Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044300.t1 | XP_013461166.1 | 96.1 | 358 | 14 | 0 | 1 | 358 | 1 | 358 | 2.10E-177 | 631.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044300.t1 | Q6L8G0 | 54.9 | 357 | 144 | 4 | 8 | 358 | 8 | 353 | 6.2e-98 | 359.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044300.t1 | B7FI47 | 96.1 | 358 | 14 | 0 | 1 | 358 | 1 | 358 | 1.5e-177 | 631.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene044300 | MS.gene50197 | PPI |
| MS.gene044300 | MS.gene038972 | PPI |
| MS.gene044300 | MS.gene56999 | PPI |
| MS.gene066193 | MS.gene044300 | PPI |
| MS.gene009810 | MS.gene044300 | PPI |
| MS.gene044300 | MS.gene54167 | PPI |
| MS.gene62494 | MS.gene044300 | PPI |
| MS.gene045723 | MS.gene044300 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044300.t1 | MTR_3g081580 | 96.648 | 358 | 12 | 0 | 1 | 358 | 1 | 358 | 0.0 | 703 |
| MS.gene044300.t1 | MTR_3g081640 | 86.538 | 364 | 40 | 4 | 1 | 358 | 1 | 361 | 0.0 | 609 |
| MS.gene044300.t1 | MTR_3g082050 | 84.401 | 359 | 45 | 3 | 1 | 358 | 1 | 349 | 0.0 | 575 |
| MS.gene044300.t1 | MTR_3g082050 | 85.924 | 341 | 41 | 2 | 19 | 358 | 43 | 377 | 0.0 | 563 |
| MS.gene044300.t1 | MTR_3g082050 | 84.682 | 346 | 45 | 3 | 14 | 358 | 34 | 372 | 0.0 | 556 |
| MS.gene044300.t1 | MTR_3g081690 | 83.529 | 340 | 45 | 3 | 1 | 339 | 1 | 330 | 0.0 | 537 |
| MS.gene044300.t1 | MTR_3g081690 | 83.792 | 327 | 45 | 3 | 14 | 339 | 34 | 353 | 0.0 | 518 |
| MS.gene044300.t1 | MTR_2g064310 | 59.829 | 351 | 125 | 5 | 16 | 358 | 16 | 358 | 1.12e-140 | 403 |
| MS.gene044300.t1 | MTR_3g081690 | 79.638 | 221 | 38 | 2 | 120 | 339 | 25 | 239 | 2.19e-116 | 338 |
| MS.gene044300.t1 | MTR_4g083570 | 50.000 | 348 | 163 | 4 | 11 | 358 | 14 | 350 | 1.02e-112 | 332 |
| MS.gene044300.t1 | MTR_6g007687 | 50.435 | 345 | 153 | 4 | 15 | 355 | 14 | 344 | 1.14e-111 | 329 |
| MS.gene044300.t1 | MTR_8g105030 | 49.435 | 354 | 161 | 5 | 6 | 352 | 5 | 347 | 1.26e-111 | 331 |
| MS.gene044300.t1 | MTR_3g104400 | 47.238 | 362 | 158 | 4 | 28 | 358 | 6 | 365 | 2.14e-101 | 304 |
| MS.gene044300.t1 | MTR_3g081690 | 79.487 | 195 | 33 | 2 | 146 | 339 | 7 | 195 | 6.91e-100 | 294 |
| MS.gene044300.t1 | MTR_3g081690 | 80.000 | 195 | 32 | 2 | 146 | 339 | 29 | 217 | 1.26e-99 | 294 |
| MS.gene044300.t1 | MTR_1g016120 | 46.556 | 363 | 164 | 5 | 26 | 358 | 12 | 374 | 9.34e-97 | 292 |
| MS.gene044300.t1 | MTR_5g071990 | 41.691 | 343 | 167 | 8 | 24 | 358 | 1 | 318 | 7.91e-76 | 237 |
| MS.gene044300.t1 | MTR_3g081630 | 43.307 | 127 | 25 | 4 | 77 | 194 | 20 | 108 | 6.88e-21 | 87.8 |
| MS.gene044300.t1 | MTR_4g006710 | 45.455 | 88 | 47 | 1 | 37 | 124 | 26 | 112 | 6.22e-16 | 73.6 |
| MS.gene044300.t1 | MTR_3g073950 | 29.861 | 144 | 48 | 3 | 4 | 147 | 2 | 92 | 7.38e-14 | 68.2 |
| MS.gene044300.t1 | MTR_2g097580 | 23.404 | 329 | 207 | 12 | 37 | 357 | 44 | 335 | 4.07e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044300.t1 | AT3G12750 | 53.482 | 359 | 154 | 4 | 3 | 358 | 7 | 355 | 7.17e-133 | 384 |
| MS.gene044300.t1 | AT1G05300 | 57.440 | 336 | 136 | 5 | 26 | 358 | 29 | 360 | 2.24e-131 | 380 |
| MS.gene044300.t1 | AT2G32270 | 52.846 | 369 | 133 | 4 | 1 | 358 | 1 | 339 | 2.43e-124 | 361 |
| MS.gene044300.t1 | AT1G31260 | 51.190 | 336 | 156 | 3 | 27 | 358 | 33 | 364 | 1.06e-115 | 340 |
| MS.gene044300.t1 | AT5G62160 | 49.716 | 352 | 166 | 5 | 10 | 358 | 12 | 355 | 5.90e-109 | 323 |
| MS.gene044300.t1 | AT4G19690 | 47.309 | 353 | 164 | 4 | 11 | 358 | 12 | 347 | 5.46e-102 | 305 |
| MS.gene044300.t1 | AT2G04032 | 47.006 | 334 | 167 | 3 | 30 | 358 | 37 | 365 | 5.47e-102 | 305 |
| MS.gene044300.t1 | AT1G10970 | 45.405 | 370 | 158 | 5 | 28 | 358 | 10 | 374 | 5.45e-97 | 293 |
| MS.gene044300.t1 | AT1G10970 | 45.405 | 370 | 158 | 5 | 28 | 358 | 10 | 374 | 5.45e-97 | 293 |
| MS.gene044300.t1 | AT4G19680 | 45.042 | 353 | 182 | 5 | 9 | 358 | 7 | 350 | 4.35e-96 | 290 |
| MS.gene044300.t1 | AT1G60960 | 42.065 | 397 | 176 | 6 | 16 | 358 | 19 | 415 | 1.06e-93 | 286 |
| MS.gene044300.t1 | AT1G60960 | 42.065 | 397 | 176 | 6 | 16 | 358 | 29 | 425 | 1.27e-93 | 286 |
| MS.gene044300.t1 | AT4G33020 | 41.622 | 370 | 173 | 5 | 29 | 358 | 25 | 391 | 1.26e-87 | 270 |
| MS.gene044300.t1 | AT4G33020 | 41.210 | 347 | 163 | 4 | 50 | 358 | 1 | 344 | 6.84e-81 | 251 |
| MS.gene044300.t1 | AT1G05300 | 53.112 | 241 | 106 | 5 | 26 | 263 | 29 | 265 | 3.89e-77 | 238 |
| MS.gene044300.t1 | AT2G30080 | 41.964 | 336 | 169 | 7 | 37 | 358 | 18 | 341 | 6.42e-77 | 240 |
| MS.gene044300.t1 | AT4G19680 | 42.126 | 254 | 135 | 5 | 9 | 259 | 7 | 251 | 2.16e-58 | 190 |
| MS.gene044300.t1 | AT4G19690 | 45.455 | 143 | 73 | 2 | 11 | 148 | 12 | 154 | 3.69e-33 | 123 |
| MS.gene044300.t1 | AT1G60960 | 44.595 | 148 | 77 | 1 | 16 | 158 | 29 | 176 | 1.87e-31 | 120 |
Find 88 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAAAACCATTATTCTAAA+AGG | 0.128438 | 3.3:+69046777 | MS.gene044300:CDS |
| GAGTCTATCAATTACAATTA+TGG | 0.222804 | 3.3:+69048472 | MS.gene044300:CDS |
| CTTTGCTGCCGGTGTGATTT+TGG | 0.232022 | 3.3:+69046598 | MS.gene044300:CDS |
| CCATATGTCTTCTGTTTCTT+CGG | 0.263664 | 3.3:+69046901 | MS.gene044300:CDS |
| GGTGTTTGTATTCCACTTCT+AGG | 0.290466 | 3.3:+69046521 | MS.gene044300:CDS |
| GTCTGGGATCTTAATCTATA+TGG | 0.302604 | 3.3:+69048613 | MS.gene044300:CDS |
| CGTTATAATCGGAATTTCTC+TGG | 0.306357 | 3.3:+69047256 | MS.gene044300:CDS |
| AGTCTATCAATTACAATTAT+GGG | 0.317862 | 3.3:+69048473 | MS.gene044300:CDS |
| TGCAGCTACTAATGGCCTTA+TGG | 0.321595 | 3.3:-69047300 | None:intergenic |
| TTGTTTAAACGAACATCCTT+GGG | 0.333916 | 3.3:+69046673 | MS.gene044300:CDS |
| CATATGTCTTCTGTTTCTTC+GGG | 0.345408 | 3.3:+69046902 | MS.gene044300:CDS |
| CACCGCTATGGGGACTCTTA+TGG | 0.349455 | 3.3:+69046730 | MS.gene044300:CDS |
| TGCAATATATCTCTTCTATT+AGG | 0.359071 | 3.3:+69048707 | MS.gene044300:CDS |
| ATTGTTCACTCCGTTATAAT+CGG | 0.371066 | 3.3:+69047245 | MS.gene044300:CDS |
| TCATGATCCTTCTCCACATC+TGG | 0.377311 | 3.3:-69046830 | None:intergenic |
| TTCTTTGAAGGCATGGGACT+TGG | 0.380444 | 3.3:+69047338 | MS.gene044300:CDS |
| TTCTAAAAGGGCACCGGCAC+AGG | 0.381340 | 3.3:+69046790 | MS.gene044300:CDS |
| CTATTAAAGTCGGGATTATA+AGG | 0.382734 | 3.3:-69046394 | None:intergenic |
| TTCATTATAGGTATTGGAGT+TGG | 0.390852 | 3.3:+69047217 | MS.gene044300:intron |
| TCATTATAGGTATTGGAGTT+GGG | 0.392825 | 3.3:+69047218 | MS.gene044300:intron |
| ATATTCAATGCAGCATCGTC+TGG | 0.398905 | 3.3:+69048596 | MS.gene044300:CDS |
| CTTGTTTAAACGAACATCCT+TGG | 0.412853 | 3.3:+69046672 | MS.gene044300:CDS |
| TGAATATTCCCTCAACGATA+AGG | 0.414646 | 3.3:-69048580 | None:intergenic |
| TTATGTCTCTTATAGCCAAA+TGG | 0.421117 | 3.3:+69048738 | MS.gene044300:CDS |
| TCAAAACCATTATTCTAAAA+GGG | 0.424815 | 3.3:+69046778 | MS.gene044300:CDS |
| CCGAAGAAACAGAAGACATA+TGG | 0.436351 | 3.3:-69046901 | None:intergenic |
| CATCCTTGGATTCATAAAAT+CGG | 0.439919 | 3.3:-69048657 | None:intergenic |
| AAAGTCAATGCAGCTACTAA+TGG | 0.442176 | 3.3:-69047308 | None:intergenic |
| GTAAGATTCTCAAAAGCATC+AGG | 0.451833 | 3.3:-69046644 | None:intergenic |
| TATAAACATCTAAGCCCATT+TGG | 0.452842 | 3.3:-69048753 | None:intergenic |
| CATCAGTTCTTTGAAGGCAT+GGG | 0.453138 | 3.3:+69047332 | MS.gene044300:CDS |
| GAATATTCCCTCAACGATAA+GGG | 0.453927 | 3.3:-69048579 | None:intergenic |
| TATGTCTCTTATAGCCAAAT+GGG | 0.456505 | 3.3:+69048739 | MS.gene044300:CDS |
| TCATCAGTTCTTTGAAGGCA+TGG | 0.458960 | 3.3:+69047331 | MS.gene044300:CDS |
| ATACTAGTTGCAAGTGCAAT+TGG | 0.459070 | 3.3:+69046500 | MS.gene044300:CDS |
| TATCTTATAGCGAAGAGCTT+TGG | 0.461754 | 3.3:-69046462 | None:intergenic |
| ATATCTCTTCTATTAGGATC+TGG | 0.463707 | 3.3:+69048713 | MS.gene044300:CDS |
| ATGCCAATTGCAATTCCTAC+TGG | 0.465762 | 3.3:-69048518 | None:intergenic |
| ATCATCAAAGCCTTTGCTGC+CGG | 0.466007 | 3.3:+69046587 | MS.gene044300:CDS |
| TTACCTGTGTTATGACCCTA+TGG | 0.467781 | 3.3:-69046946 | None:intergenic |
| GTGGCTATGTGCACCGCTAT+GGG | 0.473126 | 3.3:+69046719 | MS.gene044300:CDS |
| AGGAAGCACGTGAATGAAAC+CGG | 0.480642 | 3.3:-69046624 | None:intergenic |
| CAACAGAACTTCTTCGCCAT+AGG | 0.493431 | 3.3:+69046930 | MS.gene044300:CDS |
| AAGAGTGGTAGACTTCGATT+AGG | 0.493822 | 3.3:+69048683 | MS.gene044300:CDS |
| CGAAGAAACAGAAGACATAT+GGG | 0.494314 | 3.3:-69046900 | None:intergenic |
| TGTGGCTATGTGCACCGCTA+TGG | 0.496742 | 3.3:+69046718 | MS.gene044300:CDS |
| AGTGATACCGGCGTTAAGCC+CGG | 0.503669 | 3.3:+69046547 | MS.gene044300:CDS |
| CAGAAAGTCCTAAAACCATA+AGG | 0.517926 | 3.3:+69047285 | MS.gene044300:CDS |
| ACTTCTAGGCAAAGTGATAC+CGG | 0.520170 | 3.3:+69046535 | MS.gene044300:CDS |
| CCAACCGCCCTTATCGTTGA+GGG | 0.522834 | 3.3:+69048572 | MS.gene044300:CDS |
| GTAGGAATTGCAATTGGCAT+AGG | 0.527061 | 3.3:+69048521 | MS.gene044300:CDS |
| CATTCTGCGGCTATTAAAGT+CGG | 0.528859 | 3.3:-69046404 | None:intergenic |
| GTTATAATCGGAATTTCTCT+GGG | 0.529243 | 3.3:+69047257 | MS.gene044300:CDS |
| ACCTCACTCTCAACCTGTGC+CGG | 0.532275 | 3.3:-69046803 | None:intergenic |
| AACAGAACTTCTTCGCCATA+GGG | 0.534397 | 3.3:+69046931 | MS.gene044300:CDS |
| CAAAATCACACCGGCAGCAA+AGG | 0.538156 | 3.3:-69046597 | None:intergenic |
| CAGAGAAATTCCGATTATAA+CGG | 0.538631 | 3.3:-69047255 | None:intergenic |
| ACTCCAGTAGGAATTGCAAT+TGG | 0.549229 | 3.3:+69048515 | MS.gene044300:CDS |
| TGGCGAAGAAGTTCTGTTGA+CGG | 0.549845 | 3.3:-69046926 | None:intergenic |
| ATAGCCACAAAACCAGTGAA+TGG | 0.552941 | 3.3:-69046704 | None:intergenic |
| TAGGAATTGCAATTGGCATA+GGG | 0.557383 | 3.3:+69048522 | MS.gene044300:CDS |
| ATTCTGCGGCTATTAAAGTC+GGG | 0.557508 | 3.3:-69046403 | None:intergenic |
| CCCTCAACGATAAGGGCGGT+TGG | 0.560206 | 3.3:-69048572 | None:intergenic |
| GGTATCACTTTGCCTAGAAG+TGG | 0.576674 | 3.3:-69046533 | None:intergenic |
| TGGCTATGTGCACCGCTATG+GGG | 0.578981 | 3.3:+69046720 | MS.gene044300:CDS |
| TATTCAATGCAGCATCGTCT+GGG | 0.579696 | 3.3:+69048597 | MS.gene044300:CDS |
| TTCATCACATGTGCATTCTG+CGG | 0.582209 | 3.3:-69046417 | None:intergenic |
| CAAGGATGTTCGTTTAAACA+AGG | 0.587088 | 3.3:-69046671 | None:intergenic |
| TTTGCTTTGACTACTCCAGT+AGG | 0.595259 | 3.3:+69048503 | MS.gene044300:CDS |
| TCCAACCGCCCTTATCGTTG+AGG | 0.600044 | 3.3:+69048571 | MS.gene044300:CDS |
| CCATTATTCTAAAAGGGCAC+CGG | 0.600771 | 3.3:+69046784 | MS.gene044300:CDS |
| TGCACATGTGATGAAGAAGA+TGG | 0.608430 | 3.3:+69046425 | MS.gene044300:CDS |
| ACCGGCACAGGTTGAGAGTG+AGG | 0.614701 | 3.3:+69046802 | MS.gene044300:CDS |
| GGTAACACCAGATGTGGAGA+AGG | 0.630798 | 3.3:+69046823 | MS.gene044300:CDS |
| TGTTTAAACGAACATCCTTG+GGG | 0.637545 | 3.3:+69046674 | MS.gene044300:CDS |
| GAGTGAGGTAACACCAGATG+TGG | 0.643136 | 3.3:+69046817 | MS.gene044300:CDS |
| TCGCCATAGGGTCATAACAC+AGG | 0.643471 | 3.3:+69046943 | MS.gene044300:CDS |
| ACTTGGAAGTTGTATAACAC+AGG | 0.657485 | 3.3:+69047355 | MS.gene044300:CDS |
| AATCCAAGGATGCAAAAGAG+TGG | 0.658857 | 3.3:+69048668 | MS.gene044300:CDS |
| GTTCATACTCATGCTTCACA+TGG | 0.660988 | 3.3:+69046866 | MS.gene044300:CDS |
| GTGAATGGAAAATCACCCCA+AGG | 0.670551 | 3.3:-69046689 | None:intergenic |
| GAAGGATCATGAAGGACACG+TGG | 0.676323 | 3.3:+69046841 | MS.gene044300:CDS |
| ACCGGTTGCCAAAATCACAC+CGG | 0.684552 | 3.3:-69046606 | None:intergenic |
| ATTGGCATAGGGATCAGTAG+TGG | 0.697771 | 3.3:+69048533 | MS.gene044300:CDS |
| TATTCCCTCAACGATAAGGG+CGG | 0.711008 | 3.3:-69048576 | None:intergenic |
| GATGTGGAGAAGGATCATGA+AGG | 0.713520 | 3.3:+69046833 | MS.gene044300:CDS |
| GAAGAAACAGAAGACATATG+GGG | 0.732324 | 3.3:-69046899 | None:intergenic |
| AACCATAAGAGTCCCCATAG+CGG | 0.744809 | 3.3:-69046732 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAGATTTATTAAAAAGAA+TGG | - | chr3.3:69047071-69047090 | None:intergenic | 10.0% |
| !!! | AATTATTTTGATTTCATTAT+AGG | + | chr3.3:69047205-69047224 | MS.gene044300:intron | 10.0% |
| !!! | AATTTTTCTAATTTCAATCA+TGG | + | chr3.3:69048073-69048092 | MS.gene044300:intron | 15.0% |
| !!! | ACAAATAAACTTTTTTTGAA+AGG | - | chr3.3:69047409-69047428 | None:intergenic | 15.0% |
| !!! | ATGAAAAATATATCTTTTTC+CGG | - | chr3.3:69046569-69046588 | None:intergenic | 15.0% |
| !!! | CATATTTCTTAATTTGTATT+GGG | + | chr3.3:69047997-69048016 | MS.gene044300:intron | 15.0% |
| !!! | TACATATATTGATTGAAATA+CGG | + | chr3.3:69047161-69047180 | MS.gene044300:intron | 15.0% |
| !!! | TCATATTTCTTAATTTGTAT+TGG | + | chr3.3:69047996-69048015 | MS.gene044300:intron | 15.0% |
| !! | AAACTTCATTAAAAAAACCA+AGG | - | chr3.3:69047689-69047708 | None:intergenic | 20.0% |
| !! | AAATTCAAATTTCATGCAAA+AGG | - | chr3.3:69048058-69048077 | None:intergenic | 20.0% |
| !! | AAGAAAAACATATTAAAGAG+TGG | - | chr3.3:69047973-69047992 | None:intergenic | 20.0% |
| !! | AGTCTATCAATTACAATTAT+GGG | + | chr3.3:69048473-69048492 | MS.gene044300:CDS | 20.0% |
| !! | TAGAAAATAGTGATAGTAAA+TGG | - | chr3.3:69048217-69048236 | None:intergenic | 20.0% |
| !! | TATCTTTGAATAAACAATAG+TGG | - | chr3.3:69047898-69047917 | None:intergenic | 20.0% |
| !! | TATTTCCAATGCTATTAAAT+TGG | - | chr3.3:69048286-69048305 | None:intergenic | 20.0% |
| !! | TTCAAAACCATTATTCTAAA+AGG | + | chr3.3:69046777-69046796 | MS.gene044300:CDS | 20.0% |
| !! | TTTAATGAAGTTTCAAATGT+AGG | + | chr3.3:69047696-69047715 | MS.gene044300:intron | 20.0% |
| !!! | ATCTTTTGAACATATGATAT+AGG | - | chr3.3:69047867-69047886 | None:intergenic | 20.0% |
| !!! | TCAAAACCATTATTCTAAAA+GGG | + | chr3.3:69046778-69046797 | MS.gene044300:CDS | 20.0% |
| !!! | TGAAAAATATATCTTTTTCC+GGG | - | chr3.3:69046568-69046587 | None:intergenic | 20.0% |
| !!! | TTTGATTTCATTATAGGTAT+TGG | + | chr3.3:69047211-69047230 | MS.gene044300:intron | 20.0% |
| ! | ACACAAACTATAGAAAAGAT+AGG | + | chr3.3:69047648-69047667 | MS.gene044300:intron | 25.0% |
| ! | GAGTCTATCAATTACAATTA+TGG | + | chr3.3:69048472-69048491 | MS.gene044300:CDS | 25.0% |
| ! | GTTTACCAATTTAATAGCAT+TGG | + | chr3.3:69048278-69048297 | MS.gene044300:intron | 25.0% |
| ! | TAAGTCAGCAAACAATTATA+AGG | - | chr3.3:69048420-69048439 | None:intergenic | 25.0% |
| ! | TATGATATAGGAACAAACAA+TGG | - | chr3.3:69047855-69047874 | None:intergenic | 25.0% |
| ! | TGCAATATATCTCTTCTATT+AGG | + | chr3.3:69048707-69048726 | MS.gene044300:CDS | 25.0% |
| !! | ATATATTGATTGAAATACGG+TGG | + | chr3.3:69047164-69047183 | MS.gene044300:intron | 25.0% |
| !! | ATTTGATTTCTGATGAGATT+CGG | - | chr3.3:69048126-69048145 | None:intergenic | 25.0% |
| !! | GTGAACTTTTCAATAAACTT+GGG | + | chr3.3:69047723-69047742 | MS.gene044300:intron | 25.0% |
| !! | TGTGAACTTTTCAATAAACT+TGG | + | chr3.3:69047722-69047741 | MS.gene044300:intron | 25.0% |
| !!! | ATAATTGTTTGCTGACTTAT+TGG | + | chr3.3:69048421-69048440 | MS.gene044300:intron | 25.0% |
| AATTGGTAAACCTTTAGTTG+TGG | - | chr3.3:69048269-69048288 | None:intergenic | 30.0% | |
| ATATCTCTTCTATTAGGATC+TGG | + | chr3.3:69048713-69048732 | MS.gene044300:CDS | 30.0% | |
| ATTGTTCACTCCGTTATAAT+CGG | + | chr3.3:69047245-69047264 | MS.gene044300:CDS | 30.0% | |
| CAGAGAAATTCCGATTATAA+CGG | - | chr3.3:69047258-69047277 | None:intergenic | 30.0% | |
| CATCCTTGGATTCATAAAAT+CGG | - | chr3.3:69048660-69048679 | None:intergenic | 30.0% | |
| CATTGGAAATACTTGCAAAA+AGG | + | chr3.3:69048295-69048314 | MS.gene044300:intron | 30.0% | |
| CTAGTGTGAGTAATATTCAA+AGG | - | chr3.3:69048246-69048265 | None:intergenic | 30.0% | |
| CTATTAAAGTCGGGATTATA+AGG | - | chr3.3:69046397-69046416 | None:intergenic | 30.0% | |
| GTTATAATCGGAATTTCTCT+GGG | + | chr3.3:69047257-69047276 | MS.gene044300:CDS | 30.0% | |
| TATGTCTCTTATAGCCAAAT+GGG | + | chr3.3:69048739-69048758 | MS.gene044300:CDS | 30.0% | |
| TTATGTCTCTTATAGCCAAA+TGG | + | chr3.3:69048738-69048757 | MS.gene044300:CDS | 30.0% | |
| TTGTTTAAACGAACATCCTT+GGG | + | chr3.3:69046673-69046692 | MS.gene044300:CDS | 30.0% | |
| ! | ACTTTTCATCAGTTCTTTGA+AGG | + | chr3.3:69047326-69047345 | MS.gene044300:CDS | 30.0% |
| ! | GAATAAACAATAGTGGAGTT+TGG | - | chr3.3:69047891-69047910 | None:intergenic | 30.0% |
| !! | AAACTATTTCTGACTGTACA+TGG | + | chr3.3:69047508-69047527 | MS.gene044300:intron | 30.0% |
| !! | AACTATTTCTGACTGTACAT+GGG | + | chr3.3:69047509-69047528 | MS.gene044300:intron | 30.0% |
| !! | TCATTATAGGTATTGGAGTT+GGG | + | chr3.3:69047218-69047237 | MS.gene044300:intron | 30.0% |
| !! | TTCATTATAGGTATTGGAGT+TGG | + | chr3.3:69047217-69047236 | MS.gene044300:intron | 30.0% |
| !!! | ATGGTTTTGAAAATAAGCAG+TGG | - | chr3.3:69046768-69046787 | None:intergenic | 30.0% |
| !!! | GTTATGAGAACTCTTTTTTG+CGG | - | chr3.3:69048031-69048050 | None:intergenic | 30.0% |
| AAAGTCAATGCAGCTACTAA+TGG | - | chr3.3:69047311-69047330 | None:intergenic | 35.0% | |
| ACTTGGAAGTTGTATAACAC+AGG | + | chr3.3:69047355-69047374 | MS.gene044300:CDS | 35.0% | |
| ATACTAGTTGCAAGTGCAAT+TGG | + | chr3.3:69046500-69046519 | MS.gene044300:CDS | 35.0% | |
| CAAGGATGTTCGTTTAAACA+AGG | - | chr3.3:69046674-69046693 | None:intergenic | 35.0% | |
| CAGAAAGTCCTAAAACCATA+AGG | + | chr3.3:69047285-69047304 | MS.gene044300:CDS | 35.0% | |
| CGAAGAAACAGAAGACATAT+GGG | - | chr3.3:69046903-69046922 | None:intergenic | 35.0% | |
| CGTTATAATCGGAATTTCTC+TGG | + | chr3.3:69047256-69047275 | MS.gene044300:CDS | 35.0% | |
| CTTGTTTAAACGAACATCCT+TGG | + | chr3.3:69046672-69046691 | MS.gene044300:CDS | 35.0% | |
| GAAGAAACAGAAGACATATG+GGG | - | chr3.3:69046902-69046921 | None:intergenic | 35.0% | |
| GAATATTCCCTCAACGATAA+GGG | - | chr3.3:69048582-69048601 | None:intergenic | 35.0% | |
| TAGGAATTGCAATTGGCATA+GGG | + | chr3.3:69048522-69048541 | MS.gene044300:CDS | 35.0% | |
| TATCTTATAGCGAAGAGCTT+TGG | - | chr3.3:69046465-69046484 | None:intergenic | 35.0% | |
| TGAATATTCCCTCAACGATA+AGG | - | chr3.3:69048583-69048602 | None:intergenic | 35.0% | |
| TGTTTAAACGAACATCCTTG+GGG | + | chr3.3:69046674-69046693 | MS.gene044300:CDS | 35.0% | |
| TTGAGTGATATGCAAACACA+TGG | - | chr3.3:69047536-69047555 | None:intergenic | 35.0% | |
| ! | AAAGAGTGGTGCTAGAAAAA+GGG | - | chr3.3:69047959-69047978 | None:intergenic | 35.0% |
| ! | CATATGTCTTCTGTTTCTTC+GGG | + | chr3.3:69046902-69046921 | MS.gene044300:CDS | 35.0% |
| ! | CCATATGTCTTCTGTTTCTT+CGG | + | chr3.3:69046901-69046920 | MS.gene044300:CDS | 35.0% |
| ! | GGATAAGACTTTTCAAACCT+TGG | + | chr3.3:69047669-69047688 | MS.gene044300:intron | 35.0% |
| ! | GTCTGGGATCTTAATCTATA+TGG | + | chr3.3:69048613-69048632 | MS.gene044300:CDS | 35.0% |
| ! | TAAAGAGTGGTGCTAGAAAA+AGG | - | chr3.3:69047960-69047979 | None:intergenic | 35.0% |
| ! | TGTGACCAATGCATTTTGTT+GGG | + | chr3.3:69047826-69047845 | MS.gene044300:intron | 35.0% |
| !! | GTAAGATTCTCAAAAGCATC+AGG | - | chr3.3:69046647-69046666 | None:intergenic | 35.0% |
| !!! | ACTAATGGCCTTATGGTTTT+AGG | - | chr3.3:69047296-69047315 | None:intergenic | 35.0% |
| !!! | TTTTCCATTCACTGGTTTTG+TGG | + | chr3.3:69046700-69046719 | MS.gene044300:CDS | 35.0% |
| AACAGAACTTCTTCGCCATA+GGG | + | chr3.3:69046931-69046950 | MS.gene044300:CDS | 40.0% | |
| AAGAGTGGTAGACTTCGATT+AGG | + | chr3.3:69048683-69048702 | MS.gene044300:CDS | 40.0% | |
| AATCCAAGGATGCAAAAGAG+TGG | + | chr3.3:69048668-69048687 | MS.gene044300:CDS | 40.0% | |
| ACTCCAGTAGGAATTGCAAT+TGG | + | chr3.3:69048515-69048534 | MS.gene044300:CDS | 40.0% | |
| ACTTCTAGGCAAAGTGATAC+CGG | + | chr3.3:69046535-69046554 | MS.gene044300:CDS | 40.0% | |
| ATAGCCACAAAACCAGTGAA+TGG | - | chr3.3:69046707-69046726 | None:intergenic | 40.0% | |
| ATATTCAATGCAGCATCGTC+TGG | + | chr3.3:69048596-69048615 | MS.gene044300:CDS | 40.0% | |
| ATGCCAATTGCAATTCCTAC+TGG | - | chr3.3:69048521-69048540 | None:intergenic | 40.0% | |
| ATTCTGCGGCTATTAAAGTC+GGG | - | chr3.3:69046406-69046425 | None:intergenic | 40.0% | |
| ATTGGATGTGTGATCATTGC+AGG | + | chr3.3:69048439-69048458 | MS.gene044300:intron | 40.0% | |
| CAACAACCAAACCAAACACA+TGG | - | chr3.3:69047624-69047643 | None:intergenic | 40.0% | |
| CATTCTGCGGCTATTAAAGT+CGG | - | chr3.3:69046407-69046426 | None:intergenic | 40.0% | |
| CCGAAGAAACAGAAGACATA+TGG | - | chr3.3:69046904-69046923 | None:intergenic | 40.0% | |
| GGAAACCCAACAAAATGCAT+TGG | - | chr3.3:69047834-69047853 | None:intergenic | 40.0% | |
| GGTGTTTGTATTCCACTTCT+AGG | + | chr3.3:69046521-69046540 | MS.gene044300:CDS | 40.0% | |
| GTAGGAATTGCAATTGGCAT+AGG | + | chr3.3:69048521-69048540 | MS.gene044300:CDS | 40.0% | |
| GTTCATACTCATGCTTCACA+TGG | + | chr3.3:69046866-69046885 | MS.gene044300:CDS | 40.0% | |
| TATTCAATGCAGCATCGTCT+GGG | + | chr3.3:69048597-69048616 | MS.gene044300:CDS | 40.0% | |
| TGCACATGTGATGAAGAAGA+TGG | + | chr3.3:69046425-69046444 | MS.gene044300:CDS | 40.0% | |
| TTACCTGTGTTATGACCCTA+TGG | - | chr3.3:69046949-69046968 | None:intergenic | 40.0% | |
| TTCATCACATGTGCATTCTG+CGG | - | chr3.3:69046420-69046439 | None:intergenic | 40.0% | |
| TTGGTCACACAAAGATTGAG+AGG | - | chr3.3:69047815-69047834 | None:intergenic | 40.0% | |
| TTTGCTTTGACTACTCCAGT+AGG | + | chr3.3:69048503-69048522 | MS.gene044300:CDS | 40.0% | |
| ! | CATCAGTTCTTTGAAGGCAT+GGG | + | chr3.3:69047332-69047351 | MS.gene044300:CDS | 40.0% |
| ! | CCATTATTCTAAAAGGGCAC+CGG | + | chr3.3:69046784-69046803 | MS.gene044300:CDS | 40.0% |
| ! | GTGTGACCAATGCATTTTGT+TGG | + | chr3.3:69047825-69047844 | MS.gene044300:intron | 40.0% |
| ! | TCATCAGTTCTTTGAAGGCA+TGG | + | chr3.3:69047331-69047350 | MS.gene044300:CDS | 40.0% |
| ! | TTCTGATGAGATTCGGTTGA+AGG | - | chr3.3:69048119-69048138 | None:intergenic | 40.0% |
| !!! | CTGCCGATTTTATGAATCCA+AGG | + | chr3.3:69048654-69048673 | MS.gene044300:CDS | 40.0% |
| AACCATAAGAGTCCCCATAG+CGG | - | chr3.3:69046735-69046754 | None:intergenic | 45.0% | |
| ATCATCAAAGCCTTTGCTGC+CGG | + | chr3.3:69046587-69046606 | MS.gene044300:CDS | 45.0% | |
| ATTGGCATAGGGATCAGTAG+TGG | + | chr3.3:69048533-69048552 | MS.gene044300:CDS | 45.0% | |
| CAACAGAACTTCTTCGCCAT+AGG | + | chr3.3:69046930-69046949 | MS.gene044300:CDS | 45.0% | |
| CTCACACTAGCCACAACTAA+AGG | + | chr3.3:69048256-69048275 | MS.gene044300:intron | 45.0% | |
| GATGTGGAGAAGGATCATGA+AGG | + | chr3.3:69046833-69046852 | MS.gene044300:CDS | 45.0% | |
| GGTATCACTTTGCCTAGAAG+TGG | - | chr3.3:69046536-69046555 | None:intergenic | 45.0% | |
| GTGAATGGAAAATCACCCCA+AGG | - | chr3.3:69046692-69046711 | None:intergenic | 45.0% | |
| TATTCCCTCAACGATAAGGG+CGG | - | chr3.3:69048579-69048598 | None:intergenic | 45.0% | |
| TCATGATCCTTCTCCACATC+TGG | - | chr3.3:69046833-69046852 | None:intergenic | 45.0% | |
| TGGCGAAGAAGTTCTGTTGA+CGG | - | chr3.3:69046929-69046948 | None:intergenic | 45.0% | |
| TTGGGACCATGTGTTTGGTT+TGG | + | chr3.3:69047615-69047634 | MS.gene044300:intron | 45.0% | |
| ! | AGGAAGCACGTGAATGAAAC+CGG | - | chr3.3:69046627-69046646 | None:intergenic | 45.0% |
| ! | CTACCACTCTTTTGCATCCT+TGG | - | chr3.3:69048674-69048693 | None:intergenic | 45.0% |
| ! | TGCAGCTACTAATGGCCTTA+TGG | - | chr3.3:69047303-69047322 | None:intergenic | 45.0% |
| ! | TGGGGTGATTTTCCATTCAC+TGG | + | chr3.3:69046692-69046711 | MS.gene044300:CDS | 45.0% |
| ! | TTCTTTGAAGGCATGGGACT+TGG | + | chr3.3:69047338-69047357 | MS.gene044300:CDS | 45.0% |
| !!! | CCGGTGCCCTTTTAGAATAA+TGG | - | chr3.3:69046787-69046806 | None:intergenic | 45.0% |
| AACACATGGTCCCAAGCACA+TGG | - | chr3.3:69047610-69047629 | None:intergenic | 50.0% | |
| ACACATGGTCCCAAGCACAT+GGG | - | chr3.3:69047609-69047628 | None:intergenic | 50.0% | |
| ACCGGTTGCCAAAATCACAC+CGG | - | chr3.3:69046609-69046628 | None:intergenic | 50.0% | |
| CAAAATCACACCGGCAGCAA+AGG | - | chr3.3:69046600-69046619 | None:intergenic | 50.0% | |
| GAAGGATCATGAAGGACACG+TGG | + | chr3.3:69046841-69046860 | MS.gene044300:CDS | 50.0% | |
| GAGTGAGGTAACACCAGATG+TGG | + | chr3.3:69046817-69046836 | MS.gene044300:CDS | 50.0% | |
| GGTAACACCAGATGTGGAGA+AGG | + | chr3.3:69046823-69046842 | MS.gene044300:CDS | 50.0% | |
| GTTCATGAGCCCATGTGCTT+GGG | + | chr3.3:69047597-69047616 | MS.gene044300:intron | 50.0% | |
| TCGCCATAGGGTCATAACAC+AGG | + | chr3.3:69046943-69046962 | MS.gene044300:CDS | 50.0% | |
| TGTGCTTGGGACCATGTGTT+TGG | + | chr3.3:69047610-69047629 | MS.gene044300:intron | 50.0% | |
| TGTTCATGAGCCCATGTGCT+TGG | + | chr3.3:69047596-69047615 | MS.gene044300:intron | 50.0% | |
| ! | CTTTGCTGCCGGTGTGATTT+TGG | + | chr3.3:69046598-69046617 | MS.gene044300:CDS | 50.0% |
| ! | TCTTTTTCCGGGCTTAACGC+CGG | - | chr3.3:69046557-69046576 | None:intergenic | 50.0% |
| ACCTCACTCTCAACCTGTGC+CGG | - | chr3.3:69046806-69046825 | None:intergenic | 55.0% | |
| AGTGATACCGGCGTTAAGCC+CGG | + | chr3.3:69046547-69046566 | MS.gene044300:CDS | 55.0% | |
| CACCGCTATGGGGACTCTTA+TGG | + | chr3.3:69046730-69046749 | MS.gene044300:CDS | 55.0% | |
| CCAACCGCCCTTATCGTTGA+GGG | + | chr3.3:69048572-69048591 | MS.gene044300:CDS | 55.0% | |
| GTGGCTATGTGCACCGCTAT+GGG | + | chr3.3:69046719-69046738 | MS.gene044300:CDS | 55.0% | |
| TCCAACCGCCCTTATCGTTG+AGG | + | chr3.3:69048571-69048590 | MS.gene044300:CDS | 55.0% | |
| TGGCTATGTGCACCGCTATG+GGG | + | chr3.3:69046720-69046739 | MS.gene044300:CDS | 55.0% | |
| TGTGGCTATGTGCACCGCTA+TGG | + | chr3.3:69046718-69046737 | MS.gene044300:CDS | 55.0% | |
| !! | GCCGGTGTGATTTTGGCAAC+CGG | + | chr3.3:69046605-69046624 | MS.gene044300:CDS | 55.0% |
| !! | TTCTAAAAGGGCACCGGCAC+AGG | + | chr3.3:69046790-69046809 | MS.gene044300:CDS | 55.0% |
| CCCTCAACGATAAGGGCGGT+TGG | - | chr3.3:69048575-69048594 | None:intergenic | 60.0% | |
| ! | ACCGGCACAGGTTGAGAGTG+AGG | + | chr3.3:69046802-69046821 | MS.gene044300:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 69046344 | 69048766 | 69046344 | ID=MS.gene044300 |
| chr3.3 | mRNA | 69046344 | 69048766 | 69046344 | ID=MS.gene044300.t1;Parent=MS.gene044300 |
| chr3.3 | exon | 69046344 | 69046964 | 69046344 | ID=MS.gene044300.t1.exon1;Parent=MS.gene044300.t1 |
| chr3.3 | CDS | 69046344 | 69046964 | 69046344 | ID=cds.MS.gene044300.t1;Parent=MS.gene044300.t1 |
| chr3.3 | exon | 69047227 | 69047376 | 69047227 | ID=MS.gene044300.t1.exon2;Parent=MS.gene044300.t1 |
| chr3.3 | CDS | 69047227 | 69047376 | 69047227 | ID=cds.MS.gene044300.t1;Parent=MS.gene044300.t1 |
| chr3.3 | exon | 69048461 | 69048766 | 69048461 | ID=MS.gene044300.t1.exon3;Parent=MS.gene044300.t1 |
| chr3.3 | CDS | 69048461 | 69048766 | 69048461 | ID=cds.MS.gene044300.t1;Parent=MS.gene044300.t1 |
| Gene Sequence |
| Protein sequence |
