Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044303.t1 | AES71719.2 | 95.2 | 353 | 13 | 1 | 1 | 353 | 1 | 349 | 5.50E-167 | 597 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044303.t1 | Q6L8G0 | 55.7 | 348 | 150 | 3 | 8 | 353 | 8 | 353 | 8.0e-98 | 358.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044303.t1 | G7J822 | 95.2 | 353 | 13 | 1 | 1 | 353 | 1 | 349 | 4.0e-167 | 597.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene044303 | MS.gene066193 | PPI |
| MS.gene044303 | MS.gene045723 | PPI |
| MS.gene044303 | MS.gene009810 | PPI |
| MS.gene044303 | MS.gene54167 | PPI |
| MS.gene044303 | MS.gene50197 | PPI |
| MS.gene044303 | MS.gene038972 | PPI |
| MS.gene044303 | MS.gene62494 | PPI |
| MS.gene044303 | MS.gene56999 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044303.t1 | MTR_3g082050 | 95.467 | 353 | 12 | 1 | 1 | 353 | 1 | 349 | 0.0 | 686 |
| MS.gene044303.t1 | MTR_3g082050 | 93.983 | 349 | 21 | 0 | 5 | 353 | 29 | 377 | 0.0 | 612 |
| MS.gene044303.t1 | MTR_3g082050 | 97.161 | 317 | 9 | 0 | 37 | 353 | 56 | 372 | 0.0 | 600 |
| MS.gene044303.t1 | MTR_3g081640 | 84.211 | 361 | 49 | 3 | 1 | 353 | 1 | 361 | 0.0 | 594 |
| MS.gene044303.t1 | MTR_3g081580 | 83.799 | 358 | 53 | 2 | 1 | 353 | 1 | 358 | 0.0 | 585 |
| MS.gene044303.t1 | MTR_3g081690 | 91.453 | 351 | 19 | 2 | 1 | 351 | 1 | 340 | 0.0 | 577 |
| MS.gene044303.t1 | MTR_3g081690 | 92.698 | 315 | 16 | 1 | 37 | 351 | 56 | 363 | 0.0 | 555 |
| MS.gene044303.t1 | MTR_2g064310 | 59.659 | 352 | 133 | 5 | 9 | 353 | 9 | 358 | 2.79e-145 | 415 |
| MS.gene044303.t1 | MTR_3g081690 | 87.931 | 232 | 21 | 1 | 120 | 351 | 25 | 249 | 2.48e-130 | 373 |
| MS.gene044303.t1 | MTR_6g007687 | 51.594 | 345 | 154 | 4 | 10 | 350 | 9 | 344 | 4.36e-115 | 338 |
| MS.gene044303.t1 | MTR_3g081690 | 88.835 | 206 | 16 | 1 | 146 | 351 | 7 | 205 | 5.11e-114 | 330 |
| MS.gene044303.t1 | MTR_3g081690 | 89.320 | 206 | 15 | 1 | 146 | 351 | 29 | 227 | 1.37e-113 | 330 |
| MS.gene044303.t1 | MTR_8g105030 | 50.733 | 341 | 162 | 3 | 11 | 347 | 9 | 347 | 2.62e-113 | 335 |
| MS.gene044303.t1 | MTR_4g083570 | 50.145 | 345 | 167 | 2 | 9 | 353 | 11 | 350 | 1.65e-112 | 331 |
| MS.gene044303.t1 | MTR_3g104400 | 48.476 | 361 | 150 | 4 | 28 | 353 | 6 | 365 | 3.79e-105 | 313 |
| MS.gene044303.t1 | MTR_1g016120 | 46.721 | 366 | 154 | 5 | 26 | 353 | 12 | 374 | 1.34e-96 | 291 |
| MS.gene044303.t1 | MTR_5g071990 | 41.593 | 339 | 168 | 8 | 24 | 353 | 1 | 318 | 2.26e-75 | 235 |
| MS.gene044303.t1 | MTR_3g081630 | 70.769 | 65 | 8 | 2 | 77 | 132 | 20 | 82 | 5.93e-22 | 90.5 |
| MS.gene044303.t1 | MTR_4g006710 | 44.318 | 88 | 48 | 1 | 37 | 124 | 26 | 112 | 1.97e-15 | 72.0 |
| MS.gene044303.t1 | MTR_3g073950 | 29.252 | 147 | 49 | 3 | 1 | 147 | 1 | 92 | 1.84e-12 | 63.9 |
| MS.gene044303.t1 | MTR_2g097580 | 23.077 | 325 | 208 | 12 | 37 | 352 | 44 | 335 | 3.44e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044303.t1 | AT3G12750 | 54.648 | 355 | 151 | 4 | 3 | 353 | 7 | 355 | 4.79e-135 | 389 |
| MS.gene044303.t1 | AT1G05300 | 58.084 | 334 | 132 | 5 | 26 | 353 | 29 | 360 | 4.88e-134 | 386 |
| MS.gene044303.t1 | AT2G32270 | 54.596 | 359 | 130 | 6 | 5 | 353 | 4 | 339 | 6.43e-126 | 365 |
| MS.gene044303.t1 | AT1G31260 | 51.205 | 332 | 157 | 2 | 27 | 353 | 33 | 364 | 1.16e-115 | 340 |
| MS.gene044303.t1 | AT5G62160 | 48.864 | 352 | 161 | 6 | 13 | 353 | 12 | 355 | 4.17e-108 | 320 |
| MS.gene044303.t1 | AT2G04032 | 48.348 | 333 | 165 | 4 | 26 | 353 | 35 | 365 | 3.23e-105 | 313 |
| MS.gene044303.t1 | AT4G19690 | 48.476 | 328 | 155 | 3 | 27 | 353 | 33 | 347 | 7.24e-102 | 304 |
| MS.gene044303.t1 | AT1G10970 | 45.753 | 365 | 159 | 3 | 28 | 353 | 10 | 374 | 1.59e-99 | 299 |
| MS.gene044303.t1 | AT1G10970 | 45.753 | 365 | 159 | 3 | 28 | 353 | 10 | 374 | 1.59e-99 | 299 |
| MS.gene044303.t1 | AT1G60960 | 43.325 | 397 | 166 | 5 | 16 | 353 | 19 | 415 | 1.03e-97 | 296 |
| MS.gene044303.t1 | AT1G60960 | 43.325 | 397 | 166 | 5 | 16 | 353 | 29 | 425 | 1.32e-97 | 296 |
| MS.gene044303.t1 | AT4G19680 | 44.413 | 349 | 185 | 6 | 9 | 353 | 7 | 350 | 7.24e-95 | 286 |
| MS.gene044303.t1 | AT4G33020 | 41.240 | 371 | 168 | 5 | 29 | 353 | 25 | 391 | 2.43e-86 | 266 |
| MS.gene044303.t1 | AT4G33020 | 41.092 | 348 | 157 | 4 | 50 | 353 | 1 | 344 | 1.62e-80 | 249 |
| MS.gene044303.t1 | AT1G05300 | 53.138 | 239 | 104 | 5 | 26 | 258 | 29 | 265 | 3.76e-79 | 243 |
| MS.gene044303.t1 | AT2G30080 | 42.169 | 332 | 169 | 7 | 37 | 353 | 18 | 341 | 1.18e-74 | 234 |
| MS.gene044303.t1 | AT4G19680 | 42.000 | 250 | 136 | 6 | 9 | 254 | 7 | 251 | 1.40e-59 | 193 |
| MS.gene044303.t1 | AT4G19690 | 39.227 | 181 | 90 | 4 | 27 | 203 | 33 | 197 | 2.91e-33 | 123 |
| MS.gene044303.t1 | AT1G60960 | 45.270 | 148 | 76 | 1 | 16 | 158 | 29 | 176 | 1.04e-31 | 121 |
| MS.gene044303.t1 | AT1G55910 | 22.455 | 334 | 212 | 13 | 31 | 352 | 26 | 324 | 3.36e-11 | 63.9 |
Find 79 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAGAACCATTATTCTAAA+AGG | 0.154778 | 3.4:+77523444 | MS.gene044303:CDS |
| ATGTCAAACTCTTTGTTCTT+TGG | 0.233067 | 3.4:+77523027 | MS.gene044303:CDS |
| TGAAGATTCCTTCAACAATA+AGG | 0.241739 | 3.4:-77524991 | None:intergenic |
| ATTTGCTGCCGGTGTGATTT+TGG | 0.254157 | 3.4:+77523265 | MS.gene044303:CDS |
| TGCACATGGTCATATTTCTT+TGG | 0.273397 | 3.4:+77523553 | MS.gene044303:CDS |
| TGTTCTTCATTCTCCACGTC+TGG | 0.292100 | 3.4:-77523497 | None:intergenic |
| AGCTGGGATCTTAATCTATA+TGG | 0.309946 | 3.4:+77525024 | MS.gene044303:CDS |
| AAGAATGGTAGGCTTCAATT+TGG | 0.323201 | 3.4:+77525094 | MS.gene044303:CDS |
| GGTGTTTGTCTCCCACTTCT+TGG | 0.328296 | 3.4:+77523188 | MS.gene044303:CDS |
| TTGTTTAAACGAACATCCTT+GGG | 0.333916 | 3.4:+77523340 | MS.gene044303:CDS |
| CATCAGAACTTCTTCGTCAT+AGG | 0.342133 | 3.4:+77523582 | MS.gene044303:CDS |
| CACCGCTATGGGGACTCTTA+TGG | 0.349455 | 3.4:+77523397 | MS.gene044303:CDS |
| TCCTAGTAGAAGAGATATAT+TGG | 0.367561 | 3.4:-77525119 | None:intergenic |
| ATCTTCAATGCAGCTTCAGC+TGG | 0.368873 | 3.4:+77525007 | MS.gene044303:CDS |
| CCAACTGCCCTTATTGTTGA+AGG | 0.374782 | 3.4:+77524983 | MS.gene044303:CDS |
| GAAGATTCCTTCAACAATAA+GGG | 0.377298 | 3.4:-77524990 | None:intergenic |
| TTCTTTGAAGGCATGGGACT+TGG | 0.380444 | 3.4:+77523947 | MS.gene044303:CDS |
| TTCTAAAAGGGCACCGGCAC+AGG | 0.381340 | 3.4:+77523457 | MS.gene044303:CDS |
| AACACCTAGCTAAGCCCATT+TGG | 0.382789 | 3.4:-77525164 | None:intergenic |
| ATTGTTCACTCTGTTATCAT+AGG | 0.385296 | 3.4:+77523854 | MS.gene044303:CDS |
| GTATGTCTCTTCTAGCCAAA+TGG | 0.386544 | 3.4:+77525149 | MS.gene044303:CDS |
| CTTGTTTAAACGAACATCCT+TGG | 0.412853 | 3.4:+77523339 | MS.gene044303:CDS |
| GTAGGAATAGGAATTGGCTT+AGG | 0.413766 | 3.4:+77524932 | MS.gene044303:CDS |
| TAATCATAGGTGTTGGAGTT+GGG | 0.414004 | 3.4:+77523827 | MS.gene044303:intron |
| GTTCTTCATTCTCCACGTCT+GGG | 0.415278 | 3.4:-77523496 | None:intergenic |
| TTGACTACTCCAGTAGGAAT+AGG | 0.425117 | 3.4:+77524920 | MS.gene044303:CDS |
| CACTCTGCGGCTATTAGAGT+TGG | 0.430490 | 3.4:-77523071 | None:intergenic |
| TATGTCTCTTCTAGCCAAAT+GGG | 0.432359 | 3.4:+77525150 | MS.gene044303:CDS |
| GCCTGACTTTCAACCTGTGC+CGG | 0.435020 | 3.4:-77523470 | None:intergenic |
| TCAGAACCATTATTCTAAAA+GGG | 0.435286 | 3.4:+77523445 | MS.gene044303:CDS |
| ACCGGCACAGGTTGAAAGTC+AGG | 0.444330 | 3.4:+77523469 | MS.gene044303:CDS |
| AAGCCAATTCCTATTCCTAC+TGG | 0.450773 | 3.4:-77524929 | None:intergenic |
| GTAAGATTCTCAAAAGCATC+AGG | 0.451833 | 3.4:-77523311 | None:intergenic |
| CATCAGTTCTTTGAAGGCAT+GGG | 0.453138 | 3.4:+77523941 | MS.gene044303:CDS |
| TCATCAGTTCTTTGAAGGCA+TGG | 0.458960 | 3.4:+77523940 | MS.gene044303:CDS |
| GTGGCTATGTGCACCGCTAT+GGG | 0.473126 | 3.4:+77523386 | MS.gene044303:CDS |
| ACTCCAGTAGGAATAGGAAT+TGG | 0.474881 | 3.4:+77524926 | MS.gene044303:CDS |
| TGTGGCTATGTGCACCGCTA+TGG | 0.496742 | 3.4:+77523385 | MS.gene044303:CDS |
| ATCAGAACTTCTTCGTCATA+GGG | 0.504567 | 3.4:+77523583 | MS.gene044303:CDS |
| AGGAAGCACATGAATGAAAC+CGG | 0.505115 | 3.4:-77523291 | None:intergenic |
| ATATTAGTTGCAAGTGCAAT+CGG | 0.511165 | 3.4:+77523167 | MS.gene044303:CDS |
| GTGACGAAGAAGATGAAGAA+AGG | 0.513450 | 3.4:+77523099 | MS.gene044303:CDS |
| ACTTCTTGGCAAAGTGATAC+CGG | 0.514499 | 3.4:+77523202 | MS.gene044303:CDS |
| TAGGAATAGGAATTGGCTTA+GGG | 0.516025 | 3.4:+77524933 | MS.gene044303:CDS |
| GAGTCTATCAATTACAGTCA+TGG | 0.527216 | 3.4:+77524883 | MS.gene044303:CDS |
| ACTCTGCGGCTATTAGAGTT+GGG | 0.527671 | 3.4:-77523070 | None:intergenic |
| TTAATCATAGGTGTTGGAGT+TGG | 0.528223 | 3.4:+77523826 | MS.gene044303:intron |
| TGACGAAGAAGATGAAGAAA+GGG | 0.528446 | 3.4:+77523100 | MS.gene044303:CDS |
| AGTCTATCAATTACAGTCAT+GGG | 0.530284 | 3.4:+77524884 | MS.gene044303:CDS |
| TCGTCATAGGGTCATATCAC+AGG | 0.536885 | 3.4:+77523595 | MS.gene044303:CDS |
| ATCATCAAAGCATTTGCTGC+CGG | 0.538366 | 3.4:+77523254 | MS.gene044303:CDS |
| ATATCTCTTCTACTAGGAGC+TGG | 0.544358 | 3.4:+77525124 | MS.gene044303:CDS |
| TCCTAAAACTGTAAGACCAT+TGG | 0.549462 | 3.4:+77523901 | MS.gene044303:CDS |
| CCTTCAACAATAAGGGCAGT+TGG | 0.549952 | 3.4:-77524983 | None:intergenic |
| GTTATCATAGGAATTTCTCT+AGG | 0.552566 | 3.4:+77523866 | MS.gene044303:CDS |
| ATAGCCACAAAACCAGTGAA+TGG | 0.552941 | 3.4:-77523371 | None:intergenic |
| GGTATCACTTTGCCAAGAAG+TGG | 0.555619 | 3.4:-77523200 | None:intergenic |
| AATCCAAGGATGCAAAAGAA+TGG | 0.566760 | 3.4:+77525079 | MS.gene044303:CDS |
| CAAGGATGCAAAAGAATGGT+AGG | 0.567010 | 3.4:+77525083 | MS.gene044303:CDS |
| CTGCTGACTTCATGAATCCA+AGG | 0.568200 | 3.4:+77525065 | MS.gene044303:CDS |
| TCCAATATATCTCTTCTACT+AGG | 0.568292 | 3.4:+77525118 | MS.gene044303:CDS |
| TTCTTCATTCTCCACGTCTG+GGG | 0.569832 | 3.4:-77523495 | None:intergenic |
| TGGCTATGTGCACCGCTATG+GGG | 0.578981 | 3.4:+77523387 | MS.gene044303:CDS |
| ACTTGGAAGTTGTATAACTC+AGG | 0.582307 | 3.4:+77523964 | MS.gene044303:CDS |
| TCTTCAATGCAGCTTCAGCT+GGG | 0.586228 | 3.4:+77525008 | MS.gene044303:CDS |
| CAAGGATGTTCGTTTAAACA+AGG | 0.587088 | 3.4:-77523338 | None:intergenic |
| TTTGCTTTGACTACTCCAGT+AGG | 0.595259 | 3.4:+77524914 | MS.gene044303:CDS |
| CCATTATTCTAAAAGGGCAC+CGG | 0.607376 | 3.4:+77523451 | MS.gene044303:CDS |
| AAAGTCAACGCAGCTACCAA+TGG | 0.608393 | 3.4:-77523917 | None:intergenic |
| AAGTCAGGCAACCCCAGACG+TGG | 0.622416 | 3.4:+77523484 | MS.gene044303:CDS |
| TTGGGACTATACAAAGAATG+AGG | 0.625008 | 3.4:-77523052 | None:intergenic |
| TGTTTAAACGAACATCCTTG+GGG | 0.637545 | 3.4:+77523341 | MS.gene044303:CDS |
| GTATCACTTTGCCAAGAAGT+GGG | 0.638859 | 3.4:-77523199 | None:intergenic |
| TTCGTCACATGTGCACTCTG+CGG | 0.662154 | 3.4:-77523084 | None:intergenic |
| ATGGTTCTGAAAATAAGCAG+TGG | 0.668019 | 3.4:-77523432 | None:intergenic |
| GTGAATGGAAAATCACCCCA+AGG | 0.670551 | 3.4:-77523356 | None:intergenic |
| ACCGGTTGCCAAAATCACAC+CGG | 0.684552 | 3.4:-77523273 | None:intergenic |
| GCATCACATAGTCATGCACA+TGG | 0.717102 | 3.4:+77523539 | MS.gene044303:CDS |
| AACCATAAGAGTCCCCATAG+CGG | 0.744809 | 3.4:-77523399 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAAAAATATATCTTTTTC+AGG | - | chr3.4:77523236-77523255 | None:intergenic | 10.0% |
| !!! | TAAAAAATATATCTTTTTCA+GGG | - | chr3.4:77523235-77523254 | None:intergenic | 10.0% |
| !!! | TGAAATTTTTTATTTGTATA+TGG | - | chr3.4:77524724-77524743 | None:intergenic | 10.0% |
| !! | ATTCTTCTTTCTTAATTAAT+CGG | + | chr3.4:77524531-77524550 | MS.gene044303:intron | 15.0% |
| !!! | TTTTTTTTTATAATAGTGAC+CGG | + | chr3.4:77524116-77524135 | MS.gene044303:intron | 15.0% |
| !!! | TTTTTTTTTGAGTTAATCAT+AGG | + | chr3.4:77523814-77523833 | MS.gene044303:intron | 15.0% |
| !! | AGTTCAACATTTATATTTCA+AGG | - | chr3.4:77523763-77523782 | None:intergenic | 20.0% |
| !! | GAATTGTGAAATATTAACTA+TGG | + | chr3.4:77524226-77524245 | MS.gene044303:intron | 20.0% |
| !! | TTTATTTGTATATGGAGATT+CGG | - | chr3.4:77524716-77524735 | None:intergenic | 20.0% |
| !!! | TTTTTGTTTATAATAGTGAC+CGG | - | chr3.4:77524007-77524026 | None:intergenic | 20.0% |
| !!! | TTTTTTTTATAATAGTGACC+GGG | + | chr3.4:77524117-77524136 | MS.gene044303:intron | 20.0% |
| ! | AACATATACAACAACAAACA+AGG | - | chr3.4:77524405-77524424 | None:intergenic | 25.0% |
| ! | AAGAATGCATACTAAAAAAG+CGG | - | chr3.4:77524517-77524536 | None:intergenic | 25.0% |
| ! | AATGATTGCACTTTCAATTA+AGG | - | chr3.4:77524848-77524867 | None:intergenic | 25.0% |
| ! | ACATATACAACAACAAACAA+GGG | - | chr3.4:77524404-77524423 | None:intergenic | 25.0% |
| ! | CAGGATTTCAAATATAAGTA+CGG | + | chr3.4:77524251-77524270 | MS.gene044303:intron | 25.0% |
| ! | TGAAATATTAACTATGGATC+AGG | + | chr3.4:77524232-77524251 | MS.gene044303:intron | 25.0% |
| ! | TTCAGAACCATTATTCTAAA+AGG | + | chr3.4:77523444-77523463 | MS.gene044303:CDS | 25.0% |
| !! | TCAGAACCATTATTCTAAAA+GGG | + | chr3.4:77523445-77523464 | MS.gene044303:CDS | 25.0% |
| !!! | TGTCTTTTCGTTACTTTTTT+GGG | + | chr3.4:77524480-77524499 | MS.gene044303:intron | 25.0% |
| !!! | TTGTCTTTTCGTTACTTTTT+TGG | + | chr3.4:77524479-77524498 | MS.gene044303:intron | 25.0% |
| !!! | TTTTTTTATAATAGTGACCG+GGG | + | chr3.4:77524118-77524137 | MS.gene044303:intron | 25.0% |
| AACCAAATCAAACTCATGAA+CGG | - | chr3.4:77524201-77524220 | None:intergenic | 30.0% | |
| AGTCTATCAATTACAGTCAT+GGG | + | chr3.4:77524884-77524903 | MS.gene044303:CDS | 30.0% | |
| ATATAAGTACGGTGAACTAT+TGG | + | chr3.4:77524262-77524281 | MS.gene044303:intron | 30.0% | |
| ATATTAGTTGCAAGTGCAAT+CGG | + | chr3.4:77523167-77523186 | MS.gene044303:CDS | 30.0% | |
| ATGTCAAACTCTTTGTTCTT+TGG | + | chr3.4:77523027-77523046 | MS.gene044303:CDS | 30.0% | |
| ATTGTTCACTCTGTTATCAT+AGG | + | chr3.4:77523854-77523873 | MS.gene044303:CDS | 30.0% | |
| CTTTCTTAATTAATCGGTGA+AGG | + | chr3.4:77524537-77524556 | MS.gene044303:intron | 30.0% | |
| GAAGATTCCTTCAACAATAA+GGG | - | chr3.4:77524993-77525012 | None:intergenic | 30.0% | |
| GGTGATTATTGAATTTCTCA+CGG | - | chr3.4:77524688-77524707 | None:intergenic | 30.0% | |
| GTTATCATAGGAATTTCTCT+AGG | + | chr3.4:77523866-77523885 | MS.gene044303:CDS | 30.0% | |
| TCCAATATATCTCTTCTACT+AGG | + | chr3.4:77525118-77525137 | MS.gene044303:CDS | 30.0% | |
| TCCTAGTAGAAGAGATATAT+TGG | - | chr3.4:77525122-77525141 | None:intergenic | 30.0% | |
| TGAAGATTCCTTCAACAATA+AGG | - | chr3.4:77524994-77525013 | None:intergenic | 30.0% | |
| TTGTTTAAACGAACATCCTT+GGG | + | chr3.4:77523340-77523359 | MS.gene044303:CDS | 30.0% | |
| ! | ACTTTTCATCAGTTCTTTGA+AGG | + | chr3.4:77523935-77523954 | MS.gene044303:CDS | 30.0% |
| ! | TTTGAGTTAATCATAGGTGT+TGG | + | chr3.4:77523820-77523839 | MS.gene044303:intron | 30.0% |
| !!! | TTTTTTATAATAGTGACCGG+GGG | + | chr3.4:77524119-77524138 | MS.gene044303:intron | 30.0% |
| AAGAATGGTAGGCTTCAATT+TGG | + | chr3.4:77525094-77525113 | MS.gene044303:CDS | 35.0% | |
| AATCCAAGGATGCAAAAGAA+TGG | + | chr3.4:77525079-77525098 | MS.gene044303:CDS | 35.0% | |
| ACTTGGAAGTTGTATAACTC+AGG | + | chr3.4:77523964-77523983 | MS.gene044303:CDS | 35.0% | |
| AGCTGGGATCTTAATCTATA+TGG | + | chr3.4:77525024-77525043 | MS.gene044303:CDS | 35.0% | |
| ATCAGAACTTCTTCGTCATA+GGG | + | chr3.4:77523583-77523602 | MS.gene044303:CDS | 35.0% | |
| CAAGGATGTTCGTTTAAACA+AGG | - | chr3.4:77523341-77523360 | None:intergenic | 35.0% | |
| CACCAAACAAACAAATACAC+TGG | - | chr3.4:77524381-77524400 | None:intergenic | 35.0% | |
| CTGGTCATAAATCACTTGAA+AGG | - | chr3.4:77524362-77524381 | None:intergenic | 35.0% | |
| CTTGTTTAAACGAACATCCT+TGG | + | chr3.4:77523339-77523358 | MS.gene044303:CDS | 35.0% | |
| GACCAGTGTATTTGTTTGTT+TGG | + | chr3.4:77524376-77524395 | MS.gene044303:intron | 35.0% | |
| GAGTCTATCAATTACAGTCA+TGG | + | chr3.4:77524883-77524902 | MS.gene044303:CDS | 35.0% | |
| GGTATATCATATACACCATC+CGG | + | chr3.4:77523985-77524004 | MS.gene044303:intron | 35.0% | |
| TATGTCTCTTCTAGCCAAAT+GGG | + | chr3.4:77525150-77525169 | MS.gene044303:CDS | 35.0% | |
| TCCTAAAACTGTAAGACCAT+TGG | + | chr3.4:77523901-77523920 | MS.gene044303:CDS | 35.0% | |
| TGACGAAGAAGATGAAGAAA+GGG | + | chr3.4:77523100-77523119 | MS.gene044303:CDS | 35.0% | |
| TGCACATGGTCATATTTCTT+TGG | + | chr3.4:77523553-77523572 | MS.gene044303:CDS | 35.0% | |
| TGTTTAAACGAACATCCTTG+GGG | + | chr3.4:77523341-77523360 | MS.gene044303:CDS | 35.0% | |
| TGTTTATAATAGTGACCGGA+TGG | - | chr3.4:77524003-77524022 | None:intergenic | 35.0% | |
| TTGGGACTATACAAAGAATG+AGG | - | chr3.4:77523055-77523074 | None:intergenic | 35.0% | |
| ! | ATTGAAAGTGCAATCATTGC+AGG | + | chr3.4:77524850-77524869 | MS.gene044303:intron | 35.0% |
| ! | TAGGAATAGGAATTGGCTTA+GGG | + | chr3.4:77524933-77524952 | MS.gene044303:CDS | 35.0% |
| ! | TATTTTGTAGCGTAGAGCTT+TGG | - | chr3.4:77523132-77523151 | None:intergenic | 35.0% |
| ! | TTTTTATAATAGTGACCGGG+GGG | + | chr3.4:77524120-77524139 | MS.gene044303:intron | 35.0% |
| !! | ACCAATGGTCTTACAGTTTT+AGG | - | chr3.4:77523905-77523924 | None:intergenic | 35.0% |
| !! | ATGGTTCTGAAAATAAGCAG+TGG | - | chr3.4:77523435-77523454 | None:intergenic | 35.0% |
| !! | GTAAGATTCTCAAAAGCATC+AGG | - | chr3.4:77523314-77523333 | None:intergenic | 35.0% |
| !! | TAATCATAGGTGTTGGAGTT+GGG | + | chr3.4:77523827-77523846 | MS.gene044303:intron | 35.0% |
| !! | TTAATCATAGGTGTTGGAGT+TGG | + | chr3.4:77523826-77523845 | MS.gene044303:intron | 35.0% |
| !!! | CTTTTCGTTACTTTTTTGGG+TGG | + | chr3.4:77524483-77524502 | MS.gene044303:intron | 35.0% |
| !!! | TTTTCCATTCACTGGTTTTG+TGG | + | chr3.4:77523367-77523386 | MS.gene044303:CDS | 35.0% |
| AAGCCAATTCCTATTCCTAC+TGG | - | chr3.4:77524932-77524951 | None:intergenic | 40.0% | |
| ACTCCAGTAGGAATAGGAAT+TGG | + | chr3.4:77524926-77524945 | MS.gene044303:CDS | 40.0% | |
| ACTTCTTGGCAAAGTGATAC+CGG | + | chr3.4:77523202-77523221 | MS.gene044303:CDS | 40.0% | |
| ATAGCCACAAAACCAGTGAA+TGG | - | chr3.4:77523374-77523393 | None:intergenic | 40.0% | |
| ATATCTCTTCTACTAGGAGC+TGG | + | chr3.4:77525124-77525143 | MS.gene044303:CDS | 40.0% | |
| CAAGGATGCAAAAGAATGGT+AGG | + | chr3.4:77525083-77525102 | MS.gene044303:CDS | 40.0% | |
| CATCAGAACTTCTTCGTCAT+AGG | + | chr3.4:77523582-77523601 | MS.gene044303:CDS | 40.0% | |
| GACCGTTCATGAGTTTGATT+TGG | + | chr3.4:77524196-77524215 | MS.gene044303:intron | 40.0% | |
| GTATCACTTTGCCAAGAAGT+GGG | - | chr3.4:77523202-77523221 | None:intergenic | 40.0% | |
| GTATGTCTCTTCTAGCCAAA+TGG | + | chr3.4:77525149-77525168 | MS.gene044303:CDS | 40.0% | |
| GTGACGAAGAAGATGAAGAA+AGG | + | chr3.4:77523099-77523118 | MS.gene044303:CDS | 40.0% | |
| TGATATATTTGTACACCCCC+CGG | - | chr3.4:77524138-77524157 | None:intergenic | 40.0% | |
| TTGACTACTCCAGTAGGAAT+AGG | + | chr3.4:77524920-77524939 | MS.gene044303:CDS | 40.0% | |
| TTTGCTTTGACTACTCCAGT+AGG | + | chr3.4:77524914-77524933 | MS.gene044303:CDS | 40.0% | |
| ! | AGGAAGCACATGAATGAAAC+CGG | - | chr3.4:77523294-77523313 | None:intergenic | 40.0% |
| ! | ATCATCAAAGCATTTGCTGC+CGG | + | chr3.4:77523254-77523273 | MS.gene044303:CDS | 40.0% |
| ! | CATCAGTTCTTTGAAGGCAT+GGG | + | chr3.4:77523941-77523960 | MS.gene044303:CDS | 40.0% |
| ! | CCATTATTCTAAAAGGGCAC+CGG | + | chr3.4:77523451-77523470 | MS.gene044303:CDS | 40.0% |
| ! | CTACCATTCTTTTGCATCCT+TGG | - | chr3.4:77525085-77525104 | None:intergenic | 40.0% |
| ! | GTAGGAATAGGAATTGGCTT+AGG | + | chr3.4:77524932-77524951 | MS.gene044303:CDS | 40.0% |
| ! | GTATATGGAGATTCGGTTGA+AGG | - | chr3.4:77524709-77524728 | None:intergenic | 40.0% |
| ! | TCATCAGTTCTTTGAAGGCA+TGG | + | chr3.4:77523940-77523959 | MS.gene044303:CDS | 40.0% |
| AAAGTCAACGCAGCTACCAA+TGG | - | chr3.4:77523920-77523939 | None:intergenic | 45.0% | |
| AACCATAAGAGTCCCCATAG+CGG | - | chr3.4:77523402-77523421 | None:intergenic | 45.0% | |
| ACTCTGCGGCTATTAGAGTT+GGG | - | chr3.4:77523073-77523092 | None:intergenic | 45.0% | |
| ATCTTCAATGCAGCTTCAGC+TGG | + | chr3.4:77525007-77525026 | MS.gene044303:CDS | 45.0% | |
| CCAACTGCCCTTATTGTTGA+AGG | + | chr3.4:77524983-77525002 | MS.gene044303:CDS | 45.0% | |
| CCTTCAACAATAAGGGCAGT+TGG | - | chr3.4:77524986-77525005 | None:intergenic | 45.0% | |
| GCATCACATAGTCATGCACA+TGG | + | chr3.4:77523539-77523558 | MS.gene044303:CDS | 45.0% | |
| GGTATCACTTTGCCAAGAAG+TGG | - | chr3.4:77523203-77523222 | None:intergenic | 45.0% | |
| GTGAATGGAAAATCACCCCA+AGG | - | chr3.4:77523359-77523378 | None:intergenic | 45.0% | |
| GTTCTTCATTCTCCACGTCT+GGG | - | chr3.4:77523499-77523518 | None:intergenic | 45.0% | |
| TCGTCATAGGGTCATATCAC+AGG | + | chr3.4:77523595-77523614 | MS.gene044303:CDS | 45.0% | |
| TCTTCAATGCAGCTTCAGCT+GGG | + | chr3.4:77525008-77525027 | MS.gene044303:CDS | 45.0% | |
| TGTTCTTCATTCTCCACGTC+TGG | - | chr3.4:77523500-77523519 | None:intergenic | 45.0% | |
| TTCTTCATTCTCCACGTCTG+GGG | - | chr3.4:77523498-77523517 | None:intergenic | 45.0% | |
| ! | TGGGGTGATTTTCCATTCAC+TGG | + | chr3.4:77523359-77523378 | MS.gene044303:CDS | 45.0% |
| ! | TTCTTTGAAGGCATGGGACT+TGG | + | chr3.4:77523947-77523966 | MS.gene044303:CDS | 45.0% |
| !! | ATTTGCTGCCGGTGTGATTT+TGG | + | chr3.4:77523265-77523284 | MS.gene044303:CDS | 45.0% |
| !! | CTGCTGACTTCATGAATCCA+AGG | + | chr3.4:77525065-77525084 | MS.gene044303:CDS | 45.0% |
| !!! | CCGGTGCCCTTTTAGAATAA+TGG | - | chr3.4:77523454-77523473 | None:intergenic | 45.0% |
| !!! | TCTTTTTCAGGGCTTAACGC+CGG | - | chr3.4:77523224-77523243 | None:intergenic | 45.0% |
| ACCGGTTGCCAAAATCACAC+CGG | - | chr3.4:77523276-77523295 | None:intergenic | 50.0% | |
| CACTCTGCGGCTATTAGAGT+TGG | - | chr3.4:77523074-77523093 | None:intergenic | 50.0% | |
| GGTGTTTGTCTCCCACTTCT+TGG | + | chr3.4:77523188-77523207 | MS.gene044303:CDS | 50.0% | |
| TTCGTCACATGTGCACTCTG+CGG | - | chr3.4:77523087-77523106 | None:intergenic | 50.0% | |
| CACCGCTATGGGGACTCTTA+TGG | + | chr3.4:77523397-77523416 | MS.gene044303:CDS | 55.0% | |
| GCCTGACTTTCAACCTGTGC+CGG | - | chr3.4:77523473-77523492 | None:intergenic | 55.0% | |
| GTGGCTATGTGCACCGCTAT+GGG | + | chr3.4:77523386-77523405 | MS.gene044303:CDS | 55.0% | |
| TGGCTATGTGCACCGCTATG+GGG | + | chr3.4:77523387-77523406 | MS.gene044303:CDS | 55.0% | |
| TGTGGCTATGTGCACCGCTA+TGG | + | chr3.4:77523385-77523404 | MS.gene044303:CDS | 55.0% | |
| ! | ACCGGCACAGGTTGAAAGTC+AGG | + | chr3.4:77523469-77523488 | MS.gene044303:CDS | 55.0% |
| !! | GCCGGTGTGATTTTGGCAAC+CGG | + | chr3.4:77523272-77523291 | MS.gene044303:CDS | 55.0% |
| !! | TTCTAAAAGGGCACCGGCAC+AGG | + | chr3.4:77523457-77523476 | MS.gene044303:CDS | 55.0% |
| AAGTCAGGCAACCCCAGACG+TGG | + | chr3.4:77523484-77523503 | MS.gene044303:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 77523011 | 77525177 | 77523011 | ID=MS.gene044303 |
| chr3.4 | mRNA | 77523011 | 77525177 | 77523011 | ID=MS.gene044303.t1;Parent=MS.gene044303 |
| chr3.4 | exon | 77523011 | 77523616 | 77523011 | ID=MS.gene044303.t1.exon1;Parent=MS.gene044303.t1 |
| chr3.4 | CDS | 77523011 | 77523616 | 77523011 | ID=cds.MS.gene044303.t1;Parent=MS.gene044303.t1 |
| chr3.4 | exon | 77523836 | 77523985 | 77523836 | ID=MS.gene044303.t1.exon2;Parent=MS.gene044303.t1 |
| chr3.4 | CDS | 77523836 | 77523985 | 77523836 | ID=cds.MS.gene044303.t1;Parent=MS.gene044303.t1 |
| chr3.4 | exon | 77524872 | 77525177 | 77524872 | ID=MS.gene044303.t1.exon3;Parent=MS.gene044303.t1 |
| chr3.4 | CDS | 77524872 | 77525177 | 77524872 | ID=cds.MS.gene044303.t1;Parent=MS.gene044303.t1 |
| Gene Sequence |
| Protein sequence |
