Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88756.t1 | XP_003615587.1 | 94.4 | 603 | 34 | 0 | 1 | 603 | 1 | 603 | 0.00E+00 | 1171.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88756.t1 | A7LXU3 | 30.6 | 654 | 375 | 20 | 8 | 604 | 30 | 661 | 1.6e-74 | 282.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88756.t1 | G7K6A7 | 94.4 | 603 | 34 | 0 | 1 | 603 | 1 | 603 | 0.0e+00 | 1171.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene25841 | MS.gene88756 | PPI |
| MS.gene70763 | MS.gene88756 | PPI |
| MS.gene003292 | MS.gene88756 | PPI |
| MS.gene05603 | MS.gene88756 | PPI |
| MS.gene88756 | MS.gene044157 | PPI |
| MS.gene04049 | MS.gene88756 | PPI |
| MS.gene88756 | MS.gene04462 | PPI |
| MS.gene02092 | MS.gene88756 | PPI |
| MS.gene03078 | MS.gene88756 | PPI |
| MS.gene71046 | MS.gene88756 | PPI |
| MS.gene88756 | MS.gene04573 | PPI |
| MS.gene74550 | MS.gene88756 | PPI |
| MS.gene43773 | MS.gene88756 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88756.t1 | MTR_5g069800 | 94.205 | 604 | 35 | 0 | 1 | 604 | 1 | 604 | 0.0 | 1185 |
| MS.gene88756.t1 | MTR_5g069740 | 90.232 | 604 | 47 | 1 | 1 | 604 | 1 | 592 | 0.0 | 1130 |
| MS.gene88756.t1 | MTR_3g462820 | 75.207 | 605 | 148 | 2 | 1 | 605 | 18 | 620 | 0.0 | 957 |
| MS.gene88756.t1 | MTR_6g028090 | 55.648 | 602 | 254 | 5 | 5 | 601 | 28 | 621 | 0.0 | 693 |
| MS.gene88756.t1 | MTR_6g028100 | 55.907 | 601 | 252 | 5 | 5 | 600 | 28 | 620 | 0.0 | 684 |
| MS.gene88756.t1 | MTR_6g028110 | 55.408 | 601 | 255 | 5 | 5 | 600 | 29 | 621 | 0.0 | 682 |
| MS.gene88756.t1 | MTR_6g028110 | 55.408 | 601 | 255 | 5 | 5 | 600 | 29 | 621 | 0.0 | 681 |
| MS.gene88756.t1 | MTR_3g079750 | 54.833 | 600 | 266 | 4 | 5 | 603 | 28 | 623 | 0.0 | 678 |
| MS.gene88756.t1 | MTR_2g030000 | 55.109 | 597 | 263 | 4 | 5 | 600 | 30 | 622 | 0.0 | 671 |
| MS.gene88756.t1 | MTR_6g028120 | 54.077 | 601 | 263 | 5 | 5 | 600 | 9 | 601 | 0.0 | 665 |
| MS.gene88756.t1 | MTR_7g086030 | 53.512 | 598 | 273 | 4 | 5 | 601 | 4 | 597 | 0.0 | 659 |
| MS.gene88756.t1 | MTR_7g086030 | 53.512 | 598 | 273 | 4 | 5 | 601 | 29 | 622 | 0.0 | 658 |
| MS.gene88756.t1 | MTR_7g086010 | 50.885 | 452 | 211 | 2 | 5 | 447 | 29 | 478 | 3.88e-164 | 478 |
| MS.gene88756.t1 | MTR_5g062650 | 25.732 | 649 | 359 | 25 | 15 | 604 | 60 | 644 | 8.71e-39 | 152 |
| MS.gene88756.t1 | MTR_3g074060 | 25.649 | 655 | 365 | 24 | 5 | 602 | 44 | 633 | 6.97e-38 | 150 |
| MS.gene88756.t1 | MTR_5g062370 | 25.460 | 652 | 374 | 26 | 5 | 604 | 50 | 641 | 3.34e-37 | 148 |
| MS.gene88756.t1 | MTR_5g062320 | 25.000 | 652 | 377 | 25 | 5 | 604 | 48 | 639 | 4.49e-37 | 147 |
| MS.gene88756.t1 | MTR_5g062430 | 26.334 | 581 | 341 | 23 | 86 | 604 | 86 | 641 | 1.04e-36 | 146 |
| MS.gene88756.t1 | MTR_7g109390 | 26.049 | 572 | 331 | 25 | 93 | 604 | 86 | 625 | 6.09e-34 | 138 |
| MS.gene88756.t1 | MTR_4g094285 | 26.825 | 630 | 348 | 28 | 5 | 592 | 54 | 612 | 2.77e-33 | 136 |
| MS.gene88756.t1 | MTR_5g069850 | 86.667 | 60 | 8 | 0 | 529 | 588 | 1 | 60 | 2.64e-32 | 119 |
| MS.gene88756.t1 | MTR_1g087240 | 24.169 | 662 | 363 | 27 | 5 | 604 | 37 | 621 | 1.74e-31 | 130 |
| MS.gene88756.t1 | MTR_5g062370 | 25.210 | 595 | 350 | 24 | 5 | 563 | 50 | 585 | 7.25e-31 | 127 |
| MS.gene88756.t1 | MTR_2g008240 | 25.879 | 626 | 359 | 26 | 5 | 592 | 55 | 613 | 5.63e-29 | 123 |
| MS.gene88756.t1 | MTR_5g030860 | 24.603 | 630 | 333 | 26 | 5 | 573 | 42 | 590 | 1.27e-27 | 119 |
| MS.gene88756.t1 | MTR_1g106860 | 25.043 | 587 | 350 | 28 | 85 | 608 | 73 | 632 | 2.47e-27 | 117 |
| MS.gene88756.t1 | MTR_2g034720 | 25.220 | 567 | 355 | 22 | 86 | 603 | 77 | 623 | 2.91e-27 | 117 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88756.t1 | AT3G47000 | 69.565 | 598 | 178 | 3 | 4 | 600 | 9 | 603 | 0.0 | 877 |
| MS.gene88756.t1 | AT3G47010 | 67.221 | 601 | 193 | 3 | 4 | 603 | 10 | 607 | 0.0 | 857 |
| MS.gene88756.t1 | AT3G47040 | 67.276 | 602 | 193 | 3 | 4 | 604 | 9 | 607 | 0.0 | 857 |
| MS.gene88756.t1 | AT3G47010 | 67.055 | 601 | 193 | 4 | 4 | 603 | 10 | 606 | 0.0 | 852 |
| MS.gene88756.t1 | AT3G47040 | 64.593 | 627 | 193 | 4 | 4 | 604 | 9 | 632 | 0.0 | 843 |
| MS.gene88756.t1 | AT3G47050 | 68.220 | 601 | 179 | 5 | 4 | 600 | 9 | 601 | 0.0 | 842 |
| MS.gene88756.t1 | AT3G47040 | 62.362 | 635 | 202 | 6 | 4 | 604 | 9 | 640 | 0.0 | 807 |
| MS.gene88756.t1 | AT3G47000 | 71.267 | 442 | 126 | 1 | 4 | 445 | 9 | 449 | 0.0 | 676 |
| MS.gene88756.t1 | AT5G04885 | 54.515 | 598 | 266 | 5 | 4 | 600 | 46 | 638 | 0.0 | 674 |
| MS.gene88756.t1 | AT5G04885 | 54.515 | 598 | 266 | 5 | 4 | 600 | 29 | 621 | 0.0 | 673 |
| MS.gene88756.t1 | AT5G04885 | 54.515 | 598 | 266 | 5 | 4 | 600 | 29 | 621 | 0.0 | 673 |
| MS.gene88756.t1 | AT3G47010 | 68.326 | 442 | 139 | 1 | 4 | 445 | 10 | 450 | 0.0 | 652 |
| MS.gene88756.t1 | AT3G47040 | 68.100 | 442 | 140 | 1 | 4 | 445 | 9 | 449 | 0.0 | 650 |
| MS.gene88756.t1 | AT3G47000 | 69.860 | 428 | 126 | 2 | 174 | 600 | 1 | 426 | 0.0 | 640 |
| MS.gene88756.t1 | AT5G20950 | 52.931 | 597 | 275 | 5 | 5 | 600 | 104 | 695 | 0.0 | 635 |
| MS.gene88756.t1 | AT5G20950 | 52.931 | 597 | 275 | 5 | 5 | 600 | 26 | 617 | 0.0 | 635 |
| MS.gene88756.t1 | AT5G20950 | 52.931 | 597 | 275 | 5 | 5 | 600 | 26 | 617 | 0.0 | 635 |
| MS.gene88756.t1 | AT3G47010 | 66.589 | 431 | 140 | 3 | 174 | 603 | 1 | 428 | 0.0 | 618 |
| MS.gene88756.t1 | AT5G20940 | 51.913 | 601 | 279 | 6 | 2 | 600 | 29 | 621 | 0.0 | 610 |
| MS.gene88756.t1 | AT3G47050 | 67.905 | 377 | 114 | 2 | 4 | 377 | 9 | 381 | 0.0 | 543 |
| MS.gene88756.t1 | AT3G62710 | 46.582 | 629 | 285 | 14 | 5 | 600 | 38 | 648 | 0.0 | 530 |
| MS.gene88756.t1 | AT1G02640 | 25.077 | 646 | 365 | 26 | 9 | 602 | 48 | 626 | 8.08e-33 | 134 |
| MS.gene88756.t1 | AT5G49360 | 24.762 | 630 | 380 | 24 | 11 | 602 | 55 | 628 | 6.44e-31 | 129 |
| MS.gene88756.t1 | AT5G64570 | 25.493 | 608 | 345 | 23 | 5 | 573 | 59 | 597 | 3.92e-30 | 126 |
| MS.gene88756.t1 | AT3G19620 | 24.233 | 652 | 380 | 27 | 5 | 604 | 41 | 630 | 3.22e-29 | 124 |
| MS.gene88756.t1 | AT5G09730 | 24.217 | 607 | 354 | 20 | 5 | 573 | 49 | 587 | 6.72e-28 | 119 |
| MS.gene88756.t1 | AT1G78060 | 24.456 | 597 | 360 | 23 | 11 | 573 | 44 | 583 | 8.62e-27 | 116 |
| MS.gene88756.t1 | AT5G10560 | 25.158 | 632 | 338 | 28 | 5 | 573 | 42 | 601 | 1.13e-26 | 115 |
| MS.gene88756.t1 | AT5G64570 | 24.595 | 618 | 358 | 23 | 5 | 583 | 59 | 607 | 2.15e-26 | 114 |
Find 148 sgRNAs with CRISPR-Local
Find 265 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTTATTCCCTCTTGGTTA+TGG | 0.150094 | 5.4:+54855136 | MS.gene88756:CDS |
| GACATGACTTCTTATGTTTC+AGG | 0.158804 | 5.4:+54852197 | MS.gene88756:CDS |
| TTCTTAGCAGTTGCACTATT+TGG | 0.179068 | 5.4:-54851522 | None:intergenic |
| GAACTTGTAATCCCATTTAA+TGG | 0.213541 | 5.4:+54854854 | MS.gene88756:CDS |
| CCTTATTCCCTCTTGGTTAT+GGG | 0.218882 | 5.4:+54855137 | MS.gene88756:CDS |
| ACAATTCCAGCTCCATTAAA+TGG | 0.228949 | 5.4:-54854866 | None:intergenic |
| ATGAATTGTTCATATCTTAA+AGG | 0.230899 | 5.4:-54853128 | None:intergenic |
| TCATTACGTTCTATGAATTC+TGG | 0.242355 | 5.4:-54854767 | None:intergenic |
| CCCATAACCAAGAGGGAATA+AGG | 0.250774 | 5.4:-54855137 | None:intergenic |
| AATTTCAGGCACAACTATAT+TGG | 0.253170 | 5.4:+54854685 | MS.gene88756:intron |
| AGCAAAGATCTGTCAGTTAA+AGG | 0.273779 | 5.4:-54853260 | None:intergenic |
| TAGTAACAGAACGTTCAATT+TGG | 0.293059 | 5.4:-54851344 | None:intergenic |
| ACCAATGGTGAAATCTTTAA+TGG | 0.307869 | 5.4:-54851376 | None:intergenic |
| GCATCAGTACAATAAATTAT+TGG | 0.314084 | 5.4:-54851618 | None:intergenic |
| TTTAAGATATGAACAATTCA+TGG | 0.320591 | 5.4:+54853130 | MS.gene88756:CDS |
| ACAAGCTGTTTCAACCATTA+TGG | 0.332210 | 5.4:+54852525 | MS.gene88756:CDS |
| GGAGATGGAGGTACAGAAAA+AGG | 0.336684 | 5.4:+54852424 | MS.gene88756:CDS |
| TTTAACTGACAGATCTTTGC+TGG | 0.339407 | 5.4:+54853262 | MS.gene88756:CDS |
| ACACTTGTGATTCTAATATC+TGG | 0.340592 | 5.4:+54854914 | MS.gene88756:CDS |
| GATGAATTATGTCAACCTTA+TGG | 0.341677 | 5.4:+54852962 | MS.gene88756:CDS |
| GGATGGACATTTACTAAGTA+TGG | 0.343875 | 5.4:+54854415 | MS.gene88756:CDS |
| CATGTCAATTCCAGCATTAA+TGG | 0.351444 | 5.4:-54853014 | None:intergenic |
| AGTCATGTCTTGGACAATTT+CGG | 0.358561 | 5.4:-54852183 | None:intergenic |
| CACGGTAACAATAACGTCTA+TGG | 0.361228 | 5.4:+54851645 | MS.gene88756:CDS |
| GTCATCTGATTGGGCTGATA+TGG | 0.362204 | 5.4:+54851551 | MS.gene88756:CDS |
| GGAACTCATGCTGATGATAT+CGG | 0.371576 | 5.4:+54854379 | MS.gene88756:CDS |
| GCCTACCTCCCAGCCACAAA+TGG | 0.372066 | 5.4:-54852260 | None:intergenic |
| CTCTTGGCGTTCTTATTCAA+TGG | 0.379608 | 5.4:-54854343 | None:intergenic |
| AGGGGCTACCCATTTGTGGC+TGG | 0.380723 | 5.4:+54852251 | MS.gene88756:CDS |
| AGGTCTGCAAAGATCCTAGA+TGG | 0.390671 | 5.4:+54852129 | MS.gene88756:intron |
| TCTAATATCTGGAAGACCTT+TGG | 0.393745 | 5.4:+54854925 | MS.gene88756:CDS |
| CCATAACCAAGAGGGAATAA+GGG | 0.403111 | 5.4:-54855136 | None:intergenic |
| GCCAAGAGAATCCTTGTTGC+TGG | 0.408515 | 5.4:+54854358 | MS.gene88756:CDS |
| ATCTGGAAGACCTTTGGTCT+TGG | 0.409437 | 5.4:+54854931 | MS.gene88756:CDS |
| GGGGCTACCCATTTGTGGCT+GGG | 0.413579 | 5.4:+54852252 | MS.gene88756:CDS |
| CTTGTTGCGGCATGGTTGCC+TGG | 0.414148 | 5.4:+54854983 | MS.gene88756:CDS |
| TTAGCAGTTGCACTATTTGG+TGG | 0.417251 | 5.4:-54851519 | None:intergenic |
| GAAAGAAAAGCTAGGCTTCA+AGG | 0.425811 | 5.4:+54852612 | MS.gene88756:CDS |
| GGAATCACAGATGTTATCTT+CGG | 0.427323 | 5.4:+54855019 | MS.gene88756:CDS |
| GCATCATCAATCCTGGCTAT+TGG | 0.427539 | 5.4:-54853188 | None:intergenic |
| CATGAATTCACTCCTTCAAC+AGG | 0.428141 | 5.4:-54855106 | None:intergenic |
| GCCATTAAAGATTTCACCAT+TGG | 0.428169 | 5.4:+54851375 | MS.gene88756:CDS |
| CTTCGGGGATCATGACTTCA+AGG | 0.430718 | 5.4:+54855036 | MS.gene88756:CDS |
| AGAAGGAAGTGTCATCTGAT+TGG | 0.432915 | 5.4:+54851541 | MS.gene88756:CDS |
| GTTCTATGAATTCTGGTGTT+GGG | 0.439975 | 5.4:-54854760 | None:intergenic |
| GTAATCCCATTTAATGGAGC+TGG | 0.440659 | 5.4:+54854860 | MS.gene88756:CDS |
| AGTAACAGAACGTTCAATTT+GGG | 0.442472 | 5.4:-54851343 | None:intergenic |
| GAATCACAGATGTTATCTTC+GGG | 0.443316 | 5.4:+54855020 | MS.gene88756:CDS |
| GATGACCCCTTATTCCCTCT+TGG | 0.445616 | 5.4:+54855130 | MS.gene88756:CDS |
| CAATTCCAGCTCCATTAAAT+GGG | 0.449727 | 5.4:-54854865 | None:intergenic |
| ATGACTTTGAAAGAGAAGAT+TGG | 0.449827 | 5.4:+54851312 | MS.gene88756:CDS |
| TCATAGCATCTTCCCCATCT+AGG | 0.450563 | 5.4:-54852143 | None:intergenic |
| TATTGTACTGATGCTATTCA+CGG | 0.453578 | 5.4:+54851627 | MS.gene88756:CDS |
| AACTATATTGGATGCTGCTA+AGG | 0.453736 | 5.4:+54854697 | MS.gene88756:CDS |
| TTTCCTCACAACGTTGGCCT+CGG | 0.456574 | 5.4:+54851678 | MS.gene88756:CDS |
| GAAGGAAGTGTCATCTGATT+GGG | 0.460679 | 5.4:+54851542 | MS.gene88756:CDS |
| CAGCTTGATCAACCTGTTGA+AGG | 0.461725 | 5.4:+54855094 | MS.gene88756:CDS |
| AATGGAATGAAAGGTTTACT+AGG | 0.464263 | 5.4:-54854325 | None:intergenic |
| AAATAGTGCAACTGCTAAGA+AGG | 0.470452 | 5.4:+54851524 | MS.gene88756:CDS |
| TCAAAGTCATAAGAGAAAGA+AGG | 0.472645 | 5.4:-54851299 | None:intergenic |
| TGCTAAGGATGCTGTGGGAC+AGG | 0.475726 | 5.4:+54854712 | MS.gene88756:CDS |
| TGAAGCAGTTCGAAAGTCCT+TGG | 0.476629 | 5.4:+54854279 | MS.gene88756:CDS |
| GATATTAGAATCACAAGTGT+TGG | 0.476636 | 5.4:-54854911 | None:intergenic |
| GTTGACATCTCTAGTTCAAT+CGG | 0.480782 | 5.4:+54853157 | MS.gene88756:CDS |
| TTCTTATTCAATGGAATGAA+AGG | 0.484516 | 5.4:-54854334 | None:intergenic |
| GAACTCATGCTGATGATATC+GGG | 0.485480 | 5.4:+54854380 | MS.gene88756:CDS |
| TCCAAGGGGCTACCCATTTG+TGG | 0.486656 | 5.4:+54852247 | MS.gene88756:CDS |
| TCTAGTGGCCAGATCACAAT+TGG | 0.486949 | 5.4:+54854439 | MS.gene88756:CDS |
| GTCTCATATTCCAGCTGGAA+TGG | 0.487762 | 5.4:+54852547 | MS.gene88756:CDS |
| TCACCTCCACACTCAGCATA+GGG | 0.490280 | 5.4:-54854824 | None:intergenic |
| CGTTCTATGAATTCTGGTGT+TGG | 0.490481 | 5.4:-54854761 | None:intergenic |
| TTGACATCTCTAGTTCAATC+GGG | 0.490633 | 5.4:+54853158 | MS.gene88756:CDS |
| ATATTAGAATCACAAGTGTT+GGG | 0.490789 | 5.4:-54854910 | None:intergenic |
| ACTCTTCTAAACCAAGTCAT+TGG | 0.496062 | 5.4:-54855067 | None:intergenic |
| GCCACAAATGGGTAGCCCCT+TGG | 0.496947 | 5.4:-54852248 | None:intergenic |
| TCCAGCAACAAGGATTCTCT+TGG | 0.497425 | 5.4:-54854359 | None:intergenic |
| GGTGGACGGGTTTCAGAAGC+TGG | 0.498559 | 5.4:+54851572 | MS.gene88756:CDS |
| ATTCCATTTCCTTCACTACC+AGG | 0.500207 | 5.4:-54855001 | None:intergenic |
| GATCCACATGGCCCCGTATG+TGG | 0.501410 | 5.4:+54852492 | MS.gene88756:CDS |
| AAGGCTAACCAATTGTGATC+TGG | 0.501758 | 5.4:-54854447 | None:intergenic |
| AAACATAAGAAGTCATGTCT+TGG | 0.503886 | 5.4:-54852193 | None:intergenic |
| CTCAACGGCATCATCAATCC+TGG | 0.505700 | 5.4:-54853195 | None:intergenic |
| TTATGGTCTCATATTCCAGC+TGG | 0.513411 | 5.4:+54852542 | MS.gene88756:CDS |
| ATATCTACTTCCATTAATGC+TGG | 0.513950 | 5.4:+54853004 | MS.gene88756:CDS |
| TAACGATAATCTGAACCATA+AGG | 0.514827 | 5.4:-54852977 | None:intergenic |
| CTGGCGCTTGAATCACGGTT+AGG | 0.517230 | 5.4:+54851591 | MS.gene88756:CDS |
| AGATCTTTGCTGGATACTGT+TGG | 0.518240 | 5.4:+54853272 | MS.gene88756:CDS |
| GAGTTTGACTCCATTCCAGC+TGG | 0.519495 | 5.4:-54852557 | None:intergenic |
| CCTACCTCCCAGCCACAAAT+GGG | 0.519639 | 5.4:-54852259 | None:intergenic |
| GCTGGATACTGTTGGTTGCA+AGG | 0.519750 | 5.4:+54853280 | MS.gene88756:CDS |
| TCACTTGAACTTAGAGCAAG+TGG | 0.523247 | 5.4:+54851958 | MS.gene88756:CDS |
| TTTGTGATTTCTGATTGGGA+GGG | 0.538328 | 5.4:+54852935 | MS.gene88756:CDS |
| AGGGTAAACTACCAATGACT+TGG | 0.544683 | 5.4:+54855056 | MS.gene88756:CDS |
| GTTCTATACAATCCACATAC+GGG | 0.546133 | 5.4:-54852504 | None:intergenic |
| GCTGGAATATGAGACCATAA+TGG | 0.546993 | 5.4:-54852539 | None:intergenic |
| ATTGGGCTGATATGGTGGAC+GGG | 0.547205 | 5.4:+54851559 | MS.gene88756:CDS |
| AACCTCCAGAAAATCATCCA+AGG | 0.549496 | 5.4:+54852231 | MS.gene88756:CDS |
| TGTTCTATACAATCCACATA+CGG | 0.551403 | 5.4:-54852505 | None:intergenic |
| TCTTATGTTTCAGGTTTGCA+AGG | 0.552090 | 5.4:+54852206 | MS.gene88756:CDS |
| GTGAAATCTTTAATGGCAGA+AGG | 0.554246 | 5.4:-54851369 | None:intergenic |
| TCGGGTATCAATGTGGAGGA+TGG | 0.556709 | 5.4:+54854398 | MS.gene88756:CDS |
| CATTAATGCTGGAATTGACA+TGG | 0.559007 | 5.4:+54853015 | MS.gene88756:CDS |
| GATTGGGCTGATATGGTGGA+CGG | 0.559902 | 5.4:+54851558 | MS.gene88756:CDS |
| GGATGCTGCTAAGGATGCTG+TGG | 0.564728 | 5.4:+54854706 | MS.gene88756:CDS |
| TTGCCTGGTAGTGAAGGAAA+TGG | 0.568579 | 5.4:+54854998 | MS.gene88756:CDS |
| GCGAGCTTCAACTGGTTCAG+AGG | 0.570591 | 5.4:-54851268 | None:intergenic |
| TCCAACAAAATGTCTAGCAC+AGG | 0.571832 | 5.4:-54852404 | None:intergenic |
| TAGAAGCTCTTGTTGCGGCA+TGG | 0.572751 | 5.4:+54854975 | MS.gene88756:CDS |
| CGAGCTTCAACTGGTTCAGA+GGG | 0.575194 | 5.4:-54851267 | None:intergenic |
| GGCTTCACCAATAGCAACAA+TGG | 0.575663 | 5.4:-54854801 | None:intergenic |
| AGAAGCTGGCGCTTGAATCA+CGG | 0.580598 | 5.4:+54851586 | MS.gene88756:CDS |
| CACTCTTAAAATCCGCTCAA+CGG | 0.581745 | 5.4:-54853210 | None:intergenic |
| GCTACCCATTTGTGGCTGGG+AGG | 0.583997 | 5.4:+54852255 | MS.gene88756:CDS |
| ATCTGATTGGGCTGATATGG+TGG | 0.585355 | 5.4:+54851554 | MS.gene88756:CDS |
| GGTCTGCAAAGATCCTAGAT+GGG | 0.587399 | 5.4:+54852130 | MS.gene88756:intron |
| CAGCATGAGTTCCAGCAACA+AGG | 0.588717 | 5.4:-54854369 | None:intergenic |
| ACCTCCAGAAAATCATCCAA+GGG | 0.588939 | 5.4:+54852232 | MS.gene88756:CDS |
| GTCACCTCCACACTCAGCAT+AGG | 0.590732 | 5.4:-54854825 | None:intergenic |
| GCTCCGAGGCCAACGTTGTG+AGG | 0.591912 | 5.4:-54851681 | None:intergenic |
| ACTATATTTCCTCACAACGT+TGG | 0.594556 | 5.4:+54851672 | MS.gene88756:CDS |
| TTTACTAAGTATGGATCTAG+TGG | 0.597699 | 5.4:+54854424 | MS.gene88756:CDS |
| ACCTCCACACTCAGCATAGG+GGG | 0.603901 | 5.4:-54854822 | None:intergenic |
| AAACTTTGTTCCAAGACCAA+AGG | 0.605055 | 5.4:-54854941 | None:intergenic |
| CATAACCAAGAGGGAATAAG+GGG | 0.624050 | 5.4:-54855135 | None:intergenic |
| ACGTTGGCCTCGGAGCAACT+AGG | 0.636583 | 5.4:+54851688 | MS.gene88756:CDS |
| AAGCTAGCCCATAACCAAGA+GGG | 0.637396 | 5.4:-54855144 | None:intergenic |
| GCATGGTTGCCTGGTAGTGA+AGG | 0.640507 | 5.4:+54854992 | MS.gene88756:CDS |
| AATCCACATACGGGGCCATG+TGG | 0.640866 | 5.4:-54852495 | None:intergenic |
| GGATTGATGATGCCGTTGAG+CGG | 0.645720 | 5.4:+54853198 | MS.gene88756:CDS |
| AGATGCCTTACAGATACACT+AGG | 0.649143 | 5.4:-54852000 | None:intergenic |
| TGACATCTCTAGTTCAATCG+GGG | 0.650471 | 5.4:+54853159 | MS.gene88756:CDS |
| CACCTCCACACTCAGCATAG+GGG | 0.652884 | 5.4:-54854823 | None:intergenic |
| TTCGGGGATCATGACTTCAA+GGG | 0.656885 | 5.4:+54855037 | MS.gene88756:CDS |
| GTCTGCAAAGATCCTAGATG+GGG | 0.658282 | 5.4:+54852131 | MS.gene88756:CDS |
| TGGAATGGAGTCAAACTCCA+CGG | 0.665143 | 5.4:+54852562 | MS.gene88756:CDS |
| GACATCTCTAGTTCAATCGG+GGG | 0.673392 | 5.4:+54853160 | MS.gene88756:CDS |
| TTCAGAGGGATTCATATACA+CGG | 0.676769 | 5.4:-54851253 | None:intergenic |
| GATGCTGCTAAGGATGCTGT+GGG | 0.685349 | 5.4:+54854707 | MS.gene88756:CDS |
| TAATCAGAAATCGATGACCG+TGG | 0.688040 | 5.4:-54852579 | None:intergenic |
| AATCACAGATGTTATCTTCG+GGG | 0.692931 | 5.4:+54855021 | MS.gene88756:CDS |
| TAAGCTAGCCCATAACCAAG+AGG | 0.693183 | 5.4:-54855145 | None:intergenic |
| TTCTATACAATCCACATACG+GGG | 0.694901 | 5.4:-54852503 | None:intergenic |
| AAAAGTAGAAGCTCTTGTTG+CGG | 0.696874 | 5.4:+54854970 | MS.gene88756:CDS |
| GATGATATCGGGTATCAATG+TGG | 0.699497 | 5.4:+54854391 | MS.gene88756:CDS |
| CCTCCAGAAAATCATCCAAG+GGG | 0.706643 | 5.4:+54852233 | MS.gene88756:CDS |
| GATATCGGGTATCAATGTGG+AGG | 0.736689 | 5.4:+54854394 | MS.gene88756:CDS |
| ACACAAACCTAGTTGCTCCG+AGG | 0.747671 | 5.4:-54851695 | None:intergenic |
| AGACTTAGAGAAGATCCACA+TGG | 0.753967 | 5.4:+54852480 | MS.gene88756:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGATACAAAAAAATAAAA+AGG | - | chr5.4:54854469-54854488 | None:intergenic | 10.0% |
| !!! | AAGTATTGATTTTTTTAAAA+CGG | - | chr5.4:54852312-54852331 | None:intergenic | 10.0% |
| !!! | ATTGATTAATTTGATATTTT+TGG | + | chr5.4:54853892-54853911 | MS.gene88756:intron | 10.0% |
| !!! | TTGATTAATTTGATATTTTT+GGG | + | chr5.4:54853893-54853912 | MS.gene88756:intron | 10.0% |
| !! | AAAAATGGTTTATTAAAACT+TGG | + | chr5.4:54853826-54853845 | MS.gene88756:intron | 15.0% |
| !! | AAAATGGTTTATTAAAACTT+GGG | + | chr5.4:54853827-54853846 | MS.gene88756:intron | 15.0% |
| !! | AATCTATGTTAAAATACTAT+GGG | - | chr5.4:54853056-54853075 | None:intergenic | 15.0% |
| !! | TACATTAAAAAAAGTTTATG+AGG | - | chr5.4:54853719-54853738 | None:intergenic | 15.0% |
| !!! | ATATAGTTTTTTTTGTTTGA+AGG | + | chr5.4:54854172-54854191 | MS.gene88756:intron | 15.0% |
| !!! | TCTGTTTTTAATTGTTTATA+TGG | - | chr5.4:54854577-54854596 | None:intergenic | 15.0% |
| !!! | TTTTAATTGTTTATATGGAT+AGG | - | chr5.4:54854572-54854591 | None:intergenic | 15.0% |
| !! | AAAAATCAAAGCTTGAATTT+AGG | - | chr5.4:54851877-54851896 | None:intergenic | 20.0% |
| !! | AAATGGTTTATTAAAACTTG+GGG | + | chr5.4:54853828-54853847 | MS.gene88756:intron | 20.0% |
| !! | ATACATATAATTAGTACTTC+AGG | + | chr5.4:54852368-54852387 | MS.gene88756:intron | 20.0% |
| !! | ATCATATCAAGTAACAAAAA+TGG | + | chr5.4:54853811-54853830 | MS.gene88756:intron | 20.0% |
| !! | ATCTATGTTAAAATACTATG+GGG | - | chr5.4:54853055-54853074 | None:intergenic | 20.0% |
| !! | ATGAATTGTTCATATCTTAA+AGG | - | chr5.4:54853131-54853150 | None:intergenic | 20.0% |
| !! | CAATCTATGTTAAAATACTA+TGG | - | chr5.4:54853057-54853076 | None:intergenic | 20.0% |
| !! | TAAGAAATGAAAGTAGTATA+AGG | - | chr5.4:54851435-54851454 | None:intergenic | 20.0% |
| !! | TAATTGCATAACATTAGAAA+TGG | - | chr5.4:54854514-54854533 | None:intergenic | 20.0% |
| !! | TCAATAACAAATTCAAAAGT+TGG | - | chr5.4:54852029-54852048 | None:intergenic | 20.0% |
| !!! | AAGCTTTGATTTTTCATTAT+TGG | + | chr5.4:54851883-54851902 | MS.gene88756:intron | 20.0% |
| !!! | ATCAAAACAATTTTCATTGA+GGG | + | chr5.4:54854604-54854623 | MS.gene88756:intron | 20.0% |
| !!! | GTAGATATATTTTTTCTTTC+TGG | + | chr5.4:54852634-54852653 | MS.gene88756:intron | 20.0% |
| !!! | TATTGATTTTTTTAAAACGG+TGG | - | chr5.4:54852309-54852328 | None:intergenic | 20.0% |
| !!! | TATTGCACTTTTAAAATTTC+AGG | + | chr5.4:54854671-54854690 | MS.gene88756:intron | 20.0% |
| !!! | TCAAATAAAGCATTTTGTTA+AGG | + | chr5.4:54852892-54852911 | MS.gene88756:intron | 20.0% |
| !!! | TTTAAGATATGAACAATTCA+TGG | + | chr5.4:54853130-54853149 | MS.gene88756:CDS | 20.0% |
| ! | AACATTCATTCTCTTCATAT+AGG | - | chr5.4:54852752-54852771 | None:intergenic | 25.0% |
| ! | AATCTCAACTATAGCTATTA+CGG | + | chr5.4:54853580-54853599 | MS.gene88756:intron | 25.0% |
| ! | ACGAAATTCATATCAAAAAC+AGG | - | chr5.4:54854018-54854037 | None:intergenic | 25.0% |
| ! | ACTACTTTCATTTCTTAGTA+TGG | + | chr5.4:54851438-54851457 | MS.gene88756:intron | 25.0% |
| ! | AGAATACTATCAAATTTGTG+TGG | - | chr5.4:54853606-54853625 | None:intergenic | 25.0% |
| ! | ATATTAGAATCACAAGTGTT+GGG | - | chr5.4:54854913-54854932 | None:intergenic | 25.0% |
| ! | ATTGGAAAGATGCAAATTAA+AGG | - | chr5.4:54851750-54851769 | None:intergenic | 25.0% |
| ! | CAAAAAACAACACAATTTGA+TGG | - | chr5.4:54853443-54853462 | None:intergenic | 25.0% |
| ! | GCATCAGTACAATAAATTAT+TGG | - | chr5.4:54851621-54851640 | None:intergenic | 25.0% |
| ! | TTCTTATTCAATGGAATGAA+AGG | - | chr5.4:54854337-54854356 | None:intergenic | 25.0% |
| ! | TTGAAAAAAATATCCCACAT+TGG | - | chr5.4:54854137-54854156 | None:intergenic | 25.0% |
| !! | AAACAGGATTTTAAGCATTT+TGG | - | chr5.4:54854002-54854021 | None:intergenic | 25.0% |
| !! | AACAGGATTTTAAGCATTTT+GGG | - | chr5.4:54854001-54854020 | None:intergenic | 25.0% |
| !! | GATCAAAACAATTTTCATTG+AGG | + | chr5.4:54854603-54854622 | MS.gene88756:intron | 25.0% |
| !!! | GATATTTTGAAAGAAAAGCT+AGG | + | chr5.4:54852604-54852623 | MS.gene88756:CDS | 25.0% |
| !!! | TTTATTTTCGTGAATACTCA+CGG | + | chr5.4:54853963-54853982 | MS.gene88756:intron | 25.0% |
| AAACATAAGAAGTCATGTCT+TGG | - | chr5.4:54852196-54852215 | None:intergenic | 30.0% | |
| AAATCTAAGAGAACTAGATC+AGG | + | chr5.4:54852773-54852792 | MS.gene88756:intron | 30.0% | |
| AATGGAATGAAAGGTTTACT+AGG | - | chr5.4:54854328-54854347 | None:intergenic | 30.0% | |
| AATTGATCCATGAGAAACTT+GGG | + | chr5.4:54853772-54853791 | MS.gene88756:intron | 30.0% | |
| AATTTCAGGCACAACTATAT+TGG | + | chr5.4:54854685-54854704 | MS.gene88756:intron | 30.0% | |
| ACACTTGTGATTCTAATATC+TGG | + | chr5.4:54854914-54854933 | MS.gene88756:CDS | 30.0% | |
| ACACTTGTGTTCTAACATAT+TGG | + | chr5.4:54854228-54854247 | MS.gene88756:intron | 30.0% | |
| ACCAATGGTGAAATCTTTAA+TGG | - | chr5.4:54851379-54851398 | None:intergenic | 30.0% | |
| ACTTGCATATGTGAATGAAT+AGG | + | chr5.4:54852109-54852128 | MS.gene88756:intron | 30.0% | |
| AGTAACAGAACGTTCAATTT+GGG | - | chr5.4:54851346-54851365 | None:intergenic | 30.0% | |
| AGTTCATTAACACAAGTCAA+TGG | + | chr5.4:54853668-54853687 | MS.gene88756:intron | 30.0% | |
| ATATATTCGTGAACATATGC+AGG | + | chr5.4:54853097-54853116 | MS.gene88756:intron | 30.0% | |
| ATATCTACTTCCATTAATGC+TGG | + | chr5.4:54853004-54853023 | MS.gene88756:CDS | 30.0% | |
| ATTCGACAAAAATGTATGCA+TGG | - | chr5.4:54852340-54852359 | None:intergenic | 30.0% | |
| CATCTAGTACTCACTTTAAA+TGG | + | chr5.4:54853404-54853423 | MS.gene88756:intron | 30.0% | |
| GAACTTGTAATCCCATTTAA+TGG | + | chr5.4:54854854-54854873 | MS.gene88756:CDS | 30.0% | |
| GATATTAGAATCACAAGTGT+TGG | - | chr5.4:54854914-54854933 | None:intergenic | 30.0% | |
| GATGAATTATGTCAACCTTA+TGG | + | chr5.4:54852962-54852981 | MS.gene88756:CDS | 30.0% | |
| GTTCATTAACACAAGTCAAT+GGG | + | chr5.4:54853669-54853688 | MS.gene88756:intron | 30.0% | |
| TAACGATAATCTGAACCATA+AGG | - | chr5.4:54852980-54852999 | None:intergenic | 30.0% | |
| TAGTAACAGAACGTTCAATT+TGG | - | chr5.4:54851347-54851366 | None:intergenic | 30.0% | |
| TATTCTACTCGAAACTGAAA+TGG | + | chr5.4:54853620-54853639 | MS.gene88756:intron | 30.0% | |
| TCAAAGTCATAAGAGAAAGA+AGG | - | chr5.4:54851302-54851321 | None:intergenic | 30.0% | |
| TCATTACGTTCTATGAATTC+TGG | - | chr5.4:54854770-54854789 | None:intergenic | 30.0% | |
| TGTTCTATACAATCCACATA+CGG | - | chr5.4:54852508-54852527 | None:intergenic | 30.0% | |
| TTTACTAAGTATGGATCTAG+TGG | + | chr5.4:54854424-54854443 | MS.gene88756:CDS | 30.0% | |
| ! | ACAGAAAAAGGTGTAAATGA+GGG | + | chr5.4:54852436-54852455 | MS.gene88756:CDS | 30.0% |
| ! | AGATAGTAATAGAGTACCAA+TGG | - | chr5.4:54851394-54851413 | None:intergenic | 30.0% |
| ! | ATGACTTTGAAAGAGAAGAT+TGG | + | chr5.4:54851312-54851331 | MS.gene88756:CDS | 30.0% |
| ! | ATTATTTAGCTCAAGCTTGT+CGG | + | chr5.4:54853927-54853946 | MS.gene88756:intron | 30.0% |
| ! | TACAGAAAAAGGTGTAAATG+AGG | + | chr5.4:54852435-54852454 | MS.gene88756:CDS | 30.0% |
| ! | TATTGTACTGATGCTATTCA+CGG | + | chr5.4:54851627-54851646 | MS.gene88756:CDS | 30.0% |
| ! | TCCTTGTATTTTGCAACTAA+GGG | + | chr5.4:54851481-54851500 | MS.gene88756:intron | 30.0% |
| ! | TTCTGGAAATTGATCGTTTA+TGG | + | chr5.4:54852651-54852670 | MS.gene88756:intron | 30.0% |
| !! | GATTTTAAGCATTTTGGGAA+CGG | - | chr5.4:54853996-54854015 | None:intergenic | 30.0% |
| !! | GCATGTTTGTATTGACTTAT+AGG | + | chr5.4:54851787-54851806 | MS.gene88756:intron | 30.0% |
| !! | TACATTGATAGCGTTTGTAT+AGG | - | chr5.4:54854104-54854123 | None:intergenic | 30.0% |
| !!! | CATCTTTCCAATTTTAGCTA+TGG | + | chr5.4:54851758-54851777 | MS.gene88756:intron | 30.0% |
| !!! | TCCTTGGTTTTGTTGAAAAA+CGG | + | chr5.4:54854295-54854314 | MS.gene88756:CDS | 30.0% |
| AAAAGTAGAAGCTCTTGTTG+CGG | + | chr5.4:54854970-54854989 | MS.gene88756:CDS | 35.0% | |
| AAAATGCATAATCACCTGTG+AGG | + | chr5.4:54851833-54851852 | MS.gene88756:intron | 35.0% | |
| AAACTTTGTTCCAAGACCAA+AGG | - | chr5.4:54854944-54854963 | None:intergenic | 35.0% | |
| AAATAGTGCAACTGCTAAGA+AGG | + | chr5.4:54851524-54851543 | MS.gene88756:CDS | 35.0% | |
| AAATGCATAATCACCTGTGA+GGG | + | chr5.4:54851834-54851853 | MS.gene88756:intron | 35.0% | |
| AACTATATTGGATGCTGCTA+AGG | + | chr5.4:54854697-54854716 | MS.gene88756:CDS | 35.0% | |
| AATCACAGATGTTATCTTCG+GGG | + | chr5.4:54855021-54855040 | MS.gene88756:CDS | 35.0% | |
| AATGGGAGAAAGGAAGAAAA+AGG | + | chr5.4:54853686-54853705 | MS.gene88756:intron | 35.0% | |
| ACAATTCCAGCTCCATTAAA+TGG | - | chr5.4:54854869-54854888 | None:intergenic | 35.0% | |
| ACTATATTTCCTCACAACGT+TGG | + | chr5.4:54851672-54851691 | MS.gene88756:CDS | 35.0% | |
| ACTCTTCTAAACCAAGTCAT+TGG | - | chr5.4:54855070-54855089 | None:intergenic | 35.0% | |
| AGCAAAGATCTGTCAGTTAA+AGG | - | chr5.4:54853263-54853282 | None:intergenic | 35.0% | |
| AGTCATGTCTTGGACAATTT+CGG | - | chr5.4:54852186-54852205 | None:intergenic | 35.0% | |
| ATTACCACCGAAGAGATTAT+CGG | + | chr5.4:54853485-54853504 | MS.gene88756:intron | 35.0% | |
| CAAGTGTAGCAATTGAAAGT+TGG | - | chr5.4:54854215-54854234 | None:intergenic | 35.0% | |
| CAATTCCAGCTCCATTAAAT+GGG | - | chr5.4:54854868-54854887 | None:intergenic | 35.0% | |
| CAATTGATCCATGAGAAACT+TGG | + | chr5.4:54853771-54853790 | MS.gene88756:intron | 35.0% | |
| CATGTCAATTCCAGCATTAA+TGG | - | chr5.4:54853017-54853036 | None:intergenic | 35.0% | |
| CATTAATGCTGGAATTGACA+TGG | + | chr5.4:54853015-54853034 | MS.gene88756:CDS | 35.0% | |
| CCTTTGTCCATAGCTAAAAT+TGG | - | chr5.4:54851768-54851787 | None:intergenic | 35.0% | |
| GAATCACAGATGTTATCTTC+GGG | + | chr5.4:54855020-54855039 | MS.gene88756:CDS | 35.0% | |
| GACATGACTTCTTATGTTTC+AGG | + | chr5.4:54852197-54852216 | MS.gene88756:CDS | 35.0% | |
| GCCATTAAAGATTTCACCAT+TGG | + | chr5.4:54851375-54851394 | MS.gene88756:CDS | 35.0% | |
| GGAAATTGATCGTTTATGGA+TGG | + | chr5.4:54852655-54852674 | MS.gene88756:intron | 35.0% | |
| GGAATCACAGATGTTATCTT+CGG | + | chr5.4:54855019-54855038 | MS.gene88756:CDS | 35.0% | |
| GGATGGACATTTACTAAGTA+TGG | + | chr5.4:54854415-54854434 | MS.gene88756:CDS | 35.0% | |
| GTAACAGTGAACTAACGAAT+TGG | - | chr5.4:54853523-54853542 | None:intergenic | 35.0% | |
| GTATGTGATCTATCCAATGT+GGG | + | chr5.4:54854121-54854140 | MS.gene88756:intron | 35.0% | |
| GTGAAATCTTTAATGGCAGA+AGG | - | chr5.4:54851372-54851391 | None:intergenic | 35.0% | |
| GTTCTATACAATCCACATAC+GGG | - | chr5.4:54852507-54852526 | None:intergenic | 35.0% | |
| GTTCTATGAATTCTGGTGTT+GGG | - | chr5.4:54854763-54854782 | None:intergenic | 35.0% | |
| TCACAAAATCAGCACTCTAA+AGG | + | chr5.4:54854056-54854075 | MS.gene88756:intron | 35.0% | |
| TCCCTTAGTTGCAAAATACA+AGG | - | chr5.4:54851485-54851504 | None:intergenic | 35.0% | |
| TCTAATATCTGGAAGACCTT+TGG | + | chr5.4:54854925-54854944 | MS.gene88756:CDS | 35.0% | |
| TGTATGTGATCTATCCAATG+TGG | + | chr5.4:54854120-54854139 | MS.gene88756:intron | 35.0% | |
| TTCAGAGGGATTCATATACA+CGG | - | chr5.4:54851256-54851275 | None:intergenic | 35.0% | |
| TTCTATACAATCCACATACG+GGG | - | chr5.4:54852506-54852525 | None:intergenic | 35.0% | |
| TTCTTAGCAGTTGCACTATT+TGG | - | chr5.4:54851525-54851544 | None:intergenic | 35.0% | |
| TTTAACTGACAGATCTTTGC+TGG | + | chr5.4:54853262-54853281 | MS.gene88756:CDS | 35.0% | |
| TTTGTGATTTCTGATTGGGA+GGG | + | chr5.4:54852935-54852954 | MS.gene88756:CDS | 35.0% | |
| ! | AAAATCAGCACTCTAAAGGA+TGG | + | chr5.4:54854060-54854079 | MS.gene88756:intron | 35.0% |
| ! | AAGGTCAATTTTCCACTGTA+GGG | + | chr5.4:54852911-54852930 | MS.gene88756:intron | 35.0% |
| ! | ACAAGCTGTTTCAACCATTA+TGG | + | chr5.4:54852525-54852544 | MS.gene88756:CDS | 35.0% |
| ! | CAGAAAAAGGTGTAAATGAG+GGG | + | chr5.4:54852437-54852456 | MS.gene88756:CDS | 35.0% |
| ! | CTCCTTGTATTTTGCAACTA+AGG | + | chr5.4:54851480-54851499 | MS.gene88756:intron | 35.0% |
| ! | GTTGACATCTCTAGTTCAAT+CGG | + | chr5.4:54853157-54853176 | MS.gene88756:CDS | 35.0% |
| ! | TAAGGTCAATTTTCCACTGT+AGG | + | chr5.4:54852910-54852929 | MS.gene88756:intron | 35.0% |
| ! | TCTTCGGTGGTAATTTTTCA+AGG | - | chr5.4:54853479-54853498 | None:intergenic | 35.0% |
| ! | TCTTTTGCCATTGTTGCTAT+TGG | + | chr5.4:54854794-54854813 | MS.gene88756:CDS | 35.0% |
| ! | TTGACATCTCTAGTTCAATC+GGG | + | chr5.4:54853158-54853177 | MS.gene88756:CDS | 35.0% |
| ! | TTTTGTGATTTCTGATTGGG+AGG | + | chr5.4:54852934-54852953 | MS.gene88756:CDS | 35.0% |
| !! | AGGGTTTTGTGATTTCTGAT+TGG | + | chr5.4:54852930-54852949 | MS.gene88756:intron | 35.0% |
| !! | ATTGATAGCGTTTGTATAGG+AGG | - | chr5.4:54854101-54854120 | None:intergenic | 35.0% |
| !! | GGGTTTTGTGATTTCTGATT+GGG | + | chr5.4:54852931-54852950 | MS.gene88756:intron | 35.0% |
| !! | TCCGTTTTTCAACAAAACCA+AGG | - | chr5.4:54854299-54854318 | None:intergenic | 35.0% |
| !! | TCTTATGTTTCAGGTTTGCA+AGG | + | chr5.4:54852206-54852225 | MS.gene88756:CDS | 35.0% |
| !!! | AGTGCTGATTTTGTGATGAT+CGG | - | chr5.4:54854052-54854071 | None:intergenic | 35.0% |
| !!! | CCAATTTTAGCTATGGACAA+AGG | + | chr5.4:54851765-54851784 | MS.gene88756:intron | 35.0% |
| !!! | GGTTTTGTTGAAAAACGGAA+AGG | + | chr5.4:54854300-54854319 | MS.gene88756:CDS | 35.0% |
| AACACAAGTCAATGGGAGAA+AGG | + | chr5.4:54853676-54853695 | MS.gene88756:intron | 40.0% | |
| AACCTCCAGAAAATCATCCA+AGG | + | chr5.4:54852231-54852250 | MS.gene88756:CDS | 40.0% | |
| AAGGCTAACCAATTGTGATC+TGG | - | chr5.4:54854450-54854469 | None:intergenic | 40.0% | |
| AATGCATAATCACCTGTGAG+GGG | + | chr5.4:54851835-54851854 | MS.gene88756:intron | 40.0% | |
| ACCTCCAGAAAATCATCCAA+GGG | + | chr5.4:54852232-54852251 | MS.gene88756:CDS | 40.0% | |
| ACTCAACCCGATAATCTCTT+CGG | - | chr5.4:54853495-54853514 | None:intergenic | 40.0% | |
| ACTTGGGAACAAGGATAACA+CGG | + | chr5.4:54853788-54853807 | MS.gene88756:intron | 40.0% | |
| AGACTTAGAGAAGATCCACA+TGG | + | chr5.4:54852480-54852499 | MS.gene88756:CDS | 40.0% | |
| AGATCTTTGCTGGATACTGT+TGG | + | chr5.4:54853272-54853291 | MS.gene88756:CDS | 40.0% | |
| AGATGCCTTACAGATACACT+AGG | - | chr5.4:54852003-54852022 | None:intergenic | 40.0% | |
| AGGGTAAACTACCAATGACT+TGG | + | chr5.4:54855056-54855075 | MS.gene88756:CDS | 40.0% | |
| ATTCCATTTCCTTCACTACC+AGG | - | chr5.4:54855004-54855023 | None:intergenic | 40.0% | |
| CAAGGTAAGTGAAGTTTAGC+TGG | + | chr5.4:54853298-54853317 | MS.gene88756:intron | 40.0% | |
| CACGGTAACAATAACGTCTA+TGG | + | chr5.4:54851645-54851664 | MS.gene88756:CDS | 40.0% | |
| CACTCTTAAAATCCGCTCAA+CGG | - | chr5.4:54853213-54853232 | None:intergenic | 40.0% | |
| CATAACCAAGAGGGAATAAG+GGG | - | chr5.4:54855138-54855157 | None:intergenic | 40.0% | |
| CATGAATTCACTCCTTCAAC+AGG | - | chr5.4:54855109-54855128 | None:intergenic | 40.0% | |
| CCATAACCAAGAGGGAATAA+GGG | - | chr5.4:54855139-54855158 | None:intergenic | 40.0% | |
| CCTTATTCCCTCTTGGTTAT+GGG | + | chr5.4:54855137-54855156 | MS.gene88756:CDS | 40.0% | |
| CGTTCTATGAATTCTGGTGT+TGG | - | chr5.4:54854764-54854783 | None:intergenic | 40.0% | |
| CTCTTGGCGTTCTTATTCAA+TGG | - | chr5.4:54854346-54854365 | None:intergenic | 40.0% | |
| GAAAGAAAAGCTAGGCTTCA+AGG | + | chr5.4:54852612-54852631 | MS.gene88756:CDS | 40.0% | |
| GAAATCACAAAACCCTACAG+TGG | - | chr5.4:54852926-54852945 | None:intergenic | 40.0% | |
| GAACTCATGCTGATGATATC+GGG | + | chr5.4:54854380-54854399 | MS.gene88756:CDS | 40.0% | |
| GATGATATCGGGTATCAATG+TGG | + | chr5.4:54854391-54854410 | MS.gene88756:CDS | 40.0% | |
| GCTGGAATATGAGACCATAA+TGG | - | chr5.4:54852542-54852561 | None:intergenic | 40.0% | |
| GGAACTCATGCTGATGATAT+CGG | + | chr5.4:54854379-54854398 | MS.gene88756:CDS | 40.0% | |
| GTAATCCCATTTAATGGAGC+TGG | + | chr5.4:54854860-54854879 | MS.gene88756:CDS | 40.0% | |
| TAATCAGAAATCGATGACCG+TGG | - | chr5.4:54852582-54852601 | None:intergenic | 40.0% | |
| TAGCTCCTAGTGTATCTGTA+AGG | + | chr5.4:54851995-54852014 | MS.gene88756:intron | 40.0% | |
| TCACTTGAACTTAGAGCAAG+TGG | + | chr5.4:54851958-54851977 | MS.gene88756:CDS | 40.0% | |
| TCCAACAAAATGTCTAGCAC+AGG | - | chr5.4:54852407-54852426 | None:intergenic | 40.0% | |
| TTAAAACTTGGGGAGCAAGT+TGG | + | chr5.4:54853838-54853857 | MS.gene88756:intron | 40.0% | |
| TTACCACCGAAGAGATTATC+GGG | + | chr5.4:54853486-54853505 | MS.gene88756:intron | 40.0% | |
| TTAGCAGTTGCACTATTTGG+TGG | - | chr5.4:54851522-54851541 | None:intergenic | 40.0% | |
| TTATGGTCTCATATTCCAGC+TGG | + | chr5.4:54852542-54852561 | MS.gene88756:CDS | 40.0% | |
| ! | AGACATTTTGTTGGAGATGG+AGG | + | chr5.4:54852412-54852431 | MS.gene88756:CDS | 40.0% |
| ! | CTGATTTTGTGATGATCGGA+TGG | - | chr5.4:54854048-54854067 | None:intergenic | 40.0% |
| ! | GCTAGACATTTTGTTGGAGA+TGG | + | chr5.4:54852409-54852428 | MS.gene88756:CDS | 40.0% |
| ! | TGACATCTCTAGTTCAATCG+GGG | + | chr5.4:54853159-54853178 | MS.gene88756:CDS | 40.0% |
| ! | TTTTTGATGCGAGCTTCAAC+TGG | - | chr5.4:54851279-54851298 | None:intergenic | 40.0% |
| !! | AGAAGGAAGTGTCATCTGAT+TGG | + | chr5.4:54851541-54851560 | MS.gene88756:CDS | 40.0% |
| !! | GAAGGAAGTGTCATCTGATT+GGG | + | chr5.4:54851542-54851561 | MS.gene88756:CDS | 40.0% |
| !! | TTGGATGATTTTCTGGAGGT+TGG | - | chr5.4:54852232-54852251 | None:intergenic | 40.0% |
| AAGCTAGCCCATAACCAAGA+GGG | - | chr5.4:54855147-54855166 | None:intergenic | 45.0% | |
| AGGTCTGCAAAGATCCTAGA+TGG | + | chr5.4:54852129-54852148 | MS.gene88756:intron | 45.0% | |
| ATAGGAGGAGAGGAGTCTTA+AGG | - | chr5.4:54854086-54854105 | None:intergenic | 45.0% | |
| ATCTGATTGGGCTGATATGG+TGG | + | chr5.4:54851554-54851573 | MS.gene88756:CDS | 45.0% | |
| ATCTGGAAGACCTTTGGTCT+TGG | + | chr5.4:54854931-54854950 | MS.gene88756:CDS | 45.0% | |
| CAGCTTGATCAACCTGTTGA+AGG | + | chr5.4:54855094-54855113 | MS.gene88756:CDS | 45.0% | |
| CCATGAGAAACTTGGGAACA+AGG | + | chr5.4:54853779-54853798 | MS.gene88756:intron | 45.0% | |
| CCCATAACCAAGAGGGAATA+AGG | - | chr5.4:54855140-54855159 | None:intergenic | 45.0% | |
| CCCTTATTCCCTCTTGGTTA+TGG | + | chr5.4:54855136-54855155 | MS.gene88756:CDS | 45.0% | |
| CCTCCAGAAAATCATCCAAG+GGG | + | chr5.4:54852233-54852252 | MS.gene88756:CDS | 45.0% | |
| CCTTGTTCCCAAGTTTCTCA+TGG | - | chr5.4:54853782-54853801 | None:intergenic | 45.0% | |
| GATATCGGGTATCAATGTGG+AGG | + | chr5.4:54854394-54854413 | MS.gene88756:CDS | 45.0% | |
| GCATCATCAATCCTGGCTAT+TGG | - | chr5.4:54853191-54853210 | None:intergenic | 45.0% | |
| GGCTTCACCAATAGCAACAA+TGG | - | chr5.4:54854804-54854823 | None:intergenic | 45.0% | |
| GGTCTGCAAAGATCCTAGAT+GGG | + | chr5.4:54852130-54852149 | MS.gene88756:intron | 45.0% | |
| GTCATCTGATTGGGCTGATA+TGG | + | chr5.4:54851551-54851570 | MS.gene88756:CDS | 45.0% | |
| GTCTCATATTCCAGCTGGAA+TGG | + | chr5.4:54852547-54852566 | MS.gene88756:CDS | 45.0% | |
| GTCTGCAAAGATCCTAGATG+GGG | + | chr5.4:54852131-54852150 | MS.gene88756:CDS | 45.0% | |
| TAAGCTAGCCCATAACCAAG+AGG | - | chr5.4:54855148-54855167 | None:intergenic | 45.0% | |
| TAGCGTTTGTATAGGAGGAG+AGG | - | chr5.4:54854096-54854115 | None:intergenic | 45.0% | |
| TCATAGCATCTTCCCCATCT+AGG | - | chr5.4:54852146-54852165 | None:intergenic | 45.0% | |
| TCCAGCAACAAGGATTCTCT+TGG | - | chr5.4:54854362-54854381 | None:intergenic | 45.0% | |
| TCGTGAACATATGCAGGTGA+TGG | + | chr5.4:54853103-54853122 | MS.gene88756:intron | 45.0% | |
| TCTAGTGGCCAGATCACAAT+TGG | + | chr5.4:54854439-54854458 | MS.gene88756:CDS | 45.0% | |
| TGAAGCAGTTCGAAAGTCCT+TGG | + | chr5.4:54854279-54854298 | MS.gene88756:CDS | 45.0% | |
| TGGAATGGAGTCAAACTCCA+CGG | + | chr5.4:54852562-54852581 | MS.gene88756:CDS | 45.0% | |
| TTCGGGGATCATGACTTCAA+GGG | + | chr5.4:54855037-54855056 | MS.gene88756:CDS | 45.0% | |
| ! | GACATCTCTAGTTCAATCGG+GGG | + | chr5.4:54853160-54853179 | MS.gene88756:CDS | 45.0% |
| ! | GCCTGTGCTAGACATTTTGT+TGG | + | chr5.4:54852403-54852422 | MS.gene88756:CDS | 45.0% |
| ! | GGAGATGGAGGTACAGAAAA+AGG | + | chr5.4:54852424-54852443 | MS.gene88756:CDS | 45.0% |
| ! | TAGCCCCTTGGATGATTTTC+TGG | - | chr5.4:54852239-54852258 | None:intergenic | 45.0% |
| ! | TTGCCTGGTAGTGAAGGAAA+TGG | + | chr5.4:54854998-54855017 | MS.gene88756:CDS | 45.0% |
| AAATGCACATGACCCCTCAC+AGG | - | chr5.4:54851850-54851869 | None:intergenic | 50.0% | |
| ACACAAACCTAGTTGCTCCG+AGG | - | chr5.4:54851698-54851717 | None:intergenic | 50.0% | |
| AGAAGCTGGCGCTTGAATCA+CGG | + | chr5.4:54851586-54851605 | MS.gene88756:CDS | 50.0% | |
| CAACCCGATAATCTCTTCGG+TGG | - | chr5.4:54853492-54853511 | None:intergenic | 50.0% | |
| CAGCATGAGTTCCAGCAACA+AGG | - | chr5.4:54854372-54854391 | None:intergenic | 50.0% | |
| CTCAACGGCATCATCAATCC+TGG | - | chr5.4:54853198-54853217 | None:intergenic | 50.0% | |
| CTTCGGGGATCATGACTTCA+AGG | + | chr5.4:54855036-54855055 | MS.gene88756:CDS | 50.0% | |
| GAGTTTGACTCCATTCCAGC+TGG | - | chr5.4:54852560-54852579 | None:intergenic | 50.0% | |
| GATGACCCCTTATTCCCTCT+TGG | + | chr5.4:54855130-54855149 | MS.gene88756:CDS | 50.0% | |
| GATGCTGCTAAGGATGCTGT+GGG | + | chr5.4:54854707-54854726 | MS.gene88756:CDS | 50.0% | |
| GCCAAGAGAATCCTTGTTGC+TGG | + | chr5.4:54854358-54854377 | MS.gene88756:CDS | 50.0% | |
| TAGAAGCTCTTGTTGCGGCA+TGG | + | chr5.4:54854975-54854994 | MS.gene88756:CDS | 50.0% | |
| TCACCTCCACACTCAGCATA+GGG | - | chr5.4:54854827-54854846 | None:intergenic | 50.0% | |
| TCGGGTATCAATGTGGAGGA+TGG | + | chr5.4:54854398-54854417 | MS.gene88756:CDS | 50.0% | |
| ! | CCCCTTGGATGATTTTCTGG+AGG | - | chr5.4:54852236-54852255 | None:intergenic | 50.0% |
| ! | CGAGCTTCAACTGGTTCAGA+GGG | - | chr5.4:54851270-54851289 | None:intergenic | 50.0% |
| ! | GATTGGGCTGATATGGTGGA+CGG | + | chr5.4:54851558-54851577 | MS.gene88756:CDS | 50.0% |
| ! | GCTGGATACTGTTGGTTGCA+AGG | + | chr5.4:54853280-54853299 | MS.gene88756:CDS | 50.0% |
| ! | TTTCCTCACAACGTTGGCCT+CGG | + | chr5.4:54851678-54851697 | MS.gene88756:CDS | 50.0% |
| !! | ATTGGGCTGATATGGTGGAC+GGG | + | chr5.4:54851559-54851578 | MS.gene88756:CDS | 50.0% |
| !! | GGATTGATGATGCCGTTGAG+CGG | + | chr5.4:54853198-54853217 | MS.gene88756:CDS | 50.0% |
| AATCCACATACGGGGCCATG+TGG | - | chr5.4:54852498-54852517 | None:intergenic | 55.0% | |
| ACCTCCACACTCAGCATAGG+GGG | - | chr5.4:54854825-54854844 | None:intergenic | 55.0% | |
| CACCTCCACACTCAGCATAG+GGG | - | chr5.4:54854826-54854845 | None:intergenic | 55.0% | |
| CCTACCTCCCAGCCACAAAT+GGG | - | chr5.4:54852262-54852281 | None:intergenic | 55.0% | |
| CTGGCGCTTGAATCACGGTT+AGG | + | chr5.4:54851591-54851610 | MS.gene88756:CDS | 55.0% | |
| GGATGCTGCTAAGGATGCTG+TGG | + | chr5.4:54854706-54854725 | MS.gene88756:CDS | 55.0% | |
| GTCACCTCCACACTCAGCAT+AGG | - | chr5.4:54854828-54854847 | None:intergenic | 55.0% | |
| TCCAAGGGGCTACCCATTTG+TGG | + | chr5.4:54852247-54852266 | MS.gene88756:CDS | 55.0% | |
| TGCTAAGGATGCTGTGGGAC+AGG | + | chr5.4:54854712-54854731 | MS.gene88756:CDS | 55.0% | |
| ! | GCATGGTTGCCTGGTAGTGA+AGG | + | chr5.4:54854992-54855011 | MS.gene88756:CDS | 55.0% |
| ! | GCGAGCTTCAACTGGTTCAG+AGG | - | chr5.4:54851271-54851290 | None:intergenic | 55.0% |
| AGGGGCTACCCATTTGTGGC+TGG | + | chr5.4:54852251-54852270 | MS.gene88756:CDS | 60.0% | |
| CCCATTTGTGGCTGGGAGGT+AGG | + | chr5.4:54852259-54852278 | MS.gene88756:intron | 60.0% | |
| CTTGTTGCGGCATGGTTGCC+TGG | + | chr5.4:54854983-54855002 | MS.gene88756:CDS | 60.0% | |
| GAAGCCCCCTATGCTGAGTG+TGG | + | chr5.4:54854818-54854837 | MS.gene88756:CDS | 60.0% | |
| GATCCACATGGCCCCGTATG+TGG | + | chr5.4:54852492-54852511 | MS.gene88756:CDS | 60.0% | |
| GCCACAAATGGGTAGCCCCT+TGG | - | chr5.4:54852251-54852270 | None:intergenic | 60.0% | |
| GCCTACCTCCCAGCCACAAA+TGG | - | chr5.4:54852263-54852282 | None:intergenic | 60.0% | |
| GCTACCCATTTGTGGCTGGG+AGG | + | chr5.4:54852255-54852274 | MS.gene88756:CDS | 60.0% | |
| GGGGCTACCCATTTGTGGCT+GGG | + | chr5.4:54852252-54852271 | MS.gene88756:CDS | 60.0% | |
| TGGCTGGGAGGTAGGCAGAT+AGG | + | chr5.4:54852267-54852286 | MS.gene88756:intron | 60.0% | |
| ! | ACGTTGGCCTCGGAGCAACT+AGG | + | chr5.4:54851688-54851707 | MS.gene88756:CDS | 60.0% |
| ! | GGTGGACGGGTTTCAGAAGC+TGG | + | chr5.4:54851572-54851591 | MS.gene88756:CDS | 60.0% |
| !! | CGGGGGAAGTACCAATAGCC+AGG | + | chr5.4:54853177-54853196 | MS.gene88756:CDS | 60.0% |
| GCCCCCTATGCTGAGTGTGG+AGG | + | chr5.4:54854821-54854840 | MS.gene88756:CDS | 65.0% | |
| GCTCCGAGGCCAACGTTGTG+AGG | - | chr5.4:54851684-54851703 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 54851246 | 54855192 | 54851246 | ID=MS.gene88756 |
| chr5.4 | mRNA | 54851246 | 54855192 | 54851246 | ID=MS.gene88756.t1;Parent=MS.gene88756 |
| chr5.4 | exon | 54851246 | 54851396 | 54851246 | ID=MS.gene88756.t1.exon1;Parent=MS.gene88756.t1 |
| chr5.4 | CDS | 54851246 | 54851396 | 54851246 | ID=cds.MS.gene88756.t1;Parent=MS.gene88756.t1 |
| chr5.4 | exon | 54851502 | 54851709 | 54851502 | ID=MS.gene88756.t1.exon2;Parent=MS.gene88756.t1 |
| chr5.4 | CDS | 54851502 | 54851709 | 54851502 | ID=cds.MS.gene88756.t1;Parent=MS.gene88756.t1 |
| chr5.4 | exon | 54851921 | 54852011 | 54851921 | ID=MS.gene88756.t1.exon3;Parent=MS.gene88756.t1 |
| chr5.4 | CDS | 54851921 | 54852011 | 54851921 | ID=cds.MS.gene88756.t1;Parent=MS.gene88756.t1 |
| chr5.4 | exon | 54852131 | 54852276 | 54852131 | ID=MS.gene88756.t1.exon4;Parent=MS.gene88756.t1 |
| chr5.4 | CDS | 54852131 | 54852276 | 54852131 | ID=cds.MS.gene88756.t1;Parent=MS.gene88756.t1 |
| chr5.4 | exon | 54852390 | 54852633 | 54852390 | ID=MS.gene88756.t1.exon5;Parent=MS.gene88756.t1 |
| chr5.4 | CDS | 54852390 | 54852633 | 54852390 | ID=cds.MS.gene88756.t1;Parent=MS.gene88756.t1 |
| chr5.4 | exon | 54852932 | 54853036 | 54852932 | ID=MS.gene88756.t1.exon6;Parent=MS.gene88756.t1 |
| chr5.4 | CDS | 54852932 | 54853036 | 54852932 | ID=cds.MS.gene88756.t1;Parent=MS.gene88756.t1 |
| chr5.4 | exon | 54853119 | 54853301 | 54853119 | ID=MS.gene88756.t1.exon7;Parent=MS.gene88756.t1 |
| chr5.4 | CDS | 54853119 | 54853301 | 54853119 | ID=cds.MS.gene88756.t1;Parent=MS.gene88756.t1 |
| chr5.4 | exon | 54854259 | 54854460 | 54854259 | ID=MS.gene88756.t1.exon8;Parent=MS.gene88756.t1 |
| chr5.4 | CDS | 54854259 | 54854460 | 54854259 | ID=cds.MS.gene88756.t1;Parent=MS.gene88756.t1 |
| chr5.4 | exon | 54854693 | 54855192 | 54854693 | ID=MS.gene88756.t1.exon9;Parent=MS.gene88756.t1 |
| chr5.4 | CDS | 54854693 | 54855192 | 54854693 | ID=cds.MS.gene88756.t1;Parent=MS.gene88756.t1 |
| Gene Sequence |
| Protein sequence |
