Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044778.t1 | XP_013455794.1 | 100 | 139 | 0 | 0 | 1 | 139 | 1 | 139 | 1.80E-76 | 295 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044778.t1 | Q949Q5 | 74.1 | 143 | 28 | 4 | 1 | 137 | 1 | 140 | 8.1e-54 | 211.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044778.t1 | I3SE13 | 100.0 | 139 | 0 | 0 | 1 | 139 | 1 | 139 | 1.3e-76 | 295.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene025854 | MS.gene044778 | PPI |
| MS.gene044778 | MS.gene024386 | PPI |
| MS.gene044778 | MS.gene22752 | PPI |
| MS.gene039151 | MS.gene044778 | PPI |
| MS.gene040618 | MS.gene044778 | PPI |
| MS.gene054642 | MS.gene044778 | PPI |
| MS.gene38715 | MS.gene044778 | PPI |
| MS.gene012982 | MS.gene044778 | PPI |
| MS.gene48506 | MS.gene044778 | PPI |
| MS.gene050699 | MS.gene044778 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044778.t1 | MTR_4g052420 | 100.000 | 139 | 0 | 0 | 1 | 139 | 1 | 139 | 1.04e-99 | 282 |
| MS.gene044778.t1 | MTR_4g052420 | 99.281 | 139 | 0 | 1 | 1 | 139 | 1 | 138 | 3.23e-97 | 276 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044778.t1 | AT1G08380 | 74.126 | 143 | 28 | 4 | 1 | 137 | 1 | 140 | 4.11e-67 | 199 |
Find 49 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTTCAATGTGATTGGATT+TGG | 0.225162 | 4.1:+45662568 | MS.gene044778:CDS |
| CTGTTCATCTCTCTCACTTT+TGG | 0.231594 | 4.1:+45664696 | MS.gene044778:CDS |
| TCCTTCCTTTGAAACCAATT+TGG | 0.248618 | 4.1:-45664719 | None:intergenic |
| CTGCTCTTACTTCACCCTTC+TGG | 0.272395 | 4.1:+45662701 | MS.gene044778:CDS |
| ATGGCTGATCTGTTGGCACC+TGG | 0.325103 | 4.1:+45664671 | MS.gene044778:CDS |
| GTGATTGGATTTGGGTTGAT+AGG | 0.341850 | 4.1:+45662577 | MS.gene044778:CDS |
| ATTTCAATGTGATTGGATTT+GGG | 0.350561 | 4.1:+45662569 | MS.gene044778:CDS |
| AGGAGGGATTTCAATGTGAT+TGG | 0.352292 | 4.1:+45662562 | MS.gene044778:CDS |
| GAAGTAAGAGCAGGAGGAGT+AGG | 0.358016 | 4.1:-45662691 | None:intergenic |
| TTGGATTTGGGTTGATAGGT+TGG | 0.379649 | 4.1:+45662581 | MS.gene044778:CDS |
| CCCTCCTCAGCCAATCCCTT+TGG | 0.395602 | 4.1:-45662546 | None:intergenic |
| TCTATAGCTGGTATGCTTGA+TGG | 0.430936 | 4.1:-45662610 | None:intergenic |
| AAGTAAGAGCAGGAGGAGTA+GGG | 0.437703 | 4.1:-45662690 | None:intergenic |
| TGGCTGATCTGTTGGCACCT+GGG | 0.454791 | 4.1:+45664672 | MS.gene044778:CDS |
| GCCAAATTGGTTTCAAAGGA+AGG | 0.457172 | 4.1:+45664718 | MS.gene044778:CDS |
| ATTTGGGTTGATAGGTTGGT+TGG | 0.470446 | 4.1:+45662585 | MS.gene044778:CDS |
| CAAGCTATGGCACTTGGAAA+TGG | 0.471234 | 4.1:+45662182 | MS.gene044778:CDS |
| AGTGCCATAGCTTGCTTCAA+AGG | 0.477357 | 4.1:-45662173 | None:intergenic |
| TTGAAGCAAGCTATGGCACT+TGG | 0.478115 | 4.1:+45662176 | MS.gene044778:CDS |
| ACAACCTTTCCAACCGTCCT+AGG | 0.481448 | 4.1:+45662012 | MS.gene044778:CDS |
| GGCTGATCTGTTGGCACCTG+GGG | 0.482909 | 4.1:+45664673 | MS.gene044778:CDS |
| TCAAGCATACCAGCTATAGA+TGG | 0.485882 | 4.1:+45662613 | MS.gene044778:CDS |
| TGAAACCTCAAGTGATTGCT+AGG | 0.491174 | 4.1:+45662147 | MS.gene044778:CDS |
| TTTGGCCAAATTGGTTTCAA+AGG | 0.491678 | 4.1:+45664714 | MS.gene044778:CDS |
| TCCAAAGGGATTGGCTGAGG+AGG | 0.519342 | 4.1:+45662545 | MS.gene044778:CDS |
| GGTGCATCACGTCTCACCTC+AGG | 0.521677 | 4.1:+45662042 | MS.gene044778:CDS |
| GCAGGTTATGGCTGATCTGT+TGG | 0.521700 | 4.1:+45664664 | MS.gene044778:intron |
| TGAGAGAGATGAACAGCCCC+AGG | 0.530883 | 4.1:-45664689 | None:intergenic |
| CCAACCGTCCTAGGAATGGC+TGG | 0.539875 | 4.1:+45662021 | MS.gene044778:CDS |
| CCAGCCATTCCTAGGACGGT+TGG | 0.541005 | 4.1:-45662021 | None:intergenic |
| GTGATGCACCAGCCATTCCT+AGG | 0.542585 | 4.1:-45662029 | None:intergenic |
| ATAGATGGTAAAAGTCTGAC+TGG | 0.543316 | 4.1:+45662628 | MS.gene044778:CDS |
| ATAGTAGCTTCCAAAGGGAT+TGG | 0.543759 | 4.1:+45662536 | MS.gene044778:intron |
| GGATTCCTAGCAATCACTTG+AGG | 0.550278 | 4.1:-45662152 | None:intergenic |
| GCTATGGCACTTGGAAATGG+TGG | 0.550754 | 4.1:+45662185 | MS.gene044778:CDS |
| CCAAAGGGATTGGCTGAGGA+GGG | 0.551644 | 4.1:+45662546 | MS.gene044778:CDS |
| CAGAAGGGTGAAGTAAGAGC+AGG | 0.557629 | 4.1:-45662700 | None:intergenic |
| CTTTCCAACCGTCCTAGGAA+TGG | 0.566203 | 4.1:+45662017 | MS.gene044778:CDS |
| GGTGTATAGTAGCTTCCAAA+GGG | 0.571319 | 4.1:+45662531 | MS.gene044778:intron |
| CATTCCTAGGACGGTTGGAA+AGG | 0.571757 | 4.1:-45662016 | None:intergenic |
| GAATCCTTTGAAGCAAGCTA+TGG | 0.575832 | 4.1:+45662169 | MS.gene044778:CDS |
| GCTTCCAAAGGGATTGGCTG+AGG | 0.582802 | 4.1:+45662542 | MS.gene044778:CDS |
| TGGTGTATAGTAGCTTCCAA+AGG | 0.596452 | 4.1:+45662530 | MS.gene044778:intron |
| CTATGGCACTTGGAAATGGT+GGG | 0.605091 | 4.1:+45662186 | MS.gene044778:CDS |
| AAGGGTGAAGTAAGAGCAGG+AGG | 0.608022 | 4.1:-45662697 | None:intergenic |
| TGCACCAGCCATTCCTAGGA+CGG | 0.612860 | 4.1:-45662025 | None:intergenic |
| GAAATGGTGGGAGAGTTACA+TGG | 0.656018 | 4.1:+45662198 | MS.gene044778:CDS |
| TGGTTTCAAAGGAAGGACTG+AGG | 0.666404 | 4.1:+45664725 | MS.gene044778:CDS |
| ATGAAAATGACTAACCAGAA+GGG | 0.671062 | 4.1:-45662715 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGATCAAATATATAAATTAT+TGG | + | chr4.1:45662847-45662866 | MS.gene044778:intron | 10.0% |
| !! | TTAAAAAATTTAAGTGTTTA+AGG | + | chr4.1:45663344-45663363 | MS.gene044778:intron | 10.0% |
| !!! | ATAAGTAATTTTTTTTTGTA+GGG | + | chr4.1:45663405-45663424 | MS.gene044778:intron | 10.0% |
| !!! | TATAAGTAATTTTTTTTTGT+AGG | + | chr4.1:45663404-45663423 | MS.gene044778:intron | 10.0% |
| !!! | TTCATTTTATTTATTTAAGT+CGG | + | chr4.1:45662759-45662778 | MS.gene044778:intron | 10.0% |
| !!! | TTTTATTTTTATTTTTATGG+TGG | - | chr4.1:45663903-45663922 | None:intergenic | 10.0% |
| !! | AAACCTATTAAAATTAAGTA+AGG | + | chr4.1:45663434-45663453 | MS.gene044778:intron | 15.0% |
| !! | AAATTAAATCCATAAAGTTT+AGG | + | chr4.1:45664064-45664083 | MS.gene044778:intron | 15.0% |
| !! | AAGCATAAATTAAACAAATT+TGG | - | chr4.1:45663094-45663113 | None:intergenic | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+AGG | - | chr4.1:45663022-45663041 | None:intergenic | 15.0% |
| !! | AGATATAAGTAACAAAAATA+TGG | - | chr4.1:45663213-45663232 | None:intergenic | 15.0% |
| !! | AGTAAAATAAAGAAAAGAAA+AGG | + | chr4.1:45664468-45664487 | MS.gene044778:intron | 15.0% |
| !!! | AAACAAAATTTATTTTAGCA+GGG | + | chr4.1:45663373-45663392 | MS.gene044778:intron | 15.0% |
| !!! | AAATCTGGTTTTTTTATTAA+TGG | + | chr4.1:45664208-45664227 | MS.gene044778:intron | 15.0% |
| !!! | AATCTGGTTTTTTTATTAAT+GGG | + | chr4.1:45664209-45664228 | MS.gene044778:intron | 15.0% |
| !!! | AATTTTTGCGATATTTTTTT+CGG | - | chr4.1:45663178-45663197 | None:intergenic | 15.0% |
| !!! | TAAACAAAATTTATTTTAGC+AGG | + | chr4.1:45663372-45663391 | MS.gene044778:intron | 15.0% |
| !!! | TATGATTATTTTCATTAACT+TGG | - | chr4.1:45663591-45663610 | None:intergenic | 15.0% |
| !!! | TCCATATGAATATTTATTTT+CGG | + | chr4.1:45662276-45662295 | MS.gene044778:intron | 15.0% |
| !!! | TTTAATTGTAATTTGTTTGT+AGG | + | chr4.1:45662119-45662138 | MS.gene044778:intron | 15.0% |
| !!! | TTTTTTTTTCTAACAATCTA+TGG | - | chr4.1:45664045-45664064 | None:intergenic | 15.0% |
| !! | AAAGAACTTGTGAATTAAAT+GGG | - | chr4.1:45663540-45663559 | None:intergenic | 20.0% |
| !! | AAAGTAATGAAAATATGAAG+TGG | + | chr4.1:45663663-45663682 | MS.gene044778:intron | 20.0% |
| !! | AAATAAATTGTATCCATTGT+TGG | - | chr4.1:45663995-45664014 | None:intergenic | 20.0% |
| !! | GAACTTTAACAAAAAAAATC+TGG | + | chr4.1:45664193-45664212 | MS.gene044778:intron | 20.0% |
| !! | TAAAGAACTTGTGAATTAAA+TGG | - | chr4.1:45663541-45663560 | None:intergenic | 20.0% |
| !! | TGCTAATGAGAAATTATAAA+TGG | + | chr4.1:45664167-45664186 | MS.gene044778:intron | 20.0% |
| !!! | AAATGCGTTAATTATGTTTT+TGG | + | chr4.1:45662964-45662983 | MS.gene044778:intron | 20.0% |
| !!! | AAATTGGAAGGTTTTTTTTT+TGG | - | chr4.1:45663509-45663528 | None:intergenic | 20.0% |
| !!! | AATTGGAAGGTTTTTTTTTT+GGG | - | chr4.1:45663508-45663527 | None:intergenic | 20.0% |
| !!! | ACAATGGATACAATTTATTT+TGG | + | chr4.1:45663995-45664014 | MS.gene044778:intron | 20.0% |
| !!! | AGTCCTTACTTAATTTTAAT+AGG | - | chr4.1:45663035-45663016 | None:intergenic | 20.0% |
| !!! | ATTTTTATTTTTATGGTGGT+CGG | - | chr4.1:45663899-45663918 | None:intergenic | 20.0% |
| !!! | CATTATTTTGTGAATTGTTA+TGG | + | chr4.1:45662493-45662512 | MS.gene044778:intron | 20.0% |
| !!! | CTATAAGATTGGTTTTTATA+TGG | + | chr4.1:45662230-45662249 | MS.gene044778:intron | 20.0% |
| !!! | GGTAATTTTTACTATAAGAT+TGG | + | chr4.1:45662219-45662238 | MS.gene044778:intron | 20.0% |
| !!! | GTTTTTCAACAATTTTTTAC+AGG | + | chr4.1:45663124-45663143 | MS.gene044778:intron | 20.0% |
| !!! | TAAATGGGGTATTAAAAAAT+TGG | - | chr4.1:45663525-45663544 | None:intergenic | 20.0% |
| !!! | TTTTGGGTTAAATATGTTTT+TGG | - | chr4.1:45663492-45663511 | None:intergenic | 20.0% |
| ! | AAGAACTTGTGAATTAAATG+GGG | - | chr4.1:45663539-45663558 | None:intergenic | 25.0% |
| ! | AAGTAAGGACTAAACTTATA+AGG | - | chr4.1:45663007-45663026 | None:intergenic | 25.0% |
| ! | ATATTTGATCATTCCTTACA+TGG | - | chr4.1:45662838-45662857 | None:intergenic | 25.0% |
| ! | ATTTCAATGTGATTGGATTT+GGG | + | chr4.1:45662569-45662588 | MS.gene044778:CDS | 25.0% |
| ! | GCCGAAAATAAATATTCATA+TGG | - | chr4.1:45662280-45662299 | None:intergenic | 25.0% |
| ! | GTGTTAAGAACGTTATTAAA+AGG | + | chr4.1:45663148-45663167 | MS.gene044778:intron | 25.0% |
| ! | TAATGAAAATATGAAGTGGA+AGG | + | chr4.1:45663667-45663686 | MS.gene044778:intron | 25.0% |
| ! | TATAAATTATTGGCATCTAG+AGG | + | chr4.1:45662857-45662876 | MS.gene044778:intron | 25.0% |
| ! | TCATATTTCACGTGATTAAA+CGG | - | chr4.1:45662382-45662401 | None:intergenic | 25.0% |
| ! | TCTAACAGACAATTAAAACA+AGG | + | chr4.1:45662913-45662932 | MS.gene044778:intron | 25.0% |
| ! | TTATTAGCACCTAAACTTTA+TGG | - | chr4.1:45664076-45664095 | None:intergenic | 25.0% |
| !! | GTAAAATTTTACACCAACAA+TGG | + | chr4.1:45663979-45663998 | MS.gene044778:intron | 25.0% |
| !! | TTCAAAAGCAGTTTTTGTTA+AGG | - | chr4.1:45664355-45664374 | None:intergenic | 25.0% |
| !!! | TTTTTATTTTTATGGTGGTC+GGG | - | chr4.1:45663898-45663917 | None:intergenic | 25.0% |
| ATGAAAATGACTAACCAGAA+GGG | - | chr4.1:45662718-45662737 | None:intergenic | 30.0% | |
| GATTTCAATGTGATTGGATT+TGG | + | chr4.1:45662568-45662587 | MS.gene044778:CDS | 30.0% | |
| GTCGGTAATTTCTAACAAAA+CGG | - | chr4.1:45664561-45664580 | None:intergenic | 30.0% | |
| TCAGTTTATATTACATCCGT+CGG | - | chr4.1:45664579-45664598 | None:intergenic | 30.0% | |
| TGAATTGTTATGGCATGTTA+TGG | + | chr4.1:45662503-45662522 | MS.gene044778:intron | 30.0% | |
| ! | CAAGTTTAGAACACTATGAA+AGG | - | chr4.1:45663310-45663329 | None:intergenic | 30.0% |
| ! | TATAAGGTCGCAATTTTGTA+GGG | - | chr4.1:45662991-45663010 | None:intergenic | 30.0% |
| ! | TGGGGTATTAAAAAATTGGA+AGG | - | chr4.1:45663521-45663540 | None:intergenic | 30.0% |
| ! | TTATAAGGTCGCAATTTTGT+AGG | - | chr4.1:45662992-45663011 | None:intergenic | 30.0% |
| !! | GTTTTGTTAGAAATTACCGA+CGG | + | chr4.1:45664560-45664579 | MS.gene044778:intron | 30.0% |
| !! | TAGAAGATCGCCATTTTATA+GGG | + | chr4.1:45663465-45663484 | MS.gene044778:intron | 30.0% |
| !! | TTAGAAGATCGCCATTTTAT+AGG | + | chr4.1:45663464-45663483 | MS.gene044778:intron | 30.0% |
| !!! | TGTTTTTGGTCCCTATAAAA+TGG | - | chr4.1:45663478-45663497 | None:intergenic | 30.0% |
| !!! | TTCGGCTAGTTTTATAGTAT+AGG | + | chr4.1:45662294-45662313 | MS.gene044778:intron | 30.0% |
| !!! | TTTTATTTTTATGGTGGTCG+GGG | - | chr4.1:45663897-45663916 | None:intergenic | 30.0% |
| !!! | TTTTGCGATATTTTTTTCGG+AGG | - | chr4.1:45663175-45663194 | None:intergenic | 30.0% |
| AATCGGAACAAAACCATGTA+AGG | + | chr4.1:45662822-45662841 | MS.gene044778:intron | 35.0% | |
| ATAGATGGTAAAAGTCTGAC+TGG | + | chr4.1:45662628-45662647 | MS.gene044778:CDS | 35.0% | |
| ATCAATCCTACCGTCTAAAT+CGG | + | chr4.1:45662805-45662824 | MS.gene044778:intron | 35.0% | |
| ATGATGAATTGAGCAGGTTA+TGG | + | chr4.1:45664652-45664671 | MS.gene044778:intron | 35.0% | |
| GATGAAAATGACTAACCAGA+AGG | - | chr4.1:45662719-45662738 | None:intergenic | 35.0% | |
| GTGAGCTTGTCTTAGTAAAA+AGG | + | chr4.1:45663714-45663733 | MS.gene044778:intron | 35.0% | |
| GTTAATGATCATGATACCTG+AGG | - | chr4.1:45662061-45662080 | None:intergenic | 35.0% | |
| TCAAACATGATGAATTGAGC+AGG | + | chr4.1:45664646-45664665 | MS.gene044778:intron | 35.0% | |
| TTATGGCATGTTATGGCATA+TGG | + | chr4.1:45662510-45662529 | MS.gene044778:intron | 35.0% | |
| TTTCTAACAAAACGGTTCCA+TGG | - | chr4.1:45664553-45664572 | None:intergenic | 35.0% | |
| ! | AAGGAATCAGTTAGAGGTAT+TGG | + | chr4.1:45663686-45663705 | MS.gene044778:intron | 35.0% |
| ! | AGACTTTTACCATCTATAGC+TGG | - | chr4.1:45662625-45662644 | None:intergenic | 35.0% |
| ! | TTTGGCCAAATTGGTTTCAA+AGG | + | chr4.1:45664714-45664733 | MS.gene044778:CDS | 35.0% |
| !! | AGGAATCAGTTAGAGGTATT+GGG | + | chr4.1:45663687-45663706 | MS.gene044778:intron | 35.0% |
| !! | GGACTTTTCTTTGATAGCAT+TGG | + | chr4.1:45662649-45662668 | MS.gene044778:CDS | 35.0% |
| !! | TCCTTCCTTTGAAACCAATT+TGG | - | chr4.1:45664722-45664741 | None:intergenic | 35.0% |
| !!! | GAGTGCAGACATTTTTTGTA+GGG | - | chr4.1:45663051-45663070 | None:intergenic | 35.0% |
| !!! | TGAGTGCAGACATTTTTTGT+AGG | - | chr4.1:45663052-45663071 | None:intergenic | 35.0% |
| !!! | TGGTTTTGTTCCGATTTAGA+CGG | - | chr4.1:45662818-45662837 | None:intergenic | 35.0% |
| AAGTGGAAGGAATCAGTTAG+AGG | + | chr4.1:45663680-45663699 | MS.gene044778:intron | 40.0% | |
| AATGTCAAAGTTGTCCTCGT+GGG | + | chr4.1:45663817-45663836 | MS.gene044778:intron | 40.0% | |
| AGGAGGGATTTCAATGTGAT+TGG | + | chr4.1:45662562-45662581 | MS.gene044778:CDS | 40.0% | |
| ATAGTAGCTTCCAAAGGGAT+TGG | + | chr4.1:45662536-45662555 | MS.gene044778:intron | 40.0% | |
| GGTGTATAGTAGCTTCCAAA+GGG | + | chr4.1:45662531-45662550 | MS.gene044778:intron | 40.0% | |
| TAATGTCAAAGTTGTCCTCG+TGG | + | chr4.1:45663816-45663835 | MS.gene044778:intron | 40.0% | |
| TCAAGCATACCAGCTATAGA+TGG | + | chr4.1:45662613-45662632 | MS.gene044778:CDS | 40.0% | |
| TCTATAGCTGGTATGCTTGA+TGG | - | chr4.1:45662613-45662632 | None:intergenic | 40.0% | |
| TGAAACCTCAAGTGATTGCT+AGG | + | chr4.1:45662147-45662166 | MS.gene044778:CDS | 40.0% | |
| TGGTGTATAGTAGCTTCCAA+AGG | + | chr4.1:45662530-45662549 | MS.gene044778:intron | 40.0% | |
| TTTGTTCCGATTTAGACGGT+AGG | - | chr4.1:45662814-45662833 | None:intergenic | 40.0% | |
| ! | CTGTTCATCTCTCTCACTTT+TGG | + | chr4.1:45664696-45664715 | MS.gene044778:CDS | 40.0% |
| ! | GCCAAATTGGTTTCAAAGGA+AGG | + | chr4.1:45664718-45664737 | MS.gene044778:CDS | 40.0% |
| !! | ATTTGGGTTGATAGGTTGGT+TGG | + | chr4.1:45662585-45662604 | MS.gene044778:CDS | 40.0% |
| !! | GAATCCTTTGAAGCAAGCTA+TGG | + | chr4.1:45662169-45662188 | MS.gene044778:CDS | 40.0% |
| !! | GTGATTGGATTTGGGTTGAT+AGG | + | chr4.1:45662577-45662596 | MS.gene044778:CDS | 40.0% |
| !! | TCTCTCACTTTTGGCCAAAT+TGG | + | chr4.1:45664705-45664724 | MS.gene044778:CDS | 40.0% |
| !! | TTGGATTTGGGTTGATAGGT+TGG | + | chr4.1:45662581-45662600 | MS.gene044778:CDS | 40.0% |
| AAAACGGTTCCATGGTCTAG+CGG | - | chr4.1:45664545-45664564 | None:intergenic | 45.0% | |
| AAGTAAGAGCAGGAGGAGTA+GGG | - | chr4.1:45662693-45662712 | None:intergenic | 45.0% | |
| AGTAACCCGAGTTCAAGTCT+CGG | - | chr4.1:45664499-45664518 | None:intergenic | 45.0% | |
| CAAGCTATGGCACTTGGAAA+TGG | + | chr4.1:45662182-45662201 | MS.gene044778:CDS | 45.0% | |
| CTATGGCACTTGGAAATGGT+GGG | + | chr4.1:45662186-45662205 | MS.gene044778:CDS | 45.0% | |
| GGATTCCTAGCAATCACTTG+AGG | - | chr4.1:45662155-45662174 | None:intergenic | 45.0% | |
| TGGTTTCAAAGGAAGGACTG+AGG | + | chr4.1:45664725-45664744 | MS.gene044778:CDS | 45.0% | |
| TTGAAGCAAGCTATGGCACT+TGG | + | chr4.1:45662176-45662195 | MS.gene044778:CDS | 45.0% | |
| ! | GAAATGGTGGGAGAGTTACA+TGG | + | chr4.1:45662198-45662217 | MS.gene044778:CDS | 45.0% |
| ! | TGGGCTTATCTCAGTTGGTA+GGG | + | chr4.1:45663836-45663855 | MS.gene044778:intron | 45.0% |
| !! | AGTGCCATAGCTTGCTTCAA+AGG | - | chr4.1:45662176-45662195 | None:intergenic | 45.0% |
| !!! | AAACATTTTTTTTTTATTAA+TGG | + | chr4.1:45664121-45664140 | MS.gene044778:intron | 5.0% |
| !!! | AACATTTTTTTTTTATTAAT+GGG | + | chr4.1:45664122-45664141 | MS.gene044778:intron | 5.0% |
| !!! | TAGTTTTATTTTTATTTTTA+TGG | - | chr4.1:45663906-45663925 | None:intergenic | 5.0% |
| AAGGGTGAAGTAAGAGCAGG+AGG | - | chr4.1:45662700-45662719 | None:intergenic | 50.0% | |
| ACAACCTTTCCAACCGTCCT+AGG | + | chr4.1:45662012-45662031 | MS.gene044778:CDS | 50.0% | |
| ATGTCCTAACCGCTAGACCA+TGG | + | chr4.1:45664533-45664552 | MS.gene044778:intron | 50.0% | |
| CAGAAGGGTGAAGTAAGAGC+AGG | - | chr4.1:45662703-45662722 | None:intergenic | 50.0% | |
| CATTCCTAGGACGGTTGGAA+AGG | - | chr4.1:45662019-45662038 | None:intergenic | 50.0% | |
| CTGCTCTTACTTCACCCTTC+TGG | + | chr4.1:45662701-45662720 | MS.gene044778:CDS | 50.0% | |
| CTTTCCAACCGTCCTAGGAA+TGG | + | chr4.1:45662017-45662036 | MS.gene044778:CDS | 50.0% | |
| GAAGTAAGAGCAGGAGGAGT+AGG | - | chr4.1:45662694-45662713 | None:intergenic | 50.0% | |
| GAGACTTGAACTCGGGTTAC+TGG | + | chr4.1:45664498-45664517 | MS.gene044778:intron | 50.0% | |
| GCAGGTTATGGCTGATCTGT+TGG | + | chr4.1:45664664-45664683 | MS.gene044778:intron | 50.0% | |
| GCTATGGCACTTGGAAATGG+TGG | + | chr4.1:45662185-45662204 | MS.gene044778:CDS | 50.0% | |
| GTGGGCTTATCTCAGTTGGT+AGG | + | chr4.1:45663835-45663854 | MS.gene044778:intron | 50.0% | |
| GTTCCACCGAGACTTGAACT+CGG | + | chr4.1:45664490-45664509 | MS.gene044778:intron | 50.0% | |
| TGGTCTAGCGGTTAGGACAT+TGG | - | chr4.1:45664533-45664552 | None:intergenic | 50.0% | |
| TTCCACCGAGACTTGAACTC+GGG | + | chr4.1:45664491-45664510 | MS.gene044778:intron | 50.0% | |
| AACCCGAGTTCAAGTCTCGG+TGG | - | chr4.1:45664496-45664515 | None:intergenic | 55.0% | |
| ATGGCTGATCTGTTGGCACC+TGG | + | chr4.1:45664671-45664690 | MS.gene044778:CDS | 55.0% | |
| CCAACTGAGATAAGCCCACG+AGG | - | chr4.1:45663834-45663853 | None:intergenic | 55.0% | |
| CCTCGTGGGCTTATCTCAGT+TGG | + | chr4.1:45663831-45663850 | MS.gene044778:intron | 55.0% | |
| GGTTCCATGGTCTAGCGGTT+AGG | - | chr4.1:45664540-45664559 | None:intergenic | 55.0% | |
| GTGATGCACCAGCCATTCCT+AGG | - | chr4.1:45662032-45662051 | None:intergenic | 55.0% | |
| TGAGAGAGATGAACAGCCCC+AGG | - | chr4.1:45664692-45664711 | None:intergenic | 55.0% | |
| TGCACCAGCCATTCCTAGGA+CGG | - | chr4.1:45662028-45662047 | None:intergenic | 55.0% | |
| TGGCTGATCTGTTGGCACCT+GGG | + | chr4.1:45664672-45664691 | MS.gene044778:CDS | 55.0% | |
| !! | CCAAAGGGATTGGCTGAGGA+GGG | + | chr4.1:45662546-45662565 | MS.gene044778:CDS | 55.0% |
| !! | GCTTCCAAAGGGATTGGCTG+AGG | + | chr4.1:45662542-45662561 | MS.gene044778:CDS | 55.0% |
| !! | TCCAAAGGGATTGGCTGAGG+AGG | + | chr4.1:45662545-45662564 | MS.gene044778:CDS | 55.0% |
| CCAACCGTCCTAGGAATGGC+TGG | + | chr4.1:45662021-45662040 | MS.gene044778:CDS | 60.0% | |
| CCAGCCATTCCTAGGACGGT+TGG | - | chr4.1:45662024-45662043 | None:intergenic | 60.0% | |
| CCCTCCTCAGCCAATCCCTT+TGG | - | chr4.1:45662549-45662568 | None:intergenic | 60.0% | |
| GGCTGATCTGTTGGCACCTG+GGG | + | chr4.1:45664673-45664692 | MS.gene044778:CDS | 60.0% | |
| GGTGCATCACGTCTCACCTC+AGG | + | chr4.1:45662042-45662061 | MS.gene044778:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 45662003 | 45664764 | 45662003 | ID=MS.gene044778 |
| chr4.1 | mRNA | 45662003 | 45664764 | 45662003 | ID=MS.gene044778.t1;Parent=MS.gene044778 |
| chr4.1 | exon | 45662003 | 45662063 | 45662003 | ID=MS.gene044778.t1.exon1;Parent=MS.gene044778.t1 |
| chr4.1 | CDS | 45662003 | 45662063 | 45662003 | ID=cds.MS.gene044778.t1;Parent=MS.gene044778.t1 |
| chr4.1 | exon | 45662141 | 45662219 | 45662141 | ID=MS.gene044778.t1.exon2;Parent=MS.gene044778.t1 |
| chr4.1 | CDS | 45662141 | 45662219 | 45662141 | ID=cds.MS.gene044778.t1;Parent=MS.gene044778.t1 |
| chr4.1 | exon | 45662540 | 45662722 | 45662540 | ID=MS.gene044778.t1.exon3;Parent=MS.gene044778.t1 |
| chr4.1 | CDS | 45662540 | 45662722 | 45662540 | ID=cds.MS.gene044778.t1;Parent=MS.gene044778.t1 |
| chr4.1 | exon | 45664668 | 45664764 | 45664668 | ID=MS.gene044778.t1.exon4;Parent=MS.gene044778.t1 |
| chr4.1 | CDS | 45664668 | 45664764 | 45664668 | ID=cds.MS.gene044778.t1;Parent=MS.gene044778.t1 |
| Gene Sequence |
| Protein sequence |
