Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43773.t1 | XP_003615587.1 | 94 | 603 | 36 | 0 | 1 | 603 | 1 | 603 | 0.00E+00 | 1166.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43773.t1 | A7LXU3 | 30.6 | 654 | 375 | 20 | 8 | 604 | 30 | 661 | 1.2e-74 | 282.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43773.t1 | G7K6A7 | 94.0 | 603 | 36 | 0 | 1 | 603 | 1 | 603 | 0.0e+00 | 1166.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054102 | MS.gene43773 | -0.820554 | 6.45E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene43773 | MS.gene04462 | PPI |
| MS.gene43773 | MS.gene25841 | PPI |
| MS.gene02092 | MS.gene43773 | PPI |
| MS.gene43773 | MS.gene003292 | PPI |
| MS.gene43773 | MS.gene04573 | PPI |
| MS.gene71046 | MS.gene43773 | PPI |
| MS.gene43773 | MS.gene04049 | PPI |
| MS.gene43773 | MS.gene74550 | PPI |
| MS.gene70763 | MS.gene43773 | PPI |
| MS.gene05603 | MS.gene43773 | PPI |
| MS.gene43773 | MS.gene044157 | PPI |
| MS.gene43773 | MS.gene03078 | PPI |
| MS.gene43773 | MS.gene88756 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43773.t1 | MTR_5g069800 | 93.874 | 604 | 37 | 0 | 1 | 604 | 1 | 604 | 0.0 | 1180 |
| MS.gene43773.t1 | MTR_5g069740 | 90.232 | 604 | 47 | 1 | 1 | 604 | 1 | 592 | 0.0 | 1129 |
| MS.gene43773.t1 | MTR_3g462820 | 75.207 | 605 | 148 | 2 | 1 | 605 | 18 | 620 | 0.0 | 956 |
| MS.gene43773.t1 | MTR_6g028090 | 55.721 | 603 | 254 | 5 | 4 | 601 | 27 | 621 | 0.0 | 694 |
| MS.gene43773.t1 | MTR_6g028100 | 55.980 | 602 | 252 | 5 | 4 | 600 | 27 | 620 | 0.0 | 685 |
| MS.gene43773.t1 | MTR_6g028110 | 55.482 | 602 | 255 | 5 | 4 | 600 | 28 | 621 | 0.0 | 683 |
| MS.gene43773.t1 | MTR_6g028110 | 55.482 | 602 | 255 | 5 | 4 | 600 | 28 | 621 | 0.0 | 682 |
| MS.gene43773.t1 | MTR_3g079750 | 54.908 | 601 | 266 | 4 | 4 | 603 | 27 | 623 | 0.0 | 680 |
| MS.gene43773.t1 | MTR_2g030000 | 55.017 | 598 | 264 | 4 | 4 | 600 | 29 | 622 | 0.0 | 672 |
| MS.gene43773.t1 | MTR_6g028120 | 54.153 | 602 | 263 | 5 | 4 | 600 | 8 | 601 | 0.0 | 666 |
| MS.gene43773.t1 | MTR_7g086030 | 53.422 | 599 | 274 | 4 | 4 | 601 | 3 | 597 | 0.0 | 660 |
| MS.gene43773.t1 | MTR_7g086030 | 53.422 | 599 | 274 | 4 | 4 | 601 | 28 | 622 | 0.0 | 659 |
| MS.gene43773.t1 | MTR_7g086010 | 50.773 | 453 | 212 | 2 | 4 | 447 | 28 | 478 | 1.72e-164 | 478 |
| MS.gene43773.t1 | MTR_5g062650 | 25.732 | 649 | 359 | 25 | 15 | 604 | 60 | 644 | 5.85e-39 | 153 |
| MS.gene43773.t1 | MTR_3g074060 | 25.649 | 655 | 365 | 24 | 5 | 602 | 44 | 633 | 6.78e-38 | 150 |
| MS.gene43773.t1 | MTR_5g062370 | 25.460 | 652 | 374 | 26 | 5 | 604 | 50 | 641 | 3.34e-37 | 148 |
| MS.gene43773.t1 | MTR_5g062320 | 25.000 | 652 | 377 | 25 | 5 | 604 | 48 | 639 | 5.44e-37 | 147 |
| MS.gene43773.t1 | MTR_5g062430 | 26.334 | 581 | 341 | 23 | 86 | 604 | 86 | 641 | 1.10e-36 | 146 |
| MS.gene43773.t1 | MTR_7g109390 | 26.049 | 572 | 331 | 25 | 93 | 604 | 86 | 625 | 7.24e-34 | 138 |
| MS.gene43773.t1 | MTR_4g094285 | 26.825 | 630 | 348 | 28 | 5 | 592 | 54 | 612 | 1.92e-33 | 136 |
| MS.gene43773.t1 | MTR_1g087240 | 24.169 | 662 | 363 | 27 | 5 | 604 | 37 | 621 | 1.82e-31 | 130 |
| MS.gene43773.t1 | MTR_5g069850 | 85.000 | 60 | 9 | 0 | 529 | 588 | 1 | 60 | 1.86e-31 | 116 |
| MS.gene43773.t1 | MTR_5g062370 | 25.210 | 595 | 350 | 24 | 5 | 563 | 50 | 585 | 9.46e-31 | 127 |
| MS.gene43773.t1 | MTR_2g008240 | 25.879 | 626 | 359 | 26 | 5 | 592 | 55 | 613 | 5.79e-29 | 122 |
| MS.gene43773.t1 | MTR_1g106860 | 25.043 | 587 | 350 | 28 | 85 | 608 | 73 | 632 | 1.56e-27 | 118 |
| MS.gene43773.t1 | MTR_5g030860 | 24.642 | 629 | 334 | 26 | 5 | 573 | 42 | 590 | 1.77e-27 | 118 |
| MS.gene43773.t1 | MTR_2g034720 | 25.220 | 567 | 355 | 22 | 86 | 603 | 77 | 623 | 3.21e-27 | 117 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43773.t1 | AT3G47000 | 69.347 | 597 | 179 | 3 | 5 | 600 | 10 | 603 | 0.0 | 874 |
| MS.gene43773.t1 | AT3G47010 | 67.000 | 600 | 194 | 3 | 5 | 603 | 11 | 607 | 0.0 | 854 |
| MS.gene43773.t1 | AT3G47040 | 67.055 | 601 | 194 | 3 | 5 | 604 | 10 | 607 | 0.0 | 854 |
| MS.gene43773.t1 | AT3G47010 | 66.833 | 600 | 194 | 4 | 5 | 603 | 11 | 606 | 0.0 | 849 |
| MS.gene43773.t1 | AT3G47050 | 68.167 | 600 | 179 | 5 | 5 | 600 | 10 | 601 | 0.0 | 840 |
| MS.gene43773.t1 | AT3G47040 | 64.377 | 626 | 194 | 4 | 5 | 604 | 10 | 632 | 0.0 | 840 |
| MS.gene43773.t1 | AT3G47040 | 62.145 | 634 | 203 | 6 | 5 | 604 | 10 | 640 | 0.0 | 803 |
| MS.gene43773.t1 | AT5G04885 | 54.395 | 603 | 266 | 6 | 2 | 600 | 41 | 638 | 0.0 | 674 |
| MS.gene43773.t1 | AT5G04885 | 54.395 | 603 | 266 | 6 | 2 | 600 | 24 | 621 | 0.0 | 674 |
| MS.gene43773.t1 | AT5G04885 | 54.395 | 603 | 266 | 6 | 2 | 600 | 24 | 621 | 0.0 | 674 |
| MS.gene43773.t1 | AT3G47000 | 70.748 | 441 | 128 | 1 | 5 | 445 | 10 | 449 | 0.0 | 671 |
| MS.gene43773.t1 | AT3G47010 | 67.800 | 441 | 141 | 1 | 5 | 445 | 11 | 450 | 0.0 | 647 |
| MS.gene43773.t1 | AT3G47040 | 67.574 | 441 | 142 | 1 | 5 | 445 | 10 | 449 | 0.0 | 645 |
| MS.gene43773.t1 | AT3G47000 | 69.626 | 428 | 127 | 2 | 174 | 600 | 1 | 426 | 0.0 | 638 |
| MS.gene43773.t1 | AT5G20950 | 52.843 | 598 | 276 | 5 | 4 | 600 | 103 | 695 | 0.0 | 636 |
| MS.gene43773.t1 | AT5G20950 | 52.843 | 598 | 276 | 5 | 4 | 600 | 25 | 617 | 0.0 | 636 |
| MS.gene43773.t1 | AT5G20950 | 52.843 | 598 | 276 | 5 | 4 | 600 | 25 | 617 | 0.0 | 636 |
| MS.gene43773.t1 | AT3G47010 | 66.357 | 431 | 141 | 3 | 174 | 603 | 1 | 428 | 0.0 | 616 |
| MS.gene43773.t1 | AT5G20940 | 51.913 | 601 | 279 | 6 | 2 | 600 | 29 | 621 | 0.0 | 613 |
| MS.gene43773.t1 | AT3G47050 | 67.553 | 376 | 115 | 2 | 5 | 377 | 10 | 381 | 0.0 | 539 |
| MS.gene43773.t1 | AT3G62710 | 46.508 | 630 | 286 | 14 | 4 | 600 | 37 | 648 | 0.0 | 531 |
| MS.gene43773.t1 | AT1G02640 | 25.077 | 646 | 365 | 26 | 9 | 602 | 48 | 626 | 8.93e-33 | 134 |
| MS.gene43773.t1 | AT5G49360 | 24.921 | 630 | 379 | 24 | 11 | 602 | 55 | 628 | 5.24e-31 | 129 |
| MS.gene43773.t1 | AT5G64570 | 25.493 | 608 | 345 | 23 | 5 | 573 | 59 | 597 | 4.02e-30 | 126 |
| MS.gene43773.t1 | AT3G19620 | 24.502 | 653 | 377 | 29 | 5 | 604 | 41 | 630 | 1.36e-29 | 125 |
| MS.gene43773.t1 | AT5G09730 | 24.178 | 608 | 355 | 20 | 4 | 573 | 48 | 587 | 8.85e-28 | 119 |
| MS.gene43773.t1 | AT1G78060 | 24.456 | 597 | 360 | 23 | 11 | 573 | 44 | 583 | 5.63e-27 | 117 |
| MS.gene43773.t1 | AT5G10560 | 24.242 | 627 | 350 | 25 | 5 | 573 | 42 | 601 | 2.84e-26 | 114 |
| MS.gene43773.t1 | AT5G64570 | 24.595 | 618 | 358 | 23 | 5 | 583 | 59 | 607 | 3.27e-26 | 114 |
Find 144 sgRNAs with CRISPR-Local
Find 266 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTTATTCCCTCTTGGTTA+TGG | 0.150094 | 5.1:+54315311 | MS.gene43773:CDS |
| GACATGACTTCTTATGTTTC+AGG | 0.158804 | 5.1:+54312369 | MS.gene43773:CDS |
| TTCTTAGCAGTTGCACTATT+TGG | 0.179068 | 5.1:-54311692 | None:intergenic |
| GAACTTGTAATCCCATTTAA+TGG | 0.213541 | 5.1:+54315029 | MS.gene43773:CDS |
| CCTTATTCCCTCTTGGTTAT+GGG | 0.218882 | 5.1:+54315312 | MS.gene43773:CDS |
| ACAATTCCAGCTCCATTAAA+TGG | 0.228949 | 5.1:-54315041 | None:intergenic |
| TCATTACGTTCTATGAATTC+TGG | 0.242355 | 5.1:-54314942 | None:intergenic |
| CCCATAACCAAGAGGGAATA+AGG | 0.250774 | 5.1:-54315312 | None:intergenic |
| AATTTCAGGCACAACTATAT+TGG | 0.253170 | 5.1:+54314860 | MS.gene43773:intron |
| AGCAAAGATCTGTCAGTTAA+AGG | 0.273779 | 5.1:-54313435 | None:intergenic |
| TAGTAACAGAACGTTCAATT+TGG | 0.293059 | 5.1:-54311512 | None:intergenic |
| ACCAATGGTGAAATCTTTAA+TGG | 0.307869 | 5.1:-54311544 | None:intergenic |
| GCATCAGTACAATAAATTAT+TGG | 0.314084 | 5.1:-54311788 | None:intergenic |
| ACAAGCTGTTTCAACCATTA+TGG | 0.332210 | 5.1:+54312697 | MS.gene43773:CDS |
| GGAGATGGAGGTACAGAAAA+AGG | 0.336684 | 5.1:+54312596 | MS.gene43773:CDS |
| TTTAACTGACAGATCTTTGC+TGG | 0.339407 | 5.1:+54313437 | MS.gene43773:CDS |
| ACACTTGTGATTCTAATATC+TGG | 0.340592 | 5.1:+54315089 | MS.gene43773:CDS |
| GATGAATTATGTCAACCTTA+TGG | 0.341677 | 5.1:+54313137 | MS.gene43773:CDS |
| GGATGGACATTTACTAAGTA+TGG | 0.343875 | 5.1:+54314590 | MS.gene43773:CDS |
| CATGTCAATTCCAGCATTAA+TGG | 0.351444 | 5.1:-54313189 | None:intergenic |
| AGTCATGTCTTGGACAATTT+CGG | 0.358561 | 5.1:-54312355 | None:intergenic |
| CACGGTAACAATAACGTCTA+TGG | 0.361228 | 5.1:+54311815 | MS.gene43773:CDS |
| GTCATCTGATTGGGCTGATA+TGG | 0.362204 | 5.1:+54311721 | MS.gene43773:CDS |
| GGAACTCATGCTGATGATAT+CGG | 0.371576 | 5.1:+54314554 | MS.gene43773:CDS |
| GCCTACCTCCCAGCCACAAA+TGG | 0.372066 | 5.1:-54312432 | None:intergenic |
| CTCTTGGCGTTCTTATTCAA+TGG | 0.379608 | 5.1:-54314518 | None:intergenic |
| AGGGGCTACCCATTTGTGGC+TGG | 0.380723 | 5.1:+54312423 | MS.gene43773:CDS |
| AGGTCTGCAAAGATCCTAGA+TGG | 0.390671 | 5.1:+54312301 | MS.gene43773:intron |
| TCTAATATCTGGAAGACCTT+TGG | 0.393745 | 5.1:+54315100 | MS.gene43773:CDS |
| CCATAACCAAGAGGGAATAA+GGG | 0.403111 | 5.1:-54315311 | None:intergenic |
| GCCAAGAGAATCCTTGTTGC+TGG | 0.408515 | 5.1:+54314533 | MS.gene43773:CDS |
| ATCTGGAAGACCTTTGGTCT+TGG | 0.409437 | 5.1:+54315106 | MS.gene43773:CDS |
| GGGGCTACCCATTTGTGGCT+GGG | 0.413579 | 5.1:+54312424 | MS.gene43773:CDS |
| CTTGTTGCGGCATGGTTGCC+TGG | 0.414148 | 5.1:+54315158 | MS.gene43773:CDS |
| TTAGCAGTTGCACTATTTGG+TGG | 0.417251 | 5.1:-54311689 | None:intergenic |
| GAAAGAAAAGCTAGGCTTCA+AGG | 0.425811 | 5.1:+54312784 | MS.gene43773:CDS |
| GGAATCACAGATGTTATCTT+CGG | 0.427323 | 5.1:+54315194 | MS.gene43773:CDS |
| GCATCATCAATCCTGGCTAT+TGG | 0.427539 | 5.1:-54313363 | None:intergenic |
| CATGAATTCACTCCTTCAAC+AGG | 0.428141 | 5.1:-54315281 | None:intergenic |
| GCCATTAAAGATTTCACCAT+TGG | 0.428169 | 5.1:+54311543 | MS.gene43773:CDS |
| CTTCGGGGATCATGACTTCA+AGG | 0.430718 | 5.1:+54315211 | MS.gene43773:CDS |
| AGAAGGAAGTGTCATCTGAT+TGG | 0.432915 | 5.1:+54311711 | MS.gene43773:CDS |
| GTTCTATGAATTCTGGTGTT+GGG | 0.439975 | 5.1:-54314935 | None:intergenic |
| GTAATCCCATTTAATGGAGC+TGG | 0.440659 | 5.1:+54315035 | MS.gene43773:CDS |
| AGTAACAGAACGTTCAATTT+GGG | 0.442472 | 5.1:-54311511 | None:intergenic |
| GAATCACAGATGTTATCTTC+GGG | 0.443316 | 5.1:+54315195 | MS.gene43773:CDS |
| GATGACCCCTTATTCCCTCT+TGG | 0.445616 | 5.1:+54315305 | MS.gene43773:CDS |
| CAATTCCAGCTCCATTAAAT+GGG | 0.449727 | 5.1:-54315040 | None:intergenic |
| ATGACTTTGAAAGAGAAGAT+TGG | 0.449827 | 5.1:+54311480 | MS.gene43773:CDS |
| TCATAGCATCTTCCCCATCT+AGG | 0.450563 | 5.1:-54312315 | None:intergenic |
| TATTGTACTGATGCTATTCA+CGG | 0.453578 | 5.1:+54311797 | MS.gene43773:CDS |
| AACTATATTGGATGCTGCTA+AGG | 0.453736 | 5.1:+54314872 | MS.gene43773:CDS |
| TTTCCTCACAACGTTGGCCT+CGG | 0.456574 | 5.1:+54311848 | MS.gene43773:CDS |
| GAAGGAAGTGTCATCTGATT+GGG | 0.460679 | 5.1:+54311712 | MS.gene43773:CDS |
| CAGCTTGATCAACCTGTTGA+AGG | 0.461725 | 5.1:+54315269 | MS.gene43773:CDS |
| AATGGAATGAAAGGTTTACT+AGG | 0.464263 | 5.1:-54314500 | None:intergenic |
| AAATAGTGCAACTGCTAAGA+AGG | 0.470452 | 5.1:+54311694 | MS.gene43773:CDS |
| TCAAAGTCATAAGAGAAAGA+AGG | 0.472645 | 5.1:-54311467 | None:intergenic |
| TGCTAAGGATGCTGTGGGAC+AGG | 0.475726 | 5.1:+54314887 | MS.gene43773:CDS |
| TGAAGCAGTTCGAAAGTCCT+TGG | 0.476629 | 5.1:+54314454 | MS.gene43773:CDS |
| GATATTAGAATCACAAGTGT+TGG | 0.476636 | 5.1:-54315086 | None:intergenic |
| GTATATGAATCCCTCTGAAC+CGG | 0.479953 | 5.1:+54311425 | MS.gene43773:CDS |
| GTTGACATCTCTAGTTCAAT+CGG | 0.480782 | 5.1:+54313332 | MS.gene43773:CDS |
| TTCTTATTCAATGGAATGAA+AGG | 0.484516 | 5.1:-54314509 | None:intergenic |
| GAACTCATGCTGATGATATC+GGG | 0.485480 | 5.1:+54314555 | MS.gene43773:CDS |
| TCCAAGGGGCTACCCATTTG+TGG | 0.486656 | 5.1:+54312419 | MS.gene43773:CDS |
| TCTAGTGGCCAGATCACAAT+TGG | 0.486949 | 5.1:+54314614 | MS.gene43773:CDS |
| GTCTCATATTCCAGCTGGAA+TGG | 0.487762 | 5.1:+54312719 | MS.gene43773:CDS |
| TCACCTCCACACTCAGCATA+GGG | 0.490280 | 5.1:-54314999 | None:intergenic |
| CGTTCTATGAATTCTGGTGT+TGG | 0.490481 | 5.1:-54314936 | None:intergenic |
| TTGACATCTCTAGTTCAATC+GGG | 0.490633 | 5.1:+54313333 | MS.gene43773:CDS |
| ATATTAGAATCACAAGTGTT+GGG | 0.490789 | 5.1:-54315085 | None:intergenic |
| ACTCTTCTAAACCAAGTCAT+TGG | 0.496062 | 5.1:-54315242 | None:intergenic |
| GCCACAAATGGGTAGCCCCT+TGG | 0.496947 | 5.1:-54312420 | None:intergenic |
| TCCAGCAACAAGGATTCTCT+TGG | 0.497425 | 5.1:-54314534 | None:intergenic |
| ATTCCATTTCCTTCACTACC+AGG | 0.500207 | 5.1:-54315176 | None:intergenic |
| GATCCACATGGCCCCGTATG+TGG | 0.501410 | 5.1:+54312664 | MS.gene43773:CDS |
| AAGGCTAACCAATTGTGATC+TGG | 0.501758 | 5.1:-54314622 | None:intergenic |
| GATTGGGCTGATATGGTTGA+CGG | 0.503500 | 5.1:+54311728 | MS.gene43773:CDS |
| AAACATAAGAAGTCATGTCT+TGG | 0.503886 | 5.1:-54312365 | None:intergenic |
| CTCAACGGCATCATCAATCC+TGG | 0.505700 | 5.1:-54313370 | None:intergenic |
| TTATGGTCTCATATTCCAGC+TGG | 0.513411 | 5.1:+54312714 | MS.gene43773:CDS |
| ATATCTACTTCCATTAATGC+TGG | 0.513950 | 5.1:+54313179 | MS.gene43773:CDS |
| TAACGATAATCTGAACCATA+AGG | 0.514827 | 5.1:-54313152 | None:intergenic |
| CTGGCGCTTGAATCACGGTT+AGG | 0.517230 | 5.1:+54311761 | MS.gene43773:CDS |
| AGATCTTTGCTGGATACTGT+TGG | 0.518240 | 5.1:+54313447 | MS.gene43773:CDS |
| CCTACCTCCCAGCCACAAAT+GGG | 0.519639 | 5.1:-54312431 | None:intergenic |
| GCTGGATACTGTTGGTTGCA+AGG | 0.519750 | 5.1:+54313455 | MS.gene43773:CDS |
| GAGTTTGACTCCATTCCAGC+TGG | 0.521515 | 5.1:-54312729 | None:intergenic |
| TCACTTGAACTTAGAGCAAG+TGG | 0.523247 | 5.1:+54312130 | MS.gene43773:CDS |
| TTTGTGATTTCTGACTGGGA+GGG | 0.536472 | 5.1:+54313110 | MS.gene43773:CDS |
| AGGGTAAACTACCAATGACT+TGG | 0.544683 | 5.1:+54315231 | MS.gene43773:CDS |
| GTTCTATACAATCCACATAC+GGG | 0.546133 | 5.1:-54312676 | None:intergenic |
| GCTGGAATATGAGACCATAA+TGG | 0.546993 | 5.1:-54312711 | None:intergenic |
| AACCTCCAGAAAATCATCCA+AGG | 0.549496 | 5.1:+54312403 | MS.gene43773:CDS |
| TGTTCTATACAATCCACATA+CGG | 0.551403 | 5.1:-54312677 | None:intergenic |
| TCTTATGTTTCAGGTTTGCA+AGG | 0.552090 | 5.1:+54312378 | MS.gene43773:CDS |
| GTGAAATCTTTAATGGCAGA+AGG | 0.554246 | 5.1:-54311537 | None:intergenic |
| TCGGGTATCAATGTGGAGGA+TGG | 0.556709 | 5.1:+54314573 | MS.gene43773:CDS |
| CATTAATGCTGGAATTGACA+TGG | 0.559007 | 5.1:+54313190 | MS.gene43773:CDS |
| CGAGCTTCAACCGGTTCAGA+GGG | 0.562394 | 5.1:-54311435 | None:intergenic |
| GGATGCTGCTAAGGATGCTG+TGG | 0.564728 | 5.1:+54314881 | MS.gene43773:CDS |
| GCGAGCTTCAACCGGTTCAG+AGG | 0.566050 | 5.1:-54311436 | None:intergenic |
| TTGCCTGGTAGTGAAGGAAA+TGG | 0.568579 | 5.1:+54315173 | MS.gene43773:CDS |
| TCCAACAAAATGTCTAGCAC+AGG | 0.571832 | 5.1:-54312576 | None:intergenic |
| TAGAAGCTCTTGTTGCGGCA+TGG | 0.572751 | 5.1:+54315150 | MS.gene43773:CDS |
| GGCTTCACCAATAGCAACAA+TGG | 0.575663 | 5.1:-54314976 | None:intergenic |
| AGAAGCTGGCGCTTGAATCA+CGG | 0.580598 | 5.1:+54311756 | MS.gene43773:CDS |
| CACTCTTAAAATCCGCTCAA+CGG | 0.581745 | 5.1:-54313385 | None:intergenic |
| GCTACCCATTTGTGGCTGGG+AGG | 0.583997 | 5.1:+54312427 | MS.gene43773:CDS |
| GGTCTGCAAAGATCCTAGAT+GGG | 0.587399 | 5.1:+54312302 | MS.gene43773:intron |
| CAGCATGAGTTCCAGCAACA+AGG | 0.588717 | 5.1:-54314544 | None:intergenic |
| ACCTCCAGAAAATCATCCAA+GGG | 0.588939 | 5.1:+54312404 | MS.gene43773:CDS |
| GTCACCTCCACACTCAGCAT+AGG | 0.590732 | 5.1:-54315000 | None:intergenic |
| GCTCCGAGGCCAACGTTGTG+AGG | 0.591912 | 5.1:-54311851 | None:intergenic |
| ACTATATTTCCTCACAACGT+TGG | 0.594556 | 5.1:+54311842 | MS.gene43773:CDS |
| TTTACTAAGTATGGATCTAG+TGG | 0.597699 | 5.1:+54314599 | MS.gene43773:CDS |
| ACCTCCACACTCAGCATAGG+GGG | 0.603901 | 5.1:-54314997 | None:intergenic |
| TTCAGAGGGATTCATATACT+CGG | 0.608107 | 5.1:-54311421 | None:intergenic |
| AAACTTTGTTCCAAGACCAA+AGG | 0.610030 | 5.1:-54315116 | None:intergenic |
| TGGAATGGAGTCAAACTCCA+TGG | 0.613942 | 5.1:+54312734 | MS.gene43773:CDS |
| CATAACCAAGAGGGAATAAG+GGG | 0.624050 | 5.1:-54315310 | None:intergenic |
| ACGTTGGCCTCGGAGCAACT+AGG | 0.636583 | 5.1:+54311858 | MS.gene43773:CDS |
| AAGCTAGCCCATAACCAAGA+GGG | 0.637396 | 5.1:-54315319 | None:intergenic |
| GCATGGTTGCCTGGTAGTGA+AGG | 0.640507 | 5.1:+54315167 | MS.gene43773:CDS |
| AATCCACATACGGGGCCATG+TGG | 0.640866 | 5.1:-54312667 | None:intergenic |
| GGATTGATGATGCCGTTGAG+CGG | 0.645720 | 5.1:+54313373 | MS.gene43773:CDS |
| AGATGCCTTACAGATACACT+AGG | 0.649143 | 5.1:-54312172 | None:intergenic |
| TGACATCTCTAGTTCAATCG+GGG | 0.650471 | 5.1:+54313334 | MS.gene43773:CDS |
| TAATCAGAAATCGATGACCA+TGG | 0.652717 | 5.1:-54312751 | None:intergenic |
| CACCTCCACACTCAGCATAG+GGG | 0.652884 | 5.1:-54314998 | None:intergenic |
| TTCGGGGATCATGACTTCAA+GGG | 0.656885 | 5.1:+54315212 | MS.gene43773:CDS |
| GTCTGCAAAGATCCTAGATG+GGG | 0.658282 | 5.1:+54312303 | MS.gene43773:CDS |
| AGACTTAGAGCAGATCCACA+TGG | 0.673162 | 5.1:+54312652 | MS.gene43773:CDS |
| GACATCTCTAGTTCAATCGG+GGG | 0.673392 | 5.1:+54313335 | MS.gene43773:CDS |
| GATGCTGCTAAGGATGCTGT+GGG | 0.685349 | 5.1:+54314882 | MS.gene43773:CDS |
| AATCACAGATGTTATCTTCG+GGG | 0.692931 | 5.1:+54315196 | MS.gene43773:CDS |
| TAAGCTAGCCCATAACCAAG+AGG | 0.693183 | 5.1:-54315320 | None:intergenic |
| TTCTATACAATCCACATACG+GGG | 0.694901 | 5.1:-54312675 | None:intergenic |
| AAAAGTAGAAGCTCTTGTTG+CGG | 0.696874 | 5.1:+54315145 | MS.gene43773:CDS |
| GATGATATCGGGTATCAATG+TGG | 0.699497 | 5.1:+54314566 | MS.gene43773:CDS |
| CCTCCAGAAAATCATCCAAG+GGG | 0.706643 | 5.1:+54312405 | MS.gene43773:CDS |
| GATATCGGGTATCAATGTGG+AGG | 0.736689 | 5.1:+54314569 | MS.gene43773:CDS |
| ACACAAACCTAGTTGCTCCG+AGG | 0.747671 | 5.1:-54311865 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGATACAAAAAAATAAAA+AGG | - | chr5.1:54314644-54314663 | None:intergenic | 10.0% |
| !! | TAAAATAAAAATGATAAGAA+GGG | - | chr5.1:54311896-54311915 | None:intergenic | 10.0% |
| !! | TTAAAATAAAAATGATAAGA+AGG | - | chr5.1:54311897-54311916 | None:intergenic | 10.0% |
| !!! | AAGTATTGATTTTTTTAAAA+CGG | - | chr5.1:54312484-54312503 | None:intergenic | 10.0% |
| !!! | ATTGATTAATTTGATATTTT+TGG | + | chr5.1:54314067-54314086 | MS.gene43773:intron | 10.0% |
| !!! | TTGATTAATTTGATATTTTT+GGG | + | chr5.1:54314068-54314087 | MS.gene43773:intron | 10.0% |
| !! | AAAAATGGTTTATTAAAACT+TGG | + | chr5.1:54314001-54314020 | MS.gene43773:intron | 15.0% |
| !! | AAAATGGTTTATTAAAACTT+GGG | + | chr5.1:54314002-54314021 | MS.gene43773:intron | 15.0% |
| !! | AATCTATGTTAAAATACTAT+GGG | - | chr5.1:54313231-54313250 | None:intergenic | 15.0% |
| !! | TACATTAAAAAAAGTTTATG+AGG | - | chr5.1:54313894-54313913 | None:intergenic | 15.0% |
| !!! | AATTATCAAACGATTTTATA+CGG | - | chr5.1:54313733-54313752 | None:intergenic | 15.0% |
| !!! | ATATAGTTTTTTTTGTTTGA+AGG | + | chr5.1:54314347-54314366 | MS.gene43773:intron | 15.0% |
| !!! | ATGAATTTTTCATATCTTAA+AGG | - | chr5.1:54313306-54313325 | None:intergenic | 15.0% |
| !!! | TCTGTTTTTAATTGTTTATA+TGG | - | chr5.1:54314752-54314771 | None:intergenic | 15.0% |
| !!! | TTTAAGATATGAAAAATTCA+TGG | + | chr5.1:54313305-54313324 | MS.gene43773:CDS | 15.0% |
| !!! | TTTTAATTGTTTATATGGAT+AGG | - | chr5.1:54314747-54314766 | None:intergenic | 15.0% |
| !! | AAATGGTTTATTAAAACTTG+GGG | + | chr5.1:54314003-54314022 | MS.gene43773:intron | 20.0% |
| !! | ATACATATAATTAGTACTTC+AGG | + | chr5.1:54312540-54312559 | MS.gene43773:intron | 20.0% |
| !! | ATCATATCAAGTAACAAAAA+TGG | + | chr5.1:54313986-54314005 | MS.gene43773:intron | 20.0% |
| !! | ATCTATGTTAAAATACTATG+GGG | - | chr5.1:54313230-54313249 | None:intergenic | 20.0% |
| !! | CAATCTATGTTAAAATACTA+TGG | - | chr5.1:54313232-54313251 | None:intergenic | 20.0% |
| !! | TCAATAACAAATTCAAAAGT+TGG | - | chr5.1:54312201-54312220 | None:intergenic | 20.0% |
| !!! | AAGCTTTGATTTTTCATTAT+TGG | + | chr5.1:54312055-54312074 | MS.gene43773:intron | 20.0% |
| !!! | ATCAAAACAATTTTCATTGA+GGG | + | chr5.1:54314779-54314798 | MS.gene43773:intron | 20.0% |
| !!! | GTAGATATATTTTTTCTTTC+TGG | + | chr5.1:54312806-54312825 | MS.gene43773:intron | 20.0% |
| !!! | TATTGATTTTTTTAAAACGG+TGG | - | chr5.1:54312481-54312500 | None:intergenic | 20.0% |
| !!! | TCAAATAAAGCATTTTGTTA+AGG | + | chr5.1:54313067-54313086 | MS.gene43773:intron | 20.0% |
| ! | AAATCTAAAAGAACTAGATC+AGG | + | chr5.1:54312945-54312964 | MS.gene43773:intron | 25.0% |
| ! | AACATTCATTCTCTTCATAT+AGG | - | chr5.1:54312924-54312943 | None:intergenic | 25.0% |
| ! | ACACTTATGTTCTAACATAT+TGG | + | chr5.1:54314403-54314422 | MS.gene43773:intron | 25.0% |
| ! | ACGAAATTCATATCAAAAAC+AGG | - | chr5.1:54314193-54314212 | None:intergenic | 25.0% |
| ! | AGAATACTATCAAATTTGTG+TGG | - | chr5.1:54313781-54313800 | None:intergenic | 25.0% |
| ! | ATATTAGAATCACAAGTGTT+GGG | - | chr5.1:54315088-54315107 | None:intergenic | 25.0% |
| ! | ATTGGAAAGATGCAAATTAA+AGG | - | chr5.1:54311920-54311939 | None:intergenic | 25.0% |
| ! | CAAAAAACAACACAATTTGA+TGG | - | chr5.1:54313618-54313637 | None:intergenic | 25.0% |
| ! | CTTATACTACTTTCATTTCT+TGG | + | chr5.1:54311603-54311622 | MS.gene43773:intron | 25.0% |
| ! | GCATCAGTACAATAAATTAT+TGG | - | chr5.1:54311791-54311810 | None:intergenic | 25.0% |
| ! | TAATTGCATAACACTAGAAA+TGG | - | chr5.1:54314689-54314708 | None:intergenic | 25.0% |
| ! | TTCTTATTCAATGGAATGAA+AGG | - | chr5.1:54314512-54314531 | None:intergenic | 25.0% |
| ! | TTGAAAAAAATATCCCACAT+TGG | - | chr5.1:54314312-54314331 | None:intergenic | 25.0% |
| !! | AAACAGGATTTTAAGCATTT+TGG | - | chr5.1:54314177-54314196 | None:intergenic | 25.0% |
| !! | AACAGGATTTTAAGCATTTT+GGG | - | chr5.1:54314176-54314195 | None:intergenic | 25.0% |
| !! | ATAGTATAATAGAGTACCAA+TGG | - | chr5.1:54311562-54311581 | None:intergenic | 25.0% |
| !! | GATCAAAACAATTTTCATTG+AGG | + | chr5.1:54314778-54314797 | MS.gene43773:intron | 25.0% |
| !!! | GATATTTTGAAAGAAAAGCT+AGG | + | chr5.1:54312776-54312795 | MS.gene43773:CDS | 25.0% |
| !!! | TATTGCGCTTTTAAAATTTC+AGG | + | chr5.1:54314846-54314865 | MS.gene43773:intron | 25.0% |
| !!! | TTTATTTTCGTGAATACTCA+CGG | + | chr5.1:54314138-54314157 | MS.gene43773:intron | 25.0% |
| AAACATAAGAAGTCATGTCT+TGG | - | chr5.1:54312368-54312387 | None:intergenic | 30.0% | |
| AATGGAATGAAAGGTTTACT+AGG | - | chr5.1:54314503-54314522 | None:intergenic | 30.0% | |
| AATTGATCCATGAGAAACTT+GGG | + | chr5.1:54313947-54313966 | MS.gene43773:intron | 30.0% | |
| AATTTCAGGCACAACTATAT+TGG | + | chr5.1:54314860-54314879 | MS.gene43773:intron | 30.0% | |
| ACACTTGTGATTCTAATATC+TGG | + | chr5.1:54315089-54315108 | MS.gene43773:CDS | 30.0% | |
| ACCAATGGTGAAATCTTTAA+TGG | - | chr5.1:54311547-54311566 | None:intergenic | 30.0% | |
| ACTACTTTCATTTCTTGGTA+CGG | + | chr5.1:54311608-54311627 | MS.gene43773:intron | 30.0% | |
| ACTCTCAACTATAGCTATTA+CGG | + | chr5.1:54313755-54313774 | MS.gene43773:intron | 30.0% | |
| ACTTGCATATGTGAATGAAT+AGG | + | chr5.1:54312281-54312300 | MS.gene43773:intron | 30.0% | |
| AGTAACAGAACGTTCAATTT+GGG | - | chr5.1:54311514-54311533 | None:intergenic | 30.0% | |
| AGTTCATTAACACAAGTCAA+AGG | + | chr5.1:54313843-54313862 | MS.gene43773:intron | 30.0% | |
| ATATATTCGTGAACATATGC+AGG | + | chr5.1:54313272-54313291 | MS.gene43773:intron | 30.0% | |
| ATATCTACTTCCATTAATGC+TGG | + | chr5.1:54313179-54313198 | MS.gene43773:CDS | 30.0% | |
| ATTCGACAAAAATGTATGCA+TGG | - | chr5.1:54312512-54312531 | None:intergenic | 30.0% | |
| CATCTAGTACTCACTTTAAA+TGG | + | chr5.1:54313579-54313598 | MS.gene43773:intron | 30.0% | |
| GAACTTGTAATCCCATTTAA+TGG | + | chr5.1:54315029-54315048 | MS.gene43773:CDS | 30.0% | |
| GATATTAGAATCACAAGTGT+TGG | - | chr5.1:54315089-54315108 | None:intergenic | 30.0% | |
| GATGAATTATGTCAACCTTA+TGG | + | chr5.1:54313137-54313156 | MS.gene43773:CDS | 30.0% | |
| GTTCATTAACACAAGTCAAA+GGG | + | chr5.1:54313844-54313863 | MS.gene43773:intron | 30.0% | |
| TAACGATAATCTGAACCATA+AGG | - | chr5.1:54313155-54313174 | None:intergenic | 30.0% | |
| TAAGTGTAGCAATTGAAAGT+TGG | - | chr5.1:54314390-54314409 | None:intergenic | 30.0% | |
| TAGTAACAGAACGTTCAATT+TGG | - | chr5.1:54311515-54311534 | None:intergenic | 30.0% | |
| TATTCTACTCGAAACTGAAA+TGG | + | chr5.1:54313795-54313814 | MS.gene43773:intron | 30.0% | |
| TCAAAGTCATAAGAGAAAGA+AGG | - | chr5.1:54311470-54311489 | None:intergenic | 30.0% | |
| TCATTACGTTCTATGAATTC+TGG | - | chr5.1:54314945-54314964 | None:intergenic | 30.0% | |
| TGTTCTATACAATCCACATA+CGG | - | chr5.1:54312680-54312699 | None:intergenic | 30.0% | |
| TTTACTAAGTATGGATCTAG+TGG | + | chr5.1:54314599-54314618 | MS.gene43773:CDS | 30.0% | |
| ! | ACAGAAAAAGGTGTAAATGA+GGG | + | chr5.1:54312608-54312627 | MS.gene43773:CDS | 30.0% |
| ! | ATGACTTTGAAAGAGAAGAT+TGG | + | chr5.1:54311480-54311499 | MS.gene43773:CDS | 30.0% |
| ! | ATTATTTAGCTCAAGCTTGT+CGG | + | chr5.1:54314102-54314121 | MS.gene43773:intron | 30.0% |
| ! | TACAGAAAAAGGTGTAAATG+AGG | + | chr5.1:54312607-54312626 | MS.gene43773:CDS | 30.0% |
| ! | TATTGTACTGATGCTATTCA+CGG | + | chr5.1:54311797-54311816 | MS.gene43773:CDS | 30.0% |
| ! | TCCTTGTATTTTGCAACTAA+GGG | + | chr5.1:54311651-54311670 | MS.gene43773:intron | 30.0% |
| ! | TTCTGGAAATTGATCGTTTA+TGG | + | chr5.1:54312823-54312842 | MS.gene43773:intron | 30.0% |
| !! | GATTTTAAGCATTTTGGGAA+TGG | - | chr5.1:54314171-54314190 | None:intergenic | 30.0% |
| !! | GCATGTTTGTATTGACTTAT+AGG | + | chr5.1:54311957-54311976 | MS.gene43773:intron | 30.0% |
| !! | TACATTGATAGCGTTTGTAT+AGG | - | chr5.1:54314279-54314298 | None:intergenic | 30.0% |
| !!! | CATCTTTCCAATTTTAGCTA+TGG | + | chr5.1:54311928-54311947 | MS.gene43773:intron | 30.0% |
| !!! | TCCTTGGTTTTGTTGAAAAA+CGG | + | chr5.1:54314470-54314489 | MS.gene43773:CDS | 30.0% |
| AAAAGTAGAAGCTCTTGTTG+CGG | + | chr5.1:54315145-54315164 | MS.gene43773:CDS | 35.0% | |
| AAAATGCATAATCACCTGTG+AGG | + | chr5.1:54312003-54312022 | MS.gene43773:intron | 35.0% | |
| AAACTTTGTTCCAAGACCAA+AGG | - | chr5.1:54315119-54315138 | None:intergenic | 35.0% | |
| AAAGGGAGAAAGGAAGAAAA+AGG | + | chr5.1:54313861-54313880 | MS.gene43773:intron | 35.0% | |
| AAATAGTGCAACTGCTAAGA+AGG | + | chr5.1:54311694-54311713 | MS.gene43773:CDS | 35.0% | |
| AAATGCATAATCACCTGTGA+GGG | + | chr5.1:54312004-54312023 | MS.gene43773:intron | 35.0% | |
| AACTATATTGGATGCTGCTA+AGG | + | chr5.1:54314872-54314891 | MS.gene43773:CDS | 35.0% | |
| AATCACAGATGTTATCTTCG+GGG | + | chr5.1:54315196-54315215 | MS.gene43773:CDS | 35.0% | |
| ACAATTCCAGCTCCATTAAA+TGG | - | chr5.1:54315044-54315063 | None:intergenic | 35.0% | |
| ACTATATTTCCTCACAACGT+TGG | + | chr5.1:54311842-54311861 | MS.gene43773:CDS | 35.0% | |
| ACTCTTCTAAACCAAGTCAT+TGG | - | chr5.1:54315245-54315264 | None:intergenic | 35.0% | |
| AGCAAAGATCTGTCAGTTAA+AGG | - | chr5.1:54313438-54313457 | None:intergenic | 35.0% | |
| AGTCATGTCTTGGACAATTT+CGG | - | chr5.1:54312358-54312377 | None:intergenic | 35.0% | |
| ATTACCACCGAAGAGATTAT+CGG | + | chr5.1:54313660-54313679 | MS.gene43773:intron | 35.0% | |
| CAATTCCAGCTCCATTAAAT+GGG | - | chr5.1:54315043-54315062 | None:intergenic | 35.0% | |
| CAATTGATCCATGAGAAACT+TGG | + | chr5.1:54313946-54313965 | MS.gene43773:intron | 35.0% | |
| CATGTCAATTCCAGCATTAA+TGG | - | chr5.1:54313192-54313211 | None:intergenic | 35.0% | |
| CATTAATGCTGGAATTGACA+TGG | + | chr5.1:54313190-54313209 | MS.gene43773:CDS | 35.0% | |
| CCTTTGTCCATAGCTAAAAT+TGG | - | chr5.1:54311938-54311957 | None:intergenic | 35.0% | |
| GAATCACAGATGTTATCTTC+GGG | + | chr5.1:54315195-54315214 | MS.gene43773:CDS | 35.0% | |
| GACATGACTTCTTATGTTTC+AGG | + | chr5.1:54312369-54312388 | MS.gene43773:CDS | 35.0% | |
| GCCATTAAAGATTTCACCAT+TGG | + | chr5.1:54311543-54311562 | MS.gene43773:CDS | 35.0% | |
| GGAAATTGATCGTTTATGGA+TGG | + | chr5.1:54312827-54312846 | MS.gene43773:intron | 35.0% | |
| GGAATCACAGATGTTATCTT+CGG | + | chr5.1:54315194-54315213 | MS.gene43773:CDS | 35.0% | |
| GGATGGACATTTACTAAGTA+TGG | + | chr5.1:54314590-54314609 | MS.gene43773:CDS | 35.0% | |
| GTAACAGTCAACTAACGAAT+TGG | - | chr5.1:54313698-54313717 | None:intergenic | 35.0% | |
| GTATGTGATCTATCCAATGT+GGG | + | chr5.1:54314296-54314315 | MS.gene43773:intron | 35.0% | |
| GTGAAATCTTTAATGGCAGA+AGG | - | chr5.1:54311540-54311559 | None:intergenic | 35.0% | |
| GTTCTATACAATCCACATAC+GGG | - | chr5.1:54312679-54312698 | None:intergenic | 35.0% | |
| GTTCTATGAATTCTGGTGTT+GGG | - | chr5.1:54314938-54314957 | None:intergenic | 35.0% | |
| TAATCAGAAATCGATGACCA+TGG | - | chr5.1:54312754-54312773 | None:intergenic | 35.0% | |
| TCACAAAATCAGCACTCTAA+AGG | + | chr5.1:54314231-54314250 | MS.gene43773:intron | 35.0% | |
| TCCCTTAGTTGCAAAATACA+AGG | - | chr5.1:54311655-54311674 | None:intergenic | 35.0% | |
| TCTAATATCTGGAAGACCTT+TGG | + | chr5.1:54315100-54315119 | MS.gene43773:CDS | 35.0% | |
| TGTATGTGATCTATCCAATG+TGG | + | chr5.1:54314295-54314314 | MS.gene43773:intron | 35.0% | |
| TTCAGAGGGATTCATATACT+CGG | - | chr5.1:54311424-54311443 | None:intergenic | 35.0% | |
| TTCTATACAATCCACATACG+GGG | - | chr5.1:54312678-54312697 | None:intergenic | 35.0% | |
| TTCTTAGCAGTTGCACTATT+TGG | - | chr5.1:54311695-54311714 | None:intergenic | 35.0% | |
| TTTAACTGACAGATCTTTGC+TGG | + | chr5.1:54313437-54313456 | MS.gene43773:CDS | 35.0% | |
| ! | AAAATCAGCACTCTAAAGGA+TGG | + | chr5.1:54314235-54314254 | MS.gene43773:intron | 35.0% |
| ! | AAGGTCAATTTTCCACTGTA+GGG | + | chr5.1:54313086-54313105 | MS.gene43773:intron | 35.0% |
| ! | ACAAGCTGTTTCAACCATTA+TGG | + | chr5.1:54312697-54312716 | MS.gene43773:CDS | 35.0% |
| ! | CAGAAAAAGGTGTAAATGAG+GGG | + | chr5.1:54312609-54312628 | MS.gene43773:CDS | 35.0% |
| ! | CTCCTTGTATTTTGCAACTA+AGG | + | chr5.1:54311650-54311669 | MS.gene43773:intron | 35.0% |
| ! | GTTGACATCTCTAGTTCAAT+CGG | + | chr5.1:54313332-54313351 | MS.gene43773:CDS | 35.0% |
| ! | TAAGGTCAATTTTCCACTGT+AGG | + | chr5.1:54313085-54313104 | MS.gene43773:intron | 35.0% |
| ! | TCTTCGGTGGTAATTTTTCA+AGG | - | chr5.1:54313654-54313673 | None:intergenic | 35.0% |
| ! | TCTTTTGCCATTGTTGCTAT+TGG | + | chr5.1:54314969-54314988 | MS.gene43773:CDS | 35.0% |
| ! | TTGACATCTCTAGTTCAATC+GGG | + | chr5.1:54313333-54313352 | MS.gene43773:CDS | 35.0% |
| !! | ATTGATAGCGTTTGTATAGG+AGG | - | chr5.1:54314276-54314295 | None:intergenic | 35.0% |
| !! | TCCGTTTTTCAACAAAACCA+AGG | - | chr5.1:54314474-54314493 | None:intergenic | 35.0% |
| !! | TCTTATGTTTCAGGTTTGCA+AGG | + | chr5.1:54312378-54312397 | MS.gene43773:CDS | 35.0% |
| !!! | AGTGCTGATTTTGTGATGAT+CGG | - | chr5.1:54314227-54314246 | None:intergenic | 35.0% |
| !!! | CCAATTTTAGCTATGGACAA+AGG | + | chr5.1:54311935-54311954 | MS.gene43773:intron | 35.0% |
| !!! | GGTTTTGTTGAAAAACGGAA+AGG | + | chr5.1:54314475-54314494 | MS.gene43773:CDS | 35.0% |
| AACACAAGTCAAAGGGAGAA+AGG | + | chr5.1:54313851-54313870 | MS.gene43773:intron | 40.0% | |
| AACCTCCAGAAAATCATCCA+AGG | + | chr5.1:54312403-54312422 | MS.gene43773:CDS | 40.0% | |
| AAGGCTAACCAATTGTGATC+TGG | - | chr5.1:54314625-54314644 | None:intergenic | 40.0% | |
| AATGCATAATCACCTGTGAG+GGG | + | chr5.1:54312005-54312024 | MS.gene43773:intron | 40.0% | |
| ACCTCCAGAAAATCATCCAA+GGG | + | chr5.1:54312404-54312423 | MS.gene43773:CDS | 40.0% | |
| ACTCAACCCGATAATCTCTT+CGG | - | chr5.1:54313670-54313689 | None:intergenic | 40.0% | |
| ACTTGGGAACAAGGATAACA+CGG | + | chr5.1:54313963-54313982 | MS.gene43773:intron | 40.0% | |
| AGATCTTTGCTGGATACTGT+TGG | + | chr5.1:54313447-54313466 | MS.gene43773:CDS | 40.0% | |
| AGATGCCTTACAGATACACT+AGG | - | chr5.1:54312175-54312194 | None:intergenic | 40.0% | |
| AGGGTAAACTACCAATGACT+TGG | + | chr5.1:54315231-54315250 | MS.gene43773:CDS | 40.0% | |
| ATTCCATTTCCTTCACTACC+AGG | - | chr5.1:54315179-54315198 | None:intergenic | 40.0% | |
| CAAGGTAAGTGAAGTTTAGC+TGG | + | chr5.1:54313473-54313492 | MS.gene43773:intron | 40.0% | |
| CACGGTAACAATAACGTCTA+TGG | + | chr5.1:54311815-54311834 | MS.gene43773:CDS | 40.0% | |
| CACTCTTAAAATCCGCTCAA+CGG | - | chr5.1:54313388-54313407 | None:intergenic | 40.0% | |
| CATAACCAAGAGGGAATAAG+GGG | - | chr5.1:54315313-54315332 | None:intergenic | 40.0% | |
| CATGAATTCACTCCTTCAAC+AGG | - | chr5.1:54315284-54315303 | None:intergenic | 40.0% | |
| CCATAACCAAGAGGGAATAA+GGG | - | chr5.1:54315314-54315333 | None:intergenic | 40.0% | |
| CCTTATTCCCTCTTGGTTAT+GGG | + | chr5.1:54315312-54315331 | MS.gene43773:CDS | 40.0% | |
| CGTTCTATGAATTCTGGTGT+TGG | - | chr5.1:54314939-54314958 | None:intergenic | 40.0% | |
| CTCTTGGCGTTCTTATTCAA+TGG | - | chr5.1:54314521-54314540 | None:intergenic | 40.0% | |
| GAAAGAAAAGCTAGGCTTCA+AGG | + | chr5.1:54312784-54312803 | MS.gene43773:CDS | 40.0% | |
| GAAATCACAAAACCCTACAG+TGG | - | chr5.1:54313101-54313120 | None:intergenic | 40.0% | |
| GAACTCATGCTGATGATATC+GGG | + | chr5.1:54314555-54314574 | MS.gene43773:CDS | 40.0% | |
| GATGATATCGGGTATCAATG+TGG | + | chr5.1:54314566-54314585 | MS.gene43773:CDS | 40.0% | |
| GCTGGAATATGAGACCATAA+TGG | - | chr5.1:54312714-54312733 | None:intergenic | 40.0% | |
| GGAACTCATGCTGATGATAT+CGG | + | chr5.1:54314554-54314573 | MS.gene43773:CDS | 40.0% | |
| GTAATCCCATTTAATGGAGC+TGG | + | chr5.1:54315035-54315054 | MS.gene43773:CDS | 40.0% | |
| GTATATGAATCCCTCTGAAC+CGG | + | chr5.1:54311425-54311444 | MS.gene43773:CDS | 40.0% | |
| TAGCTCCTAGTGTATCTGTA+AGG | + | chr5.1:54312167-54312186 | MS.gene43773:intron | 40.0% | |
| TCACTTGAACTTAGAGCAAG+TGG | + | chr5.1:54312130-54312149 | MS.gene43773:CDS | 40.0% | |
| TCCAACAAAATGTCTAGCAC+AGG | - | chr5.1:54312579-54312598 | None:intergenic | 40.0% | |
| TTAAAACTTGGGGAGCAAGT+TGG | + | chr5.1:54314013-54314032 | MS.gene43773:intron | 40.0% | |
| TTACCACCGAAGAGATTATC+GGG | + | chr5.1:54313661-54313680 | MS.gene43773:intron | 40.0% | |
| TTAGCAGTTGCACTATTTGG+TGG | - | chr5.1:54311692-54311711 | None:intergenic | 40.0% | |
| TTATGGTCTCATATTCCAGC+TGG | + | chr5.1:54312714-54312733 | MS.gene43773:CDS | 40.0% | |
| TTTGTGATTTCTGACTGGGA+GGG | + | chr5.1:54313110-54313129 | MS.gene43773:CDS | 40.0% | |
| ! | AGACATTTTGTTGGAGATGG+AGG | + | chr5.1:54312584-54312603 | MS.gene43773:CDS | 40.0% |
| ! | CTGATTTTGTGATGATCGGA+TGG | - | chr5.1:54314223-54314242 | None:intergenic | 40.0% |
| ! | GCTAGACATTTTGTTGGAGA+TGG | + | chr5.1:54312581-54312600 | MS.gene43773:CDS | 40.0% |
| ! | TGACATCTCTAGTTCAATCG+GGG | + | chr5.1:54313334-54313353 | MS.gene43773:CDS | 40.0% |
| ! | TTTTGTGATTTCTGACTGGG+AGG | + | chr5.1:54313109-54313128 | MS.gene43773:CDS | 40.0% |
| ! | TTTTTGATGCGAGCTTCAAC+CGG | - | chr5.1:54311447-54311466 | None:intergenic | 40.0% |
| !! | AGAAGGAAGTGTCATCTGAT+TGG | + | chr5.1:54311711-54311730 | MS.gene43773:CDS | 40.0% |
| !! | AGGGTTTTGTGATTTCTGAC+TGG | + | chr5.1:54313105-54313124 | MS.gene43773:intron | 40.0% |
| !! | GAAGGAAGTGTCATCTGATT+GGG | + | chr5.1:54311712-54311731 | MS.gene43773:CDS | 40.0% |
| !! | GGGTTTTGTGATTTCTGACT+GGG | + | chr5.1:54313106-54313125 | MS.gene43773:intron | 40.0% |
| !! | TTGGATGATTTTCTGGAGGT+TGG | - | chr5.1:54312404-54312423 | None:intergenic | 40.0% |
| AAGCTAGCCCATAACCAAGA+GGG | - | chr5.1:54315322-54315341 | None:intergenic | 45.0% | |
| AGACTTAGAGCAGATCCACA+TGG | + | chr5.1:54312652-54312671 | MS.gene43773:CDS | 45.0% | |
| AGGTCTGCAAAGATCCTAGA+TGG | + | chr5.1:54312301-54312320 | MS.gene43773:intron | 45.0% | |
| ATAGGAGGAGAGGAGTCTTA+AGG | - | chr5.1:54314261-54314280 | None:intergenic | 45.0% | |
| ATCTGGAAGACCTTTGGTCT+TGG | + | chr5.1:54315106-54315125 | MS.gene43773:CDS | 45.0% | |
| CAGCTTGATCAACCTGTTGA+AGG | + | chr5.1:54315269-54315288 | MS.gene43773:CDS | 45.0% | |
| CCATGAGAAACTTGGGAACA+AGG | + | chr5.1:54313954-54313973 | MS.gene43773:intron | 45.0% | |
| CCCATAACCAAGAGGGAATA+AGG | - | chr5.1:54315315-54315334 | None:intergenic | 45.0% | |
| CCCTTATTCCCTCTTGGTTA+TGG | + | chr5.1:54315311-54315330 | MS.gene43773:CDS | 45.0% | |
| CCTCCAGAAAATCATCCAAG+GGG | + | chr5.1:54312405-54312424 | MS.gene43773:CDS | 45.0% | |
| CCTTGTTCCCAAGTTTCTCA+TGG | - | chr5.1:54313957-54313976 | None:intergenic | 45.0% | |
| GATATCGGGTATCAATGTGG+AGG | + | chr5.1:54314569-54314588 | MS.gene43773:CDS | 45.0% | |
| GATTGGGCTGATATGGTTGA+CGG | + | chr5.1:54311728-54311747 | MS.gene43773:CDS | 45.0% | |
| GCATCATCAATCCTGGCTAT+TGG | - | chr5.1:54313366-54313385 | None:intergenic | 45.0% | |
| GGCTTCACCAATAGCAACAA+TGG | - | chr5.1:54314979-54314998 | None:intergenic | 45.0% | |
| GGTCTGCAAAGATCCTAGAT+GGG | + | chr5.1:54312302-54312321 | MS.gene43773:intron | 45.0% | |
| GTCATCTGATTGGGCTGATA+TGG | + | chr5.1:54311721-54311740 | MS.gene43773:CDS | 45.0% | |
| GTCTCATATTCCAGCTGGAA+TGG | + | chr5.1:54312719-54312738 | MS.gene43773:CDS | 45.0% | |
| GTCTGCAAAGATCCTAGATG+GGG | + | chr5.1:54312303-54312322 | MS.gene43773:CDS | 45.0% | |
| TAAGCTAGCCCATAACCAAG+AGG | - | chr5.1:54315323-54315342 | None:intergenic | 45.0% | |
| TAGCGTTTGTATAGGAGGAG+AGG | - | chr5.1:54314271-54314290 | None:intergenic | 45.0% | |
| TCATAGCATCTTCCCCATCT+AGG | - | chr5.1:54312318-54312337 | None:intergenic | 45.0% | |
| TCCAGCAACAAGGATTCTCT+TGG | - | chr5.1:54314537-54314556 | None:intergenic | 45.0% | |
| TCGTGAACATATGCAGGTGA+TGG | + | chr5.1:54313278-54313297 | MS.gene43773:intron | 45.0% | |
| TCTAGTGGCCAGATCACAAT+TGG | + | chr5.1:54314614-54314633 | MS.gene43773:CDS | 45.0% | |
| TGAAGCAGTTCGAAAGTCCT+TGG | + | chr5.1:54314454-54314473 | MS.gene43773:CDS | 45.0% | |
| TGGAATGGAGTCAAACTCCA+TGG | + | chr5.1:54312734-54312753 | MS.gene43773:CDS | 45.0% | |
| TTCGGGGATCATGACTTCAA+GGG | + | chr5.1:54315212-54315231 | MS.gene43773:CDS | 45.0% | |
| ! | GACATCTCTAGTTCAATCGG+GGG | + | chr5.1:54313335-54313354 | MS.gene43773:CDS | 45.0% |
| ! | GCCTGTGCTAGACATTTTGT+TGG | + | chr5.1:54312575-54312594 | MS.gene43773:CDS | 45.0% |
| ! | GGAGATGGAGGTACAGAAAA+AGG | + | chr5.1:54312596-54312615 | MS.gene43773:CDS | 45.0% |
| ! | TAGCCCCTTGGATGATTTTC+TGG | - | chr5.1:54312411-54312430 | None:intergenic | 45.0% |
| ! | TTGCCTGGTAGTGAAGGAAA+TGG | + | chr5.1:54315173-54315192 | MS.gene43773:CDS | 45.0% |
| AAATGCACATGACCCCTCAC+AGG | - | chr5.1:54312020-54312039 | None:intergenic | 50.0% | |
| ACACAAACCTAGTTGCTCCG+AGG | - | chr5.1:54311868-54311887 | None:intergenic | 50.0% | |
| AGAAGCTGGCGCTTGAATCA+CGG | + | chr5.1:54311756-54311775 | MS.gene43773:CDS | 50.0% | |
| CAACCCGATAATCTCTTCGG+TGG | - | chr5.1:54313667-54313686 | None:intergenic | 50.0% | |
| CAGCATGAGTTCCAGCAACA+AGG | - | chr5.1:54314547-54314566 | None:intergenic | 50.0% | |
| CTCAACGGCATCATCAATCC+TGG | - | chr5.1:54313373-54313392 | None:intergenic | 50.0% | |
| CTTCGGGGATCATGACTTCA+AGG | + | chr5.1:54315211-54315230 | MS.gene43773:CDS | 50.0% | |
| GAGTTTGACTCCATTCCAGC+TGG | - | chr5.1:54312732-54312751 | None:intergenic | 50.0% | |
| GATGACCCCTTATTCCCTCT+TGG | + | chr5.1:54315305-54315324 | MS.gene43773:CDS | 50.0% | |
| GATGCTGCTAAGGATGCTGT+GGG | + | chr5.1:54314882-54314901 | MS.gene43773:CDS | 50.0% | |
| GCCAAGAGAATCCTTGTTGC+TGG | + | chr5.1:54314533-54314552 | MS.gene43773:CDS | 50.0% | |
| TAGAAGCTCTTGTTGCGGCA+TGG | + | chr5.1:54315150-54315169 | MS.gene43773:CDS | 50.0% | |
| TCACCTCCACACTCAGCATA+GGG | - | chr5.1:54315002-54315021 | None:intergenic | 50.0% | |
| TCGGGTATCAATGTGGAGGA+TGG | + | chr5.1:54314573-54314592 | MS.gene43773:CDS | 50.0% | |
| ! | CCCCTTGGATGATTTTCTGG+AGG | - | chr5.1:54312408-54312427 | None:intergenic | 50.0% |
| ! | GCTGGATACTGTTGGTTGCA+AGG | + | chr5.1:54313455-54313474 | MS.gene43773:CDS | 50.0% |
| ! | GGTTGACGGTTTTCAGAAGC+TGG | + | chr5.1:54311742-54311761 | MS.gene43773:CDS | 50.0% |
| ! | TTTCCTCACAACGTTGGCCT+CGG | + | chr5.1:54311848-54311867 | MS.gene43773:CDS | 50.0% |
| !! | GGATTGATGATGCCGTTGAG+CGG | + | chr5.1:54313373-54313392 | MS.gene43773:CDS | 50.0% |
| AATCCACATACGGGGCCATG+TGG | - | chr5.1:54312670-54312689 | None:intergenic | 55.0% | |
| ACCTCCACACTCAGCATAGG+GGG | - | chr5.1:54315000-54315019 | None:intergenic | 55.0% | |
| CACCTCCACACTCAGCATAG+GGG | - | chr5.1:54315001-54315020 | None:intergenic | 55.0% | |
| CCTACCTCCCAGCCACAAAT+GGG | - | chr5.1:54312434-54312453 | None:intergenic | 55.0% | |
| CTGGCGCTTGAATCACGGTT+AGG | + | chr5.1:54311761-54311780 | MS.gene43773:CDS | 55.0% | |
| GGATGCTGCTAAGGATGCTG+TGG | + | chr5.1:54314881-54314900 | MS.gene43773:CDS | 55.0% | |
| GTCACCTCCACACTCAGCAT+AGG | - | chr5.1:54315003-54315022 | None:intergenic | 55.0% | |
| TCCAAGGGGCTACCCATTTG+TGG | + | chr5.1:54312419-54312438 | MS.gene43773:CDS | 55.0% | |
| TGCTAAGGATGCTGTGGGAC+AGG | + | chr5.1:54314887-54314906 | MS.gene43773:CDS | 55.0% | |
| ! | CGAGCTTCAACCGGTTCAGA+GGG | - | chr5.1:54311438-54311457 | None:intergenic | 55.0% |
| ! | GCATGGTTGCCTGGTAGTGA+AGG | + | chr5.1:54315167-54315186 | MS.gene43773:CDS | 55.0% |
| AGGGGCTACCCATTTGTGGC+TGG | + | chr5.1:54312423-54312442 | MS.gene43773:CDS | 60.0% | |
| CCCATTTGTGGCTGGGAGGT+AGG | + | chr5.1:54312431-54312450 | MS.gene43773:intron | 60.0% | |
| CTTGTTGCGGCATGGTTGCC+TGG | + | chr5.1:54315158-54315177 | MS.gene43773:CDS | 60.0% | |
| GAAGCCCCCTATGCTGAGTG+TGG | + | chr5.1:54314993-54315012 | MS.gene43773:CDS | 60.0% | |
| GATCCACATGGCCCCGTATG+TGG | + | chr5.1:54312664-54312683 | MS.gene43773:CDS | 60.0% | |
| GCCACAAATGGGTAGCCCCT+TGG | - | chr5.1:54312423-54312442 | None:intergenic | 60.0% | |
| GCCTACCTCCCAGCCACAAA+TGG | - | chr5.1:54312435-54312454 | None:intergenic | 60.0% | |
| GCTACCCATTTGTGGCTGGG+AGG | + | chr5.1:54312427-54312446 | MS.gene43773:CDS | 60.0% | |
| GGGGCTACCCATTTGTGGCT+GGG | + | chr5.1:54312424-54312443 | MS.gene43773:CDS | 60.0% | |
| TGGCTGGGAGGTAGGCAGAT+AGG | + | chr5.1:54312439-54312458 | MS.gene43773:intron | 60.0% | |
| ! | ACGTTGGCCTCGGAGCAACT+AGG | + | chr5.1:54311858-54311877 | MS.gene43773:CDS | 60.0% |
| ! | GCGAGCTTCAACCGGTTCAG+AGG | - | chr5.1:54311439-54311458 | None:intergenic | 60.0% |
| !! | CGGGGGAAGTACCAATAGCC+AGG | + | chr5.1:54313352-54313371 | MS.gene43773:CDS | 60.0% |
| GCCCCCTATGCTGAGTGTGG+AGG | + | chr5.1:54314996-54315015 | MS.gene43773:CDS | 65.0% | |
| GCTCCGAGGCCAACGTTGTG+AGG | - | chr5.1:54311854-54311873 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 54311414 | 54315367 | 54311414 | ID=MS.gene43773 |
| chr5.1 | mRNA | 54311414 | 54315367 | 54311414 | ID=MS.gene43773.t1;Parent=MS.gene43773 |
| chr5.1 | exon | 54311414 | 54311564 | 54311414 | ID=MS.gene43773.t1.exon1;Parent=MS.gene43773.t1 |
| chr5.1 | CDS | 54311414 | 54311564 | 54311414 | ID=cds.MS.gene43773.t1;Parent=MS.gene43773.t1 |
| chr5.1 | exon | 54311672 | 54311879 | 54311672 | ID=MS.gene43773.t1.exon2;Parent=MS.gene43773.t1 |
| chr5.1 | CDS | 54311672 | 54311879 | 54311672 | ID=cds.MS.gene43773.t1;Parent=MS.gene43773.t1 |
| chr5.1 | exon | 54312093 | 54312183 | 54312093 | ID=MS.gene43773.t1.exon3;Parent=MS.gene43773.t1 |
| chr5.1 | CDS | 54312093 | 54312183 | 54312093 | ID=cds.MS.gene43773.t1;Parent=MS.gene43773.t1 |
| chr5.1 | exon | 54312303 | 54312448 | 54312303 | ID=MS.gene43773.t1.exon4;Parent=MS.gene43773.t1 |
| chr5.1 | CDS | 54312303 | 54312448 | 54312303 | ID=cds.MS.gene43773.t1;Parent=MS.gene43773.t1 |
| chr5.1 | exon | 54312562 | 54312805 | 54312562 | ID=MS.gene43773.t1.exon5;Parent=MS.gene43773.t1 |
| chr5.1 | CDS | 54312562 | 54312805 | 54312562 | ID=cds.MS.gene43773.t1;Parent=MS.gene43773.t1 |
| chr5.1 | exon | 54313107 | 54313211 | 54313107 | ID=MS.gene43773.t1.exon6;Parent=MS.gene43773.t1 |
| chr5.1 | CDS | 54313107 | 54313211 | 54313107 | ID=cds.MS.gene43773.t1;Parent=MS.gene43773.t1 |
| chr5.1 | exon | 54313294 | 54313476 | 54313294 | ID=MS.gene43773.t1.exon7;Parent=MS.gene43773.t1 |
| chr5.1 | CDS | 54313294 | 54313476 | 54313294 | ID=cds.MS.gene43773.t1;Parent=MS.gene43773.t1 |
| chr5.1 | exon | 54314434 | 54314635 | 54314434 | ID=MS.gene43773.t1.exon8;Parent=MS.gene43773.t1 |
| chr5.1 | CDS | 54314434 | 54314635 | 54314434 | ID=cds.MS.gene43773.t1;Parent=MS.gene43773.t1 |
| chr5.1 | exon | 54314868 | 54315367 | 54314868 | ID=MS.gene43773.t1.exon9;Parent=MS.gene43773.t1 |
| chr5.1 | CDS | 54314868 | 54315367 | 54314868 | ID=cds.MS.gene43773.t1;Parent=MS.gene43773.t1 |
| Gene Sequence |
| Protein sequence |
