGG | 0.530559 | 3.3:-50400579 | MS.gene04049:intron |
| TGGTGATGGAGGTACTCATA+AGG | 0.530719 | 3.3:-50399731 | MS.gene04049:CDS |
| CGTCCTATACTAGCTGGAAT+GGG | 0.531709 | 3.3:-50399606 | MS.gene04049:CDS |
| AAGATTATCAGCATGTGTTC+CGG | 0.531909 | 3.3:+50398808 | None:intergenic |
| GAATGCACTGTCATCAGATT+GGG | 0.533604 | 3.3:-50400725 | MS.gene04049:CDS |
| CCTACCTTCCAGCCACAAAA+GGG | 0.540848 | 3.3:+50399918 | None:intergenic |
| GAGAGGTCTTTGATGACAGA+AGG | 0.541378 | 3.3:+50401808 | None:intergenic |
| AGCCGTCGGAGCTGAAACAC+AGG | 0.542683 | 3.3:-50398356 | MS.gene04049:CDS |
| AGATCTTTGCTAGATTCAGT+TGG | 0.542932 | 3.3:-50399037 | MS.gene04049:CDS |
| TCAGCTCTAGAGTCTAGACT+TGG | 0.545525 | 3.3:-50400676 | MS.gene04049:CDS |
| GTCATCAAAGACCTCTCCAT+TGG | 0.555486 | 3.3:-50401802 | MS.gene04049:intron |
| TTTGTGATTTCCGACTGGGA+AGG | 0.559525 | 3.3:-50399374 | MS.gene04049:CDS |
| GGAGAGTCATGCGTGAAAGA+AGG | 0.559868 | 3.3:+50401878 | None:intergenic |
| ATAATATCAGTTCCACGGAA+AGG | 0.560019 | 3.3:+50398211 | None:intergenic |
| GTGGAGGTTGGACTAAAACT+TGG | 0.560572 | 3.3:-50398775 | MS.gene04049:CDS |
| CATGCAGCAACACTATCACT+TGG | 0.561072 | 3.3:+50397971 | None:intergenic |
| GGTGATGGAGGTACTCATAA+GGG | 0.569275 | 3.3:-50399730 | MS.gene04049:CDS |
| TGAATTGTCACCCAATGACT+CGG | 0.570493 | 3.3:+50398246 | None:intergenic |
| TAGAAGAATTGGAGCTGCAA+CGG | 0.571117 | 3.3:-50400443 | MS.gene04049:CDS |
| TTTGGTAGCCATGACTTCAA+AGG | 0.572278 | 3.3:-50398040 | MS.gene04049:CDS |
| GACCGACTTTGTAAACCTCA+CGG | 0.574208 | 3.3:-50399347 | MS.gene04049:CDS |
| AACCTGTGTTTCAGCTCCGA+CGG | 0.574303 | 3.3:+50398354 | None:intergenic |
| AATATTTACGCAGGTGATGG+TGG | 0.574548 | 3.3:-50399203 | MS.gene04049:intron |
| TACAGGTATGCAAAGATCCT+AGG | 0.574564 | 3.3:-50400051 | MS.gene04049:intron |
| ATTCTTGTATAAGCAATCCA+TGG | 0.574794 | 3.3:+50401933 | None:intergenic |
| CAATGCCTTACCGCGACACA+AGG | 0.575221 | 3.3:+50400379 | None:intergenic |
| AATTCCAGCATTGACGGCAG+AGG | 0.576589 | 3.3:+50399301 | None:intergenic |
| GCGCTTGAAGTTAAAGCAAG+TGG | 0.579980 | 3.3:-50400421 | MS.gene04049:CDS |
| AAAACTTGGTATGGTGCTAG+TGG | 0.580683 | 3.3:-50398761 | MS.gene04049:CDS |
| ACCCGTGAGGTTTACAAAGT+CGG | 0.583206 | 3.3:+50399345 | None:intergenic |
| ACCGACTTTGTAAACCTCAC+GGG | 0.588431 | 3.3:-50399346 | MS.gene04049:CDS |
| TATTTAGACTGCATTTCCCA+GGG | 0.588891 | 3.3:-50399646 | MS.gene04049:CDS |
| ACCTTGCAAACCAGAAACAA+TGG | 0.595678 | 3.3:+50399970 | None:intergenic |
| CATAATGGTTGAAACTCCCT+GGG | 0.597849 | 3.3:+50399630 | None:intergenic |
| AGAGGTCTTTGATGACAGAA+GGG | 0.598226 | 3.3:+50401809 | None:intergenic |
| AGCTTATAATATCAGTTCCA+CGG | 0.600401 | 3.3:+50398206 | None:intergenic |
| GAGCTCACAATCCCTTTCCG+TGG | 0.602469 | 3.3:-50398223 | MS.gene04049:CDS |
| CCGCCACAAGGACATAAACA+TGG | 0.603763 | 3.3:-50399944 | MS.gene04049:CDS |
| GGTTGGACTAAAACTTGGTA+TGG | 0.605118 | 3.3:-50398770 | MS.gene04049:CDS |
| TTGCAAGGTCAGCCGCCACA+AGG | 0.613955 | 3.3:-50399956 | MS.gene04049:CDS |
| GCTTGGTTGCCAGGTAGTGA+AGG | 0.615038 | 3.3:-50398085 | MS.gene04049:CDS |
| AGCCGTGGCTCTAAAACTAA+CGG | 0.616971 | 3.3:+50398136 | None:intergenic |
| TAACTTTGCTCCTTGTGTCG+CGG | 0.620843 | 3.3:-50400389 | MS.gene04049:intron |
| AGCCGACAAAATCCCAACAT+TGG | 0.621136 | 3.3:-50398179 | MS.gene04049:CDS |
| GGTATGCAAAGATCCTAGGT+GGG | 0.622672 | 3.3:-50400047 | MS.gene04049:CDS |
| CTTGGTATGGTGCTAGTGGG+AGG | 0.629170 | 3.3:-50398757 | MS.gene04049:CDS |
| AATCTTGGATTTCAATGTGG+AGG | 0.629362 | 3.3:-50398791 | MS.gene04049:CDS |
| TATCCATGTTTATGTCCTTG+TGG | 0.630539 | 3.3:+50399941 | None:intergenic |
| TTGCCAGGTAGTGAAGGAGA+TGG | 0.631782 | 3.3:-50398079 | MS.gene04049:CDS |
| TCGGTCGAGCCCTTCCCAGT+CGG | 0.632697 | 3.3:+50399364 | None:intergenic |
| GCTCCAAGGCCAACATTGTG+CGG | 0.636775 | 3.3:+50400586 | None:intergenic |
| TCATAGCATCTTCCCCACCT+AGG | 0.637527 | 3.3:+50400034 | None:intergenic |
| AGGTATGCAAAGATCCTAGG+TGG | 0.641153 | 3.3:-50400048 | MS.gene04049:CDS |
| CAGCTCTAGAGTCTAGACTT+GGG | 0.642393 | 3.3:-50400675 | MS.gene04049:CDS |
| GCCACATAGAGATCTTGCAC+GGG | 0.645982 | 3.3:-50398927 | MS.gene04049:CDS |
| ATACTAACCTAGTAGCTCCA+AGG | 0.653710 | 3.3:+50400572 | None:intergenic |
| CCAAAACCAAGAGGAAACAA+AGG | 0.654034 | 3.3:+50397944 | None:intergenic |
| GATGCTGTTAAAGCAGCCGT+CGG | 0.654191 | 3.3:-50398370 | MS.gene04049:CDS |
| GCTAGTGGGAGGATCACAGT+TGG | 0.655699 | 3.3:-50398746 | MS.gene04049:intron |
| AAACTTGGTATGGTGCTAGT+GGG | 0.658815 | 3.3:-50398760 | MS.gene04049:CDS |
| TCCCGTGCAAGATCTCTATG+TGG | 0.660763 | 3.3:+50398926 | None:intergenic |
| GTATGCAAAGATCCTAGGTG+GGG | 0.661100 | 3.3:-50400046 | MS.gene04049:CDS |
| AGCCACATAGAGATCTTGCA+CGG | 0.661216 | 3.3:-50398928 | MS.gene04049:CDS |
| GGAAGCATACTAAGTTCTGG+AGG | 0.661489 | 3.3:-50400763 | MS.gene04049:CDS |
| GATAATCTTGGATTTCAATG+TGG | 0.662758 | 3.3:-50398794 | MS.gene04049:CDS |
| CGTCAATGCTGGAATTGACA+TGG | 0.663099 | 3.3:-50399294 | MS.gene04049:intron |
| GCATCAATTCCATATATGAG+AGG | 0.665889 | 3.3:+50400649 | None:intergenic |
| TAGTTCAGCCCAAAACCAAG+AGG | 0.669530 | 3.3:+50397935 | None:intergenic |
| CCATGTTTATGTCCTTGTGG+CGG | 0.671755 | 3.3:+50399944 | None:intergenic |
| TGGGGTTACTACCAATGGAG+AGG | 0.672659 | 3.3:+50401791 | None:intergenic |
| GAGGTCTTTGATGACAGAAG+GGG | 0.677985 | 3.3:+50401810 | None:intergenic |
| TCTATCTTTACCAAAAGCCG+TGG | 0.689522 | 3.3:+50398121 | None:intergenic |
| GGCATAAGGAGCTTCACCAA+CGG | 0.690684 | 3.3:+50398267 | None:intergenic |
| TGACAGTGCATTCTCAAATG+GGG | 0.696438 | 3.3:+50400735 | None:intergenic |
| AGACTTAGAGAGAATACACA+TGG | 0.711757 | 3.3:-50399674 | MS.gene04049:CDS |
| TATCGATAATCTGACCCGTG+AGG | 0.757801 | 3.3:+50399332 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAATTTTCATATACTTTA+GGG | - | chr3.3:50398945-50398964 | MS.gene04049:intron | 10.0% |
| !!! | TTATAATTTTCATATACTTT+AGG | - | chr3.3:50398944-50398963 | MS.gene04049:intron | 10.0% |
| !! | ACATATGTTTATTTATTGTA+AGG | - | chr3.3:50401184-50401203 | MS.gene04049:intron | 15.0% |
| !! | ATAACGTATTTATGTAAAAA+TGG | + | chr3.3:50398746-50398765 | None:intergenic | 15.0% |
| !! | ATTTATTTGGTTAAATATAC+AGG | - | chr3.3:50399785-50399804 | MS.gene04049:intron | 15.0% |
| !! | GAGTAAATTCATATAATTTA+AGG | - | chr3.3:50398915-50398934 | MS.gene04049:CDS | 15.0% |
| !! | TAAAAGATATCAATTGTTAT+CGG | + | chr3.3:50400033-50400052 | None:intergenic | 15.0% |
| !!! | AAACTATAATTTGTAGTTTT+TGG | - | chr3.3:50398681-50398700 | MS.gene04049:intron | 15.0% |
| !!! | ATTTTTAAACTGAAATCTTT+TGG | + | chr3.3:50399986-50400005 | None:intergenic | 15.0% |
| !! | AAAAAGATTGACTAAAATGA+TGG | + | chr3.3:50398159-50398178 | None:intergenic | 20.0% |
| !! | AGCTAATATTGCAAAAAATT+TGG | + | chr3.3:50400410-50400429 | None:intergenic | 20.0% |
| !! | ATAAAGGAAAGTGATTTATT+TGG | - | chr3.3:50399772-50399791 | MS.gene04049:intron | 20.0% |
| !! | ATCGTGTTTAGATTATTTAA+AGG | - | chr3.3:50398641-50398660 | MS.gene04049:intron | 20.0% |
| !! | TCGTGTTTAGATTATTTAAA+GGG | - | chr3.3:50398642-50398661 | MS.gene04049:intron | 20.0% |
| !! | TGAATTACAACTTAAACATA+AGG | + | chr3.3:50400068-50400087 | None:intergenic | 20.0% |
| !!! | TAGTTTTTCTTTCAAGATTT+CGG | + | chr3.3:50400304-50400323 | None:intergenic | 20.0% |
| !!! | TATGTTTAAGTTGTAATTCA+GGG | - | chr3.3:50400068-50400087 | MS.gene04049:intron | 20.0% |
| !!! | TGATTATATCTGCATTTTAT+AGG | - | chr3.3:50399069-50399088 | MS.gene04049:CDS | 20.0% |
| !!! | TTATGTTTAAGTTGTAATTC+AGG | - | chr3.3:50400067-50400086 | MS.gene04049:intron | 20.0% |
| !!! | TTATTTTTTTGTGTTGCTTT+AGG | - | chr3.3:50399027-50399046 | MS.gene04049:intron | 20.0% |
| !!! | TTTATTGTATCTTTTGGTAT+AGG | - | chr3.3:50398484-50398503 | MS.gene04049:intron | 20.0% |
| !!! | TTTGACTTTATTGTATCTTT+TGG | - | chr3.3:50398478-50398497 | MS.gene04049:intron | 20.0% |
| ! | ACACTATGATGAAAGATAAT+TGG | + | chr3.3:50400600-50400619 | None:intergenic | 25.0% |
| ! | AGAAAAAATACAGAACAAAC+AGG | + | chr3.3:50401391-50401410 | None:intergenic | 25.0% |
| ! | AGATTTCGGTTAAAAGAAAA+TGG | + | chr3.3:50400290-50400309 | None:intergenic | 25.0% |
| ! | ATCTCATTAGATTTGCATAA+CGG | + | chr3.3:50399316-50399335 | None:intergenic | 25.0% |
| ! | CGTGTTTAGATTATTTAAAG+GGG | - | chr3.3:50398643-50398662 | MS.gene04049:intron | 25.0% |
| ! | CTATTCAATAATATTTACGC+AGG | - | chr3.3:50400641-50400660 | MS.gene04049:CDS | 25.0% |
| ! | CTGCGTAAATATTATTGAAT+AGG | + | chr3.3:50400643-50400662 | None:intergenic | 25.0% |
| ! | GAAATCTTGAAAGAAAAACT+AGG | - | chr3.3:50400303-50400322 | MS.gene04049:intron | 25.0% |
| ! | TCTGAACAATAGTTAAAACA+AGG | - | chr3.3:50399687-50399706 | MS.gene04049:CDS | 25.0% |
| ! | TGGATTTAACAATAAATCGA+AGG | + | chr3.3:50398726-50398745 | None:intergenic | 25.0% |
| ! | TTGGTAAGCTATGATATTTA+TGG | - | chr3.3:50401126-50401145 | MS.gene04049:intron | 25.0% |
| ! | TTTCTGTAACTAGACAATAA+AGG | - | chr3.3:50399756-50399775 | MS.gene04049:CDS | 25.0% |
| !! | AAGCTACATTTTATCACTTT+CGG | + | chr3.3:50401243-50401262 | None:intergenic | 25.0% |
| !! | ATGATAATGCTGCTATAATT+TGG | - | chr3.3:50399334-50399353 | MS.gene04049:CDS | 25.0% |
| !! | GAAAGAAAAACTAGGTTTTA+AGG | - | chr3.3:50400311-50400330 | MS.gene04049:intron | 25.0% |
| !! | TTCTAAGTAAAACTCTGAAA+TGG | + | chr3.3:50398085-50398104 | None:intergenic | 25.0% |
| !!! | AACTTCTTTTTAGTGTATGT+TGG | - | chr3.3:50398565-50398584 | MS.gene04049:intron | 25.0% |
| !!! | ACTTCTTTTTAGTGTATGTT+GGG | - | chr3.3:50398566-50398585 | MS.gene04049:intron | 25.0% |
| !!! | TCTAAGTAAAACTCTGAAAT+GGG | + | chr3.3:50398084-50398103 | None:intergenic | 25.0% |
| AAACAATGGAAGTCATCTTT+CGG | + | chr3.3:50399872-50399891 | None:intergenic | 30.0% | |
| AACATACCAAAACACAAGTA+TGG | - | chr3.3:50401342-50401361 | MS.gene04049:intron | 30.0% | |
| AAGGATTATCCCAGTATTAT+GGG | + | chr3.3:50399624-50399643 | None:intergenic | 30.0% | |
| AATAATATTTACGCAGGTGA+TGG | - | chr3.3:50400647-50400666 | MS.gene04049:CDS | 30.0% | |
| AATGACTGATTAACTATCAC+TGG | - | chr3.3:50400337-50400356 | MS.gene04049:intron | 30.0% | |
| AGCTTATAATATCAGTTCCA+CGG | + | chr3.3:50401650-50401669 | None:intergenic | 30.0% | |
| ATAATACTGGGATAATCCTT+CGG | - | chr3.3:50399624-50399643 | MS.gene04049:CDS | 30.0% | |
| ATATCAGAACAACCAATGTT+GGG | + | chr3.3:50401689-50401708 | None:intergenic | 30.0% | |
| CAAGATTGTTGAACCTAAAA+TGG | + | chr3.3:50401463-50401482 | None:intergenic | 30.0% | |
| CACATGCAAACAATTAATCA+GGG | + | chr3.3:50400884-50400903 | None:intergenic | 30.0% | |
| GATAATCTTGGATTTCAATG+TGG | - | chr3.3:50401059-50401078 | MS.gene04049:intron | 30.0% | |
| GTAAGGTATACAAGTTAATG+TGG | + | chr3.3:50401441-50401460 | None:intergenic | 30.0% | |
| TTCACCTGATTCAATTAAAG+AGG | + | chr3.3:50400709-50400728 | None:intergenic | 30.0% | |
| TTCGGTTAAAAGAAAATGGT+CGG | + | chr3.3:50400286-50400305 | None:intergenic | 30.0% | |
| TTGACCTCTTTAATTGAATC+AGG | - | chr3.3:50400702-50400721 | MS.gene04049:CDS | 30.0% | |
| TTGTTGAACCTAAAATGGTA+AGG | + | chr3.3:50401458-50401477 | None:intergenic | 30.0% | |
| ! | ATTTCACCATACTTGTGTTT+TGG | + | chr3.3:50401351-50401370 | None:intergenic | 30.0% |
| ! | CTTGTATACCTTACCATTTT+AGG | - | chr3.3:50401447-50401466 | MS.gene04049:intron | 30.0% |
| ! | TAAGTATTGTTCGGTTTGTT+TGG | - | chr3.3:50398257-50398276 | MS.gene04049:CDS | 30.0% |
| ! | TAGATTTTGTTCAGAAACCT+TGG | - | chr3.3:50401212-50401231 | MS.gene04049:intron | 30.0% |
| ! | TTGAGTGTGTAAGTATTGTT+CGG | - | chr3.3:50398248-50398267 | MS.gene04049:CDS | 30.0% |
| ! | TTTCTATAGAGATGCTGATT+TGG | - | chr3.3:50399386-50399405 | MS.gene04049:intron | 30.0% |
| ! | TTTTTCTCCGTTGTTAAACT+AGG | - | chr3.3:50401404-50401423 | MS.gene04049:intron | 30.0% |
| !! | AACTCACTTTTATCCAGAAT+CGG | - | chr3.3:50398794-50398813 | MS.gene04049:CDS | 30.0% |
| !! | CTAAGTAAAACTCTGAAATG+GGG | + | chr3.3:50398083-50398102 | None:intergenic | 30.0% |
| !! | TGATTTTGTAAAACCGATTC+TGG | + | chr3.3:50398810-50398829 | None:intergenic | 30.0% |
| !!! | CATTTTAGGTTCAACAATCT+TGG | - | chr3.3:50401461-50401480 | MS.gene04049:intron | 30.0% |
| !!! | GCTGCTTTTACAATATTGTA+GGG | - | chr3.3:50399554-50399573 | MS.gene04049:CDS | 30.0% |
| !!! | TCGTTGGTTTTGTTGAAAAA+TGG | - | chr3.3:50400963-50400982 | MS.gene04049:intron | 30.0% |
| !!! | TGCTGCTTTTACAATATTGT+AGG | - | chr3.3:50399553-50399572 | MS.gene04049:CDS | 30.0% |
| !!! | TTTTTTGTGTTGCTTTAGGT+TGG | - | chr3.3:50399031-50399050 | MS.gene04049:CDS | 30.0% |
| AAGATGACTTCCATTGTTTC+TGG | - | chr3.3:50399873-50399892 | MS.gene04049:intron | 35.0% | |
| AAGATTATCAGCATGTGTTC+CGG | + | chr3.3:50401048-50401067 | None:intergenic | 35.0% | |
| AAGATTGATTGCAGTGTGTT+TGG | - | chr3.3:50401157-50401176 | MS.gene04049:intron | 35.0% | |
| AAGCATTTATGAGACACCTT+AGG | - | chr3.3:50398410-50398429 | MS.gene04049:intron | 35.0% | |
| AATCTTGGATTTCAATGTGG+AGG | - | chr3.3:50401062-50401081 | MS.gene04049:intron | 35.0% | |
| ACGACAACCTAGTTTAACAA+CGG | + | chr3.3:50401414-50401433 | None:intergenic | 35.0% | |
| ACTATATTTCCGCACAATGT+TGG | - | chr3.3:50399258-50399277 | MS.gene04049:intron | 35.0% | |
| AGACTGTTTAGAAGAGCTTA+TGG | - | chr3.3:50398325-50398344 | MS.gene04049:CDS | 35.0% | |
| AGACTTAGAGAGAATACACA+TGG | - | chr3.3:50400179-50400198 | MS.gene04049:intron | 35.0% | |
| AGATCTTTGCTAGATTCAGT+TGG | - | chr3.3:50400816-50400835 | MS.gene04049:intron | 35.0% | |
| ATAATATCAGTTCCACGGAA+AGG | + | chr3.3:50401645-50401664 | None:intergenic | 35.0% | |
| ATCACTTTATCCTGTACTAG+TGG | - | chr3.3:50398893-50398912 | MS.gene04049:CDS | 35.0% | |
| ATGACAGTGCATTCTCAAAT+GGG | + | chr3.3:50399122-50399141 | None:intergenic | 35.0% | |
| ATTATCCCAGTATTATGGGT+AGG | + | chr3.3:50399620-50399639 | None:intergenic | 35.0% | |
| ATTGTTTGCATGTGCCATAA+TGG | - | chr3.3:50400890-50400909 | MS.gene04049:intron | 35.0% | |
| CAATAGTTAAAACAAGGACG+TGG | - | chr3.3:50399693-50399712 | MS.gene04049:CDS | 35.0% | |
| CATCCAAGAAAGTCAAAAAC+TGG | + | chr3.3:50399361-50399380 | None:intergenic | 35.0% | |
| CATGGTAATAACAGTGTCTA+TGG | - | chr3.3:50399231-50399250 | MS.gene04049:intron | 35.0% | |
| CTCTTGTTCAATGGAAGAAA+AGG | + | chr3.3:50401005-50401024 | None:intergenic | 35.0% | |
| GAAGGATTATCCCAGTATTA+TGG | + | chr3.3:50399625-50399644 | None:intergenic | 35.0% | |
| GATATCAGAACAACCAATGT+TGG | + | chr3.3:50401690-50401709 | None:intergenic | 35.0% | |
| GCACATGCAAACAATTAATC+AGG | + | chr3.3:50400885-50400904 | None:intergenic | 35.0% | |
| GCATCAATTCCATATATGAG+AGG | + | chr3.3:50399207-50399226 | None:intergenic | 35.0% | |
| GCTAAGAGAATTCTTGTTAC+CGG | - | chr3.3:50401026-50401045 | MS.gene04049:intron | 35.0% | |
| GGAATCACAGATGTAATCTT+TGG | - | chr3.3:50401795-50401814 | MS.gene04049:intron | 35.0% | |
| GGATAAAGTGATACTTGTGA+AGG | + | chr3.3:50398885-50398904 | None:intergenic | 35.0% | |
| TAATACTGGGATAATCCTTC+GGG | - | chr3.3:50399625-50399644 | MS.gene04049:CDS | 35.0% | |
| TAATATCAGTTCCACGGAAA+GGG | + | chr3.3:50401644-50401663 | None:intergenic | 35.0% | |
| TATCCATGTTTATGTCCTTG+TGG | + | chr3.3:50399915-50399934 | None:intergenic | 35.0% | |
| TATGGAATTGATGCAGTTCA+TGG | - | chr3.3:50399213-50399232 | MS.gene04049:intron | 35.0% | |
| TATTGACAATTGCTGCTGTA+GGG | - | chr3.3:50400455-50400474 | MS.gene04049:CDS | 35.0% | |
| TATTTAGACTGCATTTCCCA+GGG | - | chr3.3:50400207-50400226 | MS.gene04049:intron | 35.0% | |
| TGAATTTACTCCACTAGTAC+AGG | + | chr3.3:50398906-50398925 | None:intergenic | 35.0% | |
| TGATACTTGTGAAGGTTACT+AGG | + | chr3.3:50398877-50398896 | None:intergenic | 35.0% | |
| TGGGAAATGCAGTCTAAATA+AGG | + | chr3.3:50400207-50400226 | None:intergenic | 35.0% | |
| TTATCCCAGTATTATGGGTA+GGG | + | chr3.3:50399619-50399638 | None:intergenic | 35.0% | |
| TTATTGACAATTGCTGCTGT+AGG | - | chr3.3:50400454-50400473 | MS.gene04049:CDS | 35.0% | |
| TTATTTAGACTGCATTTCCC+AGG | - | chr3.3:50400206-50400225 | MS.gene04049:intron | 35.0% | |
| ! | AACCAATGTTGGGATTTTGT+CGG | + | chr3.3:50401679-50401698 | None:intergenic | 35.0% |
| ! | ACATTGGTTGTTCTGATATC+TGG | - | chr3.3:50401690-50401709 | MS.gene04049:intron | 35.0% |
| ! | AGCAAAGATCTGTCACTTAA+TGG | + | chr3.3:50400807-50400826 | None:intergenic | 35.0% |
| ! | ATAGGAAGCATACTAAGTTC+TGG | - | chr3.3:50399087-50399106 | MS.gene04049:CDS | 35.0% |
| ! | ATGGTCAGAATTGATTCTAG+AGG | - | chr3.3:50398602-50398621 | MS.gene04049:intron | 35.0% |
| ! | GTTGGGTTTCAATTTTCGAA+TGG | - | chr3.3:50398583-50398602 | MS.gene04049:intron | 35.0% |
| ! | TAAACATGGATACCCTTTTG+TGG | - | chr3.3:50399923-50399942 | MS.gene04049:CDS | 35.0% |
| !! | CTGCAAAAGAAGTACCATTA+TGG | + | chr3.3:50400907-50400926 | None:intergenic | 35.0% |
| !! | GCTGATTTGGTTAGAAGAAT+TGG | - | chr3.3:50399399-50399418 | MS.gene04049:intron | 35.0% |
| !!! | CAGTTTTTGACTTTCTTGGA+TGG | - | chr3.3:50399359-50399378 | MS.gene04049:CDS | 35.0% |
| AAGAGCTTATGGAACACGTT+AGG | - | chr3.3:50398336-50398355 | MS.gene04049:CDS | 40.0% | |
| AAGGTTACTAGGTGTGTGTT+TGG | + | chr3.3:50398866-50398885 | None:intergenic | 40.0% | |
| AATACTGGGATAATCCTTCG+GGG | - | chr3.3:50399626-50399645 | MS.gene04049:CDS | 40.0% | |
| ACCTTGCAAACCAGAAACAA+TGG | + | chr3.3:50399886-50399905 | None:intergenic | 40.0% | |
| ACGCAGAAAGAGTTCTATGT+AGG | + | chr3.3:50399596-50399615 | None:intergenic | 40.0% | |
| AGAATGCACTGTCATCAGAT+TGG | - | chr3.3:50399127-50399146 | MS.gene04049:CDS | 40.0% | |
| AGAGCTTATGGAACACGTTA+GGG | - | chr3.3:50398337-50398356 | MS.gene04049:CDS | 40.0% | |
| ATACTAACCTAGTAGCTCCA+AGG | + | chr3.3:50399284-50399303 | None:intergenic | 40.0% | |
| CAACTCATGAACATGTCCTA+AGG | + | chr3.3:50398429-50398448 | None:intergenic | 40.0% | |
| CAGAAAGAGTTCTATGTAGG+AGG | + | chr3.3:50399593-50399612 | None:intergenic | 40.0% | |
| CATAATGGTTGAAACTCCCT+GGG | + | chr3.3:50400226-50400245 | None:intergenic | 40.0% | |
| CTCTTAGCACTCTTGTTCAA+TGG | + | chr3.3:50401014-50401033 | None:intergenic | 40.0% | |
| CTTGGGATACCTCTCATATA+TGG | - | chr3.3:50399195-50399214 | MS.gene04049:intron | 40.0% | |
| GAATGCACTGTCATCAGATT+GGG | - | chr3.3:50399128-50399147 | MS.gene04049:CDS | 40.0% | |
| GATGACAGTGCATTCTCAAA+TGG | + | chr3.3:50399123-50399142 | None:intergenic | 40.0% | |
| GCATCATCAATTCTGCTCAT+TGG | + | chr3.3:50400735-50400754 | None:intergenic | 40.0% | |
| GGAACACATGCTGATAATCT+TGG | - | chr3.3:50401047-50401066 | MS.gene04049:intron | 40.0% | |
| GGTTGGACTAAAACTTGGTA+TGG | - | chr3.3:50401083-50401102 | MS.gene04049:intron | 40.0% | |
| TACAGGTATGCAAAGATCCT+AGG | - | chr3.3:50399802-50399821 | MS.gene04049:intron | 40.0% | |
| TAGAAGAATTGGAGCTGCAA+CGG | - | chr3.3:50399410-50399429 | MS.gene04049:intron | 40.0% | |
| TAGCAACAGTGCGTTCAATT+TGG | + | chr3.3:50398023-50398042 | None:intergenic | 40.0% | |
| TATCACTTTCGGTCAAACCA+AGG | + | chr3.3:50401232-50401251 | None:intergenic | 40.0% | |
| TCATTTGACCAATCTTCTCC+TGG | + | chr3.3:50397999-50398018 | None:intergenic | 40.0% | |
| TCATTTGCAATTGTAGCCGT+TGG | - | chr3.3:50401570-50401589 | MS.gene04049:intron | 40.0% | |
| TCCATCACCAACAAAATGCT+TGG | + | chr3.3:50400112-50400131 | None:intergenic | 40.0% | |
| TCCTTGATACGAGCTTCAAT+GGG | + | chr3.3:50397955-50397974 | None:intergenic | 40.0% | |
| TCTATCTTTACCAAAAGCCG+TGG | + | chr3.3:50401735-50401754 | None:intergenic | 40.0% | |
| TGAAATGGGGTTACTACCAA+TGG | + | chr3.3:50398070-50398089 | None:intergenic | 40.0% | |
| TGAATTGTCACCCAATGACT+CGG | + | chr3.3:50401610-50401629 | None:intergenic | 40.0% | |
| TGACAGTGCATTCTCAAATG+GGG | + | chr3.3:50399121-50399140 | None:intergenic | 40.0% | |
| TGAGAACTCGTTACGTTCTA+TGG | + | chr3.3:50401553-50401572 | None:intergenic | 40.0% | |
| TTGGATTTCAATGTGGAGGT+TGG | - | chr3.3:50401066-50401085 | MS.gene04049:intron | 40.0% | |
| ! | AAAACTTGGTATGGTGCTAG+TGG | - | chr3.3:50401092-50401111 | MS.gene04049:intron | 40.0% |
| ! | AAACTTGGTATGGTGCTAGT+GGG | - | chr3.3:50401093-50401112 | MS.gene04049:intron | 40.0% |
| ! | AATATTTACGCAGGTGATGG+TGG | - | chr3.3:50400650-50400669 | MS.gene04049:CDS | 40.0% |
| ! | ACTCATAAGGGTGTGAATGA+AGG | - | chr3.3:50400135-50400154 | MS.gene04049:intron | 40.0% |
| ! | AGAGGTCTTTGATGACAGAA+GGG | + | chr3.3:50398047-50398066 | None:intergenic | 40.0% |
| ! | CATGTCAATTCCAGCATTGA+CGG | + | chr3.3:50400561-50400580 | None:intergenic | 40.0% |
| ! | CGTTCTATGGTGTTTTCTGA+TGG | + | chr3.3:50401540-50401559 | None:intergenic | 40.0% |
| ! | TTTGGTAGCCATGACTTCAA+AGG | - | chr3.3:50401813-50401832 | MS.gene04049:CDS | 40.0% |
| !! | TCCATTGTTTCTGGTTTGCA+AGG | - | chr3.3:50399882-50399901 | MS.gene04049:intron | 40.0% |
| !! | TTGAGAGTAAAGTTTGCTGC+TGG | - | chr3.3:50400768-50400787 | MS.gene04049:intron | 40.0% |
| !!! | AAGCATTTTGTTGGTGATGG+AGG | - | chr3.3:50400111-50400130 | MS.gene04049:intron | 40.0% |
| !!! | GGACCAGTTTTTGACTTTCT+TGG | - | chr3.3:50399355-50399374 | MS.gene04049:CDS | 40.0% |
| ACCCATTGAAGCTCGTATCA+AGG | - | chr3.3:50397951-50397970 | MS.gene04049:CDS | 45.0% | |
| ACCCGTGAGGTTTACAAAGT+CGG | + | chr3.3:50400511-50400530 | None:intergenic | 45.0% | |
| AGCCACATAGAGATCTTGCA+CGG | - | chr3.3:50400925-50400944 | MS.gene04049:intron | 45.0% | |
| AGCCGACAAAATCCCAACAT+TGG | - | chr3.3:50401674-50401693 | MS.gene04049:intron | 45.0% | |
| AGGTATGCAAAGATCCTAGG+TGG | - | chr3.3:50399805-50399824 | MS.gene04049:intron | 45.0% | |
| ATGACTCTCCAGGAGAAGAT+TGG | - | chr3.3:50397988-50398007 | MS.gene04049:CDS | 45.0% | |
| ATTCCATCTCCTTCACTACC+TGG | + | chr3.3:50401780-50401799 | None:intergenic | 45.0% | |
| CATGCAGCAACACTATCACT+TGG | + | chr3.3:50401885-50401904 | None:intergenic | 45.0% | |
| CCAGGGAGTTTCAACCATTA+TGG | - | chr3.3:50400224-50400243 | MS.gene04049:intron | 45.0% | |
| CCATAATGGTTGAAACTCCC+TGG | + | chr3.3:50400227-50400246 | None:intergenic | 45.0% | |
| CCATGTTTATGTCCTTGTGG+CGG | + | chr3.3:50399912-50399931 | None:intergenic | 45.0% | |
| CGTCAATGCTGGAATTGACA+TGG | - | chr3.3:50400559-50400578 | MS.gene04049:intron | 45.0% | |
| CGTCCTATACTAGCTGGAAT+GGG | - | chr3.3:50400247-50400266 | MS.gene04049:intron | 45.0% | |
| GATTGGGCTGATATGGTAGA+TGG | - | chr3.3:50399144-50399163 | MS.gene04049:CDS | 45.0% | |
| GCGCTTGAAGTTAAAGCAAG+TGG | - | chr3.3:50399432-50399451 | MS.gene04049:intron | 45.0% | |
| GCTAGATTCAGTTGGTTGCA+AGG | - | chr3.3:50400824-50400843 | MS.gene04049:intron | 45.0% | |
| GCTAGTATAGGACGCCATAA+TGG | + | chr3.3:50400241-50400260 | None:intergenic | 45.0% | |
| GGTATGCAAAGATCCTAGGT+GGG | - | chr3.3:50399806-50399825 | MS.gene04049:intron | 45.0% | |
| GTATGCAAAGATCCTAGGTG+GGG | - | chr3.3:50399807-50399826 | MS.gene04049:intron | 45.0% | |
| GTCATCAAAGACCTCTCCAT+TGG | - | chr3.3:50398051-50398070 | MS.gene04049:CDS | 45.0% | |
| GTCATCAGATTGGGCTGATA+TGG | - | chr3.3:50399137-50399156 | MS.gene04049:CDS | 45.0% | |
| GTCCTTGATACGAGCTTCAA+TGG | + | chr3.3:50397956-50397975 | None:intergenic | 45.0% | |
| GTGGAGGTTGGACTAAAACT+TGG | - | chr3.3:50401078-50401097 | MS.gene04049:intron | 45.0% | |
| TAACTTTGCTCCTTGTGTCG+CGG | - | chr3.3:50399464-50399483 | MS.gene04049:intron | 45.0% | |
| TATCGATAATCTGACCCGTG+AGG | + | chr3.3:50400524-50400543 | None:intergenic | 45.0% | |
| TTATGGCGTCCTATACTAGC+TGG | - | chr3.3:50400241-50400260 | MS.gene04049:intron | 45.0% | |
| TTGTGATTTCCGACTGGGAA+GGG | - | chr3.3:50400480-50400499 | MS.gene04049:intron | 45.0% | |
| TTTGTGATTTCCGACTGGGA+AGG | - | chr3.3:50400479-50400498 | MS.gene04049:intron | 45.0% | |
| ! | ACCGACTTTGTAAACCTCAC+GGG | - | chr3.3:50400507-50400526 | MS.gene04049:intron | 45.0% |
| ! | ACGAGCTTCAATGGGTTCAT+TGG | + | chr3.3:50397947-50397966 | None:intergenic | 45.0% |
| ! | CGAGCTTCAATGGGTTCATT+GGG | + | chr3.3:50397946-50397965 | None:intergenic | 45.0% |
| ! | GACCGACTTTGTAAACCTCA+CGG | - | chr3.3:50400506-50400525 | MS.gene04049:intron | 45.0% |
| ! | GAGAGGTCTTTGATGACAGA+AGG | + | chr3.3:50398048-50398067 | None:intergenic | 45.0% |
| ! | GAGGTCTTTGATGACAGAAG+GGG | + | chr3.3:50398046-50398065 | None:intergenic | 45.0% |
| ! | GCATGTGCCAAGCATTTTGT+TGG | - | chr3.3:50400102-50400121 | MS.gene04049:intron | 45.0% |
| ! | GGAAGCATACTAAGTTCTGG+AGG | - | chr3.3:50399090-50399109 | MS.gene04049:CDS | 45.0% |
| !! | AGCCGTGGCTCTAAAACTAA+CGG | + | chr3.3:50401720-50401739 | None:intergenic | 45.0% |
| !! | AGGGTTTTGTGATTTCCGAC+TGG | - | chr3.3:50400474-50400493 | MS.gene04049:intron | 45.0% |
| !! | CAGCTCTAGAGTCTAGACTT+GGG | - | chr3.3:50399178-50399197 | MS.gene04049:CDS | 45.0% |
| !! | GCCAAGCATTTTGTTGGTGA+TGG | - | chr3.3:50400108-50400127 | MS.gene04049:intron | 45.0% |
| !! | GGAGTTGACCTTTGAAGTCA+TGG | + | chr3.3:50401824-50401843 | None:intergenic | 45.0% |
| !! | GGGTTTTGTGATTTCCGACT+GGG | - | chr3.3:50400475-50400494 | MS.gene04049:intron | 45.0% |
| !! | GGTGATGGAGGTACTCATAA+GGG | - | chr3.3:50400123-50400142 | MS.gene04049:intron | 45.0% |
| !! | TCAGCTCTAGAGTCTAGACT+TGG | - | chr3.3:50399177-50399196 | MS.gene04049:CDS | 45.0% |
| !! | TGGTGATGGAGGTACTCATA+AGG | - | chr3.3:50400122-50400141 | MS.gene04049:intron | 45.0% |
| !!! | AGTTTTAGAGCCACGGCTTT+TGG | - | chr3.3:50401722-50401741 | MS.gene04049:intron | 45.0% |
| !!! | GACCGTTAGTTTTAGAGCCA+CGG | - | chr3.3:50401715-50401734 | MS.gene04049:intron | 45.0% |
| AACCTGTGTTTCAGCTCCGA+CGG | + | chr3.3:50401502-50401521 | None:intergenic | 50.0% | |
| AAGGTCAACTCCCAGTCACT+TGG | - | chr3.3:50401832-50401851 | MS.gene04049:CDS | 50.0% | |
| ACGCTTCGAAACCAAGTGAC+TGG | + | chr3.3:50401846-50401865 | None:intergenic | 50.0% | |
| AGCTCCTTATGCCGAGTCAT+TGG | - | chr3.3:50401596-50401615 | MS.gene04049:intron | 50.0% | |
| ATGATCTTTCCTGTCCCCGA+AGG | + | chr3.3:50399643-50399662 | None:intergenic | 50.0% | |
| CCGCCACAAGGACATAAACA+TGG | - | chr3.3:50399909-50399928 | MS.gene04049:intron | 50.0% | |
| CCTACCTTCCAGCCACAAAA+GGG | + | chr3.3:50399938-50399957 | None:intergenic | 50.0% | |
| CGCTTCGAAACCAAGTGACT+GGG | + | chr3.3:50401845-50401864 | None:intergenic | 50.0% | |
| GATGCTGTTAAAGCAGCCGT+CGG | - | chr3.3:50401483-50401502 | MS.gene04049:intron | 50.0% | |
| GCCACATAGAGATCTTGCAC+GGG | - | chr3.3:50400926-50400945 | MS.gene04049:intron | 50.0% | |
| GCGTCCCTACCCATAATACT+GGG | - | chr3.3:50399612-50399631 | MS.gene04049:CDS | 50.0% | |
| GCGTCCTATACTAGCTGGAA+TGG | - | chr3.3:50400246-50400265 | MS.gene04049:intron | 50.0% | |
| GCTCCTTATGCCGAGTCATT+GGG | - | chr3.3:50401597-50401616 | MS.gene04049:intron | 50.0% | |
| GGAAGCAGTTCGAAAGTCGT+TGG | - | chr3.3:50400947-50400966 | MS.gene04049:intron | 50.0% | |
| GGAGAGTCATGCGTGAAAGA+AGG | + | chr3.3:50397978-50397997 | None:intergenic | 50.0% | |
| GGCATAAGGAGCTTCACCAA+CGG | + | chr3.3:50401589-50401608 | None:intergenic | 50.0% | |
| TAGACGCTCTTGTTGCTGCT+TGG | - | chr3.3:50401751-50401770 | MS.gene04049:intron | 50.0% | |
| TCATAGCATCTTCCCCACCT+AGG | + | chr3.3:50399822-50399841 | None:intergenic | 50.0% | |
| TCCCGTGCAAGATCTCTATG+TGG | + | chr3.3:50400930-50400949 | None:intergenic | 50.0% | |
| TCTTTCACGCATGACTCTCC+AGG | - | chr3.3:50397978-50397997 | MS.gene04049:CDS | 50.0% | |
| TGCGTCCCTACCCATAATAC+TGG | - | chr3.3:50399611-50399630 | MS.gene04049:CDS | 50.0% | |
| TGGGGTTACTACCAATGGAG+AGG | + | chr3.3:50398065-50398084 | None:intergenic | 50.0% | |
| TTGCCAGGTAGTGAAGGAGA+TGG | - | chr3.3:50401774-50401793 | MS.gene04049:intron | 50.0% | |
| ! | CATGGATACCCTTTTGTGGC+TGG | - | chr3.3:50399927-50399946 | MS.gene04049:CDS | 50.0% |
| ! | GATACCCTTTTGTGGCTGGA+AGG | - | chr3.3:50399931-50399950 | MS.gene04049:CDS | 50.0% |
| ! | TCACCCAATGACTCGGCATA+AGG | + | chr3.3:50401603-50401622 | None:intergenic | 50.0% |
| ! | TTTCCGCACAATGTTGGCCT+TGG | - | chr3.3:50399264-50399283 | MS.gene04049:intron | 50.0% |
| !! | AATTCCAGCATTGACGGCAG+AGG | + | chr3.3:50400555-50400574 | None:intergenic | 50.0% |
| !! | ATGTTGGCCTTGGAGCTACT+AGG | - | chr3.3:50399274-50399293 | MS.gene04049:intron | 50.0% |
| ATCTCCTCTGCCGTCAATGC+TGG | - | chr3.3:50400548-50400567 | MS.gene04049:intron | 55.0% | |
| CAATGCCTTACCGCGACACA+AGG | + | chr3.3:50399477-50399496 | None:intergenic | 55.0% | |
| GAGCTCACAATCCCTTTCCG+TGG | - | chr3.3:50401630-50401649 | MS.gene04049:intron | 55.0% | |
| GCCTACCTTCCAGCCACAAA+AGG | + | chr3.3:50399939-50399958 | None:intergenic | 55.0% | |
| GCGCCCATTCCAGCTAGTAT+AGG | + | chr3.3:50400253-50400272 | None:intergenic | 55.0% | |
| GCTAGTGGGAGGATCACAGT+TGG | - | chr3.3:50401107-50401126 | MS.gene04049:intron | 55.0% | |
| GCTCCAAGGCCAACATTGTG+CGG | + | chr3.3:50399270-50399289 | None:intergenic | 55.0% | |
| GCTTGGTTGCCAGGTAGTGA+AGG | - | chr3.3:50401768-50401787 | MS.gene04049:intron | 55.0% | |
| TGGGATAATCCTTCGGGGAC+AGG | - | chr3.3:50399631-50399650 | MS.gene04049:CDS | 55.0% | |
| TTGCTCCTTGTGTCGCGGTA+AGG | - | chr3.3:50399469-50399488 | MS.gene04049:intron | 55.0% | |
| ! | CCCTTTTGTGGCTGGAAGGT+AGG | - | chr3.3:50399935-50399954 | MS.gene04049:CDS | 55.0% |
| ! | CTTGGTATGGTGCTAGTGGG+AGG | - | chr3.3:50401096-50401115 | MS.gene04049:intron | 55.0% |
| ! | CTTGTTGCTGCTTGGTTGCC+AGG | - | chr3.3:50401759-50401778 | MS.gene04049:intron | 55.0% |
| AGCCGTCGGAGCTGAAACAC+AGG | - | chr3.3:50401497-50401516 | MS.gene04049:intron | 60.0% | |
| TTGCAAGGTCAGCCGCCACA+AGG | - | chr3.3:50399897-50399916 | MS.gene04049:intron | 60.0% | |
| TCGGTCGAGCCCTTCCCAGT+CGG | + | chr3.3:50400492-50400511 | None:intergenic | 65.0% | |
| !! | CGCAGGTGATGGTGGCTGTC+AGG | - | chr3.3:50400658-50400677 | MS.gene04049:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 50397922 | 50401953 | 50397922 | ID=MS.gene04049 |
| chr3.3 | mRNA | 50397922 | 50401953 | 50397922 | ID=MS.gene04049.t1;Parent=MS.gene04049 |
| chr3.3 | exon | 50401803 | 50401953 | 50401803 | ID=MS.gene04049.t1.exon1;Parent=MS.gene04049.t1 |
| chr3.3 | CDS | 50401803 | 50401953 | 50401803 | ID=cds.MS.gene04049.t1;Parent=MS.gene04049.t1 |
| chr3.3 | exon | 50400580 | 50400784 | 50400580 | ID=MS.gene04049.t1.exon2;Parent=MS.gene04049.t1 |
| chr3.3 | CDS | 50400580 | 50400784 | 50400580 | ID=cds.MS.gene04049.t1;Parent=MS.gene04049.t1 |
| chr3.3 | exon | 50400390 | 50400480 | 50400390 | ID=MS.gene04049.t1.exon3;Parent=MS.gene04049.t1 |
| chr3.3 | CDS | 50400390 | 50400480 | 50400390 | ID=cds.MS.gene04049.t1;Parent=MS.gene04049.t1 |
| chr3.3 | exon | 50399923 | 50400068 | 50399923 | ID=MS.gene04049.t1.exon4;Parent=MS.gene04049.t1 |
| chr3.3 | CDS | 50399923 | 50400068 | 50399923 | ID=cds.MS.gene04049.t1;Parent=MS.gene04049.t1 |
| chr3.3 | exon | 50399543 | 50399786 | 50399543 | ID=MS.gene04049.t1.exon5;Parent=MS.gene04049.t1 |
| chr3.3 | CDS | 50399543 | 50399786 | 50399543 | ID=cds.MS.gene04049.t1;Parent=MS.gene04049.t1 |
| chr3.3 | exon | 50399295 | 50399399 | 50399295 | ID=MS.gene04049.t1.exon6;Parent=MS.gene04049.t1 |
| chr3.3 | CDS | 50399295 | 50399399 | 50399295 | ID=cds.MS.gene04049.t1;Parent=MS.gene04049.t1 |
| chr3.3 | exon | 50399030 | 50399212 | 50399030 | ID=MS.gene04049.t1.exon7;Parent=MS.gene04049.t1 |
| chr3.3 | CDS | 50399030 | 50399212 | 50399030 | ID=cds.MS.gene04049.t1;Parent=MS.gene04049.t1 |
| chr3.3 | exon | 50398747 | 50398948 | 50398747 | ID=MS.gene04049.t1.exon8;Parent=MS.gene04049.t1 |
| chr3.3 | CDS | 50398747 | 50398948 | 50398747 | ID=cds.MS.gene04049.t1;Parent=MS.gene04049.t1 |
| chr3.3 | exon | 50397922 | 50398406 | 50397922 | ID=MS.gene04049.t1.exon9;Parent=MS.gene04049.t1 |
| chr3.3 | CDS | 50397922 | 50398406 | 50397922 | ID=cds.MS.gene04049.t1;Parent=MS.gene04049.t1 |
| Gene Sequence |
| Protein sequence |
