Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04462.t1 | XP_013460158.1 | 97.5 | 603 | 15 | 0 | 1 | 603 | 18 | 620 | 0.00E+00 | 1203.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04462.t1 | A7LXU3 | 32.2 | 652 | 365 | 20 | 8 | 602 | 30 | 661 | 4.2e-83 | 310.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04462.t1 | A0A072UWG8 | 97.5 | 603 | 15 | 0 | 1 | 603 | 18 | 620 | 0.0e+00 | 1203.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene43773 | MS.gene04462 | PPI |
| MS.gene25841 | MS.gene04462 | PPI |
| MS.gene70763 | MS.gene04462 | PPI |
| MS.gene003292 | MS.gene04462 | PPI |
| MS.gene05603 | MS.gene04462 | PPI |
| MS.gene04462 | MS.gene044157 | PPI |
| MS.gene88756 | MS.gene04462 | PPI |
| MS.gene04049 | MS.gene04462 | PPI |
| MS.gene02092 | MS.gene04462 | PPI |
| MS.gene03078 | MS.gene04462 | PPI |
| MS.gene71046 | MS.gene04462 | PPI |
| MS.gene04462 | MS.gene04573 | PPI |
| MS.gene74550 | MS.gene04462 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04462.t1 | MTR_3g462820 | 97.512 | 603 | 15 | 0 | 1 | 603 | 18 | 620 | 0.0 | 1218 |
| MS.gene04462.t1 | MTR_5g069800 | 74.833 | 600 | 149 | 2 | 1 | 598 | 1 | 600 | 0.0 | 949 |
| MS.gene04462.t1 | MTR_5g069740 | 74.333 | 600 | 140 | 3 | 1 | 598 | 1 | 588 | 0.0 | 924 |
| MS.gene04462.t1 | MTR_6g028090 | 58.557 | 596 | 244 | 3 | 5 | 599 | 28 | 621 | 0.0 | 732 |
| MS.gene04462.t1 | MTR_3g079750 | 58.151 | 595 | 246 | 3 | 5 | 598 | 28 | 620 | 0.0 | 723 |
| MS.gene04462.t1 | MTR_6g028100 | 58.151 | 595 | 246 | 3 | 5 | 598 | 28 | 620 | 0.0 | 721 |
| MS.gene04462.t1 | MTR_2g030000 | 57.479 | 595 | 250 | 3 | 5 | 598 | 30 | 622 | 0.0 | 719 |
| MS.gene04462.t1 | MTR_6g028120 | 57.983 | 595 | 247 | 3 | 5 | 598 | 9 | 601 | 0.0 | 715 |
| MS.gene04462.t1 | MTR_7g086030 | 57.479 | 595 | 250 | 3 | 5 | 598 | 29 | 621 | 0.0 | 711 |
| MS.gene04462.t1 | MTR_7g086030 | 57.479 | 595 | 250 | 3 | 5 | 598 | 4 | 596 | 0.0 | 711 |
| MS.gene04462.t1 | MTR_6g028110 | 56.975 | 595 | 253 | 3 | 5 | 598 | 29 | 621 | 0.0 | 710 |
| MS.gene04462.t1 | MTR_6g028110 | 56.975 | 595 | 253 | 3 | 5 | 598 | 29 | 621 | 0.0 | 708 |
| MS.gene04462.t1 | MTR_7g086010 | 56.532 | 444 | 181 | 2 | 5 | 438 | 29 | 470 | 0.0 | 523 |
| MS.gene04462.t1 | MTR_3g074060 | 27.169 | 611 | 337 | 22 | 5 | 572 | 44 | 589 | 1.37e-41 | 161 |
| MS.gene04462.t1 | MTR_5g062650 | 27.667 | 600 | 351 | 22 | 5 | 572 | 50 | 598 | 2.09e-40 | 157 |
| MS.gene04462.t1 | MTR_5g062320 | 27.197 | 603 | 347 | 23 | 5 | 572 | 48 | 593 | 3.11e-40 | 157 |
| MS.gene04462.t1 | MTR_5g062430 | 27.529 | 603 | 345 | 23 | 5 | 572 | 50 | 595 | 8.26e-40 | 155 |
| MS.gene04462.t1 | MTR_5g062370 | 27.032 | 603 | 348 | 24 | 5 | 572 | 50 | 595 | 9.66e-40 | 155 |
| MS.gene04462.t1 | MTR_7g109390 | 25.972 | 643 | 358 | 27 | 12 | 602 | 49 | 625 | 4.29e-38 | 150 |
| MS.gene04462.t1 | MTR_5g062370 | 26.644 | 593 | 343 | 24 | 5 | 562 | 50 | 585 | 6.72e-36 | 142 |
| MS.gene04462.t1 | MTR_4g094285 | 25.041 | 603 | 354 | 21 | 5 | 572 | 54 | 593 | 3.80e-35 | 142 |
| MS.gene04462.t1 | MTR_1g087240 | 25.000 | 648 | 361 | 28 | 11 | 602 | 43 | 621 | 1.12e-34 | 140 |
| MS.gene04462.t1 | MTR_2g008240 | 26.578 | 602 | 332 | 26 | 12 | 572 | 62 | 594 | 1.82e-32 | 133 |
| MS.gene04462.t1 | MTR_2g034720 | 25.839 | 596 | 355 | 25 | 5 | 572 | 41 | 577 | 2.65e-32 | 133 |
| MS.gene04462.t1 | MTR_5g030860 | 26.461 | 616 | 338 | 30 | 5 | 572 | 42 | 590 | 2.01e-28 | 121 |
| MS.gene04462.t1 | MTR_1g106860 | 25.295 | 593 | 369 | 22 | 5 | 572 | 38 | 581 | 2.61e-26 | 114 |
| MS.gene04462.t1 | MTR_5g069850 | 70.690 | 58 | 17 | 0 | 528 | 585 | 1 | 58 | 8.63e-24 | 95.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04462.t1 | AT3G47000 | 72.788 | 599 | 159 | 3 | 3 | 599 | 8 | 604 | 0.0 | 936 |
| MS.gene04462.t1 | AT3G47040 | 71.285 | 599 | 170 | 2 | 3 | 600 | 8 | 605 | 0.0 | 922 |
| MS.gene04462.t1 | AT3G47040 | 68.429 | 624 | 170 | 3 | 3 | 600 | 8 | 630 | 0.0 | 908 |
| MS.gene04462.t1 | AT3G47050 | 71.524 | 597 | 166 | 3 | 4 | 599 | 9 | 602 | 0.0 | 894 |
| MS.gene04462.t1 | AT3G47010 | 68.456 | 596 | 186 | 2 | 4 | 598 | 10 | 604 | 0.0 | 886 |
| MS.gene04462.t1 | AT3G47010 | 68.289 | 596 | 186 | 3 | 4 | 598 | 10 | 603 | 0.0 | 877 |
| MS.gene04462.t1 | AT3G47040 | 66.297 | 632 | 178 | 5 | 3 | 600 | 8 | 638 | 0.0 | 875 |
| MS.gene04462.t1 | AT3G47000 | 74.887 | 442 | 111 | 0 | 3 | 444 | 8 | 449 | 0.0 | 728 |
| MS.gene04462.t1 | AT5G04885 | 58.221 | 596 | 245 | 4 | 4 | 598 | 46 | 638 | 0.0 | 724 |
| MS.gene04462.t1 | AT5G04885 | 58.221 | 596 | 245 | 4 | 4 | 598 | 29 | 621 | 0.0 | 724 |
| MS.gene04462.t1 | AT5G04885 | 58.221 | 596 | 245 | 4 | 4 | 598 | 29 | 621 | 0.0 | 724 |
| MS.gene04462.t1 | AT3G47040 | 73.077 | 442 | 119 | 0 | 3 | 444 | 8 | 449 | 0.0 | 710 |
| MS.gene04462.t1 | AT3G47010 | 70.522 | 441 | 130 | 0 | 4 | 444 | 10 | 450 | 0.0 | 687 |
| MS.gene04462.t1 | AT5G20950 | 57.215 | 596 | 251 | 4 | 5 | 599 | 104 | 696 | 0.0 | 687 |
| MS.gene04462.t1 | AT5G20950 | 57.215 | 596 | 251 | 4 | 5 | 599 | 26 | 618 | 0.0 | 686 |
| MS.gene04462.t1 | AT5G20950 | 57.215 | 596 | 251 | 4 | 5 | 599 | 26 | 618 | 0.0 | 686 |
| MS.gene04462.t1 | AT3G47000 | 72.028 | 429 | 116 | 3 | 173 | 599 | 1 | 427 | 0.0 | 660 |
| MS.gene04462.t1 | AT5G20940 | 55.630 | 595 | 258 | 4 | 5 | 598 | 32 | 621 | 0.0 | 659 |
| MS.gene04462.t1 | AT3G47010 | 66.511 | 427 | 140 | 3 | 173 | 598 | 1 | 425 | 0.0 | 614 |
| MS.gene04462.t1 | AT3G47050 | 72.849 | 372 | 101 | 0 | 4 | 375 | 9 | 380 | 0.0 | 586 |
| MS.gene04462.t1 | AT3G62710 | 47.847 | 627 | 278 | 14 | 5 | 598 | 38 | 648 | 0.0 | 559 |
| MS.gene04462.t1 | AT5G49360 | 25.394 | 634 | 373 | 24 | 9 | 600 | 53 | 628 | 4.19e-36 | 144 |
| MS.gene04462.t1 | AT1G02640 | 26.710 | 614 | 316 | 27 | 11 | 572 | 50 | 581 | 8.98e-34 | 137 |
| MS.gene04462.t1 | AT3G19620 | 25.000 | 640 | 368 | 27 | 13 | 600 | 49 | 628 | 2.20e-33 | 136 |
| MS.gene04462.t1 | AT5G64570 | 25.957 | 601 | 336 | 25 | 12 | 572 | 66 | 597 | 2.64e-32 | 133 |
| MS.gene04462.t1 | AT5G10560 | 26.766 | 538 | 330 | 21 | 85 | 572 | 78 | 601 | 1.41e-30 | 128 |
| MS.gene04462.t1 | AT5G09730 | 25.041 | 615 | 338 | 25 | 5 | 572 | 49 | 587 | 1.56e-29 | 124 |
| MS.gene04462.t1 | AT5G64570 | 25.246 | 610 | 347 | 25 | 12 | 581 | 66 | 606 | 6.65e-29 | 122 |
| MS.gene04462.t1 | AT1G78060 | 25.418 | 598 | 352 | 24 | 11 | 572 | 44 | 583 | 7.06e-29 | 122 |
| MS.gene04462.t1 | AT5G64570 | 26.840 | 462 | 290 | 21 | 134 | 572 | 3 | 439 | 7.91e-25 | 109 |
Find 149 sgRNAs with CRISPR-Local
Find 265 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTTGTTTCCTCTTGGTTT+TGG | 0.130723 | 3.4:-58227786 | MS.gene04462:CDS |
| AAGATGACTTCCATTGTTTC+TGG | 0.168871 | 3.4:-58229885 | MS.gene04462:CDS |
| CCAGGGAGTTTCAACCATTA+TGG | 0.249679 | 3.4:-58229534 | MS.gene04462:CDS |
| AGCAAAGATCTGTCACTTAA+TGG | 0.265440 | 3.4:+58228954 | None:intergenic |
| ACATTGGTTATTCTGATATC+TGG | 0.273731 | 3.4:-58228005 | MS.gene04462:CDS |
| GCTGATTTGGTTAGAAGAAT+TGG | 0.279268 | 3.4:-58230359 | MS.gene04462:CDS |
| GCCAACATTGTGAGGAAATA+TGG | 0.305822 | 3.4:+58230499 | None:intergenic |
| TGAGAACTCGTTACGTTCTA+TGG | 0.306943 | 3.4:+58228145 | None:intergenic |
| TAGCAACAGTGCGTTCAATT+TGG | 0.313170 | 3.4:+58231756 | None:intergenic |
| TTGACCTCTTTAATTGAATC+AGG | 0.314382 | 3.4:-58229056 | MS.gene04462:CDS |
| TTTCTATAGAGATGCTGATT+TGG | 0.330050 | 3.4:-58230372 | MS.gene04462:intron |
| AGATTTCGGTTAAAAGAAAA+TGG | 0.333795 | 3.4:+58229471 | None:intergenic |
| CTTGGGATACCTCTCATATA+TGG | 0.334109 | 3.4:-58230563 | MS.gene04462:CDS |
| TCTTTCACGCATGACTCTTC+AGG | 0.341350 | 3.4:-58231798 | MS.gene04462:CDS |
| ACGAGCTTCAATGGGTTCAT+TGG | 0.350130 | 3.4:+58231832 | None:intergenic |
| TGGGAAATGCAGTCTAAATA+AGG | 0.351216 | 3.4:+58229554 | None:intergenic |
| GTCATCAGATTGGGCTGATA+TGG | 0.359012 | 3.4:-58230621 | MS.gene04462:CDS |
| CATGGTAATAATAGTGTCTA+TGG | 0.373663 | 3.4:-58230527 | MS.gene04462:CDS |
| TTTCCTCACAATGTTGGCCT+TGG | 0.382388 | 3.4:-58230494 | MS.gene04462:CDS |
| AGCTCCTTATGCCGAGTCAT+TGG | 0.384217 | 3.4:-58228099 | MS.gene04462:CDS |
| CGAGCTTCAATGGGTTCATT+GGG | 0.388791 | 3.4:+58231833 | None:intergenic |
| GGAATCACAGATGTAATCTT+TGG | 0.389084 | 3.4:-58227900 | MS.gene04462:CDS |
| GCTAAGAGAATTCTTGTTAC+CGG | 0.389610 | 3.4:-58228698 | MS.gene04462:CDS |
| CTTGTTGCCGCTTGGTTGCC+AGG | 0.393551 | 3.4:-58227936 | MS.gene04462:CDS |
| GTCCTTGATACGAGCTTCAA+TGG | 0.394933 | 3.4:+58231823 | None:intergenic |
| TGTGAACCTTTGTTTCCTCT+TGG | 0.400222 | 3.4:-58227792 | MS.gene04462:CDS |
| CGCAGGTGATGGTGGCTGTC+AGG | 0.400858 | 3.4:-58229100 | MS.gene04462:intron |
| ATAGGAAGCATACTAAGTTC+TGG | 0.403935 | 3.4:-58230671 | MS.gene04462:intron |
| GGAACTCATGCTGATAATCT+TGG | 0.404253 | 3.4:-58228677 | MS.gene04462:CDS |
| GATGACAGTGCATTCTCAAA+TGG | 0.407895 | 3.4:+58230638 | None:intergenic |
| CTCTTAGCATTCTTGTTCAA+TGG | 0.408954 | 3.4:+58228713 | None:intergenic |
| GCCTACCTTCCAGCCACAAA+AGG | 0.425345 | 3.4:+58229822 | None:intergenic |
| TTCTTGTTCAATGGAAGAAA+AGG | 0.426285 | 3.4:+58228722 | None:intergenic |
| TATGGAATTGATGCAGTTCA+TGG | 0.433577 | 3.4:-58230545 | MS.gene04462:CDS |
| TTCACCTGATTCAATTAAAG+AGG | 0.444760 | 3.4:+58229052 | None:intergenic |
| ATGACAGTGCATTCTCAAAT+GGG | 0.446083 | 3.4:+58230639 | None:intergenic |
| GCTCCTTATGCCGAGTCATT+GGG | 0.449392 | 3.4:-58228098 | MS.gene04462:CDS |
| TCCATTGTTTCTGGTTTGCA+AGG | 0.450032 | 3.4:-58229876 | MS.gene04462:CDS |
| ATCTCCTCTGCCGTCAATGC+TGG | 0.456108 | 3.4:-58229210 | MS.gene04462:CDS |
| AGAATGCACTGTCATCAGAT+TGG | 0.456347 | 3.4:-58230631 | MS.gene04462:CDS |
| GCGTCCTATACTAGCTGGAA+TGG | 0.461450 | 3.4:-58229512 | MS.gene04462:CDS |
| AAACAATGGAAGTCATCTTT+CGG | 0.464872 | 3.4:+58229889 | None:intergenic |
| GATTGGGCTGATATGGTAGA+TGG | 0.465157 | 3.4:-58230614 | MS.gene04462:CDS |
| TAATATCAGTTCCACGGAAA+GGG | 0.465753 | 3.4:+58228054 | None:intergenic |
| GCATCATCGATTCTGCTCAT+TGG | 0.472050 | 3.4:+58229026 | None:intergenic |
| ACCATATTTCCTCACAATGT+TGG | 0.479078 | 3.4:-58230500 | MS.gene04462:CDS |
| TTGGATTTCAATGTGGAGGT+TGG | 0.482406 | 3.4:-58228658 | MS.gene04462:CDS |
| TCGCCCAATGACTCGGCATA+AGG | 0.482678 | 3.4:+58228095 | None:intergenic |
| TTATTTAGACTGCATTTCCC+AGG | 0.486529 | 3.4:-58229552 | MS.gene04462:CDS |
| CATGTCAATTCCAGCATTGA+CGG | 0.495441 | 3.4:+58229200 | None:intergenic |
| CCATAATGGTTGAAACTCCC+TGG | 0.496128 | 3.4:+58229534 | None:intergenic |
| TTGTGATTTCCGACTGGGAA+GGG | 0.496339 | 3.4:-58229278 | MS.gene04462:CDS |
| GATATCAGAATAACCAATGT+TGG | 0.502653 | 3.4:+58228008 | None:intergenic |
| TTGAGAGTAAAGTTTGCTGC+TGG | 0.502814 | 3.4:-58228990 | MS.gene04462:CDS |
| GATATTTCTCGTAAATAACC+TGG | 0.508409 | 3.4:+58228180 | None:intergenic |
| TCATTTGCAATTGTAGCCGT+TGG | 0.508906 | 3.4:-58228125 | MS.gene04462:CDS |
| TCCTTGATACGAGCTTCAAT+GGG | 0.510901 | 3.4:+58231824 | None:intergenic |
| ACGCTTCGAAACCAAGTGAC+TGG | 0.511251 | 3.4:+58227852 | None:intergenic |
| CGCTTCGAAACCAAGTGACT+GGG | 0.512279 | 3.4:+58227853 | None:intergenic |
| GCTAGTATAGGACGCCATAA+TGG | 0.513858 | 3.4:+58229520 | None:intergenic |
| GCGCCCATTCCAGCTAGTAT+AGG | 0.516093 | 3.4:+58229508 | None:intergenic |
| GCTAGATACAGTTGGTTGCA+AGG | 0.521815 | 3.4:-58228934 | MS.gene04462:intron |
| GGAGTTGACCTTTGAAGTCA+TGG | 0.522741 | 3.4:+58227874 | None:intergenic |
| TTATGGCGTCCTATACTAGC+TGG | 0.523575 | 3.4:-58229517 | MS.gene04462:CDS |
| ATTCCATCTCCTTCACTACC+TGG | 0.526085 | 3.4:+58227918 | None:intergenic |
| ATGACTCTTCAGGAGAAGAT+TGG | 0.526834 | 3.4:-58231788 | MS.gene04462:CDS |
| ACCCATTGAAGCTCGTATCA+AGG | 0.527158 | 3.4:-58231825 | MS.gene04462:CDS |
| GGAAGCAGTTCGAAAGTCGT+TGG | 0.527661 | 3.4:-58228777 | MS.gene04462:CDS |
| AAGGTCAACTCCCAGTCACT+TGG | 0.528725 | 3.4:-58227863 | MS.gene04462:CDS |
| TCCATCACCAACAAAATGCT+TGG | 0.529596 | 3.4:+58229649 | None:intergenic |
| AGCTGTCGGAGCTGAAACCC+AGG | 0.529905 | 3.4:-58228198 | MS.gene04462:CDS |
| TTCGGTTAAAAGAAAATGGT+CGG | 0.530265 | 3.4:+58229475 | None:intergenic |
| ACTCATAAGGGTGTGAATGA+AGG | 0.530326 | 3.4:-58229623 | MS.gene04462:CDS |
| ATGTTGGCCTTGGAGCTACT+AGG | 0.530559 | 3.4:-58230484 | MS.gene04462:intron |
| TGGTGATGGAGGTACTCATA+AGG | 0.530719 | 3.4:-58229636 | MS.gene04462:CDS |
| CGTCCTATACTAGCTGGAAT+GGG | 0.531709 | 3.4:-58229511 | MS.gene04462:CDS |
| TAGATGCTCTTGTTGCCGCT+TGG | 0.531832 | 3.4:-58227944 | MS.gene04462:CDS |
| AAGATTATCAGCATGAGTTC+CGG | 0.531909 | 3.4:+58228679 | None:intergenic |
| GAATGCACTGTCATCAGATT+GGG | 0.533604 | 3.4:-58230630 | MS.gene04462:CDS |
| CCTACCTTCCAGCCACAAAA+GGG | 0.540848 | 3.4:+58229823 | None:intergenic |
| GAGAGGTCTTTGATGACAGA+AGG | 0.541378 | 3.4:+58231731 | None:intergenic |
| TCAGCTCTAGAGTCTAGACT+TGG | 0.545525 | 3.4:-58230581 | MS.gene04462:CDS |
| AGATCTTTGCTAGATACAGT+TGG | 0.546954 | 3.4:-58228942 | MS.gene04462:CDS |
| AGCCGACAAAATTCCAACAT+TGG | 0.552997 | 3.4:-58228021 | MS.gene04462:CDS |
| GAAGAGTCATGCGTGAAAGA+AGG | 0.557572 | 3.4:+58231801 | None:intergenic |
| GTCATCAAAGACCTCTCCAT+TGG | 0.558866 | 3.4:-58231725 | MS.gene04462:intron |
| TTTGTGATTTCCGACTGGGA+AGG | 0.559525 | 3.4:-58229279 | MS.gene04462:CDS |
| ATAATATCAGTTCCACGGAA+AGG | 0.560019 | 3.4:+58228053 | None:intergenic |
| GTGGAGGTTGGACTAAAACT+TGG | 0.560572 | 3.4:-58228646 | MS.gene04462:CDS |
| CATGCAGCAACACTATCACT+TGG | 0.561072 | 3.4:+58227813 | None:intergenic |
| ACCGACTTTGTAAACCTCAC+GGG | 0.561236 | 3.4:-58229251 | MS.gene04462:CDS |
| AAAACTTGGTATGGTGCTAG+TGG | 0.563612 | 3.4:-58228632 | MS.gene04462:CDS |
| GGTGATGGAGGTACTCATAA+GGG | 0.569275 | 3.4:-58229635 | MS.gene04462:CDS |
| GACCGACTTTGTAAACCTCA+CGG | 0.569384 | 3.4:-58229252 | MS.gene04462:CDS |
| TAGAAGAATTGGAGCTGCAA+CGG | 0.571117 | 3.4:-58230348 | MS.gene04462:CDS |
| CTTGGTATGGTGCTAGTGGA+AGG | 0.571442 | 3.4:-58228628 | MS.gene04462:CDS |
| ACCCGTGAGGTTTACAAAGT+CGG | 0.571896 | 3.4:+58229250 | None:intergenic |
| TTTGGTAGCCATGACTTCAA+AGG | 0.572278 | 3.4:-58227882 | MS.gene04462:CDS |
| AATATTTACGCAGGTGATGG+TGG | 0.574548 | 3.4:-58229108 | MS.gene04462:intron |
| TACAGGTATGCAAAGATCCT+AGG | 0.574564 | 3.4:-58229956 | MS.gene04462:intron |
| ATTCTTGTATAAGCAATCCA+TGG | 0.574794 | 3.4:+58231856 | None:intergenic |
| CAATGCCTTACCGCGACACA+AGG | 0.575221 | 3.4:+58230284 | None:intergenic |
| AATTCCAGCATTGACGGCAG+AGG | 0.576589 | 3.4:+58229206 | None:intergenic |
| GCGCTTGAAGTTAAAGCAAG+TGG | 0.579980 | 3.4:-58230326 | MS.gene04462:CDS |
| TGAATTGTCGCCCAATGACT+CGG | 0.588536 | 3.4:+58228088 | None:intergenic |
| TATTTAGACTGCATTTCCCA+GGG | 0.588891 | 3.4:-58229551 | MS.gene04462:CDS |
| ATATTTCTCGTAAATAACCT+GGG | 0.593155 | 3.4:+58228181 | None:intergenic |
| ACCTTGCAAACCAGAAACAA+TGG | 0.595678 | 3.4:+58229875 | None:intergenic |
| CATAATGGTTGAAACTCCCT+GGG | 0.597849 | 3.4:+58229535 | None:intergenic |
| AGAGGTCTTTGATGACAGAA+GGG | 0.598226 | 3.4:+58231732 | None:intergenic |
| AGCTTATAATATCAGTTCCA+CGG | 0.600401 | 3.4:+58228048 | None:intergenic |
| GAGCTCACAATCCCTTTCCG+TGG | 0.602469 | 3.4:-58228065 | MS.gene04462:CDS |
| CCGCCACAAGGACATAAACA+TGG | 0.603763 | 3.4:-58229849 | MS.gene04462:CDS |
| GCTTGGTTGCCAGGTAGTGA+AGG | 0.604762 | 3.4:-58227927 | MS.gene04462:CDS |
| GGTTGGACTAAAACTTGGTA+TGG | 0.605118 | 3.4:-58228641 | MS.gene04462:CDS |
| TTGCAAGGTCAGCCGCCACA+AGG | 0.613955 | 3.4:-58229861 | MS.gene04462:CDS |
| TCGGTCAAGCCCTTCCCAGT+CGG | 0.615274 | 3.4:+58229269 | None:intergenic |
| AGCCGTGGCTCTAAAACTAA+CGG | 0.616971 | 3.4:+58227978 | None:intergenic |
| TAACTTTGCTCCTTGTGTCG+CGG | 0.620843 | 3.4:-58230294 | MS.gene04462:intron |
| GGTATGCAAAGATCCTAGGT+GGG | 0.622672 | 3.4:-58229952 | MS.gene04462:CDS |
| AATCTTGGATTTCAATGTGG+AGG | 0.629362 | 3.4:-58228662 | MS.gene04462:CDS |
| GCTCCAAGGCCAACATTGTG+AGG | 0.630444 | 3.4:+58230491 | None:intergenic |
| TATCCATGTTTATGTCCTTG+TGG | 0.630539 | 3.4:+58229846 | None:intergenic |
| TTGCCAGGTAGTGAAGGAGA+TGG | 0.631782 | 3.4:-58227921 | MS.gene04462:CDS |
| GCTAGTGGAAGGATCACAGT+TGG | 0.632128 | 3.4:-58228617 | MS.gene04462:intron |
| TCATAGCATCTTCCCCACCT+AGG | 0.637527 | 3.4:+58229939 | None:intergenic |
| AGGTATGCAAAGATCCTAGG+TGG | 0.641153 | 3.4:-58229953 | MS.gene04462:CDS |
| CAGCTCTAGAGTCTAGACTT+GGG | 0.642393 | 3.4:-58230580 | MS.gene04462:CDS |
| GATGCTGTTAAAGCAGCTGT+CGG | 0.644074 | 3.4:-58228212 | MS.gene04462:CDS |
| GCCACATAGAGATCTTGCAC+GGG | 0.645982 | 3.4:-58228798 | MS.gene04462:CDS |
| ATACTAACCTAGTAGCTCCA+AGG | 0.653710 | 3.4:+58230477 | None:intergenic |
| CCAAAACCAAGAGGAAACAA+AGG | 0.654034 | 3.4:+58227786 | None:intergenic |
| TCCCGTGCAAGATCTCTATG+TGG | 0.660763 | 3.4:+58228797 | None:intergenic |
| GTATGCAAAGATCCTAGGTG+GGG | 0.661100 | 3.4:-58229951 | MS.gene04462:CDS |
| AGCCACATAGAGATCTTGCA+CGG | 0.661216 | 3.4:-58228799 | MS.gene04462:CDS |
| GGAAGCATACTAAGTTCTGG+AGG | 0.661489 | 3.4:-58230668 | MS.gene04462:CDS |
| GATAATCTTGGATTTCAATG+TGG | 0.662758 | 3.4:-58228665 | MS.gene04462:CDS |
| CGTCAATGCTGGAATTGACA+TGG | 0.663099 | 3.4:-58229199 | MS.gene04462:intron |
| GCATCAATTCCATATATGAG+AGG | 0.665889 | 3.4:+58230554 | None:intergenic |
| TAGTTCAGCCCAAAACCAAG+AGG | 0.669530 | 3.4:+58227777 | None:intergenic |
| CCATGTTTATGTCCTTGTGG+CGG | 0.671755 | 3.4:+58229849 | None:intergenic |
| TGGGGTTAGTACCAATGGAG+AGG | 0.673298 | 3.4:+58231714 | None:intergenic |
| GAGGTCTTTGATGACAGAAG+GGG | 0.677985 | 3.4:+58231733 | None:intergenic |
| TCTATCTTTACCAAAAGCCG+TGG | 0.689522 | 3.4:+58227963 | None:intergenic |
| GGCATAAGGAGCTTCACCAA+CGG | 0.690684 | 3.4:+58228109 | None:intergenic |
| TGACAGTGCATTCTCAAATG+GGG | 0.696438 | 3.4:+58230640 | None:intergenic |
| TTCACTACCTGGCAACCAAG+CGG | 0.717614 | 3.4:+58227929 | None:intergenic |
| AGACTTAGAGAGAATACACA+TGG | 0.720636 | 3.4:-58229579 | MS.gene04462:CDS |
| TATCGATAATCTGACCCGTG+AGG | 0.757801 | 3.4:+58229237 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAATTTTCATATACTTTA+GGG | - | chr3.4:58228805-58228824 | MS.gene04462:intron | 10.0% |
| !!! | TTATAATTTTCATATACTTT+AGG | - | chr3.4:58228804-58228823 | MS.gene04462:intron | 10.0% |
| !! | ATAACAATTTACTAAAATGA+TGG | + | chr3.4:58227994-58228013 | None:intergenic | 15.0% |
| !! | ATAACGTATTTATGTAAAAA+TGG | + | chr3.4:58228606-58228625 | None:intergenic | 15.0% |
| !! | ATACATGTTTATTTATTGTT+AGG | - | chr3.4:58231131-58231150 | MS.gene04462:intron | 15.0% |
| !! | ATTTATTTGGTTAAATATAC+AGG | - | chr3.4:58229645-58229664 | MS.gene04462:CDS | 15.0% |
| !! | GAGTAAATTCATATAATTTA+AGG | - | chr3.4:58228775-58228794 | MS.gene04462:CDS | 15.0% |
| !! | TAAAAGATATCAATTGTTAT+CGG | + | chr3.4:58229893-58229912 | None:intergenic | 15.0% |
| !!! | AAACTATAATTTGTAGTTTT+TGG | - | chr3.4:58228541-58228560 | MS.gene04462:intron | 15.0% |
| !!! | ATCATTTTAGTAAATTGTTA+TGG | - | chr3.4:58227993-58228012 | MS.gene04462:CDS | 15.0% |
| !!! | ATTTTTAAACTGAAATCTTT+TGG | + | chr3.4:58229846-58229865 | None:intergenic | 15.0% |
| !! | AGCTAATATTGCAAAAAATT+TGG | + | chr3.4:58230270-58230289 | None:intergenic | 20.0% |
| !! | ATAAAGGAAAGTGATTTATT+TGG | - | chr3.4:58229632-58229651 | MS.gene04462:CDS | 20.0% |
| !! | CACTCAAAAATTAAAATCAA+AGG | + | chr3.4:58228069-58228088 | None:intergenic | 20.0% |
| !! | TGAATTACAACTTAAACATA+AGG | + | chr3.4:58229928-58229947 | None:intergenic | 20.0% |
| !!! | TAGTTTTTCTTTCAAGATTT+CGG | + | chr3.4:58230164-58230183 | None:intergenic | 20.0% |
| !!! | TATGTTTAAGTTGTAATTCA+GGG | - | chr3.4:58229928-58229947 | MS.gene04462:CDS | 20.0% |
| !!! | TGATTATATCTGCATTTTAT+AGG | - | chr3.4:58228929-58228948 | MS.gene04462:intron | 20.0% |
| !!! | TGATTTTGAAAAACTGATTA+TGG | + | chr3.4:58228670-58228689 | None:intergenic | 20.0% |
| !!! | TTATGTTTAAGTTGTAATTC+AGG | - | chr3.4:58229927-58229946 | MS.gene04462:CDS | 20.0% |
| !!! | TTATTTTTTTGTGTTGCTTT+AGG | - | chr3.4:58228887-58228906 | MS.gene04462:intron | 20.0% |
| !!! | TTCAATTTTTTAACACGTTA+TGG | + | chr3.4:58230767-58230786 | None:intergenic | 20.0% |
| !!! | TTTATTGTATCTTTTGGTAT+AGG | - | chr3.4:58228344-58228363 | MS.gene04462:intron | 20.0% |
| !!! | TTTGACTTTATTGTATCTTT+TGG | - | chr3.4:58228338-58228357 | MS.gene04462:intron | 20.0% |
| ! | ACACTATGATGAAAGATAAT+TGG | + | chr3.4:58230460-58230479 | None:intergenic | 25.0% |
| ! | AGATTTCGGTTAAAAGAAAA+TGG | + | chr3.4:58230150-58230169 | None:intergenic | 25.0% |
| ! | ATATGGTATACAAGTTAATG+TGG | + | chr3.4:58231362-58231381 | None:intergenic | 25.0% |
| ! | ATATTTCTCGTAAATAACCT+GGG | + | chr3.4:58231440-58231459 | None:intergenic | 25.0% |
| ! | ATCGTGTTTGGATTATTTAA+AGG | - | chr3.4:58228501-58228520 | MS.gene04462:intron | 25.0% |
| ! | CTATTCAATAATATTTACGC+AGG | - | chr3.4:58230501-58230520 | MS.gene04462:CDS | 25.0% |
| ! | CTGCGTAAATATTATTGAAT+AGG | + | chr3.4:58230503-58230522 | None:intergenic | 25.0% |
| ! | GAAATCTTGAAAGAAAAACT+AGG | - | chr3.4:58230163-58230182 | MS.gene04462:intron | 25.0% |
| ! | TACATACCAAAACACATTTA+TGG | - | chr3.4:58231256-58231275 | MS.gene04462:intron | 25.0% |
| ! | TCTGAACAATAGTTAAAACA+AGG | - | chr3.4:58229547-58229566 | MS.gene04462:CDS | 25.0% |
| ! | TGGATTTAACAATAAATCGA+AGG | + | chr3.4:58228586-58228605 | None:intergenic | 25.0% |
| ! | TTGGTAAGCTATGATATTTA+TGG | - | chr3.4:58231020-58231039 | MS.gene04462:intron | 25.0% |
| ! | TTTCCTTTATTGTCTAGATA+CGG | + | chr3.4:58229622-58229641 | None:intergenic | 25.0% |
| !! | AAGATTTTATGGAACATGTT+AGG | - | chr3.4:58228170-58228189 | MS.gene04462:CDS | 25.0% |
| !! | AAGCTACATTTTATCACTTT+CGG | + | chr3.4:58231196-58231215 | None:intergenic | 25.0% |
| !! | AGACTGTTTAGAAGATTTTA+TGG | - | chr3.4:58228159-58228178 | MS.gene04462:CDS | 25.0% |
| !! | ATGATAATGCTGCTATAATT+TGG | - | chr3.4:58229194-58229213 | MS.gene04462:intron | 25.0% |
| !! | CTTGTCTGATAAGATTTTAA+TGG | - | chr3.4:58231106-58231125 | MS.gene04462:intron | 25.0% |
| !! | GAAAGAAAAACTAGGTTTTA+AGG | - | chr3.4:58230171-58230190 | MS.gene04462:intron | 25.0% |
| !! | TAAGTATTGTTCAGTTTGTT+TGG | - | chr3.4:58228091-58228110 | MS.gene04462:CDS | 25.0% |
| !! | TGTATACCATATACCATTTT+AGG | - | chr3.4:58231370-58231389 | MS.gene04462:intron | 25.0% |
| !!! | AACTTCTTTTTAGTGTATGT+TGG | - | chr3.4:58228425-58228444 | MS.gene04462:intron | 25.0% |
| !!! | ACTTCTTTTTAGTGTATGTT+GGG | - | chr3.4:58228426-58228445 | MS.gene04462:intron | 25.0% |
| !!! | AGAATTGATTTTATCGTGTT+TGG | - | chr3.4:58228489-58228508 | MS.gene04462:intron | 25.0% |
| !!! | CTGCAAAAGAAGTATTAATA+TGG | + | chr3.4:58230801-58230820 | None:intergenic | 25.0% |
| AAACAATGGAAGTCATCTTT+CGG | + | chr3.4:58229732-58229751 | None:intergenic | 30.0% | |
| AAGGATTATCCCAGTATTAT+GGG | + | chr3.4:58229484-58229503 | None:intergenic | 30.0% | |
| AATAATATTTACGCAGGTGA+TGG | - | chr3.4:58230507-58230526 | MS.gene04462:CDS | 30.0% | |
| AATGACTGATTAACTATCAC+TGG | - | chr3.4:58230197-58230216 | MS.gene04462:intron | 30.0% | |
| AATTGTTATCGGAACAGAAA+TGG | + | chr3.4:58229882-58229901 | None:intergenic | 30.0% | |
| AGCTTATAATATCAGTTCCA+CGG | + | chr3.4:58231573-58231592 | None:intergenic | 30.0% | |
| ATAATACTGGGATAATCCTT+CGG | - | chr3.4:58229484-58229503 | MS.gene04462:CDS | 30.0% | |
| ATCTCATCAGATTTGCATAA+CGG | + | chr3.4:58229176-58229195 | None:intergenic | 30.0% | |
| CAAGATTGTTGAACCTAAAA+TGG | + | chr3.4:58231386-58231405 | None:intergenic | 30.0% | |
| CAATAGTTAAAACAAGGACA+TGG | - | chr3.4:58229553-58229572 | MS.gene04462:CDS | 30.0% | |
| CATGGTAATAATAGTGTCTA+TGG | - | chr3.4:58229091-58229110 | MS.gene04462:CDS | 30.0% | |
| GATAATCTTGGATTTCAATG+TGG | - | chr3.4:58230953-58230972 | MS.gene04462:intron | 30.0% | |
| GATATCAGAATAACCAATGT+TGG | + | chr3.4:58231613-58231632 | None:intergenic | 30.0% | |
| GATATTTCTCGTAAATAACC+TGG | + | chr3.4:58231441-58231460 | None:intergenic | 30.0% | |
| GTTGAACCTAAAATGGTATA+TGG | + | chr3.4:58231379-58231398 | None:intergenic | 30.0% | |
| TCTAAGTCAAACTCTGTAAT+GGG | + | chr3.4:58227926-58227945 | None:intergenic | 30.0% | |
| TTCACCTGATTCAATTAAAG+AGG | + | chr3.4:58230569-58230588 | None:intergenic | 30.0% | |
| TTCGGTTAAAAGAAAATGGT+CGG | + | chr3.4:58230146-58230165 | None:intergenic | 30.0% | |
| TTCTAAGTCAAACTCTGTAA+TGG | + | chr3.4:58227927-58227946 | None:intergenic | 30.0% | |
| TTCTTGTTCAATGGAAGAAA+AGG | + | chr3.4:58230899-58230918 | None:intergenic | 30.0% | |
| TTGACCTCTTTAATTGAATC+AGG | - | chr3.4:58230562-58230581 | MS.gene04462:CDS | 30.0% | |
| TTTCCGTATCTAGACAATAA+AGG | - | chr3.4:58229616-58229635 | MS.gene04462:CDS | 30.0% | |
| ! | AACCAATGTTGGAATTTTGT+CGG | + | chr3.4:58231602-58231621 | None:intergenic | 30.0% |
| ! | AAGATTGATTTCAGTGTGTT+TGG | - | chr3.4:58231051-58231070 | MS.gene04462:intron | 30.0% |
| ! | ACATTGGTTATTCTGATATC+TGG | - | chr3.4:58231613-58231632 | MS.gene04462:intron | 30.0% |
| ! | AGCTTTTATGCTTTTGTGTT+CGG | - | chr3.4:58231211-58231230 | MS.gene04462:intron | 30.0% |
| ! | ATTTCGCCATAAATGTGTTT+TGG | + | chr3.4:58231265-58231284 | None:intergenic | 30.0% |
| ! | CATTTTATCACTTTCGGTTT+CGG | + | chr3.4:58231190-58231209 | None:intergenic | 30.0% |
| ! | TGTTCATGAGTTGTTGATTA+TGG | - | chr3.4:58228300-58228319 | MS.gene04462:intron | 30.0% |
| ! | TTTCTATAGAGATGCTGATT+TGG | - | chr3.4:58229246-58229265 | MS.gene04462:CDS | 30.0% |
| ! | TTTTTCTCCGTTGTTAAACA+TGG | - | chr3.4:58231325-58231344 | MS.gene04462:intron | 30.0% |
| !!! | CATTTTAGGTTCAACAATCT+TGG | - | chr3.4:58231384-58231403 | MS.gene04462:intron | 30.0% |
| !!! | GCTGCTTTTACAATATTGTA+GGG | - | chr3.4:58229414-58229433 | MS.gene04462:intron | 30.0% |
| !!! | TCGTTGGTTTTGTTGAAAAA+TGG | - | chr3.4:58230857-58230876 | MS.gene04462:intron | 30.0% |
| !!! | TGCTGCTTTTACAATATTGT+AGG | - | chr3.4:58229413-58229432 | MS.gene04462:intron | 30.0% |
| !!! | TTTTTTGTGTTGCTTTAGGT+TGG | - | chr3.4:58228891-58228910 | MS.gene04462:intron | 30.0% |
| AAGAGCTTATGAAACACCTT+AGG | - | chr3.4:58228274-58228293 | MS.gene04462:intron | 35.0% | |
| AAGATGACTTCCATTGTTTC+TGG | - | chr3.4:58229733-58229752 | MS.gene04462:intron | 35.0% | |
| AAGATTATCAGCATGAGTTC+CGG | + | chr3.4:58230942-58230961 | None:intergenic | 35.0% | |
| AATACAGAATAGTGTGAAGC+AGG | + | chr3.4:58231305-58231324 | None:intergenic | 35.0% | |
| AATCTTGGATTTCAATGTGG+AGG | - | chr3.4:58230956-58230975 | MS.gene04462:intron | 35.0% | |
| ACCATATTTCCTCACAATGT+TGG | - | chr3.4:58229118-58229137 | MS.gene04462:intron | 35.0% | |
| ACGACAACCATGTTTAACAA+CGG | + | chr3.4:58231335-58231354 | None:intergenic | 35.0% | |
| AGACTTAGAGAGAATACACA+TGG | - | chr3.4:58230039-58230058 | MS.gene04462:intron | 35.0% | |
| AGATCTTTGCTAGATACAGT+TGG | - | chr3.4:58230676-58230695 | MS.gene04462:intron | 35.0% | |
| ATAATATCAGTTCCACGGAA+AGG | + | chr3.4:58231568-58231587 | None:intergenic | 35.0% | |
| ATCACTTTATCCTGTACTAG+TGG | - | chr3.4:58228753-58228772 | MS.gene04462:CDS | 35.0% | |
| ATGACAGTGCATTCTCAAAT+GGG | + | chr3.4:58228982-58229001 | None:intergenic | 35.0% | |
| ATTATCCCAGTATTATGGGT+AGG | + | chr3.4:58229480-58229499 | None:intergenic | 35.0% | |
| CACATGCAAGCAATTAATCA+GGG | + | chr3.4:58230744-58230763 | None:intergenic | 35.0% | |
| CATCCAAGAAAGTCAAAAAC+TGG | + | chr3.4:58229221-58229240 | None:intergenic | 35.0% | |
| CTAAGTCAAACTCTGTAATG+GGG | + | chr3.4:58227925-58227944 | None:intergenic | 35.0% | |
| CTCTTAGCATTCTTGTTCAA+TGG | + | chr3.4:58230908-58230927 | None:intergenic | 35.0% | |
| GAAGGATTATCCCAGTATTA+TGG | + | chr3.4:58229485-58229504 | None:intergenic | 35.0% | |
| GCATCAATTCCATATATGAG+AGG | + | chr3.4:58229067-58229086 | None:intergenic | 35.0% | |
| GCTAAGAGAATTCTTGTTAC+CGG | - | chr3.4:58230920-58230939 | MS.gene04462:intron | 35.0% | |
| GGAATCACAGATGTAATCTT+TGG | - | chr3.4:58231718-58231737 | MS.gene04462:intron | 35.0% | |
| GGATAAAGTGATACTTGTGA+AGG | + | chr3.4:58228745-58228764 | None:intergenic | 35.0% | |
| GTTAGGACATGTTCATGAAT+TGG | - | chr3.4:58228187-58228206 | MS.gene04462:CDS | 35.0% | |
| TAATACTGGGATAATCCTTC+GGG | - | chr3.4:58229485-58229504 | MS.gene04462:CDS | 35.0% | |
| TAATATCAGTTCCACGGAAA+GGG | + | chr3.4:58231567-58231586 | None:intergenic | 35.0% | |
| TATCCATGTTTATGTCCTTG+TGG | + | chr3.4:58229775-58229794 | None:intergenic | 35.0% | |
| TATGGAATTGATGCAGTTCA+TGG | - | chr3.4:58229073-58229092 | MS.gene04462:CDS | 35.0% | |
| TATTGACAATTGCTGCTGTA+GGG | - | chr3.4:58230315-58230334 | MS.gene04462:CDS | 35.0% | |
| TATTTAGACTGCATTTCCCA+GGG | - | chr3.4:58230067-58230086 | MS.gene04462:intron | 35.0% | |
| TGAATTTACTCCACTAGTAC+AGG | + | chr3.4:58228766-58228785 | None:intergenic | 35.0% | |
| TGATACTTGTGAAGGTTACT+AGG | + | chr3.4:58228737-58228756 | None:intergenic | 35.0% | |
| TGGGAAATGCAGTCTAAATA+AGG | + | chr3.4:58230067-58230086 | None:intergenic | 35.0% | |
| TTATCCCAGTATTATGGGTA+GGG | + | chr3.4:58229479-58229498 | None:intergenic | 35.0% | |
| TTATTGACAATTGCTGCTGT+AGG | - | chr3.4:58230314-58230333 | MS.gene04462:CDS | 35.0% | |
| TTATTTAGACTGCATTTCCC+AGG | - | chr3.4:58230066-58230085 | MS.gene04462:intron | 35.0% | |
| ! | AGCAAAGATCTGTCACTTAA+TGG | + | chr3.4:58230667-58230686 | None:intergenic | 35.0% |
| ! | ATAGGAAGCATACTAAGTTC+TGG | - | chr3.4:58228947-58228966 | MS.gene04462:CDS | 35.0% |
| ! | ATGGTCAGAATTGATTCTAG+AGG | - | chr3.4:58228462-58228481 | MS.gene04462:intron | 35.0% |
| ! | GTTGGGTTTCAATTTTCGAA+TGG | - | chr3.4:58228443-58228462 | MS.gene04462:intron | 35.0% |
| ! | TAAACATGGATACCCTTTTG+TGG | - | chr3.4:58229783-58229802 | MS.gene04462:intron | 35.0% |
| ! | TACTTTAGGGACTAAGTAGA+AGG | - | chr3.4:58228818-58228837 | MS.gene04462:intron | 35.0% |
| !! | CTTTGTTTCCTCTTGGTTTT+GGG | - | chr3.4:58231833-58231852 | MS.gene04462:CDS | 35.0% |
| !! | GCTGATTTGGTTAGAAGAAT+TGG | - | chr3.4:58229259-58229278 | MS.gene04462:CDS | 35.0% |
| !!! | CAGTTTTTGACTTTCTTGGA+TGG | - | chr3.4:58229219-58229238 | MS.gene04462:CDS | 35.0% |
| AAGGTTACTAGGTGTGTGTT+TGG | + | chr3.4:58228726-58228745 | None:intergenic | 40.0% | |
| AATACTGGGATAATCCTTCG+GGG | - | chr3.4:58229486-58229505 | MS.gene04462:CDS | 40.0% | |
| ACCTTGCAAACCAGAAACAA+TGG | + | chr3.4:58229746-58229765 | None:intergenic | 40.0% | |
| ACGCAGAAAGAGTTCTATGT+AGG | + | chr3.4:58229456-58229475 | None:intergenic | 40.0% | |
| AGAATGCACTGTCATCAGAT+TGG | - | chr3.4:58228987-58229006 | MS.gene04462:CDS | 40.0% | |
| AGCCGACAAAATTCCAACAT+TGG | - | chr3.4:58231597-58231616 | MS.gene04462:intron | 40.0% | |
| ATACTAACCTAGTAGCTCCA+AGG | + | chr3.4:58229144-58229163 | None:intergenic | 40.0% | |
| ATGACTCTTCAGGAGAAGAT+TGG | - | chr3.4:58227830-58227849 | MS.gene04462:CDS | 40.0% | |
| CAACTCATGAACATGTCCTA+AGG | + | chr3.4:58228293-58228312 | None:intergenic | 40.0% | |
| CAGAAAGAGTTCTATGTAGG+AGG | + | chr3.4:58229453-58229472 | None:intergenic | 40.0% | |
| CATAATGGTTGAAACTCCCT+GGG | + | chr3.4:58230086-58230105 | None:intergenic | 40.0% | |
| CCAAAACCAAGAGGAAACAA+AGG | + | chr3.4:58231835-58231854 | None:intergenic | 40.0% | |
| CTTGGGATACCTCTCATATA+TGG | - | chr3.4:58229055-58229074 | MS.gene04462:CDS | 40.0% | |
| GAATGCACTGTCATCAGATT+GGG | - | chr3.4:58228988-58229007 | MS.gene04462:CDS | 40.0% | |
| GATGACAGTGCATTCTCAAA+TGG | + | chr3.4:58228983-58229002 | None:intergenic | 40.0% | |
| GCACATGCAAGCAATTAATC+AGG | + | chr3.4:58230745-58230764 | None:intergenic | 40.0% | |
| GCCAACATTGTGAGGAAATA+TGG | + | chr3.4:58229122-58229141 | None:intergenic | 40.0% | |
| GGAACTCATGCTGATAATCT+TGG | - | chr3.4:58230941-58230960 | MS.gene04462:intron | 40.0% | |
| GGTTGGACTAAAACTTGGTA+TGG | - | chr3.4:58230977-58230996 | MS.gene04462:intron | 40.0% | |
| TACAGGTATGCAAAGATCCT+AGG | - | chr3.4:58229662-58229681 | MS.gene04462:CDS | 40.0% | |
| TAGAAGAATTGGAGCTGCAA+CGG | - | chr3.4:58229270-58229289 | MS.gene04462:CDS | 40.0% | |
| TAGCAACAGTGCGTTCAATT+TGG | + | chr3.4:58227865-58227884 | None:intergenic | 40.0% | |
| TCATTTGCAATTGTAGCCGT+TGG | - | chr3.4:58231493-58231512 | MS.gene04462:intron | 40.0% | |
| TCCATCACCAACAAAATGCT+TGG | + | chr3.4:58229972-58229991 | None:intergenic | 40.0% | |
| TCCTTGATACGAGCTTCAAT+GGG | + | chr3.4:58227797-58227816 | None:intergenic | 40.0% | |
| TCTATCTTTACCAAAAGCCG+TGG | + | chr3.4:58231658-58231677 | None:intergenic | 40.0% | |
| TGACAGTGCATTCTCAAATG+GGG | + | chr3.4:58228981-58229000 | None:intergenic | 40.0% | |
| TGAGAACTCGTTACGTTCTA+TGG | + | chr3.4:58231476-58231495 | None:intergenic | 40.0% | |
| TTGGATTTCAATGTGGAGGT+TGG | - | chr3.4:58230960-58230979 | MS.gene04462:intron | 40.0% | |
| TTTCGGTTTCGGTCAAACTA+AGG | + | chr3.4:58231179-58231198 | None:intergenic | 40.0% | |
| ! | AAAACTTGGTATGGTGCTAG+TGG | - | chr3.4:58230986-58231005 | MS.gene04462:intron | 40.0% |
| ! | AATATTTACGCAGGTGATGG+TGG | - | chr3.4:58230510-58230529 | MS.gene04462:CDS | 40.0% |
| ! | ACTCATAAGGGTGTGAATGA+AGG | - | chr3.4:58229995-58230014 | MS.gene04462:intron | 40.0% |
| ! | AGAGGTCTTTGATGACAGAA+GGG | + | chr3.4:58227889-58227908 | None:intergenic | 40.0% |
| ! | CATGTCAATTCCAGCATTGA+CGG | + | chr3.4:58230421-58230440 | None:intergenic | 40.0% |
| ! | CGTTCTATGGTGTTTTCTGA+TGG | + | chr3.4:58231463-58231482 | None:intergenic | 40.0% |
| ! | TGTAATGGGGTTAGTACCAA+TGG | + | chr3.4:58227912-58227931 | None:intergenic | 40.0% |
| ! | TGTGAACCTTTGTTTCCTCT+TGG | - | chr3.4:58231826-58231845 | MS.gene04462:CDS | 40.0% |
| ! | TTTGGTAGCCATGACTTCAA+AGG | - | chr3.4:58231736-58231755 | MS.gene04462:CDS | 40.0% |
| !! | CCTTTGTTTCCTCTTGGTTT+TGG | - | chr3.4:58231832-58231851 | MS.gene04462:CDS | 40.0% |
| !! | TCCATTGTTTCTGGTTTGCA+AGG | - | chr3.4:58229742-58229761 | MS.gene04462:intron | 40.0% |
| !! | TTGAGAGTAAAGTTTGCTGC+TGG | - | chr3.4:58230628-58230647 | MS.gene04462:CDS | 40.0% |
| !!! | AAGCATTTTGTTGGTGATGG+AGG | - | chr3.4:58229971-58229990 | MS.gene04462:intron | 40.0% |
| !!! | GGACCAGTTTTTGACTTTCT+TGG | - | chr3.4:58229215-58229234 | MS.gene04462:CDS | 40.0% |
| ACCCATTGAAGCTCGTATCA+AGG | - | chr3.4:58227793-58227812 | MS.gene04462:CDS | 45.0% | |
| ACCCGTGAGGTTTACAAAGT+CGG | + | chr3.4:58230371-58230390 | None:intergenic | 45.0% | |
| AGCCACATAGAGATCTTGCA+CGG | - | chr3.4:58230819-58230838 | MS.gene04462:intron | 45.0% | |
| AGGTATGCAAAGATCCTAGG+TGG | - | chr3.4:58229665-58229684 | MS.gene04462:CDS | 45.0% | |
| ATTCCATCTCCTTCACTACC+TGG | + | chr3.4:58231703-58231722 | None:intergenic | 45.0% | |
| CATGCAGCAACACTATCACT+TGG | + | chr3.4:58231808-58231827 | None:intergenic | 45.0% | |
| CCAGGGAGTTTCAACCATTA+TGG | - | chr3.4:58230084-58230103 | MS.gene04462:intron | 45.0% | |
| CCATAATGGTTGAAACTCCC+TGG | + | chr3.4:58230087-58230106 | None:intergenic | 45.0% | |
| CCATGTTTATGTCCTTGTGG+CGG | + | chr3.4:58229772-58229791 | None:intergenic | 45.0% | |
| CGTCAATGCTGGAATTGACA+TGG | - | chr3.4:58230419-58230438 | MS.gene04462:intron | 45.0% | |
| CGTCCTATACTAGCTGGAAT+GGG | - | chr3.4:58230107-58230126 | MS.gene04462:intron | 45.0% | |
| GAAGAGTCATGCGTGAAAGA+AGG | + | chr3.4:58227820-58227839 | None:intergenic | 45.0% | |
| GATGCTGTTAAAGCAGCTGT+CGG | - | chr3.4:58231406-58231425 | MS.gene04462:intron | 45.0% | |
| GATTGGGCTGATATGGTAGA+TGG | - | chr3.4:58229004-58229023 | MS.gene04462:CDS | 45.0% | |
| GCGCTTGAAGTTAAAGCAAG+TGG | - | chr3.4:58229292-58229311 | MS.gene04462:intron | 45.0% | |
| GCTAGATACAGTTGGTTGCA+AGG | - | chr3.4:58230684-58230703 | MS.gene04462:intron | 45.0% | |
| GCTAGTATAGGACGCCATAA+TGG | + | chr3.4:58230101-58230120 | None:intergenic | 45.0% | |
| GGTATGCAAAGATCCTAGGT+GGG | - | chr3.4:58229666-58229685 | MS.gene04462:CDS | 45.0% | |
| GTATGCAAAGATCCTAGGTG+GGG | - | chr3.4:58229667-58229686 | MS.gene04462:CDS | 45.0% | |
| GTCATCAAAGACCTCTCCAT+TGG | - | chr3.4:58227893-58227912 | MS.gene04462:CDS | 45.0% | |
| GTCATCAGATTGGGCTGATA+TGG | - | chr3.4:58228997-58229016 | MS.gene04462:CDS | 45.0% | |
| GTCCTTGATACGAGCTTCAA+TGG | + | chr3.4:58227798-58227817 | None:intergenic | 45.0% | |
| GTGGAGGTTGGACTAAAACT+TGG | - | chr3.4:58230972-58230991 | MS.gene04462:intron | 45.0% | |
| TAACTTTGCTCCTTGTGTCG+CGG | - | chr3.4:58229324-58229343 | MS.gene04462:intron | 45.0% | |
| TAGTTCAGCCCAAAACCAAG+AGG | + | chr3.4:58231844-58231863 | None:intergenic | 45.0% | |
| TATCGATAATCTGACCCGTG+AGG | + | chr3.4:58230384-58230403 | None:intergenic | 45.0% | |
| TCTTTCACGCATGACTCTTC+AGG | - | chr3.4:58227820-58227839 | MS.gene04462:CDS | 45.0% | |
| TGAATTGTCGCCCAATGACT+CGG | + | chr3.4:58231533-58231552 | None:intergenic | 45.0% | |
| TTATGGCGTCCTATACTAGC+TGG | - | chr3.4:58230101-58230120 | MS.gene04462:intron | 45.0% | |
| TTGTGATTTCCGACTGGGAA+GGG | - | chr3.4:58230340-58230359 | MS.gene04462:CDS | 45.0% | |
| TTTGTGATTTCCGACTGGGA+AGG | - | chr3.4:58230339-58230358 | MS.gene04462:CDS | 45.0% | |
| ! | ACCGACTTTGTAAACCTCAC+GGG | - | chr3.4:58230367-58230386 | MS.gene04462:intron | 45.0% |
| ! | ACGAGCTTCAATGGGTTCAT+TGG | + | chr3.4:58227789-58227808 | None:intergenic | 45.0% |
| ! | CGAGCTTCAATGGGTTCATT+GGG | + | chr3.4:58227788-58227807 | None:intergenic | 45.0% |
| ! | GACCGACTTTGTAAACCTCA+CGG | - | chr3.4:58230366-58230385 | MS.gene04462:CDS | 45.0% |
| ! | GAGAGGTCTTTGATGACAGA+AGG | + | chr3.4:58227890-58227909 | None:intergenic | 45.0% |
| ! | GAGGTCTTTGATGACAGAAG+GGG | + | chr3.4:58227888-58227907 | None:intergenic | 45.0% |
| ! | GCATGTGCCAAGCATTTTGT+TGG | - | chr3.4:58229962-58229981 | MS.gene04462:intron | 45.0% |
| ! | GGAAGCATACTAAGTTCTGG+AGG | - | chr3.4:58228950-58228969 | MS.gene04462:CDS | 45.0% |
| ! | TTTCCTCACAATGTTGGCCT+TGG | - | chr3.4:58229124-58229143 | MS.gene04462:intron | 45.0% |
| !! | AGCCGTGGCTCTAAAACTAA+CGG | + | chr3.4:58231643-58231662 | None:intergenic | 45.0% |
| !! | AGGGTTTTGTGATTTCCGAC+TGG | - | chr3.4:58230334-58230353 | MS.gene04462:CDS | 45.0% |
| !! | CAGCTCTAGAGTCTAGACTT+GGG | - | chr3.4:58229038-58229057 | MS.gene04462:CDS | 45.0% |
| !! | GCATCATCGATTCTGCTCAT+TGG | + | chr3.4:58230595-58230614 | None:intergenic | 45.0% |
| !! | GCCAAGCATTTTGTTGGTGA+TGG | - | chr3.4:58229968-58229987 | MS.gene04462:intron | 45.0% |
| !! | GGGTTTTGTGATTTCCGACT+GGG | - | chr3.4:58230335-58230354 | MS.gene04462:CDS | 45.0% |
| !! | GGTGATGGAGGTACTCATAA+GGG | - | chr3.4:58229983-58230002 | MS.gene04462:intron | 45.0% |
| !! | TCAGCTCTAGAGTCTAGACT+TGG | - | chr3.4:58229037-58229056 | MS.gene04462:CDS | 45.0% |
| !! | TGGTGATGGAGGTACTCATA+AGG | - | chr3.4:58229982-58230001 | MS.gene04462:intron | 45.0% |
| !!! | AGTTTTAGAGCCACGGCTTT+TGG | - | chr3.4:58231645-58231664 | MS.gene04462:intron | 45.0% |
| !!! | GACCGTTAGTTTTAGAGCCA+CGG | - | chr3.4:58231638-58231657 | MS.gene04462:intron | 45.0% |
| ACGCTTCGAAACCAAGTGAC+TGG | + | chr3.4:58231769-58231788 | None:intergenic | 50.0% | |
| AGCTCCTTATGCCGAGTCAT+TGG | - | chr3.4:58231519-58231538 | MS.gene04462:intron | 50.0% | |
| ATGATCTTTCCTGTCCCCGA+AGG | + | chr3.4:58229503-58229522 | None:intergenic | 50.0% | |
| CCGCCACAAGGACATAAACA+TGG | - | chr3.4:58229769-58229788 | MS.gene04462:intron | 50.0% | |
| CCTACCTTCCAGCCACAAAA+GGG | + | chr3.4:58229798-58229817 | None:intergenic | 50.0% | |
| CGCTTCGAAACCAAGTGACT+GGG | + | chr3.4:58231768-58231787 | None:intergenic | 50.0% | |
| GCCACATAGAGATCTTGCAC+GGG | - | chr3.4:58230820-58230839 | MS.gene04462:intron | 50.0% | |
| GCGTCCCTACCCATAATACT+GGG | - | chr3.4:58229472-58229491 | MS.gene04462:CDS | 50.0% | |
| GCGTCCTATACTAGCTGGAA+TGG | - | chr3.4:58230106-58230125 | MS.gene04462:intron | 50.0% | |
| GCTAGTGGAAGGATCACAGT+TGG | - | chr3.4:58231001-58231020 | MS.gene04462:intron | 50.0% | |
| GCTCCTTATGCCGAGTCATT+GGG | - | chr3.4:58231520-58231539 | MS.gene04462:intron | 50.0% | |
| GGAAGCAGTTCGAAAGTCGT+TGG | - | chr3.4:58230841-58230860 | MS.gene04462:intron | 50.0% | |
| GGCATAAGGAGCTTCACCAA+CGG | + | chr3.4:58231512-58231531 | None:intergenic | 50.0% | |
| TAGATGCTCTTGTTGCCGCT+TGG | - | chr3.4:58231674-58231693 | MS.gene04462:intron | 50.0% | |
| TCATAGCATCTTCCCCACCT+AGG | + | chr3.4:58229682-58229701 | None:intergenic | 50.0% | |
| TCCCGTGCAAGATCTCTATG+TGG | + | chr3.4:58230824-58230843 | None:intergenic | 50.0% | |
| TGCGTCCCTACCCATAATAC+TGG | - | chr3.4:58229471-58229490 | MS.gene04462:CDS | 50.0% | |
| TTCACTACCTGGCAACCAAG+CGG | + | chr3.4:58231692-58231711 | None:intergenic | 50.0% | |
| TTGCCAGGTAGTGAAGGAGA+TGG | - | chr3.4:58231697-58231716 | MS.gene04462:intron | 50.0% | |
| ! | CATGGATACCCTTTTGTGGC+TGG | - | chr3.4:58229787-58229806 | MS.gene04462:intron | 50.0% |
| ! | CTTGGTATGGTGCTAGTGGA+AGG | - | chr3.4:58230990-58231009 | MS.gene04462:intron | 50.0% |
| ! | GATACCCTTTTGTGGCTGGA+AGG | - | chr3.4:58229791-58229810 | MS.gene04462:intron | 50.0% |
| ! | TGGGGTTAGTACCAATGGAG+AGG | + | chr3.4:58227907-58227926 | None:intergenic | 50.0% |
| !! | AATTCCAGCATTGACGGCAG+AGG | + | chr3.4:58230415-58230434 | None:intergenic | 50.0% |
| !! | ATGTTGGCCTTGGAGCTACT+AGG | - | chr3.4:58229134-58229153 | MS.gene04462:intron | 50.0% |
| ATCTCCTCTGCCGTCAATGC+TGG | - | chr3.4:58230408-58230427 | MS.gene04462:intron | 55.0% | |
| CAATGCCTTACCGCGACACA+AGG | + | chr3.4:58229337-58229356 | None:intergenic | 55.0% | |
| GAGCTCACAATCCCTTTCCG+TGG | - | chr3.4:58231553-58231572 | MS.gene04462:intron | 55.0% | |
| GCCTACCTTCCAGCCACAAA+AGG | + | chr3.4:58229799-58229818 | None:intergenic | 55.0% | |
| GCGCCCATTCCAGCTAGTAT+AGG | + | chr3.4:58230113-58230132 | None:intergenic | 55.0% | |
| GCTCCAAGGCCAACATTGTG+AGG | + | chr3.4:58229130-58229149 | None:intergenic | 55.0% | |
| GCTTGGTTGCCAGGTAGTGA+AGG | - | chr3.4:58231691-58231710 | MS.gene04462:intron | 55.0% | |
| TGGGATAATCCTTCGGGGAC+AGG | - | chr3.4:58229491-58229510 | MS.gene04462:CDS | 55.0% | |
| TTGCTCCTTGTGTCGCGGTA+AGG | - | chr3.4:58229329-58229348 | MS.gene04462:intron | 55.0% | |
| ! | CCCTTTTGTGGCTGGAAGGT+AGG | - | chr3.4:58229795-58229814 | MS.gene04462:intron | 55.0% |
| ! | TCGCCCAATGACTCGGCATA+AGG | + | chr3.4:58231526-58231545 | None:intergenic | 55.0% |
| AGCTGTCGGAGCTGAAACCC+AGG | - | chr3.4:58231420-58231439 | MS.gene04462:intron | 60.0% | |
| TCGGTCAAGCCCTTCCCAGT+CGG | + | chr3.4:58230352-58230371 | None:intergenic | 60.0% | |
| TTGCAAGGTCAGCCGCCACA+AGG | - | chr3.4:58229757-58229776 | MS.gene04462:intron | 60.0% | |
| ! | CTTGTTGCCGCTTGGTTGCC+AGG | - | chr3.4:58231682-58231701 | MS.gene04462:intron | 60.0% |
| !! | CGCAGGTGATGGTGGCTGTC+AGG | - | chr3.4:58230518-58230537 | MS.gene04462:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 58227764 | 58231876 | 58227764 | ID=MS.gene04462 |
| chr3.4 | mRNA | 58227764 | 58231876 | 58227764 | ID=MS.gene04462.t1;Parent=MS.gene04462 |
| chr3.4 | exon | 58231726 | 58231876 | 58231726 | ID=MS.gene04462.t1.exon1;Parent=MS.gene04462.t1 |
| chr3.4 | CDS | 58231726 | 58231876 | 58231726 | ID=cds.MS.gene04462.t1;Parent=MS.gene04462.t1 |
| chr3.4 | exon | 58230485 | 58230689 | 58230485 | ID=MS.gene04462.t1.exon2;Parent=MS.gene04462.t1 |
| chr3.4 | CDS | 58230485 | 58230689 | 58230485 | ID=cds.MS.gene04462.t1;Parent=MS.gene04462.t1 |
| chr3.4 | exon | 58230295 | 58230385 | 58230295 | ID=MS.gene04462.t1.exon3;Parent=MS.gene04462.t1 |
| chr3.4 | CDS | 58230295 | 58230385 | 58230295 | ID=cds.MS.gene04462.t1;Parent=MS.gene04462.t1 |
| chr3.4 | exon | 58229828 | 58229973 | 58229828 | ID=MS.gene04462.t1.exon4;Parent=MS.gene04462.t1 |
| chr3.4 | CDS | 58229828 | 58229973 | 58229828 | ID=cds.MS.gene04462.t1;Parent=MS.gene04462.t1 |
| chr3.4 | exon | 58229448 | 58229691 | 58229448 | ID=MS.gene04462.t1.exon5;Parent=MS.gene04462.t1 |
| chr3.4 | CDS | 58229448 | 58229691 | 58229448 | ID=cds.MS.gene04462.t1;Parent=MS.gene04462.t1 |
| chr3.4 | exon | 58229200 | 58229304 | 58229200 | ID=MS.gene04462.t1.exon6;Parent=MS.gene04462.t1 |
| chr3.4 | CDS | 58229200 | 58229304 | 58229200 | ID=cds.MS.gene04462.t1;Parent=MS.gene04462.t1 |
| chr3.4 | exon | 58228935 | 58229117 | 58228935 | ID=MS.gene04462.t1.exon7;Parent=MS.gene04462.t1 |
| chr3.4 | CDS | 58228935 | 58229117 | 58228935 | ID=cds.MS.gene04462.t1;Parent=MS.gene04462.t1 |
| chr3.4 | exon | 58228618 | 58228819 | 58228618 | ID=MS.gene04462.t1.exon8;Parent=MS.gene04462.t1 |
| chr3.4 | CDS | 58228618 | 58228819 | 58228618 | ID=cds.MS.gene04462.t1;Parent=MS.gene04462.t1 |
| chr3.4 | exon | 58227764 | 58228248 | 58227764 | ID=MS.gene04462.t1.exon9;Parent=MS.gene04462.t1 |
| chr3.4 | CDS | 58227764 | 58228248 | 58227764 | ID=cds.MS.gene04462.t1;Parent=MS.gene04462.t1 |
| Gene Sequence |
| Protein sequence |
