Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04573.t1 | XP_013460158.1 | 98.2 | 603 | 11 | 0 | 1 | 603 | 18 | 620 | 0.00E+00 | 1209.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04573.t1 | A7LXU3 | 32.1 | 652 | 366 | 20 | 8 | 602 | 30 | 661 | 2.1e-82 | 308.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04573.t1 | A0A072UWG8 | 98.2 | 603 | 11 | 0 | 1 | 603 | 18 | 620 | 0.0e+00 | 1209.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene71046 | MS.gene04573 | PPI |
| MS.gene044157 | MS.gene04573 | PPI |
| MS.gene74550 | MS.gene04573 | PPI |
| MS.gene43773 | MS.gene04573 | PPI |
| MS.gene25841 | MS.gene04573 | PPI |
| MS.gene70763 | MS.gene04573 | PPI |
| MS.gene003292 | MS.gene04573 | PPI |
| MS.gene05603 | MS.gene04573 | PPI |
| MS.gene88756 | MS.gene04573 | PPI |
| MS.gene04049 | MS.gene04573 | PPI |
| MS.gene04462 | MS.gene04573 | PPI |
| MS.gene02092 | MS.gene04573 | PPI |
| MS.gene03078 | MS.gene04573 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04573.t1 | MTR_3g462820 | 98.176 | 603 | 11 | 0 | 1 | 603 | 18 | 620 | 0.0 | 1224 |
| MS.gene04573.t1 | MTR_5g069800 | 74.833 | 600 | 149 | 2 | 1 | 598 | 1 | 600 | 0.0 | 950 |
| MS.gene04573.t1 | MTR_5g069740 | 74.333 | 600 | 140 | 3 | 1 | 598 | 1 | 588 | 0.0 | 924 |
| MS.gene04573.t1 | MTR_6g028090 | 58.725 | 596 | 243 | 3 | 5 | 599 | 28 | 621 | 0.0 | 734 |
| MS.gene04573.t1 | MTR_6g028100 | 58.319 | 595 | 245 | 3 | 5 | 598 | 28 | 620 | 0.0 | 723 |
| MS.gene04573.t1 | MTR_3g079750 | 58.054 | 596 | 245 | 4 | 5 | 598 | 28 | 620 | 0.0 | 721 |
| MS.gene04573.t1 | MTR_6g028120 | 58.557 | 596 | 242 | 4 | 5 | 598 | 9 | 601 | 0.0 | 719 |
| MS.gene04573.t1 | MTR_2g030000 | 57.479 | 595 | 250 | 3 | 5 | 598 | 30 | 622 | 0.0 | 718 |
| MS.gene04573.t1 | MTR_7g086030 | 57.479 | 595 | 250 | 3 | 5 | 598 | 4 | 596 | 0.0 | 712 |
| MS.gene04573.t1 | MTR_7g086030 | 57.479 | 595 | 250 | 3 | 5 | 598 | 29 | 621 | 0.0 | 711 |
| MS.gene04573.t1 | MTR_6g028110 | 57.143 | 595 | 252 | 3 | 5 | 598 | 29 | 621 | 0.0 | 711 |
| MS.gene04573.t1 | MTR_6g028110 | 57.143 | 595 | 252 | 3 | 5 | 598 | 29 | 621 | 0.0 | 709 |
| MS.gene04573.t1 | MTR_7g086010 | 56.532 | 444 | 181 | 2 | 5 | 438 | 29 | 470 | 0.0 | 523 |
| MS.gene04573.t1 | MTR_3g074060 | 27.169 | 611 | 337 | 22 | 5 | 572 | 44 | 589 | 4.28e-41 | 159 |
| MS.gene04573.t1 | MTR_5g062320 | 26.348 | 649 | 370 | 25 | 5 | 602 | 48 | 639 | 1.78e-40 | 157 |
| MS.gene04573.t1 | MTR_5g062430 | 26.348 | 649 | 370 | 24 | 5 | 602 | 50 | 641 | 3.48e-40 | 157 |
| MS.gene04573.t1 | MTR_5g062650 | 27.399 | 646 | 370 | 24 | 5 | 602 | 50 | 644 | 4.97e-40 | 156 |
| MS.gene04573.t1 | MTR_5g062370 | 26.194 | 649 | 371 | 26 | 5 | 602 | 50 | 641 | 7.32e-40 | 156 |
| MS.gene04573.t1 | MTR_7g109390 | 26.242 | 644 | 355 | 28 | 12 | 602 | 49 | 625 | 8.25e-38 | 149 |
| MS.gene04573.t1 | MTR_5g062370 | 26.138 | 593 | 346 | 23 | 5 | 562 | 50 | 585 | 4.27e-36 | 143 |
| MS.gene04573.t1 | MTR_4g094285 | 25.041 | 603 | 354 | 21 | 5 | 572 | 54 | 593 | 2.56e-35 | 142 |
| MS.gene04573.t1 | MTR_1g087240 | 25.116 | 649 | 359 | 28 | 11 | 602 | 43 | 621 | 1.09e-33 | 137 |
| MS.gene04573.t1 | MTR_2g008240 | 26.578 | 602 | 332 | 26 | 12 | 572 | 62 | 594 | 1.15e-32 | 134 |
| MS.gene04573.t1 | MTR_2g034720 | 24.961 | 641 | 377 | 27 | 5 | 600 | 41 | 622 | 3.14e-31 | 129 |
| MS.gene04573.t1 | MTR_5g030860 | 26.418 | 617 | 337 | 29 | 5 | 572 | 42 | 590 | 1.68e-28 | 121 |
| MS.gene04573.t1 | MTR_1g106860 | 24.608 | 638 | 390 | 23 | 5 | 600 | 38 | 626 | 1.28e-26 | 115 |
| MS.gene04573.t1 | MTR_5g069850 | 70.690 | 58 | 17 | 0 | 528 | 585 | 1 | 58 | 1.76e-23 | 94.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04573.t1 | AT3G47000 | 72.788 | 599 | 159 | 3 | 3 | 599 | 8 | 604 | 0.0 | 935 |
| MS.gene04573.t1 | AT3G47040 | 71.285 | 599 | 170 | 2 | 3 | 600 | 8 | 605 | 0.0 | 922 |
| MS.gene04573.t1 | AT3G47040 | 68.429 | 624 | 170 | 3 | 3 | 600 | 8 | 630 | 0.0 | 908 |
| MS.gene04573.t1 | AT3G47050 | 71.405 | 598 | 165 | 4 | 4 | 599 | 9 | 602 | 0.0 | 892 |
| MS.gene04573.t1 | AT3G47010 | 68.624 | 596 | 185 | 2 | 4 | 598 | 10 | 604 | 0.0 | 887 |
| MS.gene04573.t1 | AT3G47010 | 68.456 | 596 | 185 | 3 | 4 | 598 | 10 | 603 | 0.0 | 879 |
| MS.gene04573.t1 | AT3G47040 | 66.297 | 632 | 178 | 5 | 3 | 600 | 8 | 638 | 0.0 | 875 |
| MS.gene04573.t1 | AT3G47000 | 74.887 | 442 | 111 | 0 | 3 | 444 | 8 | 449 | 0.0 | 728 |
| MS.gene04573.t1 | AT5G04885 | 57.886 | 596 | 247 | 4 | 4 | 598 | 46 | 638 | 0.0 | 724 |
| MS.gene04573.t1 | AT5G04885 | 57.886 | 596 | 247 | 4 | 4 | 598 | 29 | 621 | 0.0 | 723 |
| MS.gene04573.t1 | AT5G04885 | 57.886 | 596 | 247 | 4 | 4 | 598 | 29 | 621 | 0.0 | 723 |
| MS.gene04573.t1 | AT3G47040 | 73.303 | 442 | 118 | 0 | 3 | 444 | 8 | 449 | 0.0 | 710 |
| MS.gene04573.t1 | AT3G47010 | 70.748 | 441 | 129 | 0 | 4 | 444 | 10 | 450 | 0.0 | 687 |
| MS.gene04573.t1 | AT5G20950 | 57.286 | 597 | 249 | 5 | 5 | 599 | 104 | 696 | 0.0 | 686 |
| MS.gene04573.t1 | AT5G20950 | 57.286 | 597 | 249 | 5 | 5 | 599 | 26 | 618 | 0.0 | 685 |
| MS.gene04573.t1 | AT5G20950 | 57.286 | 597 | 249 | 5 | 5 | 599 | 26 | 618 | 0.0 | 685 |
| MS.gene04573.t1 | AT3G47000 | 72.028 | 429 | 116 | 3 | 173 | 599 | 1 | 427 | 0.0 | 659 |
| MS.gene04573.t1 | AT5G20940 | 55.462 | 595 | 259 | 4 | 5 | 598 | 32 | 621 | 0.0 | 657 |
| MS.gene04573.t1 | AT3G47010 | 66.745 | 427 | 139 | 3 | 173 | 598 | 1 | 425 | 0.0 | 616 |
| MS.gene04573.t1 | AT3G47050 | 73.118 | 372 | 100 | 0 | 4 | 375 | 9 | 380 | 0.0 | 587 |
| MS.gene04573.t1 | AT3G62710 | 48.248 | 628 | 274 | 15 | 5 | 598 | 38 | 648 | 0.0 | 563 |
| MS.gene04573.t1 | AT5G49360 | 25.079 | 634 | 375 | 24 | 9 | 600 | 53 | 628 | 1.47e-35 | 143 |
| MS.gene04573.t1 | AT3G19620 | 26.202 | 645 | 354 | 29 | 13 | 600 | 49 | 628 | 4.45e-34 | 138 |
| MS.gene04573.t1 | AT1G02640 | 26.547 | 614 | 317 | 27 | 11 | 572 | 50 | 581 | 3.29e-33 | 135 |
| MS.gene04573.t1 | AT5G64570 | 25.957 | 601 | 336 | 25 | 12 | 572 | 66 | 597 | 2.03e-32 | 133 |
| MS.gene04573.t1 | AT5G10560 | 26.580 | 538 | 331 | 21 | 85 | 572 | 78 | 601 | 2.33e-30 | 127 |
| MS.gene04573.t1 | AT5G09730 | 25.203 | 615 | 337 | 25 | 5 | 572 | 49 | 587 | 3.99e-30 | 126 |
| MS.gene04573.t1 | AT1G78060 | 25.714 | 595 | 354 | 24 | 11 | 572 | 44 | 583 | 2.76e-29 | 124 |
| MS.gene04573.t1 | AT5G64570 | 25.246 | 610 | 347 | 25 | 12 | 581 | 66 | 606 | 4.75e-29 | 122 |
| MS.gene04573.t1 | AT5G64570 | 26.840 | 462 | 290 | 21 | 134 | 572 | 3 | 439 | 4.01e-25 | 110 |
Find 147 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTTGTTTCCTCTTGGTTT+TGG | 0.130723 | 3.1:-46931470 | MS.gene04573:CDS |
| AAGATGACTTCCATTGTTTC+TGG | 0.168871 | 3.1:-46933604 | MS.gene04573:CDS |
| CCAGGGAGTTTCAACCATTA+TGG | 0.249679 | 3.1:-46933253 | MS.gene04573:CDS |
| AGCAAAGATCTGTCACTTAA+TGG | 0.265440 | 3.1:+46932674 | None:intergenic |
| GCTGATTTGGTTAGAAGAAT+TGG | 0.279268 | 3.1:-46934078 | MS.gene04573:CDS |
| TGAGAACTCGTTACGTTCTA+TGG | 0.306943 | 3.1:+46931829 | None:intergenic |
| TAGCAACAGTGCGTTCAATT+TGG | 0.313170 | 3.1:+46935466 | None:intergenic |
| TTGACCTCTTTAATTGAATC+AGG | 0.314382 | 3.1:-46932776 | MS.gene04573:CDS |
| TTTCTATAGAGATGCTGATT+TGG | 0.330050 | 3.1:-46934091 | MS.gene04573:intron |
| AGATTTCGGTTAAAAGAAAA+TGG | 0.333795 | 3.1:+46933190 | None:intergenic |
| CTTGGGATACCTCTCATATA+TGG | 0.334109 | 3.1:-46934282 | MS.gene04573:CDS |
| ACGAGCTTCAATGGGTTCAT+TGG | 0.350130 | 3.1:+46935542 | None:intergenic |
| GTCATCAGATTGGGCTGATA+TGG | 0.359012 | 3.1:-46934340 | MS.gene04573:CDS |
| CATGGTAATAACAGTGTCTA+TGG | 0.375656 | 3.1:-46934246 | MS.gene04573:CDS |
| CGAGCTTCAATGGGTTCATT+GGG | 0.388791 | 3.1:+46935543 | None:intergenic |
| GGAATCACAGATGTAATCTT+TGG | 0.389084 | 3.1:-46931584 | MS.gene04573:CDS |
| TTTCCGCACAATGTTGGCCT+TGG | 0.390287 | 3.1:-46934213 | MS.gene04573:CDS |
| CTTGTTGCCGCTTGGTTGCC+AGG | 0.393551 | 3.1:-46931620 | MS.gene04573:CDS |
| GTCCTTGATACGAGCTTCAA+TGG | 0.394933 | 3.1:+46935533 | None:intergenic |
| TGGGAAATGCAGTCTAAATA+AGG | 0.395296 | 3.1:+46933273 | None:intergenic |
| TGTGAACCTTTGTTTCCTCT+TGG | 0.400222 | 3.1:-46931476 | MS.gene04573:CDS |
| ATAGGAAGCATACTAAGTTC+TGG | 0.403935 | 3.1:-46934390 | MS.gene04573:intron |
| GGAACTCATGCTGATAATCT+TGG | 0.404253 | 3.1:-46932397 | MS.gene04573:CDS |
| AGCACCTTATGCCGAGTCAT+TGG | 0.405711 | 3.1:-46931783 | MS.gene04573:CDS |
| GATGACAGTGCATTCTCAAA+TGG | 0.407895 | 3.1:+46934357 | None:intergenic |
| CTCTTAGCATTCTTGTTCAA+TGG | 0.408954 | 3.1:+46932433 | None:intergenic |
| GTCTACCTTCCAGCCACAAA+AGG | 0.425345 | 3.1:+46933541 | None:intergenic |
| TTCTTGTTCAATGGAAGAAA+AGG | 0.426285 | 3.1:+46932442 | None:intergenic |
| TATGGAATTGATGCAGTTCA+TGG | 0.433577 | 3.1:-46934264 | MS.gene04573:CDS |
| TTCACCTGATTCAATTAAAG+AGG | 0.444760 | 3.1:+46932772 | None:intergenic |
| ATGACAGTGCATTCTCAAAT+GGG | 0.446083 | 3.1:+46934358 | None:intergenic |
| GCACCTTATGCCGAGTCATT+GGG | 0.446832 | 3.1:-46931782 | MS.gene04573:CDS |
| TGCAGGTGATGGTGGCTGTC+AGG | 0.448880 | 3.1:-46932820 | MS.gene04573:intron |
| TCCATTGTTTCTGGTTTGCA+AGG | 0.450032 | 3.1:-46933595 | MS.gene04573:CDS |
| TCATTTGACCAATCTTCTCC+TGG | 0.455549 | 3.1:+46935490 | None:intergenic |
| ATCTCCTCTGCCGTCAATGC+TGG | 0.456108 | 3.1:-46932930 | MS.gene04573:CDS |
| AGAATGCACTGTCATCAGAT+TGG | 0.456347 | 3.1:-46934350 | MS.gene04573:CDS |
| GCGTCCTATACTAGCTGGAA+TGG | 0.461450 | 3.1:-46933231 | MS.gene04573:CDS |
| AAACAATGGAAGTCATCTTT+CGG | 0.464872 | 3.1:+46933608 | None:intergenic |
| GATTGGGCTGATATGGTAGA+TGG | 0.465157 | 3.1:-46934333 | MS.gene04573:CDS |
| TAATATCAGTTCCACGGAAA+GGG | 0.465753 | 3.1:+46931738 | None:intergenic |
| GCATCATCGATTCTGCTCAT+TGG | 0.472050 | 3.1:+46932746 | None:intergenic |
| TTGGATTTCAATGTGGAGGT+TGG | 0.482406 | 3.1:-46932378 | MS.gene04573:CDS |
| TCGCCCAATGACTCGGCATA+AGG | 0.485057 | 3.1:+46931779 | None:intergenic |
| ACTATATTTCCGCACAATGT+TGG | 0.491225 | 3.1:-46934219 | MS.gene04573:CDS |
| GATATCAAAATAACCAATGT+TGG | 0.492181 | 3.1:+46931692 | None:intergenic |
| TTATTTAGACTGCATTTCCC+AGG | 0.494864 | 3.1:-46933271 | MS.gene04573:CDS |
| CATGTCAATTCCAGCATTGA+CGG | 0.495441 | 3.1:+46932920 | None:intergenic |
| CCATAATGGTTGAAACTCCC+TGG | 0.496128 | 3.1:+46933253 | None:intergenic |
| TTGTGATTTCCGACTGGGAA+GGG | 0.496339 | 3.1:-46932998 | MS.gene04573:CDS |
| TCTTTCACGCATGACTCTCC+AGG | 0.497082 | 3.1:-46935508 | MS.gene04573:CDS |
| CGTTCTATGGTGTCTTGTGA+TGG | 0.497832 | 3.1:+46931842 | None:intergenic |
| TTGAGAGTAAAGTTTGCTGC+TGG | 0.502814 | 3.1:-46932710 | MS.gene04573:CDS |
| ATGACTCTCCAGGAGAAGAT+TGG | 0.504059 | 3.1:-46935498 | MS.gene04573:CDS |
| ACACTTCTAAACCAAGTGAC+TGG | 0.505394 | 3.1:+46931536 | None:intergenic |
| TCCTTGATACGAGCTTCAAT+GGG | 0.510901 | 3.1:+46935534 | None:intergenic |
| GCTAGTATAGGACGCCATAA+TGG | 0.513858 | 3.1:+46933239 | None:intergenic |
| GCGCCCATTCCAGCTAGTAT+AGG | 0.516093 | 3.1:+46933227 | None:intergenic |
| TGCCGACAAAATTCCAACAT+TGG | 0.520329 | 3.1:-46931705 | MS.gene04573:CDS |
| GCTAGATACAGTTGGTTGCA+AGG | 0.521815 | 3.1:-46932654 | MS.gene04573:intron |
| GGAGTTGACCTTTGAAGTCA+TGG | 0.522741 | 3.1:+46931558 | None:intergenic |
| TTATGGCGTCCTATACTAGC+TGG | 0.523575 | 3.1:-46933236 | MS.gene04573:CDS |
| ATTCCATCTCCTTCACTACC+TGG | 0.526085 | 3.1:+46931602 | None:intergenic |
| ACCCATTGAAGCTCGTATCA+AGG | 0.527158 | 3.1:-46935535 | MS.gene04573:CDS |
| GGAAGCAGTTCGAAAGTCGT+TGG | 0.527661 | 3.1:-46932497 | MS.gene04573:CDS |
| AAGGTCAACTCCCAGTCACT+TGG | 0.528725 | 3.1:-46931547 | MS.gene04573:CDS |
| TCCATCACCAACAAAATGCT+TGG | 0.529596 | 3.1:+46933368 | None:intergenic |
| TTCGGTTAAAAGAAAATGGT+CGG | 0.530265 | 3.1:+46933194 | None:intergenic |
| ACTCATAAGGGTGTGAATGA+AGG | 0.530326 | 3.1:-46933342 | MS.gene04573:CDS |
| ATGTTGGCCTTGGAGCTACT+AGG | 0.530559 | 3.1:-46934203 | MS.gene04573:intron |
| TGGTGATGGAGGTACTCATA+AGG | 0.530719 | 3.1:-46933355 | MS.gene04573:CDS |
| CGTCCTATACTAGCTGGAAT+GGG | 0.531709 | 3.1:-46933230 | MS.gene04573:CDS |
| TAGATGCTCTTGTTGCCGCT+TGG | 0.531832 | 3.1:-46931628 | MS.gene04573:CDS |
| AAGATTATCAGCATGAGTTC+CGG | 0.531909 | 3.1:+46932399 | None:intergenic |
| GAATGCACTGTCATCAGATT+GGG | 0.533604 | 3.1:-46934349 | MS.gene04573:CDS |
| TCATTTGCGATTGTAGCCGT+TGG | 0.534609 | 3.1:-46931809 | MS.gene04573:CDS |
| GAGAGGTCTTTGATGACAGA+AGG | 0.541378 | 3.1:+46935441 | None:intergenic |
| CACTTCTAAACCAAGTGACT+GGG | 0.542067 | 3.1:+46931537 | None:intergenic |
| AGCCGTCGGAGCTGAAACAC+AGG | 0.542683 | 3.1:-46931882 | MS.gene04573:CDS |
| TCAGCTCTAGAGTCTAGACT+TGG | 0.545525 | 3.1:-46934300 | MS.gene04573:CDS |
| CATGCAGCAACTCTATCACT+TGG | 0.546497 | 3.1:+46931497 | None:intergenic |
| AGATCTTTGCTAGATACAGT+TGG | 0.546954 | 3.1:-46932662 | MS.gene04573:CDS |
| TCTACCTTCCAGCCACAAAA+GGG | 0.553155 | 3.1:+46933542 | None:intergenic |
| GTCATCAAAGACCTCTCCAT+TGG | 0.555486 | 3.1:-46935435 | MS.gene04573:intron |
| TTTGTGATTTCCGACTGGGA+AGG | 0.559525 | 3.1:-46932999 | MS.gene04573:CDS |
| GGAGAGTCATGCGTGAAAGA+AGG | 0.559868 | 3.1:+46935511 | None:intergenic |
| ATAATATCAGTTCCACGGAA+AGG | 0.560019 | 3.1:+46931737 | None:intergenic |
| GTGGAGGTTGGACTAAAACT+TGG | 0.560572 | 3.1:-46932366 | MS.gene04573:CDS |
| AAAACTTGGTATGGTGCTAG+TGG | 0.563612 | 3.1:-46932352 | MS.gene04573:CDS |
| GGTGATGGAGGTACTCATAA+GGG | 0.569275 | 3.1:-46933354 | MS.gene04573:CDS |
| TAGAAGAATTGGAGCTGCAA+CGG | 0.571117 | 3.1:-46934067 | MS.gene04573:CDS |
| CTTGGTATGGTGCTAGTGGA+AGG | 0.571442 | 3.1:-46932348 | MS.gene04573:CDS |
| TTTGGTAGCCATGACTTCAA+AGG | 0.572278 | 3.1:-46931566 | MS.gene04573:CDS |
| GACCGACTTTGTAAACCTCA+CGG | 0.574208 | 3.1:-46932972 | MS.gene04573:CDS |
| AACCTGTGTTTCAGCTCCGA+CGG | 0.574303 | 3.1:+46931880 | None:intergenic |
| TACAGGTATGCAAAGATCCT+AGG | 0.574564 | 3.1:-46933675 | MS.gene04573:intron |
| ATTCTTGTATAAGCAATCCA+TGG | 0.574794 | 3.1:+46935566 | None:intergenic |
| CAATGCCTTACCGCGACACA+AGG | 0.575221 | 3.1:+46934003 | None:intergenic |
| AATTCCAGCATTGACGGCAG+AGG | 0.576589 | 3.1:+46932926 | None:intergenic |
| GCGCTTGAAGTTAAAGCAAG+TGG | 0.579980 | 3.1:-46934045 | MS.gene04573:CDS |
| ACCCGTGAGGTTTACAAAGT+CGG | 0.583206 | 3.1:+46932970 | None:intergenic |
| ACCGACTTTGTAAACCTCAC+GGG | 0.588431 | 3.1:-46932971 | MS.gene04573:CDS |
| TGAATTGTCGCCCAATGACT+CGG | 0.588536 | 3.1:+46931772 | None:intergenic |
| TATTTAGACTGCATTTCCCA+GGG | 0.588891 | 3.1:-46933270 | MS.gene04573:CDS |
| ACCTTGCAAACCAGAAACAA+TGG | 0.595678 | 3.1:+46933594 | None:intergenic |
| CATAATGGTTGAAACTCCCT+GGG | 0.597849 | 3.1:+46933254 | None:intergenic |
| AGAGGTCTTTGATGACAGAA+GGG | 0.598226 | 3.1:+46935442 | None:intergenic |
| AGCTTATAATATCAGTTCCA+CGG | 0.600401 | 3.1:+46931732 | None:intergenic |
| AATATTTATGCAGGTGATGG+TGG | 0.601819 | 3.1:-46932828 | MS.gene04573:intron |
| GAGCTCACAATCCCTTTCCG+TGG | 0.602469 | 3.1:-46931749 | MS.gene04573:CDS |
| CCGCCACAAGGACATAAACA+TGG | 0.603763 | 3.1:-46933568 | MS.gene04573:CDS |
| GCTTGGTTGCCAGGTAGTGA+AGG | 0.604762 | 3.1:-46931611 | MS.gene04573:CDS |
| GGTTGGACTAAAACTTGGTA+TGG | 0.605118 | 3.1:-46932361 | MS.gene04573:CDS |
| TTGCAAGGTCAGCCGCCACA+AGG | 0.613955 | 3.1:-46933580 | MS.gene04573:CDS |
| AGCCGTGGCTCTAAAACTAA+CGG | 0.616971 | 3.1:+46931662 | None:intergenic |
| TAACTTTGCTCCTTGTGTCG+CGG | 0.620843 | 3.1:-46934013 | MS.gene04573:intron |
| GGTATGCAAAGATCCTAGGT+GGG | 0.622672 | 3.1:-46933671 | MS.gene04573:CDS |
| AATCTTGGATTTCAATGTGG+AGG | 0.629362 | 3.1:-46932382 | MS.gene04573:CDS |
| TATCCATGTTTATGTCCTTG+TGG | 0.630539 | 3.1:+46933565 | None:intergenic |
| TTGCCAGGTAGTGAAGGAGA+TGG | 0.631782 | 3.1:-46931605 | MS.gene04573:CDS |
| GCTAGTGGAAGGATCACAGT+TGG | 0.632128 | 3.1:-46932337 | MS.gene04573:intron |
| TCGGTCGAGCCCTTCCCAGT+CGG | 0.632697 | 3.1:+46932989 | None:intergenic |
| GCTCCAAGGCCAACATTGTG+CGG | 0.636775 | 3.1:+46934210 | None:intergenic |
| GGCATAAGGTGCTTCACCAA+CGG | 0.637289 | 3.1:+46931793 | None:intergenic |
| TCATAGCATCTTCCCCACCT+AGG | 0.637527 | 3.1:+46933658 | None:intergenic |
| AGGTATGCAAAGATCCTAGG+TGG | 0.641153 | 3.1:-46933672 | MS.gene04573:CDS |
| CAGCTCTAGAGTCTAGACTT+GGG | 0.642393 | 3.1:-46934299 | MS.gene04573:CDS |
| GCCACATAGAGATCTTGCAC+GGG | 0.645982 | 3.1:-46932518 | MS.gene04573:CDS |
| ATACTAACCTAGTAGCTCCA+AGG | 0.653710 | 3.1:+46934196 | None:intergenic |
| GATGCTGTTAAAGCAGCCGT+CGG | 0.654191 | 3.1:-46931896 | MS.gene04573:CDS |
| CCAAAACCAAGAGGAAACAA+AGG | 0.658771 | 3.1:+46931470 | None:intergenic |
| TCCCGTGCAAGATCTCTATG+TGG | 0.660763 | 3.1:+46932517 | None:intergenic |
| GTATGCAAAGATCCTAGGTG+GGG | 0.661100 | 3.1:-46933670 | MS.gene04573:CDS |
| AGCCACATAGAGATCTTGCA+CGG | 0.661216 | 3.1:-46932519 | MS.gene04573:CDS |
| GGAAGCATACTAAGTTCTGG+AGG | 0.661489 | 3.1:-46934387 | MS.gene04573:CDS |
| GATAATCTTGGATTTCAATG+TGG | 0.662758 | 3.1:-46932385 | MS.gene04573:CDS |
| CGTCAATGCTGGAATTGACA+TGG | 0.663099 | 3.1:-46932919 | MS.gene04573:intron |
| GCATCAATTCCATATATGAG+AGG | 0.665889 | 3.1:+46934273 | None:intergenic |
| CCATGTTTATGTCCTTGTGG+CGG | 0.671755 | 3.1:+46933568 | None:intergenic |
| TGGGGTTACTACCAATGGAG+AGG | 0.672659 | 3.1:+46935424 | None:intergenic |
| GAGGTCTTTGATGACAGAAG+GGG | 0.677985 | 3.1:+46935443 | None:intergenic |
| TAGTTTAGCCCAAAACCAAG+AGG | 0.678047 | 3.1:+46931461 | None:intergenic |
| TCTATCTTTACCAAAAGCCG+TGG | 0.689522 | 3.1:+46931647 | None:intergenic |
| TGACAGTGCATTCTCAAATG+GGG | 0.696438 | 3.1:+46934359 | None:intergenic |
| AGACTTAGAGAGAATACACA+TGG | 0.711757 | 3.1:-46933298 | MS.gene04573:CDS |
| TTCACTACCTGGCAACCAAG+CGG | 0.717614 | 3.1:+46931613 | None:intergenic |
| TATCGATAATCTGACCCGTG+AGG | 0.757801 | 3.1:+46932957 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAATTTTCATATACTTTA+GGG | - | chr3.1:46932479-46932498 | MS.gene04573:CDS | 10.0% |
| !!! | TTATAATTTTCATATACTTT+AGG | - | chr3.1:46932478-46932497 | MS.gene04573:CDS | 10.0% |
| !! | ACATATGTTTATTTATTGTA+AGG | - | chr3.1:46934807-46934826 | MS.gene04573:intron | 15.0% |
| !! | ATAACGTATTTATGTAAAAA+TGG | + | chr3.1:46932280-46932299 | None:intergenic | 15.0% |
| !! | ATTTATTTGGTTAAATATAC+AGG | - | chr3.1:46933320-46933339 | MS.gene04573:CDS | 15.0% |
| !! | GAGTAAATTCATATAATTTA+AGG | - | chr3.1:46932449-46932468 | MS.gene04573:CDS | 15.0% |
| !! | TAAAAGATATCAATTGTTAT+CGG | + | chr3.1:46933568-46933587 | None:intergenic | 15.0% |
| !!! | AAACTATAATTTGTAGTTTT+TGG | - | chr3.1:46932215-46932234 | MS.gene04573:intron | 15.0% |
| !!! | ATTTTTAAACTGAAATCTTT+TGG | + | chr3.1:46933521-46933540 | None:intergenic | 15.0% |
| !! | AAAAAGATTGACTAAAATGA+TGG | + | chr3.1:46931685-46931704 | None:intergenic | 20.0% |
| !! | AGCTAATATTGCAAAAAATT+TGG | + | chr3.1:46933945-46933964 | None:intergenic | 20.0% |
| !! | ATAAAGGAAAGTGATTTATT+TGG | - | chr3.1:46933307-46933326 | MS.gene04573:CDS | 20.0% |
| !! | ATCGTGTTTAGATTATTTAA+AGG | - | chr3.1:46932175-46932194 | MS.gene04573:intron | 20.0% |
| !! | CTATTCAATAATATTTATGC+AGG | - | chr3.1:46934175-46934194 | MS.gene04573:intron | 20.0% |
| !! | CTGCATAAATATTATTGAAT+AGG | + | chr3.1:46934177-46934196 | None:intergenic | 20.0% |
| !! | TGAATTACAACTTAAACATA+AGG | + | chr3.1:46933603-46933622 | None:intergenic | 20.0% |
| !!! | CTTGTCTAATATGATTTTAA+TGG | - | chr3.1:46934780-46934799 | MS.gene04573:intron | 20.0% |
| !!! | TAGTTTTTCTTTCAAGATTT+CGG | + | chr3.1:46933839-46933858 | None:intergenic | 20.0% |
| !!! | TATGTTTAAGTTGTAATTCA+GGG | - | chr3.1:46933603-46933622 | MS.gene04573:CDS | 20.0% |
| !!! | TATTTTTTTTGTGTTGCTTT+AGG | - | chr3.1:46932562-46932581 | MS.gene04573:intron | 20.0% |
| !!! | TGATTATATCTGCATTTTAT+AGG | - | chr3.1:46932604-46932623 | MS.gene04573:intron | 20.0% |
| !!! | TTATGTTTAAGTTGTAATTC+AGG | - | chr3.1:46933602-46933621 | MS.gene04573:CDS | 20.0% |
| !!! | TTCAATTTTTTAACACGTTA+TGG | + | chr3.1:46934441-46934460 | None:intergenic | 20.0% |
| !!! | TTTATTGTATCTTTTGGTAT+AGG | - | chr3.1:46932018-46932037 | MS.gene04573:intron | 20.0% |
| !!! | TTTGACTTTATTGTATCTTT+TGG | - | chr3.1:46932012-46932031 | MS.gene04573:intron | 20.0% |
| ! | AATAATATTTATGCAGGTGA+TGG | - | chr3.1:46934181-46934200 | MS.gene04573:intron | 25.0% |
| ! | ACACTATGATGAAAGATAAT+TGG | + | chr3.1:46934134-46934153 | None:intergenic | 25.0% |
| ! | AGATTTCGGTTAAAAGAAAA+TGG | + | chr3.1:46933825-46933844 | None:intergenic | 25.0% |
| ! | ATCTCATTAGATTTGCATAA+CGG | + | chr3.1:46932851-46932870 | None:intergenic | 25.0% |
| ! | GAAATCTTGAAAGAAAAACT+AGG | - | chr3.1:46933838-46933857 | MS.gene04573:intron | 25.0% |
| ! | GATATCAAAATAACCAATGT+TGG | + | chr3.1:46935323-46935342 | None:intergenic | 25.0% |
| ! | TAAACTACATGAATAAGTGA+TGG | - | chr3.1:46935567-46935586 | MS.gene04573:CDS | 25.0% |
| ! | TCTGAACAATAGTTAAAACA+AGG | - | chr3.1:46933222-46933241 | MS.gene04573:CDS | 25.0% |
| ! | TGGATTTAACAATAAATCGA+AGG | + | chr3.1:46932260-46932279 | None:intergenic | 25.0% |
| ! | TTGGTAAGCTATGATATTTA+TGG | - | chr3.1:46934694-46934713 | MS.gene04573:intron | 25.0% |
| ! | TTTCTGTATCTAGACAATAA+AGG | - | chr3.1:46933291-46933310 | MS.gene04573:CDS | 25.0% |
| !! | AAGCTACATTTTATCACTTT+CGG | + | chr3.1:46934866-46934885 | None:intergenic | 25.0% |
| !! | ATGATAATGCTGCTATAATT+TGG | - | chr3.1:46932869-46932888 | MS.gene04573:intron | 25.0% |
| !! | GAAAGAAAAACTAGGTTTTA+AGG | - | chr3.1:46933846-46933865 | MS.gene04573:intron | 25.0% |
| !! | TTCTAAGTAAAACTCTGAAA+TGG | + | chr3.1:46931611-46931630 | None:intergenic | 25.0% |
| !!! | ACATTGGTTATTTTGATATC+TGG | - | chr3.1:46935323-46935342 | MS.gene04573:intron | 25.0% |
| !!! | CTGCAAAAGAAGTATTAATA+TGG | + | chr3.1:46934475-46934494 | None:intergenic | 25.0% |
| !!! | TCTAAGTAAAACTCTGAAAT+GGG | + | chr3.1:46931610-46931629 | None:intergenic | 25.0% |
| AAACAATGGAAGTCATCTTT+CGG | + | chr3.1:46933407-46933426 | None:intergenic | 30.0% | |
| AAGGATTATCCCAGTATTAT+GGG | + | chr3.1:46933159-46933178 | None:intergenic | 30.0% | |
| AATGACTGATTAACTATCAC+TGG | - | chr3.1:46933872-46933891 | MS.gene04573:intron | 30.0% | |
| AGCTTATAATATCAGTTCCA+CGG | + | chr3.1:46935283-46935302 | None:intergenic | 30.0% | |
| ATAATACTGGGATAATCCTT+CGG | - | chr3.1:46933159-46933178 | MS.gene04573:intron | 30.0% | |
| CAAGATTGTTGAACCTAAAA+TGG | + | chr3.1:46935096-46935115 | None:intergenic | 30.0% | |
| GATAATCTTGGATTTCAATG+TGG | - | chr3.1:46934627-46934646 | MS.gene04573:intron | 30.0% | |
| GTAAGGTATACAAGTTAATG+TGG | + | chr3.1:46935074-46935093 | None:intergenic | 30.0% | |
| TACATACCAAAACACGTTTA+TGG | - | chr3.1:46934968-46934987 | MS.gene04573:intron | 30.0% | |
| TTCACCTGATTCAATTAAAG+AGG | + | chr3.1:46934243-46934262 | None:intergenic | 30.0% | |
| TTCGGTTAAAAGAAAATGGT+CGG | + | chr3.1:46933821-46933840 | None:intergenic | 30.0% | |
| TTCTTGTTCAATGGAAGAAA+AGG | + | chr3.1:46934573-46934592 | None:intergenic | 30.0% | |
| TTGACCTCTTTAATTGAATC+AGG | - | chr3.1:46934236-46934255 | MS.gene04573:CDS | 30.0% | |
| TTGTTGAACCTAAAATGGTA+AGG | + | chr3.1:46935091-46935110 | None:intergenic | 30.0% | |
| ! | AACCAATGTTGGAATTTTGT+CGG | + | chr3.1:46935312-46935331 | None:intergenic | 30.0% |
| ! | AAGATTGATTTCAGTGTGTT+TGG | - | chr3.1:46934725-46934744 | MS.gene04573:intron | 30.0% |
| ! | AGCTTTTATGCTTTTGTGTT+TGG | - | chr3.1:46934881-46934900 | MS.gene04573:intron | 30.0% |
| ! | ATTTAGCCATAAACGTGTTT+TGG | + | chr3.1:46934977-46934996 | None:intergenic | 30.0% |
| ! | CTTGTATACCTTACCATTTT+AGG | - | chr3.1:46935080-46935099 | MS.gene04573:intron | 30.0% |
| ! | GCTAAGAGAATTTTTGTTAC+CGG | - | chr3.1:46934594-46934613 | MS.gene04573:intron | 30.0% |
| ! | TAAGTATTGTTCGGTTTGTT+TGG | - | chr3.1:46931783-46931802 | MS.gene04573:CDS | 30.0% |
| ! | TAGATTTTGTTCAGAAACCT+TGG | - | chr3.1:46934835-46934854 | MS.gene04573:intron | 30.0% |
| ! | TTGAGTGTGTAAGTATTGTT+CGG | - | chr3.1:46931774-46931793 | MS.gene04573:CDS | 30.0% |
| ! | TTTCTATAGAGATGCTGATT+TGG | - | chr3.1:46932921-46932940 | MS.gene04573:CDS | 30.0% |
| ! | TTTTTCTCCGTTGTTAAACT+TGG | - | chr3.1:46935037-46935056 | MS.gene04573:intron | 30.0% |
| !! | AACTCACTTTTATCCAGAAT+CGG | - | chr3.1:46932328-46932347 | MS.gene04573:intron | 30.0% |
| !! | AACTTCTTTTTAGTGTATGC+TGG | - | chr3.1:46932099-46932118 | MS.gene04573:intron | 30.0% |
| !! | ACTTCTTTTTAGTGTATGCT+GGG | - | chr3.1:46932100-46932119 | MS.gene04573:intron | 30.0% |
| !! | CTAAGTAAAACTCTGAAATG+GGG | + | chr3.1:46931609-46931628 | None:intergenic | 30.0% |
| !! | TGATTTTGTAAAACCGATTC+TGG | + | chr3.1:46932344-46932363 | None:intergenic | 30.0% |
| !!! | AACGTGTTTTGGTATGTAAA+AGG | + | chr3.1:46934966-46934985 | None:intergenic | 30.0% |
| !!! | CATTTTAGGTTCAACAATCT+TGG | - | chr3.1:46935094-46935113 | MS.gene04573:intron | 30.0% |
| !!! | GCTGCTTTTACAATATTGTA+GGG | - | chr3.1:46933089-46933108 | MS.gene04573:intron | 30.0% |
| !!! | TCGTTGGTTTTGTTGAAAAA+TGG | - | chr3.1:46934531-46934550 | MS.gene04573:intron | 30.0% |
| !!! | TGCTGCTTTTACAATATTGT+AGG | - | chr3.1:46933088-46933107 | MS.gene04573:intron | 30.0% |
| !!! | TTTTTTGTGTTGCTTTAGGT+TGG | - | chr3.1:46932566-46932585 | MS.gene04573:intron | 30.0% |
| AAGATGACTTCCATTGTTTC+TGG | - | chr3.1:46933408-46933427 | MS.gene04573:intron | 35.0% | |
| AAGATTATCAGCATGAGTTC+CGG | + | chr3.1:46934616-46934635 | None:intergenic | 35.0% | |
| AAGCATTTATGAGACACCTT+AGG | - | chr3.1:46931944-46931963 | MS.gene04573:intron | 35.0% | |
| AATACAGAATAGTGTGAAGC+AGG | + | chr3.1:46935017-46935036 | None:intergenic | 35.0% | |
| AATCTTGGATTTCAATGTGG+AGG | - | chr3.1:46934630-46934649 | MS.gene04573:intron | 35.0% | |
| ACGACAACCAAGTTTAACAA+CGG | + | chr3.1:46935047-46935066 | None:intergenic | 35.0% | |
| ACTATATTTCCGCACAATGT+TGG | - | chr3.1:46932793-46932812 | MS.gene04573:CDS | 35.0% | |
| AGACTGTTTAGAAGAGCTTA+TGG | - | chr3.1:46931851-46931870 | MS.gene04573:CDS | 35.0% | |
| AGACTTAGAGAGAATACACA+TGG | - | chr3.1:46933714-46933733 | MS.gene04573:intron | 35.0% | |
| AGATCTTTGCTAGATACAGT+TGG | - | chr3.1:46934350-46934369 | MS.gene04573:CDS | 35.0% | |
| ATAATATCAGTTCCACGGAA+AGG | + | chr3.1:46935278-46935297 | None:intergenic | 35.0% | |
| ATCACTTTATCCTGTACTAG+TGG | - | chr3.1:46932427-46932446 | MS.gene04573:CDS | 35.0% | |
| ATGACAGTGCATTCTCAAAT+GGG | + | chr3.1:46932657-46932676 | None:intergenic | 35.0% | |
| ATTATCCCAGTATTATGGGT+AGG | + | chr3.1:46933155-46933174 | None:intergenic | 35.0% | |
| CAATAGTTAAAACAAGGACG+TGG | - | chr3.1:46933228-46933247 | MS.gene04573:CDS | 35.0% | |
| CACATGCAAGCAATTAATCA+GGG | + | chr3.1:46934418-46934437 | None:intergenic | 35.0% | |
| CATCCAAGAAAGTCAAAAAC+TGG | + | chr3.1:46932896-46932915 | None:intergenic | 35.0% | |
| CATGGTAATAACAGTGTCTA+TGG | - | chr3.1:46932766-46932785 | MS.gene04573:CDS | 35.0% | |
| CTCTTAGCATTCTTGTTCAA+TGG | + | chr3.1:46934582-46934601 | None:intergenic | 35.0% | |
| GAAGGATTATCCCAGTATTA+TGG | + | chr3.1:46933160-46933179 | None:intergenic | 35.0% | |
| GCATCAATTCCATATATGAG+AGG | + | chr3.1:46932742-46932761 | None:intergenic | 35.0% | |
| GGATAAAGTGATACTTGTGA+AGG | + | chr3.1:46932419-46932438 | None:intergenic | 35.0% | |
| TAATACTGGGATAATCCTTC+GGG | - | chr3.1:46933160-46933179 | MS.gene04573:intron | 35.0% | |
| TAATATCAGTTCCACGGAAA+GGG | + | chr3.1:46935277-46935296 | None:intergenic | 35.0% | |
| TATCCATGTTTATGTCCTTG+TGG | + | chr3.1:46933450-46933469 | None:intergenic | 35.0% | |
| TATGGAATTGATGCAGTTCA+TGG | - | chr3.1:46932748-46932767 | MS.gene04573:CDS | 35.0% | |
| TATTGACAATTGCTGCTGTA+GGG | - | chr3.1:46933989-46934008 | MS.gene04573:intron | 35.0% | |
| TATTTAGACTGCATTTCCCA+GGG | - | chr3.1:46933742-46933761 | MS.gene04573:intron | 35.0% | |
| TGAATTTACTCCACTAGTAC+AGG | + | chr3.1:46932440-46932459 | None:intergenic | 35.0% | |
| TGATACTTGTGAAGGTTACT+AGG | + | chr3.1:46932411-46932430 | None:intergenic | 35.0% | |
| TGGGAAATGCAGTCTAAATA+AGG | + | chr3.1:46933742-46933761 | None:intergenic | 35.0% | |
| TTATCCCAGTATTATGGGTA+GGG | + | chr3.1:46933154-46933173 | None:intergenic | 35.0% | |
| TTATTGACAATTGCTGCTGT+AGG | - | chr3.1:46933988-46934007 | MS.gene04573:intron | 35.0% | |
| TTATTTAGACTGCATTTCCC+AGG | - | chr3.1:46933741-46933760 | MS.gene04573:intron | 35.0% | |
| ! | AATATTTATGCAGGTGATGG+TGG | - | chr3.1:46934184-46934203 | MS.gene04573:intron | 35.0% |
| ! | AGCAAAGATCTGTCACTTAA+TGG | + | chr3.1:46934341-46934360 | None:intergenic | 35.0% |
| ! | ATAGGAAGCATACTAAGTTC+TGG | - | chr3.1:46932622-46932641 | MS.gene04573:intron | 35.0% |
| ! | ATGGTCAGAATTGATTCTAG+AGG | - | chr3.1:46932136-46932155 | MS.gene04573:intron | 35.0% |
| ! | TAAACATGGATACCCTTTTG+TGG | - | chr3.1:46933458-46933477 | MS.gene04573:intron | 35.0% |
| ! | TACTTTAGGGACTAAGTAGA+AGG | - | chr3.1:46932492-46932511 | MS.gene04573:CDS | 35.0% |
| !! | CTTTGTTTCCTCTTGGTTTT+GGG | - | chr3.1:46935543-46935562 | MS.gene04573:CDS | 35.0% |
| !! | GCTGATTTGGTTAGAAGAAT+TGG | - | chr3.1:46932934-46932953 | MS.gene04573:CDS | 35.0% |
| !! | GTTAGGGCATTTTCATGAAT+TGG | - | chr3.1:46931879-46931898 | MS.gene04573:CDS | 35.0% |
| !!! | CAGTTTTTGACTTTCTTGGA+TGG | - | chr3.1:46932894-46932913 | MS.gene04573:intron | 35.0% |
| AAGAGCTTATGGAACACGTT+AGG | - | chr3.1:46931862-46931881 | MS.gene04573:CDS | 40.0% | |
| AAGGTTACTAGGTGTGTGTT+TGG | + | chr3.1:46932400-46932419 | None:intergenic | 40.0% | |
| AATACTGGGATAATCCTTCG+GGG | - | chr3.1:46933161-46933180 | MS.gene04573:intron | 40.0% | |
| ACACTTCTAAACCAAGTGAC+TGG | + | chr3.1:46935479-46935498 | None:intergenic | 40.0% | |
| ACCTTGCAAACCAGAAACAA+TGG | + | chr3.1:46933421-46933440 | None:intergenic | 40.0% | |
| ACGCAGAAAGAGTTCTATGT+AGG | + | chr3.1:46933131-46933150 | None:intergenic | 40.0% | |
| AGAATGCACTGTCATCAGAT+TGG | - | chr3.1:46932662-46932681 | MS.gene04573:CDS | 40.0% | |
| AGAGCTTATGGAACACGTTA+GGG | - | chr3.1:46931863-46931882 | MS.gene04573:CDS | 40.0% | |
| ATACTAACCTAGTAGCTCCA+AGG | + | chr3.1:46932819-46932838 | None:intergenic | 40.0% | |
| CAACTCATGAACATGTCCTA+AGG | + | chr3.1:46931963-46931982 | None:intergenic | 40.0% | |
| CACTTCTAAACCAAGTGACT+GGG | + | chr3.1:46935478-46935497 | None:intergenic | 40.0% | |
| CAGAAAGAGTTCTATGTAGG+AGG | + | chr3.1:46933128-46933147 | None:intergenic | 40.0% | |
| CATAATGGTTGAAACTCCCT+GGG | + | chr3.1:46933761-46933780 | None:intergenic | 40.0% | |
| CCAAAACCAAGAGGAAACAA+AGG | + | chr3.1:46935545-46935564 | None:intergenic | 40.0% | |
| CTTGGGATACCTCTCATATA+TGG | - | chr3.1:46932730-46932749 | MS.gene04573:CDS | 40.0% | |
| GAATGCACTGTCATCAGATT+GGG | - | chr3.1:46932663-46932682 | MS.gene04573:CDS | 40.0% | |
| GATGACAGTGCATTCTCAAA+TGG | + | chr3.1:46932658-46932677 | None:intergenic | 40.0% | |
| GCACATGCAAGCAATTAATC+AGG | + | chr3.1:46934419-46934438 | None:intergenic | 40.0% | |
| GGAACTCATGCTGATAATCT+TGG | - | chr3.1:46934615-46934634 | MS.gene04573:intron | 40.0% | |
| GGTTGGACTAAAACTTGGTA+TGG | - | chr3.1:46934651-46934670 | MS.gene04573:intron | 40.0% | |
| TACAGGTATGCAAAGATCCT+AGG | - | chr3.1:46933337-46933356 | MS.gene04573:CDS | 40.0% | |
| TAGAAGAATTGGAGCTGCAA+CGG | - | chr3.1:46932945-46932964 | MS.gene04573:CDS | 40.0% | |
| TAGCAACAGTGCGTTCAATT+TGG | + | chr3.1:46931549-46931568 | None:intergenic | 40.0% | |
| TAGTTTAGCCCAAAACCAAG+AGG | + | chr3.1:46935554-46935573 | None:intergenic | 40.0% | |
| TATCACTTTCGGTCAAACCA+AGG | + | chr3.1:46934855-46934874 | None:intergenic | 40.0% | |
| TCATTTGACCAATCTTCTCC+TGG | + | chr3.1:46931525-46931544 | None:intergenic | 40.0% | |
| TCCATCACCAACAAAATGCT+TGG | + | chr3.1:46933647-46933666 | None:intergenic | 40.0% | |
| TCCTTGATACGAGCTTCAAT+GGG | + | chr3.1:46931481-46931500 | None:intergenic | 40.0% | |
| TCTATCTTTACCAAAAGCCG+TGG | + | chr3.1:46935368-46935387 | None:intergenic | 40.0% | |
| TGAAATGGGGTTACTACCAA+TGG | + | chr3.1:46931596-46931615 | None:intergenic | 40.0% | |
| TGACAGTGCATTCTCAAATG+GGG | + | chr3.1:46932656-46932675 | None:intergenic | 40.0% | |
| TGAGAACTCGTTACGTTCTA+TGG | + | chr3.1:46935186-46935205 | None:intergenic | 40.0% | |
| TGCCGACAAAATTCCAACAT+TGG | - | chr3.1:46935307-46935326 | MS.gene04573:intron | 40.0% | |
| TTGGATTTCAATGTGGAGGT+TGG | - | chr3.1:46934634-46934653 | MS.gene04573:intron | 40.0% | |
| ! | AAAACTTGGTATGGTGCTAG+TGG | - | chr3.1:46934660-46934679 | MS.gene04573:intron | 40.0% |
| ! | ACTCATAAGGGTGTGAATGA+AGG | - | chr3.1:46933670-46933689 | MS.gene04573:CDS | 40.0% |
| ! | AGAGGTCTTTGATGACAGAA+GGG | + | chr3.1:46931573-46931592 | None:intergenic | 40.0% |
| ! | CATGTCAATTCCAGCATTGA+CGG | + | chr3.1:46934095-46934114 | None:intergenic | 40.0% |
| ! | GCTGGGTTTCAATTTTCGAA+TGG | - | chr3.1:46932117-46932136 | MS.gene04573:intron | 40.0% |
| ! | TGTGAACCTTTGTTTCCTCT+TGG | - | chr3.1:46935536-46935555 | MS.gene04573:CDS | 40.0% |
| !! | CCTTTGTTTCCTCTTGGTTT+TGG | - | chr3.1:46935542-46935561 | MS.gene04573:CDS | 40.0% |
| !! | TCCATTGTTTCTGGTTTGCA+AGG | - | chr3.1:46933417-46933436 | MS.gene04573:intron | 40.0% |
| !! | TTGAGAGTAAAGTTTGCTGC+TGG | - | chr3.1:46934302-46934321 | MS.gene04573:CDS | 40.0% |
| !!! | AAGCATTTTGTTGGTGATGG+AGG | - | chr3.1:46933646-46933665 | MS.gene04573:CDS | 40.0% |
| !!! | GGACCAGTTTTTGACTTTCT+TGG | - | chr3.1:46932890-46932909 | MS.gene04573:intron | 40.0% |
| ACCCATTGAAGCTCGTATCA+AGG | - | chr3.1:46931477-46931496 | MS.gene04573:CDS | 45.0% | |
| ACCCGTGAGGTTTACAAAGT+CGG | + | chr3.1:46934045-46934064 | None:intergenic | 45.0% | |
| AGCCACATAGAGATCTTGCA+CGG | - | chr3.1:46934493-46934512 | MS.gene04573:intron | 45.0% | |
| AGGTATGCAAAGATCCTAGG+TGG | - | chr3.1:46933340-46933359 | MS.gene04573:CDS | 45.0% | |
| ATGACTCTCCAGGAGAAGAT+TGG | - | chr3.1:46931514-46931533 | MS.gene04573:CDS | 45.0% | |
| ATTCCATCTCCTTCACTACC+TGG | + | chr3.1:46935413-46935432 | None:intergenic | 45.0% | |
| CATGCAGCAACTCTATCACT+TGG | + | chr3.1:46935518-46935537 | None:intergenic | 45.0% | |
| CCAGGGAGTTTCAACCATTA+TGG | - | chr3.1:46933759-46933778 | MS.gene04573:intron | 45.0% | |
| CCATAATGGTTGAAACTCCC+TGG | + | chr3.1:46933762-46933781 | None:intergenic | 45.0% | |
| CCATGTTTATGTCCTTGTGG+CGG | + | chr3.1:46933447-46933466 | None:intergenic | 45.0% | |
| CGTCAATGCTGGAATTGACA+TGG | - | chr3.1:46934093-46934112 | MS.gene04573:intron | 45.0% | |
| CGTCCTATACTAGCTGGAAT+GGG | - | chr3.1:46933782-46933801 | MS.gene04573:intron | 45.0% | |
| CGTTCTATGGTGTCTTGTGA+TGG | + | chr3.1:46935173-46935192 | None:intergenic | 45.0% | |
| GATTGGGCTGATATGGTAGA+TGG | - | chr3.1:46932679-46932698 | MS.gene04573:CDS | 45.0% | |
| GCGCTTGAAGTTAAAGCAAG+TGG | - | chr3.1:46932967-46932986 | MS.gene04573:CDS | 45.0% | |
| GCTAGATACAGTTGGTTGCA+AGG | - | chr3.1:46934358-46934377 | MS.gene04573:CDS | 45.0% | |
| GCTAGTATAGGACGCCATAA+TGG | + | chr3.1:46933776-46933795 | None:intergenic | 45.0% | |
| GGTATGCAAAGATCCTAGGT+GGG | - | chr3.1:46933341-46933360 | MS.gene04573:CDS | 45.0% | |
| GTATGCAAAGATCCTAGGTG+GGG | - | chr3.1:46933342-46933361 | MS.gene04573:CDS | 45.0% | |
| GTCATCAAAGACCTCTCCAT+TGG | - | chr3.1:46931577-46931596 | MS.gene04573:CDS | 45.0% | |
| GTCATCAGATTGGGCTGATA+TGG | - | chr3.1:46932672-46932691 | MS.gene04573:CDS | 45.0% | |
| GTCCTTGATACGAGCTTCAA+TGG | + | chr3.1:46931482-46931501 | None:intergenic | 45.0% | |
| GTGGAGGTTGGACTAAAACT+TGG | - | chr3.1:46934646-46934665 | MS.gene04573:intron | 45.0% | |
| TAACTTTGCTCCTTGTGTCG+CGG | - | chr3.1:46932999-46933018 | MS.gene04573:CDS | 45.0% | |
| TATCGATAATCTGACCCGTG+AGG | + | chr3.1:46934058-46934077 | None:intergenic | 45.0% | |
| TCATTTGCGATTGTAGCCGT+TGG | - | chr3.1:46935203-46935222 | MS.gene04573:intron | 45.0% | |
| TCTACCTTCCAGCCACAAAA+GGG | + | chr3.1:46933473-46933492 | None:intergenic | 45.0% | |
| TGAATTGTCGCCCAATGACT+CGG | + | chr3.1:46935243-46935262 | None:intergenic | 45.0% | |
| TTATGGCGTCCTATACTAGC+TGG | - | chr3.1:46933776-46933795 | MS.gene04573:intron | 45.0% | |
| TTGTGATTTCCGACTGGGAA+GGG | - | chr3.1:46934014-46934033 | MS.gene04573:CDS | 45.0% | |
| TTTGTGATTTCCGACTGGGA+AGG | - | chr3.1:46934013-46934032 | MS.gene04573:intron | 45.0% | |
| ! | ACCGACTTTGTAAACCTCAC+GGG | - | chr3.1:46934041-46934060 | MS.gene04573:CDS | 45.0% |
| ! | ACGAGCTTCAATGGGTTCAT+TGG | + | chr3.1:46931473-46931492 | None:intergenic | 45.0% |
| ! | CGAGCTTCAATGGGTTCATT+GGG | + | chr3.1:46931472-46931491 | None:intergenic | 45.0% |
| ! | GACCGACTTTGTAAACCTCA+CGG | - | chr3.1:46934040-46934059 | MS.gene04573:CDS | 45.0% |
| ! | GAGAGGTCTTTGATGACAGA+AGG | + | chr3.1:46931574-46931593 | None:intergenic | 45.0% |
| ! | GAGGTCTTTGATGACAGAAG+GGG | + | chr3.1:46931572-46931591 | None:intergenic | 45.0% |
| ! | GCATGTGCCAAGCATTTTGT+TGG | - | chr3.1:46933637-46933656 | MS.gene04573:CDS | 45.0% |
| ! | GGAAGCATACTAAGTTCTGG+AGG | - | chr3.1:46932625-46932644 | MS.gene04573:intron | 45.0% |
| !! | AGCCGTGGCTCTAAAACTAA+CGG | + | chr3.1:46935353-46935372 | None:intergenic | 45.0% |
| !! | AGGGTTTTGTGATTTCCGAC+TGG | - | chr3.1:46934008-46934027 | MS.gene04573:intron | 45.0% |
| !! | CAGCTCTAGAGTCTAGACTT+GGG | - | chr3.1:46932713-46932732 | MS.gene04573:CDS | 45.0% |
| !! | GCATCATCGATTCTGCTCAT+TGG | + | chr3.1:46934269-46934288 | None:intergenic | 45.0% |
| !! | GCCAAGCATTTTGTTGGTGA+TGG | - | chr3.1:46933643-46933662 | MS.gene04573:CDS | 45.0% |
| !! | GGAGTTGACCTTTGAAGTCA+TGG | + | chr3.1:46935457-46935476 | None:intergenic | 45.0% |
| !! | GGGTTTTGTGATTTCCGACT+GGG | - | chr3.1:46934009-46934028 | MS.gene04573:intron | 45.0% |
| !! | GGTGATGGAGGTACTCATAA+GGG | - | chr3.1:46933658-46933677 | MS.gene04573:CDS | 45.0% |
| !! | TCAGCTCTAGAGTCTAGACT+TGG | - | chr3.1:46932712-46932731 | MS.gene04573:CDS | 45.0% |
| !! | TGGTGATGGAGGTACTCATA+AGG | - | chr3.1:46933657-46933676 | MS.gene04573:CDS | 45.0% |
| !!! | AGTTTTAGAGCCACGGCTTT+TGG | - | chr3.1:46935355-46935374 | MS.gene04573:intron | 45.0% |
| !!! | GACCGTTAGTTTTAGAGCCA+CGG | - | chr3.1:46935348-46935367 | MS.gene04573:intron | 45.0% |
| AACCTGTGTTTCAGCTCCGA+CGG | + | chr3.1:46935135-46935154 | None:intergenic | 50.0% | |
| AAGGTCAACTCCCAGTCACT+TGG | - | chr3.1:46935465-46935484 | MS.gene04573:CDS | 50.0% | |
| AGCACCTTATGCCGAGTCAT+TGG | - | chr3.1:46935229-46935248 | MS.gene04573:intron | 50.0% | |
| ATGATCTTTCCTGTCCCCGA+AGG | + | chr3.1:46933178-46933197 | None:intergenic | 50.0% | |
| CCGCCACAAGGACATAAACA+TGG | - | chr3.1:46933444-46933463 | MS.gene04573:intron | 50.0% | |
| GATGCTGTTAAAGCAGCCGT+CGG | - | chr3.1:46935116-46935135 | MS.gene04573:intron | 50.0% | |
| GCACCTTATGCCGAGTCATT+GGG | - | chr3.1:46935230-46935249 | MS.gene04573:intron | 50.0% | |
| GCCACATAGAGATCTTGCAC+GGG | - | chr3.1:46934494-46934513 | MS.gene04573:intron | 50.0% | |
| GCGTCCCTACCCATAATACT+GGG | - | chr3.1:46933147-46933166 | MS.gene04573:intron | 50.0% | |
| GCGTCCTATACTAGCTGGAA+TGG | - | chr3.1:46933781-46933800 | MS.gene04573:intron | 50.0% | |
| GCTAGTGGAAGGATCACAGT+TGG | - | chr3.1:46934675-46934694 | MS.gene04573:intron | 50.0% | |
| GGAAGCAGTTCGAAAGTCGT+TGG | - | chr3.1:46934515-46934534 | MS.gene04573:intron | 50.0% | |
| GGAGAGTCATGCGTGAAAGA+AGG | + | chr3.1:46931504-46931523 | None:intergenic | 50.0% | |
| GTCTACCTTCCAGCCACAAA+AGG | + | chr3.1:46933474-46933493 | None:intergenic | 50.0% | |
| TAGATGCTCTTGTTGCCGCT+TGG | - | chr3.1:46935384-46935403 | MS.gene04573:intron | 50.0% | |
| TCATAGCATCTTCCCCACCT+AGG | + | chr3.1:46933357-46933376 | None:intergenic | 50.0% | |
| TCCCGTGCAAGATCTCTATG+TGG | + | chr3.1:46934498-46934517 | None:intergenic | 50.0% | |
| TCTTTCACGCATGACTCTCC+AGG | - | chr3.1:46931504-46931523 | MS.gene04573:CDS | 50.0% | |
| TGCGTCCCTACCCATAATAC+TGG | - | chr3.1:46933146-46933165 | MS.gene04573:intron | 50.0% | |
| TGGGGTTACTACCAATGGAG+AGG | + | chr3.1:46931591-46931610 | None:intergenic | 50.0% | |
| TTCACTACCTGGCAACCAAG+CGG | + | chr3.1:46935402-46935421 | None:intergenic | 50.0% | |
| TTGCCAGGTAGTGAAGGAGA+TGG | - | chr3.1:46935407-46935426 | MS.gene04573:intron | 50.0% | |
| ! | CATGGATACCCTTTTGTGGC+TGG | - | chr3.1:46933462-46933481 | MS.gene04573:intron | 50.0% |
| ! | CTTGGTATGGTGCTAGTGGA+AGG | - | chr3.1:46934664-46934683 | MS.gene04573:intron | 50.0% |
| ! | GATACCCTTTTGTGGCTGGA+AGG | - | chr3.1:46933466-46933485 | MS.gene04573:intron | 50.0% |
| ! | GGCATAAGGTGCTTCACCAA+CGG | + | chr3.1:46935222-46935241 | None:intergenic | 50.0% |
| ! | TTTCCGCACAATGTTGGCCT+TGG | - | chr3.1:46932799-46932818 | MS.gene04573:CDS | 50.0% |
| !! | AATTCCAGCATTGACGGCAG+AGG | + | chr3.1:46934089-46934108 | None:intergenic | 50.0% |
| !! | ATGTTGGCCTTGGAGCTACT+AGG | - | chr3.1:46932809-46932828 | MS.gene04573:CDS | 50.0% |
| ATCTCCTCTGCCGTCAATGC+TGG | - | chr3.1:46934082-46934101 | MS.gene04573:CDS | 55.0% | |
| CAATGCCTTACCGCGACACA+AGG | + | chr3.1:46933012-46933031 | None:intergenic | 55.0% | |
| GAGCTCACAATCCCTTTCCG+TGG | - | chr3.1:46935263-46935282 | MS.gene04573:intron | 55.0% | |
| GCGCCCATTCCAGCTAGTAT+AGG | + | chr3.1:46933788-46933807 | None:intergenic | 55.0% | |
| GCTCCAAGGCCAACATTGTG+CGG | + | chr3.1:46932805-46932824 | None:intergenic | 55.0% | |
| GCTTGGTTGCCAGGTAGTGA+AGG | - | chr3.1:46935401-46935420 | MS.gene04573:intron | 55.0% | |
| TGGGATAATCCTTCGGGGAC+AGG | - | chr3.1:46933166-46933185 | MS.gene04573:intron | 55.0% | |
| TTGCTCCTTGTGTCGCGGTA+AGG | - | chr3.1:46933004-46933023 | MS.gene04573:CDS | 55.0% | |
| ! | TCGCCCAATGACTCGGCATA+AGG | + | chr3.1:46935236-46935255 | None:intergenic | 55.0% |
| AGCCGTCGGAGCTGAAACAC+AGG | - | chr3.1:46935130-46935149 | MS.gene04573:intron | 60.0% | |
| TTGCAAGGTCAGCCGCCACA+AGG | - | chr3.1:46933432-46933451 | MS.gene04573:intron | 60.0% | |
| ! | CTTGTTGCCGCTTGGTTGCC+AGG | - | chr3.1:46935392-46935411 | MS.gene04573:intron | 60.0% |
| !! | TGCAGGTGATGGTGGCTGTC+AGG | - | chr3.1:46934192-46934211 | MS.gene04573:intron | 60.0% |
| TCGGTCGAGCCCTTCCCAGT+CGG | + | chr3.1:46934026-46934045 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 46931448 | 46935586 | 46931448 | ID=MS.gene04573 |
| chr3.1 | mRNA | 46931448 | 46935586 | 46931448 | ID=MS.gene04573.t1;Parent=MS.gene04573 |
| chr3.1 | exon | 46935436 | 46935586 | 46935436 | ID=MS.gene04573.t1.exon1;Parent=MS.gene04573.t1 |
| chr3.1 | CDS | 46935436 | 46935586 | 46935436 | ID=cds.MS.gene04573.t1;Parent=MS.gene04573.t1 |
| chr3.1 | exon | 46934204 | 46934408 | 46934204 | ID=MS.gene04573.t1.exon2;Parent=MS.gene04573.t1 |
| chr3.1 | CDS | 46934204 | 46934408 | 46934204 | ID=cds.MS.gene04573.t1;Parent=MS.gene04573.t1 |
| chr3.1 | exon | 46934014 | 46934104 | 46934014 | ID=MS.gene04573.t1.exon3;Parent=MS.gene04573.t1 |
| chr3.1 | CDS | 46934014 | 46934104 | 46934014 | ID=cds.MS.gene04573.t1;Parent=MS.gene04573.t1 |
| chr3.1 | exon | 46933547 | 46933692 | 46933547 | ID=MS.gene04573.t1.exon4;Parent=MS.gene04573.t1 |
| chr3.1 | CDS | 46933547 | 46933692 | 46933547 | ID=cds.MS.gene04573.t1;Parent=MS.gene04573.t1 |
| chr3.1 | exon | 46933167 | 46933410 | 46933167 | ID=MS.gene04573.t1.exon5;Parent=MS.gene04573.t1 |
| chr3.1 | CDS | 46933167 | 46933410 | 46933167 | ID=cds.MS.gene04573.t1;Parent=MS.gene04573.t1 |
| chr3.1 | exon | 46932920 | 46933024 | 46932920 | ID=MS.gene04573.t1.exon6;Parent=MS.gene04573.t1 |
| chr3.1 | CDS | 46932920 | 46933024 | 46932920 | ID=cds.MS.gene04573.t1;Parent=MS.gene04573.t1 |
| chr3.1 | exon | 46932655 | 46932837 | 46932655 | ID=MS.gene04573.t1.exon7;Parent=MS.gene04573.t1 |
| chr3.1 | CDS | 46932655 | 46932837 | 46932655 | ID=cds.MS.gene04573.t1;Parent=MS.gene04573.t1 |
| chr3.1 | exon | 46932338 | 46932539 | 46932338 | ID=MS.gene04573.t1.exon8;Parent=MS.gene04573.t1 |
| chr3.1 | CDS | 46932338 | 46932539 | 46932338 | ID=cds.MS.gene04573.t1;Parent=MS.gene04573.t1 |
| chr3.1 | exon | 46931448 | 46931932 | 46931448 | ID=MS.gene04573.t1.exon9;Parent=MS.gene04573.t1 |
| chr3.1 | CDS | 46931448 | 46931932 | 46931448 | ID=cds.MS.gene04573.t1;Parent=MS.gene04573.t1 |
| Gene Sequence |
| Protein sequence |
