AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene05603

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05603.t1 MTR_3g462820 96.849 603 19 0 1 603 18 620 0.0 1211
MS.gene05603.t1 MTR_5g069800 73.833 600 155 2 1 598 1 600 0.0 938
MS.gene05603.t1 MTR_5g069740 73.333 600 146 3 1 598 1 588 0.0 914
MS.gene05603.t1 MTR_6g028090 58.725 596 243 3 5 599 28 621 0.0 731
MS.gene05603.t1 MTR_6g028100 58.319 595 245 3 5 598 28 620 0.0 721
MS.gene05603.t1 MTR_6g028120 58.151 595 246 3 5 598 9 601 0.0 714
MS.gene05603.t1 MTR_6g028110 57.815 595 248 3 5 598 29 621 0.0 714
MS.gene05603.t1 MTR_6g028110 57.815 595 248 3 5 598 29 621 0.0 713
MS.gene05603.t1 MTR_3g079750 57.647 595 249 3 5 598 28 620 0.0 712
MS.gene05603.t1 MTR_2g030000 56.807 595 254 3 5 598 30 622 0.0 707
MS.gene05603.t1 MTR_7g086030 57.143 595 252 3 5 598 4 596 0.0 707
MS.gene05603.t1 MTR_7g086030 57.143 595 252 3 5 598 29 621 0.0 706
MS.gene05603.t1 MTR_7g086010 56.532 444 181 2 5 438 29 470 0.0 520
MS.gene05603.t1 MTR_3g074060 26.678 611 340 23 5 572 44 589 2.01e-40 157
MS.gene05603.t1 MTR_5g062320 26.202 603 353 22 5 572 48 593 3.89e-39 154
MS.gene05603.t1 MTR_5g062650 27.167 600 354 22 5 572 50 598 5.70e-39 153
MS.gene05603.t1 MTR_5g062430 26.534 603 351 22 5 572 50 595 6.84e-39 153
MS.gene05603.t1 MTR_5g062370 26.036 603 354 23 5 572 50 595 8.35e-39 152
MS.gene05603.t1 MTR_7g109390 26.087 644 356 28 12 602 49 625 3.63e-38 150
MS.gene05603.t1 MTR_5g062370 25.632 593 349 23 5 562 50 585 5.36e-35 140
MS.gene05603.t1 MTR_4g094285 25.166 604 352 23 5 572 54 593 3.48e-34 139
MS.gene05603.t1 MTR_1g087240 24.691 648 363 28 11 602 43 621 2.19e-33 136
MS.gene05603.t1 MTR_2g034720 25.503 596 357 25 5 572 41 577 1.31e-31 130
MS.gene05603.t1 MTR_2g008240 26.080 602 335 26 12 572 62 594 2.10e-31 130
MS.gene05603.t1 MTR_5g030860 26.264 613 343 29 5 572 42 590 2.19e-29 124
MS.gene05603.t1 MTR_1g106860 25.128 585 364 22 13 572 46 581 1.35e-25 112
MS.gene05603.t1 MTR_5g069850 70.690 58 17 0 528 585 1 58 7.17e-24 95.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05603.t1 AT3G47000 72.120 599 163 3 3 599 8 604 0.0 928
MS.gene05603.t1 AT3G47040 71.452 599 169 2 3 600 8 605 0.0 922
MS.gene05603.t1 AT3G47040 68.590 624 169 3 3 600 8 630 0.0 908
MS.gene05603.t1 AT3G47050 71.357 597 167 3 4 599 9 602 0.0 892
MS.gene05603.t1 AT3G47010 69.128 596 182 2 4 598 10 604 0.0 889
MS.gene05603.t1 AT3G47010 68.960 596 182 3 4 598 10 603 0.0 882
MS.gene05603.t1 AT3G47040 66.456 632 177 5 3 600 8 638 0.0 875
MS.gene05603.t1 AT3G47000 74.208 442 114 0 3 444 8 449 0.0 721
MS.gene05603.t1 AT5G04885 57.215 596 251 4 4 598 46 638 0.0 714
MS.gene05603.t1 AT5G04885 57.215 596 251 4 4 598 29 621 0.0 713
MS.gene05603.t1 AT5G04885 57.215 596 251 4 4 598 29 621 0.0 713
MS.gene05603.t1 AT3G47040 73.529 442 117 0 3 444 8 449 0.0 709
MS.gene05603.t1 AT3G47010 71.202 441 127 0 4 444 10 450 0.0 688
MS.gene05603.t1 AT5G20950 56.975 595 252 4 5 598 104 695 0.0 678
MS.gene05603.t1 AT5G20950 56.975 595 252 4 5 598 26 617 0.0 677
MS.gene05603.t1 AT5G20950 56.975 595 252 4 5 598 26 617 0.0 677
MS.gene05603.t1 AT3G47000 71.096 429 120 3 173 599 1 427 0.0 655
MS.gene05603.t1 AT5G20940 55.294 595 260 4 5 598 32 621 0.0 651
MS.gene05603.t1 AT3G47010 67.447 427 136 3 173 598 1 425 0.0 619
MS.gene05603.t1 AT3G47050 72.849 372 101 0 4 375 9 380 0.0 586
MS.gene05603.t1 AT3G62710 48.166 627 276 14 5 598 38 648 0.0 563
MS.gene05603.t1 AT5G49360 25.237 634 374 25 9 600 53 628 8.18e-35 140
MS.gene05603.t1 AT3G19620 24.844 640 369 27 13 600 49 628 3.89e-33 135
MS.gene05603.t1 AT1G02640 26.221 614 319 27 11 572 50 581 8.06e-33 134
MS.gene05603.t1 AT5G64570 25.790 601 337 25 12 572 66 597 6.33e-32 132
MS.gene05603.t1 AT5G10560 26.580 538 331 21 85 572 78 601 3.06e-31 130
MS.gene05603.t1 AT5G09730 25.366 615 336 26 5 572 49 587 3.31e-29 123
MS.gene05603.t1 AT1G78060 25.378 595 356 24 11 572 44 583 6.64e-29 122
MS.gene05603.t1 AT5G64570 25.082 610 348 25 12 581 66 606 1.89e-28 120
MS.gene05603.t1 AT5G64570 26.840 462 290 21 134 572 3 439 3.04e-25 110

Find 151 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAGAAAAGCTAGGCTTTA+AGG 0.107427 3.2:-53746814 MS.gene05603:intron
CCTTTGTTTCCTCTTGGTTT+TGG 0.130723 3.2:-53745206 MS.gene05603:CDS
AGGATGACTTCCATCGTTTC+TGG 0.194101 3.2:-53747251 MS.gene05603:CDS
CCAGGGAGTTTCAACCATTA+TGG 0.249679 3.2:-53746901 MS.gene05603:CDS
AGCAAAGATCTGTCACTTAA+TGG 0.265440 3.2:+53746322 None:intergenic
ACATTGGTTATTCTGATATC+TGG 0.273731 3.2:-53745425 MS.gene05603:CDS
GCTGATTTGGTTAGAAGAAT+TGG 0.279268 3.2:-53747725 MS.gene05603:CDS
TGAGAAATCCTTACGTTCTA+TGG 0.290038 3.2:+53745565 None:intergenic
TAGCAACAGTGCGTTCAATT+TGG 0.313170 3.2:+53749124 None:intergenic
TTGACCTCTTTAATTGAATC+AGG 0.314382 3.2:-53746424 MS.gene05603:CDS
AGACTTCGGTTAAAAGAAAA+TGG 0.320749 3.2:+53746838 None:intergenic
TTTCTATAGAGATGCTGATT+TGG 0.330050 3.2:-53747738 MS.gene05603:intron
CTTGGGATACCTCTCATATA+TGG 0.334109 3.2:-53747929 MS.gene05603:CDS
ACGAGCTTCAATGGGTTCAT+TGG 0.350130 3.2:+53749200 None:intergenic
GTCATCAGATTGGGCTGATA+TGG 0.359012 3.2:-53747987 MS.gene05603:CDS
CATGGTAATAACAGTGTCTA+TGG 0.375656 3.2:-53747893 MS.gene05603:CDS
TGGGAAATGCAGTTTAAATA+AGG 0.377290 3.2:+53746921 None:intergenic
AGCTCCTTATGCTGAGTCAT+TGG 0.386870 3.2:-53745519 MS.gene05603:CDS
CGAGCTTCAATGGGTTCATT+GGG 0.388791 3.2:+53749201 None:intergenic
GGAATCACAGATGTAATCTT+TGG 0.389084 3.2:-53745320 MS.gene05603:CDS
GCTAAGAGAATTCTTGTTAC+CGG 0.389610 3.2:-53746100 MS.gene05603:CDS
TTTCCGCACAATGTTGGCCT+TGG 0.390287 3.2:-53747860 MS.gene05603:CDS
CTTGTTGCCGCTTGGTTGCC+AGG 0.393551 3.2:-53745356 MS.gene05603:CDS
GTCCTTGATACGAGCTTCAA+TGG 0.394933 3.2:+53749191 None:intergenic
TGTGAACCTTTGTTTCCTCT+TGG 0.400222 3.2:-53745212 MS.gene05603:CDS
CGCAGGTGATGGTGGCTGTC+AGG 0.400858 3.2:-53746468 MS.gene05603:intron
GGAACACATGCTGATAATCT+TGG 0.401471 3.2:-53746079 MS.gene05603:CDS
ATAGGAAGCATACTAAGTTC+TGG 0.403935 3.2:-53748037 MS.gene05603:intron
GATGACAGTGCATTCTCAAA+TGG 0.407895 3.2:+53748004 None:intergenic
CTCTTAGCATTCTTGTTCAA+TGG 0.408954 3.2:+53746115 None:intergenic
GCCTACCTTCCAGCCACAAA+AGG 0.425345 3.2:+53747188 None:intergenic
TTCTTGTTCAATGGAAGAAA+AGG 0.426285 3.2:+53746124 None:intergenic
TATGGAATTGATGCAGTTCA+TGG 0.433577 3.2:-53747911 MS.gene05603:CDS
TTCACCTGATTCAATTAAAG+AGG 0.444760 3.2:+53746420 None:intergenic
ATCTCCTCTGCCGTCAATGC+TGG 0.456108 3.2:-53746578 MS.gene05603:CDS
AGAATGCACTGTCATCAGAT+TGG 0.456347 3.2:-53747997 MS.gene05603:CDS
GCGTCCTATACTAGCTGGAA+TGG 0.461450 3.2:-53746879 MS.gene05603:CDS
GATTGGGCTGATATGGTAGA+TGG 0.465157 3.2:-53747980 MS.gene05603:CDS
TAATATCAGTTCCACGGAAA+GGG 0.465753 3.2:+53745474 None:intergenic
AGCCTCACGGATCAGATTAT+CGG 0.466355 3.2:-53746607 MS.gene05603:CDS
GCATCATCGATTCTGCTCAT+TGG 0.472050 3.2:+53746394 None:intergenic
GCTCCTTATGCTGAGTCATT+GGG 0.476582 3.2:-53745518 MS.gene05603:CDS
ATGACAGTGCATTCTCAAAT+GGG 0.482178 3.2:+53748005 None:intergenic
TTGGATTTCAATGTGGAGGT+TGG 0.482406 3.2:-53746060 MS.gene05603:CDS
TTATTTAAACTGCATTTCCC+AGG 0.482848 3.2:-53746919 MS.gene05603:CDS
CGTTCTATGGTGTCTTGTGA+TGG 0.483155 3.2:+53745578 None:intergenic
ACTATATTTCCGCACAATGT+TGG 0.491225 3.2:-53747866 MS.gene05603:CDS
CATGTCAATTCCAGCATTGA+CGG 0.495441 3.2:+53746568 None:intergenic
CCATAATGGTTGAAACTCCC+TGG 0.496128 3.2:+53746901 None:intergenic
TCGCCCAATGACTCAGCATA+AGG 0.499707 3.2:+53745515 None:intergenic
TTGTGATTTCCGACTGGGAG+GGG 0.500018 3.2:-53746646 MS.gene05603:CDS
TGCCGATAAAATTCCAACAT+TGG 0.501721 3.2:-53745441 MS.gene05603:CDS
ATGACTCTCAACGAGAAGAT+TGG 0.501810 3.2:-53749156 MS.gene05603:CDS
GATATCAGAATAACCAATGT+TGG 0.502653 3.2:+53745428 None:intergenic
TTGAGAGTAAAGTTTGCTGC+TGG 0.502814 3.2:-53746358 MS.gene05603:CDS
TCCTTGATACGAGCTTCAAT+GGG 0.510901 3.2:+53749192 None:intergenic
ACGCTTCGAAACCAAGTGAC+TGG 0.511251 3.2:+53745272 None:intergenic
CGCTTCGAAACCAAGTGACT+GGG 0.512279 3.2:+53745273 None:intergenic
TTTGTGATTTCCGACTGGGA+GGG 0.512380 3.2:-53746647 MS.gene05603:CDS
GCTAGTATAGGACGCCATAA+TGG 0.513858 3.2:+53746887 None:intergenic
GCGCCCATTCCAGCTAGTAT+AGG 0.516093 3.2:+53746875 None:intergenic
GCTAGATACAGTTGGTTGCA+AGG 0.521815 3.2:-53746302 MS.gene05603:intron
GGAGTTGACCTTTGAAGTCA+TGG 0.522741 3.2:+53745294 None:intergenic
TTATGGCGTCCTATACTAGC+TGG 0.523575 3.2:-53746884 MS.gene05603:CDS
ATTCCATCTCCTTCACTACC+TGG 0.526085 3.2:+53745338 None:intergenic
ACCCATTGAAGCTCGTATCA+AGG 0.527158 3.2:-53749193 MS.gene05603:CDS
GGAAGCAGTTCGAAAGTCGT+TGG 0.527661 3.2:-53746179 MS.gene05603:CDS
AAGGTCAACTCCCAGTCACT+TGG 0.528725 3.2:-53745283 MS.gene05603:CDS
TCCATCACCAACAAAATGCT+TGG 0.529596 3.2:+53747016 None:intergenic
ATGTTGGCCTTGGAGCTACT+AGG 0.530559 3.2:-53747850 MS.gene05603:intron
TCCATCGTTTCTGGTTTGCA+AGG 0.531017 3.2:-53747242 MS.gene05603:CDS
CGTCCTATACTAGCTGGAAT+GGG 0.531709 3.2:-53746878 MS.gene05603:CDS
TAGATGCTCTTGTTGCCGCT+TGG 0.531832 3.2:-53745364 MS.gene05603:CDS
AAGATTATCAGCATGTGTTC+CGG 0.531909 3.2:+53746081 None:intergenic
ACTCATGAGGGTGTGAATGA+AGG 0.531917 3.2:-53746990 MS.gene05603:CDS
GAATGCACTGTCATCAGATT+GGG 0.533604 3.2:-53747996 MS.gene05603:CDS
CCTACCTTCCAGCCACAAAA+GGG 0.540848 3.2:+53747189 None:intergenic
GAGAGGTCTTTGATGACAGA+AGG 0.541378 3.2:+53749099 None:intergenic
AGCCGTCGGAGCTGAAACAC+AGG 0.542683 3.2:-53745618 MS.gene05603:CDS
AAACGATGGAAGTCATCCTT+CGG 0.544313 3.2:+53747255 None:intergenic
TCAGCTCTAGAGTCTAGACT+TGG 0.545525 3.2:-53747947 MS.gene05603:CDS
AGATCTTTGCTAGATACAGT+TGG 0.546954 3.2:-53746310 MS.gene05603:CDS
TTAAAAGAAAATGGTCGGAA+TGG 0.547072 3.2:+53746847 None:intergenic
ATACTAAGTTCTGGAGGCAG+TGG 0.556830 3.2:-53748028 MS.gene05603:CDS
GTCATCAAAGACCTCTCCAT+TGG 0.558866 3.2:-53749093 MS.gene05603:intron
TGAGAGTCATGCGTGAAAGA+AGG 0.559868 3.2:+53749169 None:intergenic
TCATTTGCGATTGTAGCTGT+TGG 0.559983 3.2:-53745545 MS.gene05603:CDS
ATAATATCAGTTCCACGGAA+AGG 0.560019 3.2:+53745473 None:intergenic
GTGGAGGTTGGACTAAAACT+TGG 0.560572 3.2:-53746048 MS.gene05603:CDS
TTCGGTTAAAAGAAAATGGT+CGG 0.560827 3.2:+53746842 None:intergenic
CATGCAGCAACACTATCACT+TGG 0.561072 3.2:+53745233 None:intergenic
ATCCGTGAGGCTTACAAAGT+CGG 0.568946 3.2:+53746618 None:intergenic
TAGAAGAATTGGAGCTGCAA+CGG 0.571117 3.2:-53747714 MS.gene05603:CDS
TATTTAAACTGCATTTCCCA+GGG 0.571347 3.2:-53746918 MS.gene05603:CDS
TTTGGTAGCCATGACTTCAA+AGG 0.572278 3.2:-53745302 MS.gene05603:CDS
ACAAGACACCATAGAACGTA+AGG 0.573519 3.2:-53745573 MS.gene05603:CDS
AACCTGTGTTTCAGCTCCGA+CGG 0.574303 3.2:+53745616 None:intergenic
AATATTTACGCAGGTGATGG+TGG 0.574548 3.2:-53746476 MS.gene05603:intron
TACAGGTATGCAAAGATCCT+AGG 0.574564 3.2:-53747322 MS.gene05603:intron
ATTCTTGTATAAGCAATCCA+TGG 0.574794 3.2:+53749224 None:intergenic
CAATGCCTTACCGCGACACA+AGG 0.575221 3.2:+53747650 None:intergenic
AATTCCAGCATTGACGGCAG+AGG 0.576589 3.2:+53746574 None:intergenic
GCGCTTGAAGTTAAAGCAAG+TGG 0.579980 3.2:-53747692 MS.gene05603:CDS
AAAACTTGGTATGGTGCTAG+TGG 0.580683 3.2:-53746034 MS.gene05603:CDS
GAAGTCTTGAAAGAAAAGCT+AGG 0.589447 3.2:-53746822 MS.gene05603:CDS
CATAATGGTTGAAACTCCCT+GGG 0.597849 3.2:+53746902 None:intergenic
AGAGGTCTTTGATGACAGAA+GGG 0.598226 3.2:+53749100 None:intergenic
AGCTTATAATATCAGTTCCA+CGG 0.600401 3.2:+53745468 None:intergenic
GAGCTCACAATCCCTTTCCG+TGG 0.602469 3.2:-53745485 MS.gene05603:CDS
GCTTGGTTGCCAGGTAGTGA+AGG 0.604762 3.2:-53745347 MS.gene05603:CDS
GGTTGGACTAAAACTTGGTA+TGG 0.605118 3.2:-53746043 MS.gene05603:CDS
AGCCGTGGCTCTAAAACTAA+CGG 0.616971 3.2:+53745398 None:intergenic
TAACTTTGCTCCTTGTGTCG+CGG 0.620843 3.2:-53747660 MS.gene05603:intron
GACCGACTTTGTAAGCCTCA+CGG 0.621243 3.2:-53746620 MS.gene05603:CDS
ACCTTGCAAACCAGAAACGA+TGG 0.622568 3.2:+53747241 None:intergenic
GGTATGCAAAGATCCTAGGT+GGG 0.622672 3.2:-53747318 MS.gene05603:CDS
TATCCATGTGTATGTCCTTG+TGG 0.625050 3.2:+53747212 None:intergenic
CCACCACAAGGACATACACA+TGG 0.625797 3.2:-53747215 MS.gene05603:CDS
CTTGGTATGGTGCTAGTGGG+AGG 0.629170 3.2:-53746030 MS.gene05603:CDS
AATCTTGGATTTCAATGTGG+AGG 0.629362 3.2:-53746064 MS.gene05603:CDS
TTGCCAGGTAGTGAAGGAGA+TGG 0.631782 3.2:-53745341 MS.gene05603:CDS
TCGGTCGAGCCCCTCCCAGT+CGG 0.633157 3.2:+53746637 None:intergenic
GGTGATGGAGGTACTCATGA+GGG 0.635280 3.2:-53747002 MS.gene05603:CDS
GCTCCAAGGCCAACATTGTG+CGG 0.636775 3.2:+53747857 None:intergenic
TCATAGCATCTTCCCCACCT+AGG 0.637527 3.2:+53747305 None:intergenic
AGGTATGCAAAGATCCTAGG+TGG 0.641153 3.2:-53747319 MS.gene05603:CDS
CAGCTCTAGAGTCTAGACTT+GGG 0.642393 3.2:-53747946 MS.gene05603:CDS
GCCACATAGAGATCTTGCAC+GGG 0.645982 3.2:-53746200 MS.gene05603:CDS
ATACTAACCTAGTAGCTCCA+AGG 0.653710 3.2:+53747843 None:intergenic
CCAAAACCAAGAGGAAACAA+AGG 0.654034 3.2:+53745206 None:intergenic
GATGCTGTTAAAGCAGCCGT+CGG 0.654191 3.2:-53745632 MS.gene05603:CDS
GCTAGTGGGAGGATCACAGT+TGG 0.655699 3.2:-53746019 MS.gene05603:intron
TGGTGATGGAGGTACTCATG+AGG 0.656934 3.2:-53747003 MS.gene05603:CDS
CCATGTGTATGTCCTTGTGG+TGG 0.658012 3.2:+53747215 None:intergenic
TTGCAAGGTCAGCCACCACA+AGG 0.658328 3.2:-53747227 MS.gene05603:CDS
AAACTTGGTATGGTGCTAGT+GGG 0.658815 3.2:-53746033 MS.gene05603:CDS
TCCCGTGCAAGATCTCTATG+TGG 0.660763 3.2:+53746199 None:intergenic
GTATGCAAAGATCCTAGGTG+GGG 0.661100 3.2:-53747317 MS.gene05603:CDS
AGCCACATAGAGATCTTGCA+CGG 0.661216 3.2:-53746201 MS.gene05603:CDS
GGAAGCATACTAAGTTCTGG+AGG 0.661489 3.2:-53748034 MS.gene05603:CDS
GATAATCTTGGATTTCAATG+TGG 0.662758 3.2:-53746067 MS.gene05603:CDS
CGTCAATGCTGGAATTGACA+TGG 0.663099 3.2:-53746567 MS.gene05603:intron
GCATCAATTCCATATATGAG+AGG 0.665889 3.2:+53747920 None:intergenic
TAGTTCAGCCCAAAACCAAG+AGG 0.669530 3.2:+53745197 None:intergenic
TGGGGTTAGTACCAATGGAG+AGG 0.673298 3.2:+53749082 None:intergenic
AAGACACTGAAATAGTCCGA+AGG 0.673498 3.2:-53747271 MS.gene05603:CDS
GAGGTCTTTGATGACAGAAG+GGG 0.677985 3.2:+53749101 None:intergenic
TCTATCTTTACCAAAAGCCG+TGG 0.689522 3.2:+53745383 None:intergenic
AGACTTAGAGAGAATACACA+TGG 0.711757 3.2:-53746946 MS.gene05603:CDS
TTCACTACCTGGCAACCAAG+CGG 0.717614 3.2:+53745349 None:intergenic
TACCGATAATCTGATCCGTG+AGG 0.739727 3.2:+53746605 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATAATTTTCATATACTTTA+GGG - chr3.2:53746227-53746246 MS.gene05603:intron 10.0%
!!! TTATAATTTTCATATACTTT+AGG - chr3.2:53746226-53746245 MS.gene05603:intron 10.0%
!! ACATATGTTTATTTATTGTA+AGG - chr3.2:53748464-53748483 MS.gene05603:intron 15.0%
!! AGCTAATATTACAAAAAATT+TGG + chr3.2:53747691-53747710 None:intergenic 15.0%
!! ATAACAATTTACTAAAATGA+TGG + chr3.2:53745414-53745433 None:intergenic 15.0%
!! ATAACGTATTTATGTAAAAA+TGG + chr3.2:53746028-53746047 None:intergenic 15.0%
!! ATTTATTTGGTTAAATATAC+AGG - chr3.2:53747067-53747086 MS.gene05603:intron 15.0%
!! GAGTAAATTCATATAATTTA+AGG - chr3.2:53746197-53746216 MS.gene05603:CDS 15.0%
!! TAAAAGATATCAATTGTTAT+CGG + chr3.2:53747314-53747333 None:intergenic 15.0%
!!! AAACTATAATTTGTAGTTTT+TGG - chr3.2:53745963-53745982 MS.gene05603:intron 15.0%
!!! ATCATTTTAGTAAATTGTTA+TGG - chr3.2:53745413-53745432 MS.gene05603:CDS 15.0%
!! AGAAAAAATACAGAATAAAC+AGG + chr3.2:53748682-53748701 None:intergenic 20.0%
!! ATAAAGGAAAGTGATTTATT+TGG - chr3.2:53747054-53747073 MS.gene05603:intron 20.0%
!! CACTCAAAAATTAAAATCAA+AGG + chr3.2:53745489-53745508 None:intergenic 20.0%
!!! TGATTATATCTGCATTTTAT+AGG - chr3.2:53746351-53746370 MS.gene05603:CDS 20.0%
!!! TTATTTTTTTGTGTTGCTTT+AGG - chr3.2:53746309-53746328 MS.gene05603:CDS 20.0%
!!! TTTATTGTATCTTTTGGTAT+AGG - chr3.2:53745766-53745785 MS.gene05603:intron 20.0%
!!! TTTGACTTTATTGTATCTTT+TGG - chr3.2:53745760-53745779 MS.gene05603:intron 20.0%
! AACATACCAAAACACATTTA+TGG - chr3.2:53748633-53748652 MS.gene05603:intron 25.0%
! ACACTATGATGAAAGATAAT+TGG + chr3.2:53747880-53747899 None:intergenic 25.0%
! ATCGTGTTTGGATTATTTAA+AGG - chr3.2:53745923-53745942 MS.gene05603:intron 25.0%
! ATCTCATTAGATTTGCATAA+CGG + chr3.2:53746598-53746617 None:intergenic 25.0%
! CTATTCAATAATATTTACGC+AGG - chr3.2:53747921-53747940 MS.gene05603:CDS 25.0%
! CTGCGTAAATATTATTGAAT+AGG + chr3.2:53747923-53747942 None:intergenic 25.0%
! TCTGAACAATAGTTAAAACA+AGG - chr3.2:53746969-53746988 MS.gene05603:CDS 25.0%
! TGAAGTACAATTTAAACACA+AGG + chr3.2:53747349-53747368 None:intergenic 25.0%
! TGGATTTAACAATAAATCGA+AGG + chr3.2:53746008-53746027 None:intergenic 25.0%
! TGTGTTTAAATTGTACTTCA+GGG - chr3.2:53747349-53747368 MS.gene05603:intron 25.0%
! TTGGTAAGCTATGATATTTA+TGG - chr3.2:53748406-53748425 MS.gene05603:intron 25.0%
! TTGTGTTTAAATTGTACTTC+AGG - chr3.2:53747348-53747367 MS.gene05603:intron 25.0%
! TTTCCTTTATTGTCTAGATA+CGG + chr3.2:53747044-53747063 None:intergenic 25.0%
!! AACCAATGTTGGAATTTTAT+CGG + chr3.2:53748970-53748989 None:intergenic 25.0%
!! AAGATTTTATGGAACATGTT+AGG - chr3.2:53745588-53745607 MS.gene05603:CDS 25.0%
!! AAGCTACATTTTATCACTTT+CGG + chr3.2:53748523-53748542 None:intergenic 25.0%
!! AGACTGTTTAGAAGATTTTA+TGG - chr3.2:53745577-53745596 MS.gene05603:CDS 25.0%
!! ATGATAATGCTGCTATAATT+TGG - chr3.2:53746616-53746635 MS.gene05603:CDS 25.0%
!! ATTTCACCATAAATGTGTTT+TGG + chr3.2:53748642-53748661 None:intergenic 25.0%
!! TAAGTATTGTTCAGTTTGTT+TGG - chr3.2:53745511-53745530 MS.gene05603:CDS 25.0%
!!! AACTTCTTTTTAGTGTATGT+TGG - chr3.2:53745847-53745866 MS.gene05603:intron 25.0%
!!! ACTTCTTTTTAGTGTATGTT+GGG - chr3.2:53745848-53745867 MS.gene05603:intron 25.0%
!!! AGAATTGATTTTATCGTGTT+TGG - chr3.2:53745911-53745930 MS.gene05603:intron 25.0%
!!! TGATTTTGTAAAACTGATTC+TGG + chr3.2:53746092-53746111 None:intergenic 25.0%
AAGGATTATCCCAGTATTAT+GGG + chr3.2:53746906-53746925 None:intergenic 30.0%
AATAATATTTACGCAGGTGA+TGG - chr3.2:53747927-53747946 MS.gene05603:CDS 30.0%
AGACTTCGGTTAAAAGAAAA+TGG + chr3.2:53747571-53747590 None:intergenic 30.0%
AGCTTATAATATCAGTTCCA+CGG + chr3.2:53748941-53748960 None:intergenic 30.0%
ATAATACTGGGATAATCCTT+CGG - chr3.2:53746906-53746925 MS.gene05603:CDS 30.0%
CAAGATTGTTGAACCTAAAA+TGG + chr3.2:53748754-53748773 None:intergenic 30.0%
CACATGCAAACAATTAATCA+GGG + chr3.2:53748164-53748183 None:intergenic 30.0%
GATAATCTTGGATTTCAATG+TGG - chr3.2:53748339-53748358 MS.gene05603:intron 30.0%
GATATCAGAATAACCAATGT+TGG + chr3.2:53748981-53749000 None:intergenic 30.0%
GTAAGGTATACAAGTTAATG+TGG + chr3.2:53748732-53748751 None:intergenic 30.0%
TATTTAAACTGCATTTCCCA+GGG - chr3.2:53747488-53747507 MS.gene05603:intron 30.0%
TCTAAGTCAAACTCTGTAAT+GGG + chr3.2:53745346-53745365 None:intergenic 30.0%
TGGGAAATGCAGTTTAAATA+AGG + chr3.2:53747488-53747507 None:intergenic 30.0%
TTAAAAGAAAATGGTCGGAA+TGG + chr3.2:53747562-53747581 None:intergenic 30.0%
TTATTTAAACTGCATTTCCC+AGG - chr3.2:53747487-53747506 MS.gene05603:intron 30.0%
TTCACCTGATTCAATTAAAG+AGG + chr3.2:53747989-53748008 None:intergenic 30.0%
TTCGGTTAAAAGAAAATGGT+CGG + chr3.2:53747567-53747586 None:intergenic 30.0%
TTCTAAGTCAAACTCTGTAA+TGG + chr3.2:53745347-53745366 None:intergenic 30.0%
TTCTTGTTCAATGGAAGAAA+AGG + chr3.2:53748285-53748304 None:intergenic 30.0%
TTGACCTCTTTAATTGAATC+AGG - chr3.2:53747982-53748001 MS.gene05603:CDS 30.0%
TTGTTGAACCTAAAATGGTA+AGG + chr3.2:53748749-53748768 None:intergenic 30.0%
TTTCCGTATCTAGACAATAA+AGG - chr3.2:53747038-53747057 MS.gene05603:CDS 30.0%
! ACATTGGTTATTCTGATATC+TGG - chr3.2:53748981-53749000 MS.gene05603:intron 30.0%
! CTTGTATACCTTACCATTTT+AGG - chr3.2:53748738-53748757 MS.gene05603:intron 30.0%
! TAGATTTTGTTCAGAAACCT+TGG - chr3.2:53748492-53748511 MS.gene05603:intron 30.0%
! TAGCTTTTCTTTCAAGACTT+CGG + chr3.2:53747585-53747604 None:intergenic 30.0%
! TTTCTATAGAGATGCTGATT+TGG - chr3.2:53746668-53746687 MS.gene05603:intron 30.0%
! TTTTTCTCCGTTGTTAAACA+TGG - chr3.2:53748695-53748714 MS.gene05603:intron 30.0%
!! CTGCAAAAGAAGTACTATTA+TGG + chr3.2:53748187-53748206 None:intergenic 30.0%
!!! CATTTTAGGTTCAACAATCT+TGG - chr3.2:53748752-53748771 MS.gene05603:intron 30.0%
!!! GCTGCTTTTACAATATTGTA+GGG - chr3.2:53746836-53746855 MS.gene05603:CDS 30.0%
!!! TCGTTGGTTTTGTTGAAAAA+TGG - chr3.2:53748243-53748262 MS.gene05603:intron 30.0%
!!! TGCTGCTTTTACAATATTGT+AGG - chr3.2:53746835-53746854 MS.gene05603:CDS 30.0%
!!! TTTTTTGTGTTGCTTTAGGT+TGG - chr3.2:53746313-53746332 MS.gene05603:CDS 30.0%
AAGAGCTTATGAAACACCTT+AGG - chr3.2:53745696-53745715 MS.gene05603:intron 35.0%
AAGATTATCAGCATGTGTTC+CGG + chr3.2:53748328-53748347 None:intergenic 35.0%
AAGATTGATTGCAGTGTGTT+TGG - chr3.2:53748437-53748456 MS.gene05603:intron 35.0%
AATCTTGGATTTCAATGTGG+AGG - chr3.2:53748342-53748361 MS.gene05603:intron 35.0%
ACGACAACCATGTTTAACAA+CGG + chr3.2:53748705-53748724 None:intergenic 35.0%
ACTATATTTCCGCACAATGT+TGG - chr3.2:53746540-53746559 MS.gene05603:intron 35.0%
AGACTTAGAGAGAATACACA+TGG - chr3.2:53747460-53747479 MS.gene05603:intron 35.0%
AGATCTTTGCTAGATACAGT+TGG - chr3.2:53748096-53748115 MS.gene05603:intron 35.0%
ATAATATCAGTTCCACGGAA+AGG + chr3.2:53748936-53748955 None:intergenic 35.0%
ATCACTTTATCCTGTACTAG+TGG - chr3.2:53746175-53746194 MS.gene05603:CDS 35.0%
ATGACAGTGCATTCTCAAAT+GGG + chr3.2:53746404-53746423 None:intergenic 35.0%
ATTATCCCAGTATTATGGGT+AGG + chr3.2:53746902-53746921 None:intergenic 35.0%
CAATAGTTAAAACAAGGACG+TGG - chr3.2:53746975-53746994 MS.gene05603:CDS 35.0%
CATCCAAGAAAGTCAAAAAC+TGG + chr3.2:53746643-53746662 None:intergenic 35.0%
CATGGTAATAACAGTGTCTA+TGG - chr3.2:53746513-53746532 MS.gene05603:intron 35.0%
CTAAGTCAAACTCTGTAATG+GGG + chr3.2:53745345-53745364 None:intergenic 35.0%
CTCTTAGCATTCTTGTTCAA+TGG + chr3.2:53748294-53748313 None:intergenic 35.0%
GAAAGAAAAGCTAGGCTTTA+AGG - chr3.2:53747592-53747611 MS.gene05603:intron 35.0%
GAAGGATTATCCCAGTATTA+TGG + chr3.2:53746907-53746926 None:intergenic 35.0%
GAAGTCTTGAAAGAAAAGCT+AGG - chr3.2:53747584-53747603 MS.gene05603:intron 35.0%
GCACATGCAAACAATTAATC+AGG + chr3.2:53748165-53748184 None:intergenic 35.0%
GCATCAATTCCATATATGAG+AGG + chr3.2:53746489-53746508 None:intergenic 35.0%
GCTAAGAGAATTCTTGTTAC+CGG - chr3.2:53748306-53748325 MS.gene05603:intron 35.0%
GGAATCACAGATGTAATCTT+TGG - chr3.2:53749086-53749105 MS.gene05603:intron 35.0%
GGATAAAGTGATACTTGTGA+AGG + chr3.2:53746167-53746186 None:intergenic 35.0%
GTTAGGACATGTTCATGAAT+TGG - chr3.2:53745605-53745624 MS.gene05603:CDS 35.0%
TAATACTGGGATAATCCTTC+GGG - chr3.2:53746907-53746926 MS.gene05603:CDS 35.0%
TAATATCAGTTCCACGGAAA+GGG + chr3.2:53748935-53748954 None:intergenic 35.0%
TATGGAATTGATGCAGTTCA+TGG - chr3.2:53746495-53746514 MS.gene05603:intron 35.0%
TGAATTTACTCCACTAGTAC+AGG + chr3.2:53746188-53746207 None:intergenic 35.0%
TGAGAAATCCTTACGTTCTA+TGG + chr3.2:53748844-53748863 None:intergenic 35.0%
TGATACTTGTGAAGGTTACT+AGG + chr3.2:53746159-53746178 None:intergenic 35.0%
TGCCGATAAAATTCCAACAT+TGG - chr3.2:53748965-53748984 MS.gene05603:intron 35.0%
TTATCCCAGTATTATGGGTA+GGG + chr3.2:53746901-53746920 None:intergenic 35.0%
! AGCAAAGATCTGTCACTTAA+TGG + chr3.2:53748087-53748106 None:intergenic 35.0%
! ATAGGAAGCATACTAAGTTC+TGG - chr3.2:53746369-53746388 MS.gene05603:CDS 35.0%
! GTTGGGTTTCAATTTTCGAA+TGG - chr3.2:53745865-53745884 MS.gene05603:intron 35.0%
! TACTTTAGGGACTAAGTAGA+AGG - chr3.2:53746240-53746259 MS.gene05603:intron 35.0%
!! CTTTGTTTCCTCTTGGTTTT+GGG - chr3.2:53749201-53749220 MS.gene05603:CDS 35.0%
!! GCTGATTTGGTTAGAAGAAT+TGG - chr3.2:53746681-53746700 MS.gene05603:intron 35.0%
!!! CAGTTTTTGACTTTCTTGGA+TGG - chr3.2:53746641-53746660 MS.gene05603:CDS 35.0%
AAACGATGGAAGTCATCCTT+CGG + chr3.2:53747154-53747173 None:intergenic 40.0%
AAGACACTGAAATAGTCCGA+AGG - chr3.2:53747135-53747154 MS.gene05603:intron 40.0%
AAGGTTACTAGGTGTGTGTT+TGG + chr3.2:53746148-53746167 None:intergenic 40.0%
AATACTGGGATAATCCTTCG+GGG - chr3.2:53746908-53746927 MS.gene05603:CDS 40.0%
ACAAGACACCATAGAACGTA+AGG - chr3.2:53748833-53748852 MS.gene05603:intron 40.0%
ACGCAGAAAGAGTTCTATGT+AGG + chr3.2:53746878-53746897 None:intergenic 40.0%
AGAATGCACTGTCATCAGAT+TGG - chr3.2:53746409-53746428 MS.gene05603:CDS 40.0%
ATACTAACCTAGTAGCTCCA+AGG + chr3.2:53746566-53746585 None:intergenic 40.0%
ATGACTCTCAACGAGAAGAT+TGG - chr3.2:53745250-53745269 MS.gene05603:CDS 40.0%
CAACTCATGAACATGTCCTA+AGG + chr3.2:53745715-53745734 None:intergenic 40.0%
CAGAAAGAGTTCTATGTAGG+AGG + chr3.2:53746875-53746894 None:intergenic 40.0%
CATAATGGTTGAAACTCCCT+GGG + chr3.2:53747507-53747526 None:intergenic 40.0%
CCAAAACCAAGAGGAAACAA+AGG + chr3.2:53749203-53749222 None:intergenic 40.0%
CTTGGGATACCTCTCATATA+TGG - chr3.2:53746477-53746496 MS.gene05603:intron 40.0%
GAATGCACTGTCATCAGATT+GGG - chr3.2:53746410-53746429 MS.gene05603:CDS 40.0%
GATGACAGTGCATTCTCAAA+TGG + chr3.2:53746405-53746424 None:intergenic 40.0%
GGAACACATGCTGATAATCT+TGG - chr3.2:53748327-53748346 MS.gene05603:intron 40.0%
GGTTGGACTAAAACTTGGTA+TGG - chr3.2:53748363-53748382 MS.gene05603:intron 40.0%
TACAGGTATGCAAAGATCCT+AGG - chr3.2:53747084-53747103 MS.gene05603:intron 40.0%
TAGAAGAATTGGAGCTGCAA+CGG - chr3.2:53746692-53746711 MS.gene05603:intron 40.0%
TAGCAACAGTGCGTTCAATT+TGG + chr3.2:53745285-53745304 None:intergenic 40.0%
TATCACTTTCGGTCAAACCA+AGG + chr3.2:53748512-53748531 None:intergenic 40.0%
TATCCATGTGTATGTCCTTG+TGG + chr3.2:53747197-53747216 None:intergenic 40.0%
TATTGACAATCGCTGCTGTA+GGG - chr3.2:53747735-53747754 MS.gene05603:intron 40.0%
TCATTTGCGATTGTAGCTGT+TGG - chr3.2:53748861-53748880 MS.gene05603:intron 40.0%
TCCATCACCAACAAAATGCT+TGG + chr3.2:53747393-53747412 None:intergenic 40.0%
TCCTTGATACGAGCTTCAAT+GGG + chr3.2:53745217-53745236 None:intergenic 40.0%
TCTATCTTTACCAAAAGCCG+TGG + chr3.2:53749026-53749045 None:intergenic 40.0%
TTATTGACAATCGCTGCTGT+AGG - chr3.2:53747734-53747753 MS.gene05603:intron 40.0%
TTGGATTTCAATGTGGAGGT+TGG - chr3.2:53748346-53748365 MS.gene05603:intron 40.0%
! AAAACTTGGTATGGTGCTAG+TGG - chr3.2:53748372-53748391 MS.gene05603:intron 40.0%
! AAACTTGGTATGGTGCTAGT+GGG - chr3.2:53748373-53748392 MS.gene05603:intron 40.0%
! AATATTTACGCAGGTGATGG+TGG - chr3.2:53747930-53747949 MS.gene05603:CDS 40.0%
! AGAGGTCTTTGATGACAGAA+GGG + chr3.2:53745309-53745328 None:intergenic 40.0%
! CATGTCAATTCCAGCATTGA+CGG + chr3.2:53747841-53747860 None:intergenic 40.0%
! TACACATGGATACCCTTTTG+TGG - chr3.2:53747205-53747224 MS.gene05603:CDS 40.0%
! TGTAATGGGGTTAGTACCAA+TGG + chr3.2:53745332-53745351 None:intergenic 40.0%
! TGTGAACCTTTGTTTCCTCT+TGG - chr3.2:53749194-53749213 MS.gene05603:CDS 40.0%
! TTTGGTAGCCATGACTTCAA+AGG - chr3.2:53749104-53749123 MS.gene05603:CDS 40.0%
!! CCTTTGTTTCCTCTTGGTTT+TGG - chr3.2:53749200-53749219 MS.gene05603:CDS 40.0%
!! TTGAGAGTAAAGTTTGCTGC+TGG - chr3.2:53748048-53748067 MS.gene05603:intron 40.0%
!!! AAGCATTTTGTTGGTGATGG+AGG - chr3.2:53747392-53747411 MS.gene05603:intron 40.0%
!!! GGACCAGTTTTTGACTTTCT+TGG - chr3.2:53746637-53746656 MS.gene05603:CDS 40.0%
ACCCATTGAAGCTCGTATCA+AGG - chr3.2:53745213-53745232 MS.gene05603:CDS 45.0%
ACCTTGCAAACCAGAAACGA+TGG + chr3.2:53747168-53747187 None:intergenic 45.0%
AGCCACATAGAGATCTTGCA+CGG - chr3.2:53748205-53748224 MS.gene05603:intron 45.0%
AGCCTCACGGATCAGATTAT+CGG - chr3.2:53747799-53747818 MS.gene05603:intron 45.0%
AGCTCCTTATGCTGAGTCAT+TGG - chr3.2:53748887-53748906 MS.gene05603:intron 45.0%
AGGATGACTTCCATCGTTTC+TGG - chr3.2:53747155-53747174 MS.gene05603:intron 45.0%
AGGTATGCAAAGATCCTAGG+TGG - chr3.2:53747087-53747106 MS.gene05603:intron 45.0%
ATCCGTGAGGCTTACAAAGT+CGG + chr3.2:53747791-53747810 None:intergenic 45.0%
ATTCCATCTCCTTCACTACC+TGG + chr3.2:53749071-53749090 None:intergenic 45.0%
CCAGGGAGTTTCAACCATTA+TGG - chr3.2:53747505-53747524 MS.gene05603:intron 45.0%
CCATAATGGTTGAAACTCCC+TGG + chr3.2:53747508-53747527 None:intergenic 45.0%
CGTCAATGCTGGAATTGACA+TGG - chr3.2:53747839-53747858 MS.gene05603:intron 45.0%
CGTCCTATACTAGCTGGAAT+GGG - chr3.2:53747528-53747547 MS.gene05603:intron 45.0%
CGTTCTATGGTGTCTTGTGA+TGG + chr3.2:53748831-53748850 None:intergenic 45.0%
GATTGGGCTGATATGGTAGA+TGG - chr3.2:53746426-53746445 MS.gene05603:CDS 45.0%
GCGCTTGAAGTTAAAGCAAG+TGG - chr3.2:53746714-53746733 MS.gene05603:intron 45.0%
GCTAGATACAGTTGGTTGCA+AGG - chr3.2:53748104-53748123 MS.gene05603:intron 45.0%
GCTAGTATAGGACGCCATAA+TGG + chr3.2:53747522-53747541 None:intergenic 45.0%
GCTCCTTATGCTGAGTCATT+GGG - chr3.2:53748888-53748907 MS.gene05603:intron 45.0%
GGTATGCAAAGATCCTAGGT+GGG - chr3.2:53747088-53747107 MS.gene05603:intron 45.0%
GTATGCAAAGATCCTAGGTG+GGG - chr3.2:53747089-53747108 MS.gene05603:intron 45.0%
GTCATCAAAGACCTCTCCAT+TGG - chr3.2:53745313-53745332 MS.gene05603:CDS 45.0%
GTCATCAGATTGGGCTGATA+TGG - chr3.2:53746419-53746438 MS.gene05603:CDS 45.0%
GTCCTTGATACGAGCTTCAA+TGG + chr3.2:53745218-53745237 None:intergenic 45.0%
GTGGAGGTTGGACTAAAACT+TGG - chr3.2:53748358-53748377 MS.gene05603:intron 45.0%
TAACTTTGCTCCTTGTGTCG+CGG - chr3.2:53746746-53746765 MS.gene05603:intron 45.0%
TACCGATAATCTGATCCGTG+AGG + chr3.2:53747804-53747823 None:intergenic 45.0%
TAGTTCAGCCCAAAACCAAG+AGG + chr3.2:53749212-53749231 None:intergenic 45.0%
TGAGAGTCATGCGTGAAAGA+AGG + chr3.2:53745240-53745259 None:intergenic 45.0%
TTATGGCGTCCTATACTAGC+TGG - chr3.2:53747522-53747541 MS.gene05603:intron 45.0%
TTTGTGATTTCCGACTGGGA+GGG - chr3.2:53747759-53747778 MS.gene05603:intron 45.0%
! ACGAGCTTCAATGGGTTCAT+TGG + chr3.2:53745209-53745228 None:intergenic 45.0%
! ACTCATGAGGGTGTGAATGA+AGG - chr3.2:53747416-53747435 MS.gene05603:intron 45.0%
! CGAGCTTCAATGGGTTCATT+GGG + chr3.2:53745208-53745227 None:intergenic 45.0%
! GAGAGGTCTTTGATGACAGA+AGG + chr3.2:53745310-53745329 None:intergenic 45.0%
! GAGGTCTTTGATGACAGAAG+GGG + chr3.2:53745308-53745327 None:intergenic 45.0%
! GCATGTGCCAAGCATTTTGT+TGG - chr3.2:53747383-53747402 MS.gene05603:intron 45.0%
! GGAAGCATACTAAGTTCTGG+AGG - chr3.2:53746372-53746391 MS.gene05603:CDS 45.0%
! TTTTGTGATTTCCGACTGGG+AGG - chr3.2:53747758-53747777 MS.gene05603:intron 45.0%
!! AGCCGTGGCTCTAAAACTAA+CGG + chr3.2:53749011-53749030 None:intergenic 45.0%
!! AGGGTTTTGTGATTTCCGAC+TGG - chr3.2:53747754-53747773 MS.gene05603:intron 45.0%
!! ATACTAAGTTCTGGAGGCAG+TGG - chr3.2:53746378-53746397 MS.gene05603:CDS 45.0%
!! CAGCTCTAGAGTCTAGACTT+GGG - chr3.2:53746460-53746479 MS.gene05603:CDS 45.0%
!! GCATCATCGATTCTGCTCAT+TGG + chr3.2:53748015-53748034 None:intergenic 45.0%
!! GCCAAGCATTTTGTTGGTGA+TGG - chr3.2:53747389-53747408 MS.gene05603:intron 45.0%
!! GGAGTTGACCTTTGAAGTCA+TGG + chr3.2:53749115-53749134 None:intergenic 45.0%
!! GGGTTTTGTGATTTCCGACT+GGG - chr3.2:53747755-53747774 MS.gene05603:intron 45.0%
!! TCAGCTCTAGAGTCTAGACT+TGG - chr3.2:53746459-53746478 MS.gene05603:CDS 45.0%
!! TCCATCGTTTCTGGTTTGCA+AGG - chr3.2:53747164-53747183 MS.gene05603:intron 45.0%
!!! AGTTTTAGAGCCACGGCTTT+TGG - chr3.2:53749013-53749032 MS.gene05603:intron 45.0%
!!! GACCGTTAGTTTTAGAGCCA+CGG - chr3.2:53749006-53749025 MS.gene05603:intron 45.0%
AACCTGTGTTTCAGCTCCGA+CGG + chr3.2:53748793-53748812 None:intergenic 50.0%
AAGGTCAACTCCCAGTCACT+TGG - chr3.2:53749123-53749142 MS.gene05603:CDS 50.0%
ACGCTTCGAAACCAAGTGAC+TGG + chr3.2:53749137-53749156 None:intergenic 50.0%
ATGATCTTTCCTGTCCCCGA+AGG + chr3.2:53746925-53746944 None:intergenic 50.0%
CCACCACAAGGACATACACA+TGG - chr3.2:53747191-53747210 MS.gene05603:intron 50.0%
CCATGTGTATGTCCTTGTGG+TGG + chr3.2:53747194-53747213 None:intergenic 50.0%
CCTACCTTCCAGCCACAAAA+GGG + chr3.2:53747220-53747239 None:intergenic 50.0%
CGCTTCGAAACCAAGTGACT+GGG + chr3.2:53749136-53749155 None:intergenic 50.0%
GATGCTGTTAAAGCAGCCGT+CGG - chr3.2:53748774-53748793 MS.gene05603:intron 50.0%
GCCACATAGAGATCTTGCAC+GGG - chr3.2:53748206-53748225 MS.gene05603:intron 50.0%
GCGTCCCTACCCATAATACT+GGG - chr3.2:53746894-53746913 MS.gene05603:CDS 50.0%
GCGTCCTATACTAGCTGGAA+TGG - chr3.2:53747527-53747546 MS.gene05603:intron 50.0%
GGAAGCAGTTCGAAAGTCGT+TGG - chr3.2:53748227-53748246 MS.gene05603:intron 50.0%
TAGATGCTCTTGTTGCCGCT+TGG - chr3.2:53749042-53749061 MS.gene05603:intron 50.0%
TCATAGCATCTTCCCCACCT+AGG + chr3.2:53747104-53747123 None:intergenic 50.0%
TCCCGTGCAAGATCTCTATG+TGG + chr3.2:53748210-53748229 None:intergenic 50.0%
TCGCCCAATGACTCAGCATA+AGG + chr3.2:53748894-53748913 None:intergenic 50.0%
TGCGTCCCTACCCATAATAC+TGG - chr3.2:53746893-53746912 MS.gene05603:CDS 50.0%
TTCACTACCTGGCAACCAAG+CGG + chr3.2:53749060-53749079 None:intergenic 50.0%
TTGCCAGGTAGTGAAGGAGA+TGG - chr3.2:53749065-53749084 MS.gene05603:intron 50.0%
TTGTGATTTCCGACTGGGAG+GGG - chr3.2:53747760-53747779 MS.gene05603:intron 50.0%
! CATGGATACCCTTTTGTGGC+TGG - chr3.2:53747209-53747228 MS.gene05603:CDS 50.0%
! GACCGACTTTGTAAGCCTCA+CGG - chr3.2:53747786-53747805 MS.gene05603:intron 50.0%
! GATACCCTTTTGTGGCTGGA+AGG - chr3.2:53747213-53747232 MS.gene05603:CDS 50.0%
! TGGGGTTAGTACCAATGGAG+AGG + chr3.2:53745327-53745346 None:intergenic 50.0%
! TTTCCGCACAATGTTGGCCT+TGG - chr3.2:53746546-53746565 MS.gene05603:intron 50.0%
!! AATTCCAGCATTGACGGCAG+AGG + chr3.2:53747835-53747854 None:intergenic 50.0%
!! ATGTTGGCCTTGGAGCTACT+AGG - chr3.2:53746556-53746575 MS.gene05603:intron 50.0%
!! GGTGATGGAGGTACTCATGA+GGG - chr3.2:53747404-53747423 MS.gene05603:intron 50.0%
!! TGGTGATGGAGGTACTCATG+AGG - chr3.2:53747403-53747422 MS.gene05603:intron 50.0%
ATCTCCTCTGCCGTCAATGC+TGG - chr3.2:53747828-53747847 MS.gene05603:intron 55.0%
CAATGCCTTACCGCGACACA+AGG + chr3.2:53746759-53746778 None:intergenic 55.0%
GAGCTCACAATCCCTTTCCG+TGG - chr3.2:53748921-53748940 MS.gene05603:intron 55.0%
GCCTACCTTCCAGCCACAAA+AGG + chr3.2:53747221-53747240 None:intergenic 55.0%
GCGCCCATTCCAGCTAGTAT+AGG + chr3.2:53747534-53747553 None:intergenic 55.0%
GCTAGTGGGAGGATCACAGT+TGG - chr3.2:53748387-53748406 MS.gene05603:intron 55.0%
GCTCCAAGGCCAACATTGTG+CGG + chr3.2:53746552-53746571 None:intergenic 55.0%
GCTTGGTTGCCAGGTAGTGA+AGG - chr3.2:53749059-53749078 MS.gene05603:intron 55.0%
TGGGATAATCCTTCGGGGAC+AGG - chr3.2:53746913-53746932 MS.gene05603:CDS 55.0%
TTGCAAGGTCAGCCACCACA+AGG - chr3.2:53747179-53747198 MS.gene05603:intron 55.0%
TTGCTCCTTGTGTCGCGGTA+AGG - chr3.2:53746751-53746770 MS.gene05603:intron 55.0%
! CCCTTTTGTGGCTGGAAGGT+AGG - chr3.2:53747217-53747236 MS.gene05603:CDS 55.0%
! CTTGGTATGGTGCTAGTGGG+AGG - chr3.2:53748376-53748395 MS.gene05603:intron 55.0%
AGCCGTCGGAGCTGAAACAC+AGG - chr3.2:53748788-53748807 MS.gene05603:intron 60.0%
! CTTGTTGCCGCTTGGTTGCC+AGG - chr3.2:53749050-53749069 MS.gene05603:intron 60.0%
!! CGCAGGTGATGGTGGCTGTC+AGG - chr3.2:53747938-53747957 MS.gene05603:CDS 65.0%
TCGGTCGAGCCCCTCCCAGT+CGG + chr3.2:53747772-53747791 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 53745184 53749244 53745184 ID=MS.gene05603
chr3.2 mRNA 53745184 53749244 53745184 ID=MS.gene05603.t1;Parent=MS.gene05603
chr3.2 exon 53749094 53749244 53749094 ID=MS.gene05603.t1.exon1;Parent=MS.gene05603.t1
chr3.2 CDS 53749094 53749244 53749094 ID=cds.MS.gene05603.t1;Parent=MS.gene05603.t1
chr3.2 exon 53747851 53748055 53747851 ID=MS.gene05603.t1.exon2;Parent=MS.gene05603.t1
chr3.2 CDS 53747851 53748055 53747851 ID=cds.MS.gene05603.t1;Parent=MS.gene05603.t1
chr3.2 exon 53747661 53747751 53747661 ID=MS.gene05603.t1.exon3;Parent=MS.gene05603.t1
chr3.2 CDS 53747661 53747751 53747661 ID=cds.MS.gene05603.t1;Parent=MS.gene05603.t1
chr3.2 exon 53747194 53747339 53747194 ID=MS.gene05603.t1.exon4;Parent=MS.gene05603.t1
chr3.2 CDS 53747194 53747339 53747194 ID=cds.MS.gene05603.t1;Parent=MS.gene05603.t1
chr3.2 exon 53746815 53747058 53746815 ID=MS.gene05603.t1.exon5;Parent=MS.gene05603.t1
chr3.2 CDS 53746815 53747058 53746815 ID=cds.MS.gene05603.t1;Parent=MS.gene05603.t1
chr3.2 exon 53746568 53746672 53746568 ID=MS.gene05603.t1.exon6;Parent=MS.gene05603.t1
chr3.2 CDS 53746568 53746672 53746568 ID=cds.MS.gene05603.t1;Parent=MS.gene05603.t1
chr3.2 exon 53746303 53746485 53746303 ID=MS.gene05603.t1.exon7;Parent=MS.gene05603.t1
chr3.2 CDS 53746303 53746485 53746303 ID=cds.MS.gene05603.t1;Parent=MS.gene05603.t1
chr3.2 exon 53746020 53746221 53746020 ID=MS.gene05603.t1.exon8;Parent=MS.gene05603.t1
chr3.2 CDS 53746020 53746221 53746020 ID=cds.MS.gene05603.t1;Parent=MS.gene05603.t1
chr3.2 exon 53745184 53745668 53745184 ID=MS.gene05603.t1.exon9;Parent=MS.gene05603.t1
chr3.2 CDS 53745184 53745668 53745184 ID=cds.MS.gene05603.t1;Parent=MS.gene05603.t1
Gene Sequence

>MS.gene05603

ATGGATTGCTTATACAAGAATCCCAATGAACCCATTGAAGCTCGTATCAAGGACCTTCTTTCACGCATGACTCTCAACGAGAAGATTGGTCAAATGATCCAAATTGAACGCACTGTTGCTACCCCTTCTGTCATCAAAGACCTCTCCATTGGTACTAACCCCATTACAGAGTTTGACTTAGAACTCAAAACTTTGATCATTTCTCTCTGTAATTTGTGTTTGATATGCCATCATTTTAGTAAATTGTTATGGAAGATGAAATTAATTTGAATGATCTTAATTGAGTCTGTCATAAAATATGACCTTTGATTTTAATTTTTGAGTGTGTAAGTATTGTTCAGTTTGTTTGGATTGATTTAGTTATTTGAACTTATCTACTGACATGCATTTGTGAGACTGTTTAGAAGATTTTATGGAACATGTTAGGACATGTTCATGAATTGGATTGATTGATTGATTTATTTATTTATTTGAACTTATTTATTTACATAAGCATTTGTGAGACTGTTTCGAAGAGCTTATGAAACACCTTAGGACATGTTCATGAGTTGTTGATTATAGCTTATATGAAAACAGTTTGACTTTATTGTATCTTTTGGTATAGGAATAAGTTATACATAAGCATTGTATGATAAGTGCTTAATTAAGTTGTTCATTCAAACAAACTTCTTTTTAGTGTATGTTGGGTTTCAATTTTCGAATGGTCAGAATTGATTCTAGATGTTGTAGAATTGATTTTATCGTGTTTGGATTATTTAAAGGAGAATTGATTCTACTTGAAACTATAATTTGTAGTTTTTGGCTTCTACAATTCATTTTAACCTTCGATTTATTGTTAAATCCATTTTTACATAAATACGTTATACATTCAAACATAAATCACTTTACATTCAACTCACTTTTATCCAGAATCAGTTTTACAAAATCAATTAATTCAAGATCAGATTATGTCACTAATGAACCAAACACACACCTAGTAACCTTCACAAGTATCACTTTATCCTGTACTAGTGGAGTAAATTCATATAATTTAAGGATCTACTTATAATTTTCATATACTTTAGGGACTAAGTAGAAGGAAAAATGTATTTTGAGCGACTAAATTGAGAGTTTATTTTTTATTTTTTATTTTTTTGTGTTGCTTTAGGTTGGACTTTGTTTGAATTTTGATTATATCTGCATTTTATAGGAAGCATACTAAGTTCTGGAGGCAGTGGCCCATTTGAGAATGCACTGTCATCAGATTGGGCTGATATGGTAGATGGCTATCAAAAATCAGCTCTAGAGTCTAGACTTGGGATACCTCTCATATATGGAATTGATGCAGTTCATGGTAATAACAGTGTCTATGGTGCTACTATATTTCCGCACAATGTTGGCCTTGGAGCTACTAGGTTAGTATTCAGCTTTTCCGTTATGCAAATCTAATGAGATGATAATGCTGCTATAATTTGGACCAGTTTTTGACTTTCTTGGATGGAATGTTTCTATAGAGATGCTGATTTGGTTAGAAGAATTGGAGCTGCAACGGCGCTTGAAGTTAAAGCAAGTGGAATTCACTATAACTTTGCTCCTTGTGTCGCGGTAAGGCATTGCAATCAACTAGTCATTGAATGCATGAATGAATTATGTCAGCAAACTACATATGCTATGCTGCTTTTACAATATTGTAGGGATTTAACTCTTGACCTCCTACATAGAACTCTTTCTGCGTCCCTACCCATAATACTGGGATAATCCTTCGGGGACAGGAAAGATCATTTCAGTCTTTAATTTTATATCAGTTCTGAACAATAGTTAAAACAAGGACGTGGTTGAATTTTTTTTATTTCTTTAATTTTTCTCTTAGTAAAATTTCCGTATCTAGACAATAAAGGAAAGTGATTTATTTGGTTAAATATACAGGTATGCAAAGATCCTAGGTGGGGAAGATGCTATGAGTGTTACAGTGAAGACACTGAAATAGTCCGAAGGATGACTTCCATCGTTTCTGGTTTGCAAGGTCAGCCACCACAAGGACATACACATGGATACCCTTTTGTGGCTGGAAGGTAGGCAAAAAACATTCATATAAAATTTAACACAAGATTTTAGTTTAAAATTATTGAAAAATTAACTATTTCTGTTCCGATAACAATTGATATCTTTTATCAGTATTTATACCTTGTGTTTAAATTGTACTTCAGGGAAAATGTTATTGCATGTGCCAAGCATTTTGTTGGTGATGGAGGTACTCATGAGGGTGTGAATGAAGGAGATACTATATTGTCTTATGAAGACTTAGAGAGAATACACATGGCACCTTATTTAAACTGCATTTCCCAGGGAGTTTCAACCATTATGGCGTCCTATACTAGCTGGAATGGGCGCAAACTCCATTCCGACCATTTTCTTTTAACCGAAGTCTTGAAAGAAAAGCTAGGCTTTAAGGTAAAATGACTGATTATCTATCACTAGCTAACTCTTGAAGTTGCTTTTGCATCAATATGCTTTCAAAGTCTGTACCAAATTTTTTGTAATATTAGCTGCTATTTTATTTTTCTGTGCATATTATTGACAATCGCTGCTGTAGGGTTTTGTGATTTCCGACTGGGAGGGGCTCGACCGACTTTGTAAGCCTCACGGATCAGATTATCGGTACTGCATCTCCTCTGCCGTCAATGCTGGAATTGACATGGTACATATCTTCAATTCCAATTATCTTTCATCATAGTGTATTTTCTTACTATGTTTTCACCTATTCAATAATATTTACGCAGGTGATGGTGGCTGTCAGGTACAAACTATTCATCGAAGAATTGACCTCTTTAATTGAATCAGGTGAAGTGCCAATGAGCAGAATCGATGATGCTGTTGCGCGAATTTTGAGAGTAAAGTTTGCTGCTGGTCTATTTGAATTTCCATTAAGTGACAGATCTTTGCTAGATACAGTTGGTTGCAAGGTAAGTCAAATTAGAACGTTTTAATATCTTATGTTCCCTGATTAATTGTTTGCATGTGCCATAATAGTACTTCTTTTGCAGCCACATAGAGATCTTGCACGGGAAGCAGTTCGAAAGTCGTTGGTTTTGTTGAAAAATGGAAAAGATATTAATGAACCTTTTCTTCCATTGAACAAGAATGCTAAGAGAATTCTTGTTACCGGAACACATGCTGATAATCTTGGATTTCAATGTGGAGGTTGGACTAAAACTTGGTATGGTGCTAGTGGGAGGATCACAGTTGGTAAGCTATGATATTTATGGAGAATATGAAGATTGATTGCAGTGTGTTTGGAAATACATATGTTTATTTATTGTAAGGCAAAATAGATTTTGTTCAGAAACCTTGGTTTGACCGAAAGTGATAAAATGTAGCTTTTATGCTTGTGTTTGTTTAAAAGATTTGTACTACATTTTACATAAAAAAAAAAAAAAAAAAAAAAATATTAATTATCTTGAACTACTTTTAACATACCAAAACACATTTATGGTGAAATGTTAATACTATATCTTTCCTGTTTATTCTGTATTTTTTCTCCGTTGTTAAACATGGTTGTCGTAGAACCACATTAACTTGTATACCTTACCATTTTAGGTTCAACAATCTTGGATGCTGTTAAAGCAGCCGTCGGAGCTGAAACACAGGTTATTTATGAGAAATATCCATCACAAGACACCATAGAACGTAAGGATTTCTCATTTGCGATTGTAGCTGTTGGTGAAGCTCCTTATGCTGAGTCATTGGGCGACAATTCAGAGCTCACAATCCCTTTCCGTGGAACTGATATTATAAGCTTAGTTGCCGATAAAATTCCAACATTGGTTATTCTGATATCTGGTAGACCGTTAGTTTTAGAGCCACGGCTTTTGGTAAAGATAGATGCTCTTGTTGCCGCTTGGTTGCCAGGTAGTGAAGGAGATGGAATCACAGATGTAATCTTTGGTAGCCATGACTTCAAAGGTCAACTCCCAGTCACTTGGTTTCGAAGCGTTGAACAGCTTGATCAACCAAGTGATAGTGTTGCTGCATGTGAACCTTTGTTTCCTCTTGGTTTTGGGCTGAACTACATGAATAAGTGA
Protein sequence

>MS.gene05603.t1

MDCLYKNPNEPIEARIKDLLSRMTLNEKIGQMIQIERTVATPSVIKDLSIGSILSSGGSGPFENALSSDWADMVDGYQKSALESRLGIPLIYGIDAVHGNNSVYGATIFPHNVGLGATRDADLVRRIGAATALEVKASGIHYNFAPCVAVCKDPRWGRCYECYSEDTEIVRRMTSIVSGLQGQPPQGHTHGYPFVAGRENVIACAKHFVGDGGTHEGVNEGDTILSYEDLERIHMAPYLNCISQGVSTIMASYTSWNGRKLHSDHFLLTEVLKEKLGFKGFVISDWEGLDRLCKPHGSDYRYCISSAVNAGIDMVMVAVRYKLFIEELTSLIESGEVPMSRIDDAVARILRVKFAAGLFEFPLSDRSLLDTVGCKPHRDLAREAVRKSLVLLKNGKDINEPFLPLNKNAKRILVTGTHADNLGFQCGGWTKTWYGASGRITVGSTILDAVKAAVGAETQVIYEKYPSQDTIERKDFSFAIVAVGEAPYAESLGDNSELTIPFRGTDIISLVADKIPTLVILISGRPLVLEPRLLVKIDALVAAWLPGSEGDGITDVIFGSHDFKGQLPVTWFRSVEQLDQPSDSVAACEPLFPLGFGLNYMNK